BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6130
(295 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P27864|RRP1_DROME Recombination repair protein 1 OS=Drosophila melanogaster GN=Rrp1
PE=1 SV=2
Length = 679
Score = 245 bits (626), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 120/220 (54%), Positives = 148/220 (67%), Gaps = 8/220 (3%)
Query: 72 NFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
N KI SWNVAGLRA +KK+GL I E+ DIFCLQETKC QLP EV + P Y YWL
Sbjct: 426 NLKICSWNVAGLRAWLKKDGLQLIDLEEPDIFCLQETKCANDQLPEEV-TRLPGYHPYWL 484
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHY---GRNCNSNIVNTFYIRKNVPNAGAGL 188
P GYAGV +Y+K+ P V YG+G NE + GR + + I VPN+G L
Sbjct: 485 CMP-GGYAGVAIYSKIMPIHVEYGIG--NEEFDDVGRMITAEYEKFYLINVYVPNSGRKL 541
Query: 189 KTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDS 248
L+ R+ W+KLF ++ KLDA KPV++ GD+NVSH PIDL NP NT++AGFT EERD
Sbjct: 542 VNLEPRMRWEKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDK 601
Query: 249 FSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+ LL GF D+FRHLYP R GAYT+W+YM+ AR+RN G
Sbjct: 602 MTELLGLGFVDTFRHLYPDRKGAYTFWTYMA-NARARNVG 640
>sp|A0MTA1|APEX1_DANRE DNA-(apurinic or apyrimidinic site) lyase OS=Danio rerio GN=apex1
PE=1 SV=1
Length = 310
Score = 224 bits (570), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 122/234 (52%), Positives = 150/234 (64%), Gaps = 8/234 (3%)
Query: 65 NKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFP 124
+K G N KI SWNV GLRA VKK GLD+++KED DI CLQETKC E LP ++ P
Sbjct: 47 SKDGRAANMKITSWNVDGLRAWVKKNGLDWVRKEDPDILCLQETKCAEKALPADIT-GMP 105
Query: 125 EY-KTYWLSSP-KAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKN 180
EY YW S K GY+GV + K +P VTYG+G K EH GR + + F +
Sbjct: 106 EYPHKYWAGSEDKEGYSGVAMLCKTEPLNVTYGIG-KEEHDKEGRVITAEFPDFFLVTAY 164
Query: 181 VPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAG 240
VPNA GL LD R WD F +L LDA KP++L GDLNV+H+ IDL NP N ++AG
Sbjct: 165 VPNASRGLVRLDYRKTWDVDFRAYLCGLDARKPLVLCGDLNVAHQEIDLKNPKGNRKNAG 224
Query: 241 FTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
FT EER+ F+ LL+ GFTDSFR LYP + AYT+W+YM ARS+N G +YF
Sbjct: 225 FTPEEREGFTQLLEAGFTDSFRELYPDQAYAYTFWTYMM-NARSKNVGWRLDYF 277
>sp|P28352|APEX1_MOUSE DNA-(apurinic or apyrimidinic site) lyase OS=Mus musculus GN=Apex1
PE=1 SV=2
Length = 317
Score = 202 bits (514), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 127/295 (43%), Positives = 171/295 (57%), Gaps = 21/295 (7%)
Query: 4 KKAAAKVVDKEEKSSKKRKSEVEDSDANTKKTKSGSVENKATGPMNEKLSLNKIDYSCNK 63
KKAAA D EE S+ E + S KKT+ E GP+ + D K
Sbjct: 6 KKAAAD--DGEEPKSE---PETKKSKGAAKKTEK---EAAGEGPVLYE------DPPDQK 51
Query: 64 KNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKF 123
+ G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ +
Sbjct: 52 TSPSGKSATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ-EL 110
Query: 124 PEYKTYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKN 180
P + S+P K GY+GVGL ++ P KV+YG+G + ++ GR + + +
Sbjct: 111 PGLTHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFESFVLVTAY 170
Query: 181 VPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAG 240
VPNAG GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AG
Sbjct: 171 VPNAGRGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 230
Query: 241 FTIEERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
FT +ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 231 FTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYMM-NARSKNVGWRLDYF 284
>sp|P43138|APEX1_RAT DNA-(apurinic or apyrimidinic site) lyase OS=Rattus norvegicus
GN=Apex1 PE=1 SV=2
Length = 317
Score = 202 bits (513), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 121/295 (41%), Positives = 171/295 (57%), Gaps = 21/295 (7%)
Query: 4 KKAAAKVVDKEEKSSKKRKSEVEDSDANTKKTKSGSVENKATGPMNEKLSLNKIDYSCNK 63
K+AAA+ D EE S+ + + + T+K +G P ++K S +
Sbjct: 6 KRAAAE--DGEEPKSEPETKKSKGAAKKTEKEAAGEGPVLYEDPPDQKTSAS-------- 55
Query: 64 KNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKF 123
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ +
Sbjct: 56 ----GKSATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ-EL 110
Query: 124 PEYKTYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKN 180
P + S+P K GY+GVGL ++ P KV+YG+G + ++ GR + + +
Sbjct: 111 PGLTHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFESFILVTAY 170
Query: 181 VPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAG 240
VPNAG GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AG
Sbjct: 171 VPNAGRGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 230
Query: 241 FTIEERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
FT +ER F +L DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 231 FTPQERQGFGEMLQAVPLADSFRHLYPNTAYAYTFWTYMM-NARSKNVGWRLDYF 284
>sp|P23196|APEX1_BOVIN DNA-(apurinic or apyrimidinic site) lyase OS=Bos taurus GN=APEX1
PE=1 SV=2
Length = 318
Score = 201 bits (510), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 109/230 (47%), Positives = 144/230 (62%), Gaps = 5/230 (2%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++
Sbjct: 57 GKSATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPVELQELSGLSH 116
Query: 128 TYWLS-SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAG 185
YW + S K GY+GVGL ++ P KV+YG+G + ++ GR + + VPNAG
Sbjct: 117 QYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEYDAFVLVTAYVPNAG 176
Query: 186 AGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEE 245
GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AGFT +E
Sbjct: 177 RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 236
Query: 246 RDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
R F LL TDSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 237 RQGFGELLQAVPLTDSFRHLYPNTAYAYTFWTYM-MNARSKNVGWRLDYF 285
>sp|P37454|EXOA_BACSU Exodeoxyribonuclease OS=Bacillus subtilis (strain 168) GN=exoA PE=1
SV=1
Length = 252
Score = 200 bits (509), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 146/224 (65%), Gaps = 8/224 (3%)
Query: 73 FKIASWNVAGLRACVKK-EGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
K+ SWNV GLRA ++K + L Y+K+EDADI CLQETK + Q V ++ +Y YW
Sbjct: 1 MKLISWNVNGLRAVMRKMDFLSYLKEEDADIICLQETKIQDGQ----VDLQPEDYHVYWN 56
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
+ K GY+G +++K +P +V YG+G + ++ GR N F + PN+ GL+
Sbjct: 57 YAVKKGYSGTAVFSKQEPLQVIYGIGVEEHDQEGRVITLEFENVFVMTVYTPNSRRGLER 116
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
+D R++W++ ++++LD +KPVIL GDLNV+H+ IDL NP N +AGF+ +ER++F+
Sbjct: 117 IDYRMQWEEALLSYILELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQEREAFT 176
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF DSFRH+YP GAY++WSY + AR RN G +YF
Sbjct: 177 RFLEAGFVDSFRHVYPDLEGAYSWWSYRA-GARDRNIGWRIDYF 219
>sp|P27695|APEX1_HUMAN DNA-(apurinic or apyrimidinic site) lyase OS=Homo sapiens GN=APEX1
PE=1 SV=2
Length = 318
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 148/237 (62%), Gaps = 7/237 (2%)
Query: 62 NKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKM 121
K + G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++
Sbjct: 51 QKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ- 109
Query: 122 KFPEYKTYWLSSP--KAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIR 178
+ P + S+P K GY+GVGL ++ P KV+YG+G +++ GR + + +
Sbjct: 110 ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVT 169
Query: 179 KNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRS 238
VPNAG GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++
Sbjct: 170 AYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKN 229
Query: 239 AGFTIEERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
AGFT +ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 230 AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYF 285
>sp|A2T6Y4|APEX1_PANTR DNA-(apurinic or apyrimidinic site) lyase OS=Pan troglodytes
GN=APEX1 PE=3 SV=1
Length = 318
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 148/237 (62%), Gaps = 7/237 (2%)
Query: 62 NKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKM 121
K + G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++
Sbjct: 51 QKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ- 109
Query: 122 KFPEYKTYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIR 178
+ P + S+P K GY+GVGL ++ P KV+YG+G + ++ GR + + +
Sbjct: 110 ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVT 169
Query: 179 KNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRS 238
VPNAG GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++
Sbjct: 170 AYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKN 229
Query: 239 AGFTIEERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
AGFT +ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 230 AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYF 285
>sp|A1YFZ3|APEX1_PANPA DNA-(apurinic or apyrimidinic site) lyase OS=Pan paniscus GN=APEX1
PE=3 SV=1
Length = 318
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 148/237 (62%), Gaps = 7/237 (2%)
Query: 62 NKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKM 121
K + G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++
Sbjct: 51 QKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ- 109
Query: 122 KFPEYKTYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIR 178
+ P + S+P K GY+GVGL ++ P KV+YG+G + ++ GR + + +
Sbjct: 110 ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVT 169
Query: 179 KNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRS 238
VPNAG GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++
Sbjct: 170 AYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKN 229
Query: 239 AGFTIEERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
AGFT +ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 230 AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYF 285
>sp|A2T7I6|APEX1_PONPY DNA-(apurinic or apyrimidinic site) lyase OS=Pongo pygmaeus
GN=APEX1 PE=3 SV=1
Length = 318
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 145/231 (62%), Gaps = 7/231 (3%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ + P
Sbjct: 57 GKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLS 115
Query: 128 TYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNA 184
+ S+P K GY+GVGL ++ P KV+YG+G + ++ GR + + + VPNA
Sbjct: 116 HQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNA 175
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
G GL L+ R WD+ F L L + KP++L GDLNV+H+ IDL NP N ++AGFT +
Sbjct: 176 GRGLVRLEYRQRWDEAFRRFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 235
Query: 245 ERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 236 ERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYF 285
>sp|A1YES6|APEX1_GORGO DNA-(apurinic or apyrimidinic site) lyase OS=Gorilla gorilla
gorilla GN=APEX1 PE=3 SV=1
Length = 318
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 147/237 (62%), Gaps = 7/237 (2%)
Query: 62 NKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKM 121
K + G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++
Sbjct: 51 QKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ- 109
Query: 122 KFPEYKTYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIR 178
+ P + S+P K GY+GVGL ++ P KV+YG+G + ++ GR + + +
Sbjct: 110 ELPGLSYQYWSAPXXKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVT 169
Query: 179 KNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRS 238
VPNAG GL L+ R WD+ F L L + KP++L GDLNV+H+ IDL NP N ++
Sbjct: 170 AYVPNAGRGLVRLEYRQRWDEAFRRFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKN 229
Query: 239 AGFTIEERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
AGFT +ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 230 AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYF 285
>sp|P51173|APEA_DICDI DNA-(apurinic or apyrimidinic site) lyase OS=Dictyostelium
discoideum GN=apeA PE=2 SV=2
Length = 361
Score = 195 bits (496), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 103/229 (44%), Positives = 148/229 (64%), Gaps = 7/229 (3%)
Query: 69 EEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKT 128
EE KI SWNVAG ++ + K +Y++KE+ D+ CLQETK + + + + K EY
Sbjct: 101 EENQMKIISWNVAGFKSVLSKGFTEYVEKENPDVLCLQETKINPSNIKKDQMPKGYEY-- 158
Query: 129 YWLSSPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGA- 186
+++ + + G+ G G+ TK KPN +T+G+G K+++ GR + + +PNAG
Sbjct: 159 HFIEADQKGHHGTGVLTKKKPNAITFGIGIAKHDNEGRVITLEYDQFYIVNTYIPNAGTR 218
Query: 187 GLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEE 245
GL+ LD R+ EWD F +L KL+A KP+I GDLNV+H IDL NP TN +SAGFTIEE
Sbjct: 219 GLQRLDYRIKEWDVDFQAYLEKLNATKPIIWCGDLNVAHTEIDLKNPKTNKKSAGFTIEE 278
Query: 246 RDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
R SFS+ L+KG+ DS+RH P + G+YT+WSY+ RS+N G +YF
Sbjct: 279 RTSFSNFLEKGYVDSYRHFNPGKEGSYTFWSYLG-GGRSKNVGWRLDYF 326
>sp|P45951|ARP_ARATH Apurinic endonuclease-redox protein OS=Arabidopsis thaliana GN=ARP
PE=2 SV=2
Length = 536
Score = 166 bits (419), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 126/212 (59%), Gaps = 9/212 (4%)
Query: 74 KIASWNVAGLRACVKKE---GLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY-KTY 129
K+ +WNV GLR +K E L ++E+ DI CLQETK + K Y ++
Sbjct: 277 KVMTWNVNGLRGLLKFESFSALQLAQRENFDILCLQETKLQVKDVEEIKKTLIDGYDHSF 336
Query: 130 W-LSSPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAG 187
W S K GY+G + +++KP V YG G + ++ GR + + + I VPN+G G
Sbjct: 337 WSCSVSKLGYSGTAIISRIKPLSVRYGTGLSGHDTEGRIVTAEFDSFYLINTYVPNSGDG 396
Query: 188 LKTLDKRLE-WDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEER 246
LK L R+E WD+ H+ +L+ KPV+L GDLN +H+ ID+ NP N RSAGFTIEER
Sbjct: 397 LKRLSYRIEEWDRTLSNHIKELEKSKPVVLTGDLNCAHEEIDIFNPAGNKRSAGFTIEER 456
Query: 247 DSF-SSLLDKGFTDSFRHLYPKRTGAYTYWSY 277
SF ++LLDKGF D+FR +P G YTYW Y
Sbjct: 457 QSFGANLLDKGFVDTFRKQHPGVVG-YTYWGY 487
>sp|P0A2X4|EXOA_STRR6 Exodeoxyribonuclease OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=exoA PE=3 SV=1
Length = 275
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/236 (39%), Positives = 130/236 (55%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEVK 120
K+ SWN+ L RA + +E L + E+ADI +QETK T+ E+
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAENADIIAIQETKLSAKGPTKKHVEIL 60
Query: 121 MK-FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNIV 172
+ FP Y+ W SS + GYAG + LY K +++ G + + GR
Sbjct: 61 EELFPGYENTWRSSQEPARKGYAGTMFLYKKELTPTISFPEIGAPSTMDLEGRIITLEFD 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
F + PNAG GLK L++R WD + E+L +LD EKPV+ GD NV+H IDLANP
Sbjct: 121 AFFVTQVYTPNAGDGLKRLEERQVWDAKYAEYLAELDKEKPVLATGDYNVAHNEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+N RS GFT EER F++LL GFTD+FRH++ YT+W+ SKT++ NTG
Sbjct: 181 ASNRRSPGFTDEERAGFTNLLATGFTDTFRHVHGDVPERYTWWAQRSKTSKINNTG 236
>sp|P0A2X3|EXOA_STRPN Exodeoxyribonuclease OS=Streptococcus pneumoniae serotype 4 (strain
ATCC BAA-334 / TIGR4) GN=exoA PE=3 SV=1
Length = 275
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/236 (39%), Positives = 130/236 (55%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEVK 120
K+ SWN+ L RA + +E L + E+ADI +QETK T+ E+
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAENADIIAIQETKLSAKGPTKKHVEIL 60
Query: 121 MK-FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNIV 172
+ FP Y+ W SS + GYAG + LY K +++ G + + GR
Sbjct: 61 EELFPGYENTWRSSQEPARKGYAGTMFLYKKELTPTISFPEIGAPSTMDLEGRIITLEFD 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
F + PNAG GLK L++R WD + E+L +LD EKPV+ GD NV+H IDLANP
Sbjct: 121 AFFVTQVYTPNAGDGLKRLEERQVWDAKYAEYLAELDKEKPVLATGDYNVAHNEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+N RS GFT EER F++LL GFTD+FRH++ YT+W+ SKT++ NTG
Sbjct: 181 ASNRRSPGFTDEERAGFTNLLATGFTDTFRHVHGDVPERYTWWAQRSKTSKINNTG 236
>sp|P09030|EX3_ECOLI Exodeoxyribonuclease III OS=Escherichia coli (strain K12) GN=xthA
PE=1 SV=4
Length = 268
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 97/232 (41%), Gaps = 38/232 (16%)
Query: 73 FKIASWNVAGLRACVKKEGLDYI-KKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
K S+N+ GLRA + L+ I +K D+ LQETK H+ P E K Y ++
Sbjct: 1 MKFVSFNINGLRA--RPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKL-GYNVFYH 57
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNC----------NSNIVNTFYIRKN- 180
+ G+ GV L TK P V G +E R N ++N ++ +
Sbjct: 58 G--QKGHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGES 115
Query: 181 ------VPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTT 234
P + L LE +L + PV+++GD+N+S +D+
Sbjct: 116 RDHPIKFPAKAQFYQNLQNYLE---------TELKRDNPVLIMGDMNISPTDLDIGIGEE 166
Query: 235 N------TRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSK 280
N T F EER+ L+ G D+FRH P+ ++++ Y SK
Sbjct: 167 NRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSK 218
>sp|P0A1A9|EX3_SALTY Exodeoxyribonuclease III OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=xthA PE=3 SV=1
Length = 268
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 96/232 (41%), Gaps = 38/232 (16%)
Query: 73 FKIASWNVAGLRACVKKEGLDYI-KKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
K S+N+ GLRA + L+ I +K D+ LQETK H+ P E K Y ++
Sbjct: 1 MKFVSFNINGLRA--RPHQLEAIVEKHQPDVIGLQETKVHDEMFPLEEVAKL-GYNVFYH 57
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNC----------NSNIVNTFYIRKN- 180
+ G+ GV L TK P V G E R N ++N ++ +
Sbjct: 58 G--QKGHYGVALLTKATPISVRRGFPDDGEEAQRRIIMAEIPSPLGNITVINGYFPQGES 115
Query: 181 ------VPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTT 234
P + L LE +L + PV+++GD+N+S +D+
Sbjct: 116 RDHPLKFPAKAQFYQNLQNYLE---------TELKCDNPVLIMGDMNISPTDLDIGIGEE 166
Query: 235 N------TRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSK 280
N T F EER+ S LL G D+FR P+ ++++ Y SK
Sbjct: 167 NRKRWLRTGKCSFLPEEREWMSRLLKWGLVDTFRQANPQTMDKFSWFDYRSK 218
>sp|P0A1B0|EX3_SALTI Exodeoxyribonuclease III OS=Salmonella typhi GN=xthA PE=3 SV=1
Length = 268
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 96/232 (41%), Gaps = 38/232 (16%)
Query: 73 FKIASWNVAGLRACVKKEGLDYI-KKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
K S+N+ GLRA + L+ I +K D+ LQETK H+ P E K Y ++
Sbjct: 1 MKFVSFNINGLRA--RPHQLEAIVEKHQPDVIGLQETKVHDEMFPLEEVAKL-GYNVFYH 57
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNC----------NSNIVNTFYIRKN- 180
+ G+ GV L TK P V G E R N ++N ++ +
Sbjct: 58 G--QKGHYGVALLTKATPISVRRGFPDDGEEAQRRIIMAEIPSPLGNITVINGYFPQGES 115
Query: 181 ------VPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTT 234
P + L LE +L + PV+++GD+N+S +D+
Sbjct: 116 RDHPLKFPAKAQFYQNLQNYLE---------TELKCDNPVLIMGDMNISPTDLDIGIGEE 166
Query: 235 N------TRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSK 280
N T F EER+ S LL G D+FR P+ ++++ Y SK
Sbjct: 167 NRKRWLRTGKCSFLPEEREWMSRLLKWGLVDTFRQANPQTMDKFSWFDYRSK 218
>sp|P44318|EX3_HAEIN Exodeoxyribonuclease III OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=xthA PE=3 SV=1
Length = 267
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 94/223 (42%), Gaps = 20/223 (8%)
Query: 73 FKIASWNVAGLRACVKKEGLD-YIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
K S+N+ GLRA + L+ I+K D+ LQE K + P E+ Y +
Sbjct: 1 MKFISFNINGLRA--RPHQLEAIIEKYQPDVIGLQEIKVADEAFPYEITENLG-YHVF-- 55
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNA---GAGL 188
+ G+ GV L TK +P + G T NE + + T + V N
Sbjct: 56 HHGQKGHYGVALLTKQEPKVIRRGFPTDNEDAQKRIIMADLETEFGLLTVINGYFPQGES 115
Query: 189 KTLDKRLEWDKLFHEHLVKL-----DAEKPVILIGDLNVSHKPIDLANPTTN------TR 237
+ + + + F+ L + D P++++GD+N+S +D+ N T
Sbjct: 116 RAHETKFPAKEKFYADLQQYLEKEHDKSNPILIMGDMNISPSDLDIGIGDENRKRWLRTG 175
Query: 238 SAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSK 280
F EER + L D G DSFR L P ++++ Y SK
Sbjct: 176 KCSFLPEERAWYQRLYDYGLEDSFRKLNPTANDKFSWFDYRSK 218
>sp|Q5E9N9|APEX2_BOVIN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Bos taurus GN=APEX2
PE=2 SV=1
Length = 514
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 107/281 (38%), Gaps = 74/281 (26%)
Query: 73 FKIASWNVAGLRA------------CVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVK 120
++ SWN+ G+R+ C + K DADI CLQETK L +
Sbjct: 2 LRLVSWNINGIRSPLQGVRCEEPSSCSAMAMGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 121 MKFPEYKTYW-LSSPKAGYAGVGLYTK--VKPNKVTYGLG----TKNEHYGRNCNSNIVN 173
+ Y +Y+ S ++GY+GV + K P GL T+N G N +
Sbjct: 62 I-IEGYNSYFSFSRNRSGYSGVATFCKDSATPVAAEEGLSGLLSTQNGDVGCYGNMDDFT 120
Query: 174 TFYIRKNVPNAGAGLKTLDKRLEWD--------------------------KLFHEHLVK 207
+R + + G L T K W+ K+ L++
Sbjct: 121 QEELRA-LDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLTFKMRFYRLLQ 179
Query: 208 LDAE------KPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDK------ 255
+ AE VI++GDLN +H+PID + + E D +D
Sbjct: 180 IRAEALLAAGSHVIILGDLNTAHRPID------HWDAVNMECFEEDPGRKWMDGLLSNLG 233
Query: 256 --------GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
F DS+R PK+ GA+T WS +S AR N G
Sbjct: 234 CESGSHMGPFIDSYRCFQPKQKGAFTCWSTVSG-ARHLNYG 273
>sp|Q9UBZ4|APEX2_HUMAN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Homo sapiens
GN=APEX2 PE=1 SV=1
Length = 518
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 106/281 (37%), Gaps = 74/281 (26%)
Query: 73 FKIASWNVAGLRA------------CVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVK 120
++ SWN+ G+R C + + DADI CLQETK L +
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 121 MKFPEYKTYW-LSSPKAGYAGVGLYTK--VKPNKVTYGL----GTKNEHYGRNCNSNIVN 173
+ Y +Y+ S ++GY+GV + K P GL T+N G N +
Sbjct: 62 I-VEGYNSYFSFSRNRSGYSGVATFCKDNATPVAAEEGLSGLFATQNGDVGCYGNMDEFT 120
Query: 174 TFYIRKNVPNAGAGLKTLDKRLEWD--------------------------KLFHEHLVK 207
+R + + G L T K W+ K+ L++
Sbjct: 121 QEELRA-LDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLVFKMRFYRLLQ 179
Query: 208 LDAE------KPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDK------ 255
+ AE VI++GDLN +H+PID + + E D +D
Sbjct: 180 IRAEALLAAGSHVIILGDLNTAHRPID------HWDAVNLECFEEDPGRKWMDSLLSNLG 233
Query: 256 --------GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
F DS+R PK+ GA+T WS ++ AR N G
Sbjct: 234 CQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTG-ARHLNYG 273
>sp|Q68G58|APEX2_MOUSE DNA-(apurinic or apyrimidinic site) lyase 2 OS=Mus musculus
GN=Apex2 PE=1 SV=1
Length = 516
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 106/283 (37%), Gaps = 79/283 (27%)
Query: 73 FKIASWNVAGLR------ACVKKEGLD-----YIKKEDADIFCLQETKCHETQLPPEVKM 121
++ SWN+ G+R AC + + + DADI CLQETK L + +
Sbjct: 2 LRVVSWNINGIRSPLQGLACQEPSSCPTALRRVLDELDADIVCLQETKVTRDVLTEPLAI 61
Query: 122 KFPEYKTYWLSSPKAGYAGVGLYTK--VKPNKVTYGL----GTKNEHYGRNCNSNI---- 171
+ S ++GY+GV + K P GL T N G C N+
Sbjct: 62 VEGYNSYFSFSRSRSGYSGVATFCKDSATPVAAEEGLSGVFATLNGDIG--CYGNMDEFT 119
Query: 172 -------------------VNTF--------YIRKNVPNAGAGLKTLDKRLEWDKLFHEH 204
+ T I P+A G +RL + F+
Sbjct: 120 QEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKP---ERLTFKMRFYRL 176
Query: 205 L-----VKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLD----- 254
L L A VI++GDLN +H+PID + ++ E D +D
Sbjct: 177 LQMRAEALLAAGSHVIILGDLNTAHRPID------HCDASSLECFEEDPGRKWMDGLLSN 230
Query: 255 ---------KGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
F DS+R+L+PK+ A+T WS +S AR N G
Sbjct: 231 PGDEAGPHIGLFMDSYRYLHPKQQRAFTCWSVVSG-ARHLNYG 272
>sp|P87175|APN2_SCHPO DNA-(apurinic or apyrimidinic site) lyase 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=apn2 PE=1 SV=1
Length = 523
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 100/272 (36%), Gaps = 60/272 (22%)
Query: 73 FKIASWNVAGLRACV------KKEGLDYIKKE-DADIFCLQETKCHETQLPPE--VKMKF 123
+I SWNV G++ KK I +E AD+ C+QE K + P + V F
Sbjct: 1 MRILSWNVNGIQNPFNYFPWNKKNSYKEIFQELQADVICVQELKMQKDSFPQQYAVVEGF 60
Query: 124 PEYKTYWLSSPKAGYAGVGLYTK------------------VKPNKVTYGLGTKNEHYGR 165
Y T+ + GY+GVG Y K V+ K +Y ++E G
Sbjct: 61 DSYFTF--PKIRKGYSGVGFYVKKDVAIPVKAEEGITGILPVRGQKYSYSEAPEHEKIGF 118
Query: 166 -----------------NCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKL 208
C F + +G L+ R + K E + +L
Sbjct: 119 FPKDIDRKTANWIDSEGRCILLDFQMFILIGVYCPVNSGENRLEYRRAFYKALRERIERL 178
Query: 209 DAE--KPVILIGDLNVSHKPIDLANPTTNTRSAGF-TIEE-----RDSFSSLLDKGFTDS 260
E + +IL+GD+N+ PID A+ R + +I E RD D
Sbjct: 179 IKEGNRKIILVGDVNILCNPIDTADQKDIIRESLIPSIMESRQWIRDLLLPSRLGLLLDI 238
Query: 261 FRHLYPKRTGAYTYWSYMSKTARSRNTGCTNY 292
R +P R G +T W+ NT TNY
Sbjct: 239 GRIQHPTRKGMFTCWN------TRLNTRPTNY 264
>sp|P11369|POL2_MOUSE Retrovirus-related Pol polyprotein LINE-1 OS=Mus musculus GN=Pol
PE=1 SV=2
Length = 1281
Score = 37.7 bits (86), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 88/216 (40%), Gaps = 40/216 (18%)
Query: 73 FKIASWNVAGLRACVKKEGL-DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
F + S N+ GL + +K+ L D++ K+D CLQET E ++ +KT +
Sbjct: 15 FSLISLNINGLNSPIKRHRLTDWLHKQDPTFCCLQETHLREKD---RHYLRVKGWKTIFQ 71
Query: 132 SSPKAGYAGVGLYTK---------VKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVP 182
++ AGV + +K +K + + K + +I+N + P
Sbjct: 72 ANGLKKQAGVAILISDKIDFQPKVIKKDKEGHFILIKGKILQEEL--SILNIY-----AP 124
Query: 183 NAGAGLKTLDKRLEWDKLFHEHLVKLDA--EKPVILIGDLNVSHKPIDLANPTTNTRSAG 240
NA A + LVKL A I++GD N P+ + + +
Sbjct: 125 NARAA-----------TFIRDTLVKLKAYIAPHTIIVGDFNT---PLSSKDRSWKQKLNR 170
Query: 241 FTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWS 276
T++ + + TD +R YPK T YT++S
Sbjct: 171 DTVKLTEVMKQM---DLTDIYRTFYPK-TKGYTFFS 202
>sp|Q6LMV8|RIMM_PHOPR Ribosome maturation factor RimM OS=Photobacterium profundum GN=rimM
PE=3 SV=1
Length = 177
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLP 116
GE +I SW G K EGLD +EDA IF E H QLP
Sbjct: 48 GEWKPIQIESWKKHGQGMVAKLEGLDI--REDAQIFTNAEVAVHADQLP 94
>sp|P08548|LIN1_NYCCO LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=1
SV=1
Length = 1260
Score = 34.7 bits (78), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 42/222 (18%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGL-DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY 126
G I S NV GL +K+ L D+I+K DI C+QE+ H T L + ++K +
Sbjct: 2 GLSKGLSIFSINVNGLNCPLKRHRLADWIQKLKPDICCIQES--HLT-LKDKYRLKVKGW 58
Query: 127 KTYWLSSPKAGYAGVGLY---------TKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFY 176
+ + ++ K AG+ + TK++ +K + + K N Y +I+N +
Sbjct: 59 SSIFQANGKQKKAGIAILFADAIGFKPTKIRKDKDGHFIFVKGNTQYDE---ISIINIYA 115
Query: 177 IRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLD--AEKPVILIGDLNVSHKPIDLANPTT 234
N P + E L + I++GD N P+ + + ++
Sbjct: 116 PNHNAP----------------QFIRETLTDMSNLISSTSIVVGDFNT---PLAVLDRSS 156
Query: 235 NTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWS 276
+ + E D S++ TD +R +P +T YT++S
Sbjct: 157 KKKLSK---EILDLNSTIQHLDLTDIYRTFHPNKT-EYTFFS 194
>sp|Q7MHT2|RIMM_VIBVY Ribosome maturation factor RimM OS=Vibrio vulnificus (strain YJ016)
GN=rimM PE=3 SV=1
Length = 182
Score = 31.2 bits (69), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 57 IDYSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLP 116
DYS N+ GE FK+ SW K EGLD +EDA + E LP
Sbjct: 42 FDYSPWYVNQKGEWVEFKVESWKRHNKGMVAKLEGLDV--REDAHLLTNLEIAIDPAVLP 99
Query: 117 PEVKMKFPEYKTYW 130
+ E + YW
Sbjct: 100 -----ELSEDEFYW 108
>sp|Q8DC32|RIMM_VIBVU Ribosome maturation factor RimM OS=Vibrio vulnificus (strain CMCP6)
GN=rimM PE=3 SV=1
Length = 182
Score = 31.2 bits (69), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 57 IDYSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLP 116
DYS N+ GE FK+ SW K EGLD +EDA + E LP
Sbjct: 42 FDYSPWYVNQKGEWVEFKVESWKRHNKGMVAKLEGLDV--REDAHLLTNLEIAIDPAVLP 99
Query: 117 PEVKMKFPEYKTYW 130
+ E + YW
Sbjct: 100 -----ELSEDEFYW 108
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,179,677
Number of Sequences: 539616
Number of extensions: 5097898
Number of successful extensions: 13290
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 13079
Number of HSP's gapped (non-prelim): 206
length of query: 295
length of database: 191,569,459
effective HSP length: 117
effective length of query: 178
effective length of database: 128,434,387
effective search space: 22861320886
effective search space used: 22861320886
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)