Query psy6130
Match_columns 295
No_of_seqs 252 out of 1805
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 18:24:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6130.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6130hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g91_A MTH0212, exodeoxyribonu 100.0 1.2E-42 4E-47 305.4 19.0 220 72-294 3-225 (265)
2 1hd7_A DNA-(apurinic or apyrim 100.0 3.4E-41 1.2E-45 304.3 16.2 229 64-294 53-286 (318)
3 2j63_A AP-endonuclease; base e 100.0 2E-40 6.7E-45 312.6 19.3 224 69-294 146-434 (467)
4 2o3h_A DNA-(apurinic or apyrim 100.0 8.1E-38 2.8E-42 277.0 22.6 228 65-294 21-253 (285)
5 2voa_A AF_EXO, XTHA, exodeoxyr 100.0 2.1E-36 7.2E-41 263.4 22.4 216 73-294 2-221 (257)
6 2jc5_A Exodeoxyribonuclease; h 100.0 1E-36 3.4E-41 265.4 17.9 219 73-294 2-224 (259)
7 2jc4_A Exodeoxyribonuclease II 100.0 3.8E-36 1.3E-40 261.2 20.8 216 73-294 1-220 (256)
8 1ako_A Exonuclease III; AP-end 100.0 2.3E-35 8E-40 257.9 15.5 217 73-294 1-232 (268)
9 1vyb_A ORF2 contains A reverse 100.0 1.3E-30 4.5E-35 223.6 15.9 196 69-294 4-208 (238)
10 4gew_A 5'-tyrosyl-DNA phosphod 100.0 2.3E-28 7.9E-33 224.2 13.9 199 64-294 111-325 (362)
11 2ei9_A Non-LTR retrotransposon 100.0 2.6E-28 9E-33 211.7 12.3 182 71-294 6-190 (240)
12 1wdu_A TRAS1 ORF2P; four-layer 99.9 7.5E-26 2.6E-30 196.0 16.6 191 69-294 16-211 (245)
13 4fva_A 5'-tyrosyl-DNA phosphod 99.9 6.5E-26 2.2E-30 195.8 14.1 197 65-294 6-219 (256)
14 3teb_A Endonuclease/exonucleas 99.9 2.3E-24 7.7E-29 187.8 12.7 197 71-294 2-232 (266)
15 4gz1_A Tyrosyl-DNA phosphodies 99.9 1.1E-24 3.7E-29 187.9 7.3 197 69-294 6-215 (256)
16 4f1h_A Tyrosyl-DNA phosphodies 99.9 2.7E-24 9.3E-29 183.4 8.2 196 71-294 2-209 (250)
17 3l1w_A Uncharacterized protein 99.9 1.2E-22 4.2E-27 176.5 14.7 188 73-294 1-218 (257)
18 3g6s_A Putative endonuclease/e 99.9 1.2E-22 4.1E-27 177.7 13.7 193 71-294 2-227 (267)
19 1zwx_A SMCL, sphingomyelinase- 99.9 1.2E-22 4.2E-27 180.6 9.5 197 67-294 5-251 (301)
20 3mpr_A Putative endonuclease/e 99.9 1.7E-21 5.7E-26 173.6 13.7 194 69-294 3-231 (298)
21 3i41_A Beta-hemolysin; beta to 99.8 8.9E-21 3E-25 170.7 10.1 198 68-294 25-269 (317)
22 2ddr_A Sphingomyelin phosphodi 99.8 3.5E-20 1.2E-24 164.8 13.3 202 69-294 6-256 (306)
23 3ngq_A CCR4-NOT transcription 99.6 1.3E-15 4.3E-20 140.6 13.1 152 70-226 29-260 (398)
24 2f1n_A CDT B, cytolethal diste 99.6 4.5E-15 1.5E-19 127.0 13.8 150 69-226 12-192 (262)
25 1sr4_B CDT B, cytolethal diste 99.6 1.9E-14 6.6E-19 124.3 14.0 148 71-224 3-182 (261)
26 2a40_B Deoxyribonuclease-1; WA 99.5 1.8E-13 6.2E-18 119.1 11.3 145 73-225 1-174 (260)
27 4b8c_D Glucose-repressible alc 99.5 8.1E-15 2.8E-19 145.6 2.6 153 70-226 392-610 (727)
28 1i9z_A Synaptojanin, phosphati 99.1 9.4E-10 3.2E-14 99.6 11.3 148 70-224 24-212 (347)
29 2imq_X Salivary nitrophorin; f 99.0 3.9E-11 1.3E-15 105.9 0.8 149 70-225 6-177 (282)
30 2xsw_A 72 kDa inositol polypho 98.8 4.3E-09 1.5E-13 95.5 6.7 151 69-225 24-210 (357)
31 3mtc_A Type II inositol-1,4,5- 98.6 9E-08 3.1E-12 84.9 8.3 148 71-225 8-196 (313)
32 4a9c_A Phosphatidylinositol-3, 98.2 2.4E-06 8.1E-11 75.9 8.1 148 70-224 7-196 (316)
33 3p8k_A Hydrolase, carbon-nitro 33.9 32 0.0011 29.0 3.7 46 67-112 15-66 (281)
34 3ivz_A Nitrilase; alpha-beta s 24.4 71 0.0024 26.4 4.1 17 96-112 31-47 (262)
35 3hkx_A Amidase; alpha-beta-BET 22.2 1E+02 0.0034 25.9 4.7 16 96-111 50-65 (283)
No 1
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=100.00 E-value=1.2e-42 Score=305.39 Aligned_cols=220 Identities=35% Similarity=0.632 Sum_probs=191.2
Q ss_pred ceEEEEEecCCcchhhhhhHHHHHhhcCCcEEEEcccCCCCCCCChhhhhcCCCCeEEEecCCCCCcceEEEEEeccCce
Q psy6130 72 NFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNK 151 (295)
Q Consensus 72 ~lkI~TwNv~g~~~~~~~~~~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~~~~gy~~~~~~~~~~g~~Gvailsk~~~~~ 151 (295)
.|+|+||||+|++...++.++++|++++|||||||||+.....+...+.. ..||..++......++.|||||||.++..
T Consensus 3 ~l~i~s~Nv~g~~~~~~~~l~~~i~~~~~DIv~LQEt~~~~~~~~~~~~~-~~gy~~~~~~~~~~~~~Gvail~k~~~~~ 81 (265)
T 3g91_A 3 VLKIISWNVNGLRAVHRKGFLKWFMEEKPDILCLQEIKAAPEQLPRKLRH-VEGYRSFFTPAERKGYSGVAMYTKVPPSS 81 (265)
T ss_dssp EEEEEEEECSCHHHHHHHTHHHHHHHHCCSEEEEECCCSCGGGSCHHHHC-CTTCEEEEECBSSTTSCCEEEEESSCCSE
T ss_pred ccEEEEEEcCCchhhhhhhHHHHHHhcCCCEEEEEeccccccccChhhhc-ccCCcEEEccCCCCCcCEEEEEEecChHH
Confidence 59999999999998776568999999999999999999877666655443 57997777654556778999999999887
Q ss_pred EEecCCCCCC-CCcceEEEEeCCEEEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhhc-CCCCEEEEccCCCCCCCCCC
Q psy6130 152 VTYGLGTKNE-HYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLD-AEKPVILIGDLNVSHKPIDL 229 (295)
Q Consensus 152 ~~~~~~~~~~-~~~r~i~~~~~~~~l~~vy~p~~~~~~~~~~~r~~~~~~l~~~l~~l~-~~~pvIl~GDFN~~~~~~D~ 229 (295)
+...+..... .++|++.+++..+.|+++|+|+......++++|..|++.|..++..+. .+.|+|||||||+.+.++|.
T Consensus 82 ~~~~~~~~~~d~~gr~i~~~~~~~~i~~vy~p~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~ii~GDfN~~~~~~d~ 161 (265)
T 3g91_A 82 LREGFGVERFDTEGRIQIADFDDFLLYNIYFPNGAMSEERLKYKLEFYDAFLEDVNRERDSGRNVIICGDFNTAHREIDL 161 (265)
T ss_dssp EECCCSCHHHHSBSCEEEEECSSCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCCCCSGGGB
T ss_pred hccCCCCcccCCcCCEEEEEeCCEEEEEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHcCCCCEEEECccccCCchhhc
Confidence 7765543222 689999999999999999999988776788899999999999988874 37999999999999999999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhCCceeeecccCCCCCCcccccCCCCCCCccCCCccc-cccC
Q psy6130 230 ANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCT-NYFG 294 (295)
Q Consensus 230 ~~~~~~~~~~~~~~~e~~~~~~ll~~gl~D~~r~~~p~~~~~yT~~s~~~~~~~~~~~~~R-Dy~~ 294 (295)
.++..+.+.+++++.|++.|..|++.||+|+||.++|... .||||++++ ++++++.||| |||+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~D~~r~~~p~~~-~yT~~~~~~-~~~~~~~~~rID~il 225 (265)
T 3g91_A 162 ARPKENSNVSGFLPVERAWIDKFIENGYVDTFRMFNSDPG-QYTWWSYRT-RARERNVGWRLDYFF 225 (265)
T ss_dssp SCTGGGTTSTTSCHHHHHHHHHHHHTTEEETHHHHCCCSC-CCSBCCSST-TTTTTTCCBCCEEEE
T ss_pred cCHhhcCCCCccCHHHHHHHHHHHhcCcEEeeHhhCCCCC-CCCCcCCCC-CccccCceEEEEEEE
Confidence 9988888899999999999999998899999999999987 799999999 9999999999 9985
No 2
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=100.00 E-value=3.4e-41 Score=304.31 Aligned_cols=229 Identities=47% Similarity=0.858 Sum_probs=178.4
Q ss_pred CCCCCCCCceEEEEEecCCcchhhhhhHHHHHhhcCCcEEEEcccCCCCCCCChhhhhcCCCC-eEEEec-CCCCCcceE
Q psy6130 64 KNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY-KTYWLS-SPKAGYAGV 141 (295)
Q Consensus 64 ~~~~~~~~~lkI~TwNv~g~~~~~~~~~~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~~~~gy-~~~~~~-~~~~g~~Gv 141 (295)
+++......|+|+||||+|++...++.++++|..++|||||||||+.....+...+.. ..|| +.++.. ....|+.|+
T Consensus 53 ~~~~~~~~~lrv~t~Nv~g~~~~~~~~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~-~~gy~~~~~~~~~~~~g~~Gv 131 (318)
T 1hd7_A 53 TSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQE-LPGLSHQYWSAPSDKEGYSGV 131 (318)
T ss_dssp BCTTSCBCCEEEEEEECSSHHHHHHTTHHHHHHHHCCSEEEEECCCCCC------------CCCEEEEECC-----CCCE
T ss_pred CCCCCCCCceEEEEEecCcchhhhhhhHHHHHHhhCCCEEEEEEccCchhhccHHHHh-cCCCceEEEecCCCCCccceE
Confidence 3555677789999999999987655558999999999999999998765444433333 5689 777764 334566799
Q ss_pred EEEEeccCceEEecCCCCCC-CCcceEEEEeCCEEEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhhcCCCCEEEEccC
Q psy6130 142 GLYTKVKPNKVTYGLGTKNE-HYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDL 220 (295)
Q Consensus 142 ailsk~~~~~~~~~~~~~~~-~~~r~i~~~~~~~~l~~vy~p~~~~~~~~~~~r~~~~~~l~~~l~~l~~~~pvIl~GDF 220 (295)
|||||.+++.+...+..... .++|++.+++..+.|+++|+|+......++++|..|+..|..++..+....|+||||||
T Consensus 132 ailsr~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~v~~vh~p~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~pvIl~GDF 211 (318)
T 1hd7_A 132 GLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDL 211 (318)
T ss_dssp EEEESSCCSEEEESCSCGGGSSSSCEEEEECSSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred EEEEcCCceeEEecCCCcccCCCCcEEEEEcCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHHhcccCCCEEEEeeC
Confidence 99999998877665433222 57888889999999999999987665567778888989898888776434899999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHH-HHHHhCCceeeecccCCCCCCcccccCCCCCCCccCCCccc-cccC
Q psy6130 221 NVSHKPIDLANPTTNTRSAGFTIEERDSF-SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCT-NYFG 294 (295)
Q Consensus 221 N~~~~~~D~~~~~~~~~~~~~~~~e~~~~-~~ll~~gl~D~~r~~~p~~~~~yT~~s~~~~~~~~~~~~~R-Dy~~ 294 (295)
|+.+.++|..++..+.+..||++.++..| ..|++.||+|+|+.++|+..+.||||+++. +.++.+.++| |||+
T Consensus 212 N~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~ll~~~l~D~~r~~~p~~~~~~T~~~~~~-~~~~~~~~~rID~il 286 (318)
T 1hd7_A 212 NVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMM-NARSKNVGWRLDYFL 286 (318)
T ss_dssp SCCCSGGGBSCHHHHTTSTTSCHHHHHHHHHHHHHTTCEEHHHHHCTTCTTCCSBCCSGG-GHHHHTCCBCCEEEE
T ss_pred CCCChhhhccChhhcCCCCCcCHHHHHHHHHHHhhCCCEEeehhhCCCCCCCcceECCcC-CCcccCCceEEEEEE
Confidence 99998888877776777889999999999 999988999999999997654599999988 8887889999 9985
No 3
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=100.00 E-value=2e-40 Score=312.55 Aligned_cols=224 Identities=31% Similarity=0.499 Sum_probs=177.3
Q ss_pred CCCceEEEEEecCCcchhhhh---hHHHHHhhcCCcEEEEcccCCCCCCCCh--hhhhcCCCCeEEEec-CCCCCcceEE
Q psy6130 69 EEPNFKIASWNVAGLRACVKK---EGLDYIKKEDADIFCLQETKCHETQLPP--EVKMKFPEYKTYWLS-SPKAGYAGVG 142 (295)
Q Consensus 69 ~~~~lkI~TwNv~g~~~~~~~---~~~~~i~~~~pDIi~LQE~~~~~~~~~~--~~~~~~~gy~~~~~~-~~~~g~~Gva 142 (295)
....|||+||||+|++.+.++ .++++|.+++|||||||||+.....+.. .+.. ..||+.++.. .+..+++|||
T Consensus 146 ~~~~LKI~TwNVnGl~~~~kr~~~~i~~~I~~~~pDIVcLQEtk~~~~~~~~~~~la~-~~GY~~~~~~~~~~~g~~GVA 224 (467)
T 2j63_A 146 PSRMYKFITWNVAGLRGLLKKNASALRAFMEAEKPDVLCLQETKLNVDEADANATLGV-VDGYSFVDHPCAFKRGYSGTR 224 (467)
T ss_dssp TTTEEEEEEEECSCHHHHHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHHHHHTSSC-CTTEEEEEECCSSSTTSCCEE
T ss_pred CCCCeEEEEEEcCCCcccccccHHHHHHHHHHcCCCEEEEEecccchhccchHHHHhh-cCCceEEEecccCCCCcceEE
Confidence 456799999999999876643 4889999999999999999976644432 1222 4689766664 2456788999
Q ss_pred EEEeccCc------eEEecCCC-----------------CCC-CCcceEEEEe----------CCEEEEEEecCCCCCCc
Q psy6130 143 LYTKVKPN------KVTYGLGT-----------------KNE-HYGRNCNSNI----------VNTFYIRKNVPNAGAGL 188 (295)
Q Consensus 143 ilsk~~~~------~~~~~~~~-----------------~~~-~~~r~i~~~~----------~~~~l~~vy~p~~~~~~ 188 (295)
||||++++ .+...+.. ... .++|+|.+++ ..|.|+|+|+|+.+...
T Consensus 225 IlsR~pi~~~~l~~~~~~~~~~p~~~~~~~~~gs~~~~~~~~D~egR~I~a~~~~~g~~~~~~~~~~vinvYlP~~~~~~ 304 (467)
T 2j63_A 225 TYMKNSTTVKGLHARCTRGFALPSEPQADAAAGSRVLVEGAGDEEGRVLTTFLSPDPDSASSSSRIALVNTYVANSGMGL 304 (467)
T ss_dssp EEEECCCCCCTSCCEEEESSCCCCC-----------CCCCCCCTTCCEEEEEECSSCCC----CCEEEEEEECCCCCTTS
T ss_pred EEEeCCccccccceeeeeccccccccccccccccccccccccCCCCcEEEEEEEeCCcccccCceEEEEEEECCCCCcch
Confidence 99999874 23333321 112 6889988887 67999999999987666
Q ss_pred ccHHHHH-HHHHHHHHHHHhhc-------------------CCCCEEEEccCCCCCCCCCCCC---CCCCCCCCCCCHHH
Q psy6130 189 KTLDKRL-EWDKLFHEHLVKLD-------------------AEKPVILIGDLNVSHKPIDLAN---PTTNTRSAGFTIEE 245 (295)
Q Consensus 189 ~~~~~r~-~~~~~l~~~l~~l~-------------------~~~pvIl~GDFN~~~~~~D~~~---~~~~~~~~~~~~~e 245 (295)
.++.+|. .|+.+|..++..+. ...|+|||||||+.+.++|..+ ++.+.+.++|+++|
T Consensus 305 ~r~~~K~~~~~~~L~~~l~~l~~~~~~~~~~r~~~a~g~~~~~~pvIL~GDFN~~p~~~D~~~~~~~~~~~~~~gf~~~e 384 (467)
T 2j63_A 305 TRLPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAERDYDRYYAGTFKSMQECSGFAPEE 384 (467)
T ss_dssp TTHHHHHHTHHHHHHHHHHHHHHHHTTTTC----------CCSCEEEEEEECCCCCSTTSBCCCSCHHHHTTSTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccccccchhhhhcccccCCcEEEeccccCCCchhhhccccchhhcccccccCHHH
Confidence 7777787 45577777777653 3579999999999999999877 56667788999999
Q ss_pred HHHHHHHH-hCCceeeecccCCCCCCcccccCCCCCCCccCCCccc-cccC
Q psy6130 246 RDSFSSLL-DKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCT-NYFG 294 (295)
Q Consensus 246 ~~~~~~ll-~~gl~D~~r~~~p~~~~~yT~~s~~~~~~~~~~~~~R-Dy~~ 294 (295)
|++|..++ +.||+|+||.++|+..+.||||+++. +++..|.||| ||||
T Consensus 385 r~~~~~lL~~~gL~DafR~~~p~~~~~yTw~s~r~-~~~~~n~g~RIDyIl 434 (467)
T 2j63_A 385 RMSFRETMQRTNSVDIFRQLYPQAGPVYSFWSQRI-NGRPRNLGWRLDYFV 434 (467)
T ss_dssp HHHHHHHHHHTTEEEHHHHHCTTBCSCCSBCCTTT-TTTTTTCCBCCEEEE
T ss_pred HHHHHHHHhhCCCEEehHhhCCCCCCCccccCCCC-CcccCCCCceeEEEE
Confidence 99999988 46999999999997654699999999 9998999999 9985
No 4
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=100.00 E-value=8.1e-38 Score=276.99 Aligned_cols=228 Identities=48% Similarity=0.864 Sum_probs=184.1
Q ss_pred CCCCCCCceEEEEEecCCcchhhhhhHHHHHhhcCCcEEEEcccCCCCCCCChhhhhcCCCC-eEEEec-CCCCCcceEE
Q psy6130 65 NKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY-KTYWLS-SPKAGYAGVG 142 (295)
Q Consensus 65 ~~~~~~~~lkI~TwNv~g~~~~~~~~~~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~~~~gy-~~~~~~-~~~~g~~Gva 142 (295)
++......|+|+||||+|++...++.++++|++++|||||||||+.....+...+.. ..|| +.++.. ....|+.|++
T Consensus 21 ~~~~~~~~l~v~t~Ni~~~~~~~~~~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~-~~gy~~~~~~~~~~~~g~~Gva 99 (285)
T 2o3h_A 21 SPSGKPATLKIASWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQE-LPGLSHQYWSAPSDKEGYSGVG 99 (285)
T ss_dssp CTTSCBCCEEEEEEECSSHHHHHHTTHHHHHHHHCCSEEEEECCCCCTTSCCGGGGG-CGGGCEEEEECBC--CCSCCEE
T ss_pred CCCCCccceEEEEEecccChhhhhhhHHHHHHhcCCCEEEEEEeecchhhccHHHHh-ccCCcEEEEecccCCcccceEE
Confidence 345567789999999999987655458999999999999999998776555544443 5689 777764 3345667999
Q ss_pred EEEeccCceEEecCCCCCC-CCcceEEEEeCCEEEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhhcCCCCEEEEccCC
Q psy6130 143 LYTKVKPNKVTYGLGTKNE-HYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLN 221 (295)
Q Consensus 143 ilsk~~~~~~~~~~~~~~~-~~~r~i~~~~~~~~l~~vy~p~~~~~~~~~~~r~~~~~~l~~~l~~l~~~~pvIl~GDFN 221 (295)
||||.+++.+...+..... .++|++.+.+..+.|+++|+|+......++++|..|+..|.++++.+....|+|||||||
T Consensus 100 ilsr~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~v~~~h~p~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~p~Il~GDFN 179 (285)
T 2o3h_A 100 LLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLN 179 (285)
T ss_dssp EEESSCCSEEEESCSCGGGSSBCCEEEEECSSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHHHHTTSCEEEEEECS
T ss_pred EEEccChHHeeeccCCcccCCCCcEEEEEeCCEEEEEEEcCCCCCcchhHHHHHHHHHHHHHHHHhhccCCCEEEEEECC
Confidence 9999998877655432222 578888888899999999999876655677788888889988888765568999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHH-HHHHhCCceeeecccCCCCCCcccccCCCCCCCccCCCccc-cccC
Q psy6130 222 VSHKPIDLANPTTNTRSAGFTIEERDSF-SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCT-NYFG 294 (295)
Q Consensus 222 ~~~~~~D~~~~~~~~~~~~~~~~e~~~~-~~ll~~gl~D~~r~~~p~~~~~yT~~s~~~~~~~~~~~~~R-Dy~~ 294 (295)
+.+..+|.+++..+.+..|+++.|+..| ..+++.||+|+|+.++|+..+.||||+++. +.+..+.++| |||+
T Consensus 180 ~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~D~~~~~~~~~~~~~T~~~~~~-~~~~~~~~~rID~i~ 253 (285)
T 2o3h_A 180 VAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMM-NARSKNVGWRLDYFL 253 (285)
T ss_dssp CCCSGGGBSCTTTCTTSTTSCHHHHHHHHHHHHHTTCEEHHHHHCTTCCSCCSBCCSST-THHHHTCCBCCEEEE
T ss_pred CCCchhhccChhhcCCCCCcCHHHHHHHHHHHhcCCCEEEEEecCCCCCCcEeEecCcC-CccccCceeEEEEEE
Confidence 9998888877777777789999999999 999988999999999987654599999988 8777788999 9975
No 5
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=100.00 E-value=2.1e-36 Score=263.44 Aligned_cols=216 Identities=25% Similarity=0.454 Sum_probs=172.9
Q ss_pred eEEEEEecCCcchhhhhhHHHHHhhcCCcEEEEcccCCCCCCCChhhhhcCCCCeEEEecCCCCCcceEEEEEeccCceE
Q psy6130 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKV 152 (295)
Q Consensus 73 lkI~TwNv~g~~~~~~~~~~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~~~~gy~~~~~~~~~~g~~Gvailsk~~~~~~ 152 (295)
|||+||||+|++.... .++++|++++|||||||||+.....+...... ..||+.++. +..++.|+|||||.++..+
T Consensus 2 lrv~t~Nv~g~~~~~~-~i~~~i~~~~~Dii~lQE~~~~~~~~~~~~~~-~~gy~~~~~--~~~~~~G~ailsr~~~~~~ 77 (257)
T 2voa_A 2 LKIATFNVNSIRSRLH-IVIPWLKENKPDILCMQETKVENRKFPEADFH-RIGYHVVFS--GSKGRNGVAIASLEEPEDV 77 (257)
T ss_dssp EEEEEEECSCGGGTHH-HHHHHHHHHCCSEEEEECCCCCGGGCCHHHHH-TTTCEEEEE--EETTEEEEEEEESSCCEEE
T ss_pred eEEEEEecCChHHHHH-HHHHHHhhcCCCEEEEEEeecchhhcCHHHhh-hCCCcEEEc--CCCCccEEEEEEccChHHh
Confidence 8999999999987654 58999999999999999998755445433333 578976665 3456679999999987655
Q ss_pred EecCCCCCCCCcceEEEEeCCEEEEEEecCCCCC-CcccHHHHHHHHHHHHHHHHhh-cCCCCEEEEccCCCCCCCCCCC
Q psy6130 153 TYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGA-GLKTLDKRLEWDKLFHEHLVKL-DAEKPVILIGDLNVSHKPIDLA 230 (295)
Q Consensus 153 ~~~~~~~~~~~~r~i~~~~~~~~l~~vy~p~~~~-~~~~~~~r~~~~~~l~~~l~~l-~~~~pvIl~GDFN~~~~~~D~~ 230 (295)
...++.....++|++.+++..+.|+++|+|+... +..++.+|..|++.|..+++.+ ....|+|||||||+.+.+.|..
T Consensus 78 ~~~~~~~~~~~~r~l~~~~~~~~v~~~h~p~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~p~Il~GDFN~~~~~~d~~ 157 (257)
T 2voa_A 78 SFGLDSEPKDEDRLIRAKIAGIDVINTYVPQGFKIDSEKYQYKLQWLERLYHYLQKTVDFRSFAVWCGDMNVAPEPIDVH 157 (257)
T ss_dssp EESCSSSSCCGGGEEEEEETTEEEEEEECCCCSCTTSHHHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECSCCCSGGGBS
T ss_pred eecCCCCccccCcEEEEEECCEEEEEEEeCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeeCCCCCchhhcc
Confidence 5444321112678888899999999999998764 3355667778888888888765 3578999999999999888887
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCceeeecccCCCCCCcccccCC-CCCCCccCCCccc-cccC
Q psy6130 231 NPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSY-MSKTARSRNTGCT-NYFG 294 (295)
Q Consensus 231 ~~~~~~~~~~~~~~e~~~~~~ll~~gl~D~~r~~~p~~~~~yT~~s~-~~~~~~~~~~~~R-Dy~~ 294 (295)
++..+.+..++++.+++.+..+++.||+|+|+.++|... .||||++ +. +.+..+.++| |||+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~D~~~~~~p~~~-~~T~~~~~~~-~~~~~~~~~rID~i~ 221 (257)
T 2voa_A 158 SPDKLKNHVCFHEDARRAYKKILELGFVDVLRKIHPNER-IYTFYDYRVK-GAIERGLGWRGDAIL 221 (257)
T ss_dssp CGGGCTTSTTTCHHHHHHHHHHHTTTCEEHHHHHSTTCC-CCSBCCTTST-TTTTTTCCBCCEEEE
T ss_pred ChhHhCCCCCCCHHHHHHHHHHHHcCcEeeehhhCCCCC-CcceeccccC-CceecCceEEEEEEE
Confidence 777777778999999999999998899999999999865 6999999 88 8887789999 9975
No 6
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=100.00 E-value=1e-36 Score=265.35 Aligned_cols=219 Identities=31% Similarity=0.537 Sum_probs=176.1
Q ss_pred eEEEEEecCCcchhhhhhHHHHHhhcCCcEEEEcccCCCCCCCChhhhhcCCCCeEEEecCCCCCcceEEEEEeccCceE
Q psy6130 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKV 152 (295)
Q Consensus 73 lkI~TwNv~g~~~~~~~~~~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~~~~gy~~~~~~~~~~g~~Gvailsk~~~~~~ 152 (295)
|||+||||+|++...++.++++|+.++|||||||||+.....+...+.. ..||..++...+..++.|+|||||+++..+
T Consensus 2 l~v~t~Ni~~~~~~~~~~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~-~~gy~~~~~~~~~~~~~G~ailsr~~~~~~ 80 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKKGFYEYIAASGADIVCVQELKAQEADLSADMKN-PHGMHGHWHCAEKRGYSGVAVYSKRKPDNV 80 (259)
T ss_dssp EEEEEEECSSHHHHHHTTHHHHHHHTTCSEEEEECCCCCGGGCCHHHHS-GGGCEEEEECCSSTTCCCEEEEESSCCSEE
T ss_pred cEEEEEeeccHHHHHHhHHHHHHHhcCCCEEEEEEecchhhccChhhcc-ccCCeEEEeccCCCCcceEEEEEecCceeE
Confidence 8999999999987665458999999999999999998765555544443 568966655434456679999999998876
Q ss_pred EecCCCCCC-CCcceEEEEeCCEEEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhhc-CCCCEEEEccCCCCCCCCCCC
Q psy6130 153 TYGLGTKNE-HYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLD-AEKPVILIGDLNVSHKPIDLA 230 (295)
Q Consensus 153 ~~~~~~~~~-~~~r~i~~~~~~~~l~~vy~p~~~~~~~~~~~r~~~~~~l~~~l~~l~-~~~pvIl~GDFN~~~~~~D~~ 230 (295)
...++.... ..+|++.+.+..+.|+++|+|+......+..+|..|+..|.++++.+. .+.|+|||||||+.+.+.|..
T Consensus 81 ~~~~~~~~~~~~~r~~~~~~~~~~v~~~h~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~d~~ 160 (259)
T 2jc5_A 81 QIGMGIEEFDREGRFVRCDFGRLSVISLYLPSGSSAEERQQVKYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLK 160 (259)
T ss_dssp EESCSCHHHHTTCCEEEEEETTEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEECCCCCSGGGBS
T ss_pred EeCCCCCccCCCCeEEEEEcCCEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCchhhcc
Confidence 654432211 567888889999999999999977655566667778888888887653 478999999999999888887
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHH-hCCceeeecccCCCCCCcccccCCCCCCCccCCCccc-cccC
Q psy6130 231 NPTTNTRSAGFTIEERDSFSSLL-DKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCT-NYFG 294 (295)
Q Consensus 231 ~~~~~~~~~~~~~~e~~~~~~ll-~~gl~D~~r~~~p~~~~~yT~~s~~~~~~~~~~~~~R-Dy~~ 294 (295)
++..+.+..++++++++.+..++ +.||+|+|+.++|... .||||+++. +.+..+.++| |||+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~d~~~~~~~~~~-~~T~~~~~~-~~~~~~~~~rID~i~ 224 (259)
T 2jc5_A 161 NWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWRTLYPDVP-GYTWWSNRG-QAYAKDVGWRIDYQM 224 (259)
T ss_dssp CSTTCTTSTTSCHHHHHHHHHHHHTTCCEEHHHHHCTTCC-CCCEESCSS-HHHHTTCEECCEEEE
T ss_pred ChhhcCCCCCcCHHHHHHHHHHhccCCcEEeeHhhCCCCC-CccEECCcC-CCccCCCeeEEEEEE
Confidence 77777777899999999999998 5699999999999766 499999988 7777788999 9975
No 7
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=100.00 E-value=3.8e-36 Score=261.23 Aligned_cols=216 Identities=23% Similarity=0.397 Sum_probs=173.4
Q ss_pred eEEEEEecCCcchhhhhhHHHHHhhcCCcEEEEcccCCCCCCCChhhhhcCCCCeEEEecCCCCCcceEEEEEeccCceE
Q psy6130 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKV 152 (295)
Q Consensus 73 lkI~TwNv~g~~~~~~~~~~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~~~~gy~~~~~~~~~~g~~Gvailsk~~~~~~ 152 (295)
|||+||||+|++.... .++++|++++|||||||||+.....+...... ..||..++. +..++.|++|+||.++..+
T Consensus 1 lrv~t~Nv~~~~~~~~-~i~~~i~~~~~DIv~LQE~~~~~~~~~~~~~~-~~gy~~~~~--~~~~~~G~ailsr~~~~~~ 76 (256)
T 2jc4_A 1 MKITTWNVNSLNVRLP-QVQNLLADNPPDILVLQELKLDQDKFPAAALQ-MMGWHCVWS--GQKTYNGVAIVSRSVPQDV 76 (256)
T ss_dssp CEEEEEECSCHHHHHH-HHHHHHHSSCCSEEEEECCCSCGGGSCHHHHH-TTTCEEEEE--CCSSSCCEEEEESSCCEEE
T ss_pred CEEEEEEcCCcHHHHH-HHHHHHHhcCCCEEEEEeeccchhcCCHhHHh-hcCCeEEEC--CCCcceEEEEEECCChHHh
Confidence 6999999999987653 58899999999999999998766544444343 578976665 3455679999999987655
Q ss_pred EecCCCCCC-CCcceEEEEeCCEEEEEEecCCCCC-CcccHHHHHHHHHHHHHHHHhh-cCCCCEEEEccCCCCCCCCCC
Q psy6130 153 TYGLGTKNE-HYGRNCNSNIVNTFYIRKNVPNAGA-GLKTLDKRLEWDKLFHEHLVKL-DAEKPVILIGDLNVSHKPIDL 229 (295)
Q Consensus 153 ~~~~~~~~~-~~~r~i~~~~~~~~l~~vy~p~~~~-~~~~~~~r~~~~~~l~~~l~~l-~~~~pvIl~GDFN~~~~~~D~ 229 (295)
...++.... .+++++.+.+..+.|+++|+|+... ...++++|..|++.|.++++.+ ....|+|||||||+.+.+.|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~il~GDFN~~~~~~d~ 156 (256)
T 2jc4_A 77 HFGLPALPDDPQRRVIAATVSGVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADC 156 (256)
T ss_dssp EESCTTSTTCCSCCEEEEEETTEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHHHHHTTCSSEEEEEECCCCCSGGGB
T ss_pred eecCCCCccCCcCcEEEEEeCCEEEEEEEecCCCCCCcHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeECCCCCchhhc
Confidence 554443222 5778888889999999999998765 2345667788888888888776 457899999999999988787
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhCCceeeecccCCCCCCcccccCCCCCCCccCCCccc-cccC
Q psy6130 230 ANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCT-NYFG 294 (295)
Q Consensus 230 ~~~~~~~~~~~~~~~e~~~~~~ll~~gl~D~~r~~~p~~~~~yT~~s~~~~~~~~~~~~~R-Dy~~ 294 (295)
.++..+.+..++++.+++.+..|++.||+|+|+.++|... .||||+++. +.++.+.++| |||+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~D~~~~~~~~~~-~~T~~~~~~-~~~~~~~~~rID~i~ 220 (256)
T 2jc4_A 157 YDPEKWHEKIHCSSVERQWFQNLLDLGLTDSLRQVHPEGA-FYTWFDYRG-AMFQRKLGLRIDHIL 220 (256)
T ss_dssp SSGGGGTTCTTSCHHHHHHHHHHHTTTCEEHHHHHCCSSC-CCCBCCTTT-THHHHTCCBCCEEEE
T ss_pred cChhHhCCCCCcCHHHHHHHHHHHhcCcEEhhhhhCCCCC-ceeeEcCCC-CccccCcEEEEEEEE
Confidence 7766666778899999999999998899999999998765 699999988 8777788999 9975
No 8
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=100.00 E-value=2.3e-35 Score=257.95 Aligned_cols=217 Identities=26% Similarity=0.417 Sum_probs=167.5
Q ss_pred eEEEEEecCCcchhhhhhHHHHHhhcCCcEEEEcccCCCCCCCChhhhhcCCCCeEEEecCCCCCcceEEEEEeccCceE
Q psy6130 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKV 152 (295)
Q Consensus 73 lkI~TwNv~g~~~~~~~~~~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~~~~gy~~~~~~~~~~g~~Gvailsk~~~~~~ 152 (295)
|||+||||+|++.... .++++|+..+|||||||||+.....+...+.. ..||..++.. ..++.|+|||||.++..+
T Consensus 1 lrv~t~Nv~~~~~~~~-~i~~~i~~~~~Dii~LQE~~~~~~~~~~~~l~-~~gy~~~~~~--~~~~~G~ailsr~~~~~~ 76 (268)
T 1ako_A 1 MKFVSFNINGLRARPH-QLEAIVEKHQPDVIGLQETKVHDDMFPLEEVA-KLGYNVFYHG--QKGHYGVALLTKETPIAV 76 (268)
T ss_dssp CEEEEEECSCGGGCHH-HHHHHHHHHCCSEEEEECCCCCGGGCCHHHHH-HTTCEEEEEE--ETTEEEEEEEESSCCSEE
T ss_pred CEEEEEehhHHHHHHH-HHHHHHHHcCCCEEEEEeccCChhhCCHhHhc-cCCCcEEEeC--CCCcceEEEEEecCccee
Confidence 6999999999977543 58899999999999999998765445444333 4689666552 345689999999998887
Q ss_pred EecCCCCCC-CCcceEEEEe----CCEEEEEEecCCCCCCc--ccHHHHHHHHHHHHHHHHhh-cCCCCEEEEccCCCCC
Q psy6130 153 TYGLGTKNE-HYGRNCNSNI----VNTFYIRKNVPNAGAGL--KTLDKRLEWDKLFHEHLVKL-DAEKPVILIGDLNVSH 224 (295)
Q Consensus 153 ~~~~~~~~~-~~~r~i~~~~----~~~~l~~vy~p~~~~~~--~~~~~r~~~~~~l~~~l~~l-~~~~pvIl~GDFN~~~ 224 (295)
...++.... ..++++.+.+ ..+.|+++|+|+..... .+...|..|+..|.++++.+ ....|+|||||||+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~ 156 (268)
T 1ako_A 77 RRGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISP 156 (268)
T ss_dssp EESSTTCCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECCCCC
T ss_pred eeCCCCcccccCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHHhhhCCCCEEEEeECCCCC
Confidence 665543222 4466666665 37999999999865432 34567888888888888876 4578999999999998
Q ss_pred CCCCCCCCCCCC------CCCCCCHHHHHHHHHHHhCCceeeecccCCCCCCcccccCCCCCCCccCCCccc-cccC
Q psy6130 225 KPIDLANPTTNT------RSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCT-NYFG 294 (295)
Q Consensus 225 ~~~D~~~~~~~~------~~~~~~~~e~~~~~~ll~~gl~D~~r~~~p~~~~~yT~~s~~~~~~~~~~~~~R-Dy~~ 294 (295)
.+.|...+..+. +..+|++.|++.+..+++.||+|+|+.++|...+.||||++++ +.++.+.++| |||+
T Consensus 157 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~gl~D~~~~~~~~~~~~~T~~~~~~-~~~~~~~~~riD~il 232 (268)
T 1ako_A 157 TDLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRS-KGFDDNRGLRIDLLL 232 (268)
T ss_dssp SGGGBCSCHHHHHHHHHHTBTTSCHHHHHHHHHHHHTTEEEHHHHHSTTCCSCCSBCCTTT-THHHHTCCBCCEEEE
T ss_pred chhcccCcccChhhhccCCCcCcCHHHHHHHHHHhcCCCEEeEhhhCCCCCCCeeEeCCcC-CccccCceEEEEEEE
Confidence 877765432211 4567899999999999999999999999998665699999998 8887788999 9985
No 9
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=99.97 E-value=1.3e-30 Score=223.61 Aligned_cols=196 Identities=21% Similarity=0.292 Sum_probs=140.4
Q ss_pred CCCceEEEEEecCCcchhhhh-hHHHHHhhcCCcEEEEcccCCCCCCCChhhhhcCCCCe-EEEecCCCCCcceEEEEEe
Q psy6130 69 EEPNFKIASWNVAGLRACVKK-EGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK-TYWLSSPKAGYAGVGLYTK 146 (295)
Q Consensus 69 ~~~~lkI~TwNv~g~~~~~~~-~~~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~~~~gy~-~~~~~~~~~g~~Gvailsk 146 (295)
.++.|||+||||+|++...++ .+.++|++++|||||||||+.....+.. + . ..+|. .|+.. +..+++|+||+||
T Consensus 4 ~~~~lri~t~Nv~g~~~~~~~~~~~~~i~~~~~DIv~LQE~~~~~~~~~~-l-~-~~~y~~~~~~~-~~~~~~Gvail~r 79 (238)
T 1vyb_A 4 SNSHITILTLNINGLNSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTHR-L-K-IKGWRKIYQAN-GKQKKAGVAILVS 79 (238)
T ss_dssp CCCCEEEEEEECSCCCSHHHHHHHHHHHHHHCCSEEEEECCCCCTTSGGG-C-C-CTTCCEEEEEC-CSSSSCCEEEEEC
T ss_pred CCCcceEEEEecccCCchhhHHHHHHHHHHcCCCEEEEecccCCCCCchh-H-h-hCCCCeEEEcc-CCCCCceEEEEEe
Confidence 466799999999999876543 5889999999999999999876544332 2 2 56884 44443 2334579999999
Q ss_pred cc-CceEEecCCCCCCCCcceEEEEe----CCEEEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhhcCCCCEEEEccCC
Q psy6130 147 VK-PNKVTYGLGTKNEHYGRNCNSNI----VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLN 221 (295)
Q Consensus 147 ~~-~~~~~~~~~~~~~~~~r~i~~~~----~~~~l~~vy~p~~~~~~~~~~~r~~~~~~l~~~l~~l~~~~pvIl~GDFN 221 (295)
.+ ++.+.....+ .++|++.+.+ ..+.|+++|+|+... .++++++.+.+... ...|+|||||||
T Consensus 80 ~~~~~~~~~~~~~---~~~r~i~~~~~~~~~~~~v~~~y~p~~~~--------~~~~~~l~~~l~~~-~~~~~Il~GDFN 147 (238)
T 1vyb_A 80 DKTDFKPTKIKRD---KEGHYIMVKGSIQQEELTILNIYAPNTGA--------PRFIKQVLSDLQRD-LDSHTLIMGDFN 147 (238)
T ss_dssp TTCCCEEEEEEEC---TTSSEEEEEEEETTEEEEEEEEECCSSSH--------HHHHHHHHHHTTTT-CCTTEEEEEECS
T ss_pred CCCCccccceeEc---CCCcEEEEEEEeCCCcEEEEEEecCCCCc--------HHHHHHHHHHHHhc-cCCCEEEEccCC
Confidence 87 4544321111 4677777664 479999999998542 12445555555443 368999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-hCCceeeecccCCCCCCcccccCCCCCCCccCCCccc-cccC
Q psy6130 222 VSHKPIDLANPTTNTRSAGFTIEERDSFSSLL-DKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCT-NYFG 294 (295)
Q Consensus 222 ~~~~~~D~~~~~~~~~~~~~~~~e~~~~~~ll-~~gl~D~~r~~~p~~~~~yT~~s~~~~~~~~~~~~~R-Dy~~ 294 (295)
+.+.++|... .++.+.+++.|..++ +.||+|+|+..+|... .||||+++. +. ++| |||+
T Consensus 148 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~-~~T~~~~~~-~~-----~~rID~i~ 208 (238)
T 1vyb_A 148 TPLSTLDRST-------RQKVNKDTQELNSALHQADLIDIYRTLHPKST-EYTFFSAPH-HT-----YSKIDHIV 208 (238)
T ss_dssp SCSSGGGBTT-------CCCCCHHHHHHHHHHHHTTEEEHHHHHCTTCC-CCSEEETTT-TE-----EECCEEEE
T ss_pred CCCCccccCC-------CCCCcHHHHHHHHHHhhCCCEEhhHhhCCCCC-ceeEEcCCC-Cc-----ccceEEEE
Confidence 9887766543 345667778899888 5699999999999766 599999876 43 459 9975
No 10
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.95 E-value=2.3e-28 Score=224.23 Aligned_cols=199 Identities=15% Similarity=0.205 Sum_probs=129.9
Q ss_pred CCCCCCCCceEEEEEecCCcchh--h--hhhHHHHHhhcCCcEEEEcccCCCCCCCChhhhhcCCCCeEEEecCCCCCcc
Q psy6130 64 KNKLGEEPNFKIASWNVAGLRAC--V--KKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGYA 139 (295)
Q Consensus 64 ~~~~~~~~~lkI~TwNv~g~~~~--~--~~~~~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~~~~gy~~~~~~~~~~g~~ 139 (295)
+++...+..|||+||||+|+... . .+.++++|+.++|||||||||.... + ..+.....+|..++. +..+++
T Consensus 111 ~~~~~~~~~lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~~~PDIV~LQEv~~~~--~-~~l~~~~~~y~~~~~--~~~~~~ 185 (362)
T 4gew_A 111 TAEDLKGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDRD--L-APIDKLQSLYKIYYS--NKGCQY 185 (362)
T ss_dssp --CTTTTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECSTT--C-HHHHGGGGTEEEEES--STTSSS
T ss_pred CCCCCCCCeEEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEcCChhH--h-HHHHHhcCCceEEeC--CCCCCc
Confidence 34556778899999999998532 1 2358899999999999999996433 2 223321445655554 445567
Q ss_pred eEEEEEeccCceEEec-CCCCCC-CCcceEEE--Ee--CCEEEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhh---cC
Q psy6130 140 GVGLYTKVKPNKVTYG-LGTKNE-HYGRNCNS--NI--VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKL---DA 210 (295)
Q Consensus 140 Gvailsk~~~~~~~~~-~~~~~~-~~~r~i~~--~~--~~~~l~~vy~p~~~~~~~~~~~r~~~~~~l~~~l~~l---~~ 210 (295)
|++||+|+++...... +..... ....++.+ .+ ..+.|+++|+++.... ...|..++..+..++..+ ..
T Consensus 186 G~aIlsk~~i~~~~~~~~~~~~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~~---~~~R~~Q~~~l~~~~~~~~~~~~ 262 (362)
T 4gew_A 186 YTAILVSKMFDVEKHDVIHFQNSGMYRTLQILEGSIGGLKVFLLNTHLESTREH---RPQRCAQFGFCMDKVREIIAQNP 262 (362)
T ss_dssp EEEEEEETTEEEEEEEEEECTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGG---HHHHHHHHHHHHHHHHHHHHHCT
T ss_pred eEEEEEeccCccccccccCCCCCcccceEEEEEEEECCEEEEEEEecCCccccc---hhHHHHHHHHHHHHhHhhhhcCC
Confidence 9999999864332221 111111 22223333 33 3699999999886533 245556666665555543 45
Q ss_pred CCCEEEEccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhCCceeeecccCCCCCCcccccCCCCCCCccC--CCc
Q psy6130 211 EKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSR--NTG 288 (295)
Q Consensus 211 ~~pvIl~GDFN~~~~~~D~~~~~~~~~~~~~~~~e~~~~~~ll~~gl~D~~r~~~p~~~~~yT~~s~~~~~~~~~--~~~ 288 (295)
+.|+|||||||..+.+.+. ...||.|+|+.+++.....||||++++ ..... ..+
T Consensus 263 ~~pvIl~GDFN~~p~~~~~-----------------------~~~gl~Da~~~~~~~~~~~~Tw~~~~n-~~~~~~~~~~ 318 (362)
T 4gew_A 263 GALVFFGGDLNLRDEEVSR-----------------------VPDGVKDAWEAAGSDNKTKFTWDTFKN-DNKQGFHGAK 318 (362)
T ss_dssp TCEEEEEEECCCCGGGCCC-----------------------CCTTCEEHHHHTTCCGGGCCSEETTTC-TTSCCSSCCE
T ss_pred CCCeEEeecCCCCCcccch-----------------------hcchHHHHHHHhCCCCCCCcCcccccC-cccccCCCCC
Confidence 7899999999987754321 134899999999876655799999877 55543 356
Q ss_pred cc-cccC
Q psy6130 289 CT-NYFG 294 (295)
Q Consensus 289 ~R-Dy~~ 294 (295)
+| |||+
T Consensus 319 ~RIDyIf 325 (362)
T 4gew_A 319 MRFDRLY 325 (362)
T ss_dssp ECCEEEE
T ss_pred cceEEEE
Confidence 89 9975
No 11
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.95 E-value=2.6e-28 Score=211.66 Aligned_cols=182 Identities=12% Similarity=0.030 Sum_probs=124.8
Q ss_pred CceEEEEEecCCcchhhhhhHHHHHhhcCCcEEEEcccCCCCCCCChhhhhcCCCCeEEEecCCCCCcceEEEEEeccCc
Q psy6130 71 PNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPN 150 (295)
Q Consensus 71 ~~lkI~TwNv~g~~~~~~~~~~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~~~~gy~~~~~~~~~~g~~Gvailsk~~~~ 150 (295)
..|||+||||+|++.... .++++|++++|||||||||+. ..||+ + . +. +++||||+++.+..
T Consensus 6 ~~mki~s~Nvn~~r~~~~-~l~~~l~~~~~DIl~LQEt~~------------~~gy~-~-~--~~-~~~gvail~~~~~~ 67 (240)
T 2ei9_A 6 PRLRIGQINLGGAEDATR-ELPSIARDLGLDIVLVQEQYS------------MVGFL-A-Q--CG-AHPKAGVYIRNRVL 67 (240)
T ss_dssp CEEEEEEEECTTCHHHHH-THHHHHHHHTCSEEEEESCCT------------TSSSE-E-C--CS-SSCSEEEEESSTTS
T ss_pred ccceEEEEecCccHHHHH-HHHHHHHHcCCCEEEeecceE------------cCCce-E-e--cc-CCCCEEEEEecCCc
Confidence 359999999999998765 489999999999999999961 23676 3 3 22 35799999987544
Q ss_pred eEEecCCCCCCCCcceEEEEeCCEEEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCCCCCCC
Q psy6130 151 KVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLA 230 (295)
Q Consensus 151 ~~~~~~~~~~~~~~r~i~~~~~~~~l~~vy~p~~~~~~~~~~~r~~~~~~l~~~l~~l~~~~pvIl~GDFN~~~~~~D~~ 230 (295)
.+...... ....++++.+++..++|+++|+|++... +++..|++.|...+ ...++|||||||+.+..+
T Consensus 68 ~~~~~~~~-~~~~~~~i~i~~~~i~i~svY~P~~~~~----~~~~~~l~~l~~~~----~~~~~Ii~GDfN~~~~~w--- 135 (240)
T 2ei9_A 68 PCAVLHHL-SSTHITVVHIGGWDLYMVSAYFQYSDPI----DPYLHRLGNILDRL----RGARVVICADTNAHSPLW--- 135 (240)
T ss_dssp CEEECGGG-CCSSEEEEEETTTTEEEEEEECCTTSCS----HHHHHHHHHHHHHT----TTSCEEEEEECCCCCGGG---
T ss_pred ceeeeccc-CCCCEEEEEEeeccEEEEEEEcCCCCch----hHHHHHHHHHHHhc----CCCcEEEEEecccccccc---
Confidence 43321111 1134556777778999999999997642 45556665554322 247999999999988543
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCceeeec--ccCCCCCCcccccCCCCCCCccCCCccc-cccC
Q psy6130 231 NPTTNTRSAGFTIEERDSFSSLLDKGFTDSFR--HLYPKRTGAYTYWSYMSKTARSRNTGCT-NYFG 294 (295)
Q Consensus 231 ~~~~~~~~~~~~~~e~~~~~~ll~~gl~D~~r--~~~p~~~~~yT~~s~~~~~~~~~~~~~R-Dy~~ 294 (295)
++..+ ..++++.|++...+++. +|+|+++ .++|... .||||+++. +|| |||+
T Consensus 136 ~~~~~--~~~~~~~~r~~~~~~l~-~~~d~~~l~~~~~~~~-~~T~~s~~~--------~~rID~~l 190 (240)
T 2ei9_A 136 HSLPR--HYVGRGQEVADRRAKME-DFIGARRLVVHNADGH-LPTFSTANG--------ESYVDVTL 190 (240)
T ss_dssp TCCHH--HHSSSCHHHHHHHHHHH-HHHHHTTCEECCCTTC-CCSEEETTE--------EECCEEEE
T ss_pred cCCCC--CCCCcchhhHHHHHHHH-HHHHhcCCEecCCCCC-CceEeCCCC--------ceEEEEEE
Confidence 22221 11455666655555553 7999988 4477544 699999744 589 9975
No 12
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.94 E-value=7.5e-26 Score=196.03 Aligned_cols=191 Identities=11% Similarity=0.000 Sum_probs=117.4
Q ss_pred CCCceEEEEEecCCcchhhhhhHHHHHhhcCCcEEEEcccCCCCCCCChhhhhcCCCCeEEEecCCCCCcceEEEEEecc
Q psy6130 69 EEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTKVK 148 (295)
Q Consensus 69 ~~~~lkI~TwNv~g~~~~~~~~~~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~~~~gy~~~~~~~~~~g~~Gvailsk~~ 148 (295)
....|||+||||++++.... .++++|++++|||||||||+........ . ..+|..++......++.|+|||++..
T Consensus 16 ~~~~lri~s~Nv~~~~~~~~-~l~~~i~~~~~DIv~lQE~~~~~~~~~~---~-~~gy~~~~~~~~~~~~~GvaIl~~~~ 90 (245)
T 1wdu_A 16 NGPPYRVLQANLQRKKLATA-ELAIEAATRKAAIALIQEPYVGGAKSMK---G-FRGVRVFQSTAQGDGTVKAAIAVFDH 90 (245)
T ss_dssp --CCEEEEEEECTTCHHHHH-HHHHHHHHHTCSEEEEESCCC------C---C-CSSCEEEECCCCTTCCCCEEEEECCS
T ss_pred cCcceeeeeeeccccHHHHH-HHHHHHhhcCCCEEEEEcccccCCcccc---C-CCcceEeccccccCCCCCeEEEEECC
Confidence 34579999999999987543 5889999999999999999876533321 1 45786665432233457999999765
Q ss_pred CceEEecCCCCCCCCcc-eEEEE--eCCEEEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCC
Q psy6130 149 PNKVTYGLGTKNEHYGR-NCNSN--IVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHK 225 (295)
Q Consensus 149 ~~~~~~~~~~~~~~~~r-~i~~~--~~~~~l~~vy~p~~~~~~~~~~~r~~~~~~l~~~l~~l~~~~pvIl~GDFN~~~~ 225 (295)
.+.+.. +.... ..+. .+.+. ...+.|+++|+|+.... ..|..+|..+++.+ ...|+|||||||+.+.
T Consensus 91 ~~~~~~-~~~~~-~~~~~~~~i~~~~~~~~v~~vy~p~~~~~-------~~~~~~l~~~~~~~-~~~~~Ii~GDfN~~~~ 160 (245)
T 1wdu_A 91 DLDVIQ-YPQLT-TNNIVVVGIRTRAWEITLVSYYFEPDKPI-------ESYLEQIKRVERKM-GPKRLIFGGDANAKST 160 (245)
T ss_dssp SCEEEE-CTTTC-CSSEEEEEEECSSCEEEEEEEECCTTSCS-------HHHHHHHHHHHHTT-CSSSEEEEEECCCCCG
T ss_pred CcceEE-ecccc-cCCEEEEEEEcCCCcEEEEEEEeCCCCCH-------HHHHHHHHHHHHHh-CCCcEEEEeccccCcc
Confidence 555432 22111 1222 22233 24799999999986521 23445565666554 4689999999999875
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHhC-CceeeecccCCCCCCcccccCCCCCCCccCCCccc-cccC
Q psy6130 226 PIDLANPTTNTRSAGFTIEERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCT-NYFG 294 (295)
Q Consensus 226 ~~D~~~~~~~~~~~~~~~~e~~~~~~ll~~-gl~D~~r~~~p~~~~~yT~~s~~~~~~~~~~~~~R-Dy~~ 294 (295)
.++.. ....+++.|..++.. ||.. +++. ..||||++++ + .+.++| |||+
T Consensus 161 ~~~~~----------~~~~~~~~l~~~~~~~~l~~----~~~~--~~~T~~~~~~-~---~~~~~rID~i~ 211 (245)
T 1wdu_A 161 WWGSK----------EDDARGDQLMGTLGELGLHI----LNEG--DVPTFDTIRG-G---KRYQSRVDVTF 211 (245)
T ss_dssp GGTCS----------SCCHHHHHHHHHHHHHTCEE----CCCS--CCCSEEC---------CCEECCEEEE
T ss_pred cCCCC----------CcCcchHHHHHHHHHCCcEE----ecCC--CCCcEECCCC-C---CCCCCEEEEEE
Confidence 44311 023445667776654 7654 3553 2599999876 4 235889 9975
No 13
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.93 E-value=6.5e-26 Score=195.79 Aligned_cols=197 Identities=14% Similarity=0.185 Sum_probs=123.2
Q ss_pred CCCCCCCceEEEEEecCCcchhh----hhhHHHHHhhcCCcEEEEcccCCCCCCCChhhhhcCCCCeEEEecCCCCCcce
Q psy6130 65 NKLGEEPNFKIASWNVAGLRACV----KKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGYAG 140 (295)
Q Consensus 65 ~~~~~~~~lkI~TwNv~g~~~~~----~~~~~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~~~~gy~~~~~~~~~~g~~G 140 (295)
+...++.+||||||||+|+.... ...++++|++++|||||||||.... + ..+.. ..+++.++.. ...+..|
T Consensus 6 ~~~~~~~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~--~-~~l~~-~~~~~~~~~~-~~~~~~g 80 (256)
T 4fva_A 6 AEDLKGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDRD--L-APIDK-LQSLYKIYYS-NKGCQYY 80 (256)
T ss_dssp --CCTTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECSTT--C-HHHHG-GGGTEEEEES-STTSSSE
T ss_pred CCcCCCCEEEEEEEecCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEecChhH--h-HHHHH-hcCCceEeec-CCCCCcc
Confidence 34557789999999999875321 1248899999999999999996433 2 23333 3344333332 3445579
Q ss_pred EEEEEeccCceEEec---CCCCCCCCcceEEE--Ee--CCEEEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhh---cC
Q psy6130 141 VGLYTKVKPNKVTYG---LGTKNEHYGRNCNS--NI--VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKL---DA 210 (295)
Q Consensus 141 vailsk~~~~~~~~~---~~~~~~~~~r~i~~--~~--~~~~l~~vy~p~~~~~~~~~~~r~~~~~~l~~~l~~l---~~ 210 (295)
++|+++.++...... +.... ....++.+ .. ..+.|+++|+++..... ..+..++..+...+..+ ..
T Consensus 81 ~~il~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~---~~~~~q~~~~~~~~~~~~~~~~ 156 (256)
T 4fva_A 81 TAILVSKMFDVEKHDVIHFQNSG-MYRTLQILEGSIGGLKVFLLNTHLESTREHR---PQRCAQFGFCMDKVREIIAQNP 156 (256)
T ss_dssp EEEEEETTCEEEEEEEEECTTCS-SCCEEEEEEEEETTEEEEEEEEECCCSGGGH---HHHHHHHHHHHHHHHHHHHHST
T ss_pred eEEEEeecccceecccccCCCCc-ccceeEEEEEEeCCeEEEEEEecCCCCCcch---HHHHHHHHHHHHHhhhhhhccC
Confidence 999999865433221 22211 22223333 33 36999999998754432 23344444444444332 45
Q ss_pred CCCEEEEccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhCCceeeecccCCCCCCcccccCCCCCCCccC--CCc
Q psy6130 211 EKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSR--NTG 288 (295)
Q Consensus 211 ~~pvIl~GDFN~~~~~~D~~~~~~~~~~~~~~~~e~~~~~~ll~~gl~D~~r~~~p~~~~~yT~~s~~~~~~~~~--~~~ 288 (295)
+.|+|||||||+.+.+... ...+|.|+|+.+++.....|||++... ..... ..+
T Consensus 157 ~~~vIl~GDfN~~~~~~~~-----------------------~~~~~~d~~~~~~~~~~~~~T~~~~~~-~~~~~~~~~~ 212 (256)
T 4fva_A 157 GALVFFGGDLNLRDEEVSR-----------------------VPDGVKDAWEAAGSDNKTKFTWDTFKN-DNKQGFHGAK 212 (256)
T ss_dssp TCEEEEEEECCCCGGGCCC-----------------------CCTTCEEHHHHTTCCGGGCCSEETTTC-CSSCSCCSCE
T ss_pred CCcEEEeccCCCCcchhhh-----------------------hhcchhhHHHHhCCCCCCCcccccccC-cccccCCCCC
Confidence 7899999999987644211 134899999998776655799988766 44433 356
Q ss_pred cc-cccC
Q psy6130 289 CT-NYFG 294 (295)
Q Consensus 289 ~R-Dy~~ 294 (295)
+| |||+
T Consensus 213 ~RiD~I~ 219 (256)
T 4fva_A 213 MRFDRLY 219 (256)
T ss_dssp ECCEEEE
T ss_pred cCeEEEE
Confidence 89 9975
No 14
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.91 E-value=2.3e-24 Score=187.85 Aligned_cols=197 Identities=14% Similarity=0.101 Sum_probs=121.5
Q ss_pred CceEEEEEecCCcchhh----hhhHHHHHhhcCCcEEEEcccCCCCC-----------C----CChhhhhcCC--CCeEE
Q psy6130 71 PNFKIASWNVAGLRACV----KKEGLDYIKKEDADIFCLQETKCHET-----------Q----LPPEVKMKFP--EYKTY 129 (295)
Q Consensus 71 ~~lkI~TwNv~g~~~~~----~~~~~~~i~~~~pDIi~LQE~~~~~~-----------~----~~~~~~~~~~--gy~~~ 129 (295)
..|||+||||++..... ...++++|++++|||||||||..... . +...+.. .. +|..+
T Consensus 2 ~~l~v~t~Ni~~~~~~~~~~~~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~d~~~~~~~~~l~~-~~~~~y~~~ 80 (266)
T 3teb_A 2 NAMKILTVNVHAWLEENQMEKIDILARTIAEKQYDVIAMQEVNQLMNNKIIFDDIREENYAWVLLETLQK-YTDTDYYLH 80 (266)
T ss_dssp -CEEEEEEECCTTCSTTHHHHHHHHHHHHHHHTCSEEEEEEEEEETTSCEEETTEETTCHHHHHHHHHTT-TCCSCCEEE
T ss_pred CceEEEEEecccccCcchhHHHHHHHHHHHhcCCCEEEEEEccccccccccccccccccHHHHHHHHHHH-hCCCCeEEE
Confidence 46999999998764321 12478899999999999999964321 0 1222332 22 37554
Q ss_pred Eec---CCCCCcceEEEEEeccCceEEe-cCCCCC---C-CCcceEEEEe----CCEEEEEEecCCCCCCcccHHHHHHH
Q psy6130 130 WLS---SPKAGYAGVGLYTKVKPNKVTY-GLGTKN---E-HYGRNCNSNI----VNTFYIRKNVPNAGAGLKTLDKRLEW 197 (295)
Q Consensus 130 ~~~---~~~~g~~Gvailsk~~~~~~~~-~~~~~~---~-~~~r~i~~~~----~~~~l~~vy~p~~~~~~~~~~~r~~~ 197 (295)
+.. ....+..|++||||.++..... .+.... . ...+++.+.+ ..+.|+++|+++...... .|..+
T Consensus 81 ~~~~~~~~~~~~~g~ailsr~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~---~r~~q 157 (266)
T 3teb_A 81 WSNSHIGFGKYNEGVAVITRHKIKAEDEFYCTFAQSVRTISARRIVSITINYEGQDIEFYSCHMNLPNCETE---DMGKN 157 (266)
T ss_dssp EEEEEECSTTEEEEEEEEESSCCSEEEEEECSSCCCTTCTTCCEEEEEEEEETTEEEEEEEEECCCTTCTTC---CHHHH
T ss_pred EeccccCccccCCeEEEEECceecCceeEEeCCCCCCCCcccceEEEEEEEeCCeEEEEEEecCCCccCChH---HHHHH
Confidence 322 2233446999999998766443 222211 1 2233444443 379999999988643221 24444
Q ss_pred HHHHHHHHHhhcCCCCEEEEccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhCCceeeecccCCCCCCcccccCC
Q psy6130 198 DKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSY 277 (295)
Q Consensus 198 ~~~l~~~l~~l~~~~pvIl~GDFN~~~~~~D~~~~~~~~~~~~~~~~e~~~~~~ll~~gl~D~~r~~~p~~~~~yT~~s~ 277 (295)
+..|.+ .+....|+|||||||+.+... ...+..|++.||.|+|+.+++... .|||...
T Consensus 158 ~~~l~~---~~~~~~~~il~GDfN~~~~~~------------------~~~~~~l~~~~l~d~~~~~~~~~~-~~t~~~~ 215 (266)
T 3teb_A 158 IQTILN---RTQNSNLKILMGDFNTDAIGN------------------VAAYENILSQGLFDTYVMAEKKDD-GITVDKS 215 (266)
T ss_dssp HHHHHT---SSCSCCEEEEEEECCCCTTTC------------------HHHHHHHHTTTCEEHHHHCSEECC-CCCEECC
T ss_pred HHHHHH---HHhcCCcEEEEeECCCCCCCC------------------CcHHHhhccccccchHHhhccccC-CccccCc
Confidence 444433 333378999999999976211 146777888899999999998766 5999543
Q ss_pred CCCCCccCCCccc-cccC
Q psy6130 278 MSKTARSRNTGCT-NYFG 294 (295)
Q Consensus 278 ~~~~~~~~~~~~R-Dy~~ 294 (295)
.. .......++| |||+
T Consensus 216 ~~-~~~~~~~~~riD~i~ 232 (266)
T 3teb_A 216 IH-GWDNDKAKKRLDYIF 232 (266)
T ss_dssp -------CTTEECCEEEE
T ss_pred cC-CcCcCCcCCeeEEEE
Confidence 33 3323357889 9985
No 15
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.90 E-value=1.1e-24 Score=187.88 Aligned_cols=197 Identities=14% Similarity=0.117 Sum_probs=121.4
Q ss_pred CCCceEEEEEecCCcchhh----hhhHHHHHhhcCCcEEEEcccCCCCCCCChhhhhcCCCCeEEEecCCCCCcceEEEE
Q psy6130 69 EEPNFKIASWNVAGLRACV----KKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLY 144 (295)
Q Consensus 69 ~~~~lkI~TwNv~g~~~~~----~~~~~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~~~~gy~~~~~~~~~~g~~Gvail 144 (295)
...+||||||||+|+.... .+.++++|++++|||||||||.... ...+......|..+.. ...+ .|.+++
T Consensus 6 ~~~~l~v~swNi~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~---~~~l~~~~~~~~~~~~--~~~~-~~~~~l 79 (256)
T 4gz1_A 6 DSSTISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPPY---CAYLKKRAASYTIITG--NEEG-YFTAIL 79 (256)
T ss_dssp GGGEEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECHHH---HHHHHHHCTTEEEEES--CSSS-SEEEEE
T ss_pred CCCcEEEEEEEcCCCcCcCHHHHHHHHHHHHHHcCCCEEEEEcCCHHH---HHHHHhhccccceeec--cccC-CceEEE
Confidence 4568999999999875421 2258899999999999999995321 2223321333333322 3344 456666
Q ss_pred EeccCceEEec--CCCCCCCCc-ceEEEE--e--CCEEEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhhcCCCCEEEE
Q psy6130 145 TKVKPNKVTYG--LGTKNEHYG-RNCNSN--I--VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILI 217 (295)
Q Consensus 145 sk~~~~~~~~~--~~~~~~~~~-r~i~~~--~--~~~~l~~vy~p~~~~~~~~~~~r~~~~~~l~~~l~~l~~~~pvIl~ 217 (295)
++.+++..... ......... .++.+. . ..+.|+++|+++.... ...|..++..+.+.++....+.|+|||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~---~~~~~~q~~~~~~~l~~~~~~~pvIl~ 156 (256)
T 4gz1_A 80 LKKGRVKFKSQEIIPFPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREH---SAERIRQLKTVLGKMQEAPDSTTVIFA 156 (256)
T ss_dssp EETTTEEEEEEEEEECTTCSSCCEEEEEEEEETTEEEEEEECBCCCSGGG---HHHHHHHHHHHHHHHHHSCTTSEEEEE
T ss_pred EEeccccceecccccCCcccccceEEEEEEEeCCEEEEEEeecccccccc---hhhhhHHHHHHhhhhhhccCcceEEEe
Confidence 66655443321 111111122 223332 2 3699999999875432 245666667777777766667899999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhCCceeeecccCCCCCCcccccCCCCC-CCccCCCccc-cccC
Q psy6130 218 GDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSK-TARSRNTGCT-NYFG 294 (295)
Q Consensus 218 GDFN~~~~~~D~~~~~~~~~~~~~~~~e~~~~~~ll~~gl~D~~r~~~p~~~~~yT~~s~~~~-~~~~~~~~~R-Dy~~ 294 (295)
||||+.+.+ .....+...++.|+|+.+++.....|||+..... ..+..+.++| |||+
T Consensus 157 GDfN~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~ 215 (256)
T 4gz1_A 157 GDTNLRDQE--------------------VIKCGGLPDNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIF 215 (256)
T ss_dssp EECCCCHHH--------------------HHHHTCSCTTEEEHHHHTTCCGGGSCSEETTTCCTTCCSSCCEECCEEEE
T ss_pred CccCCCcch--------------------hhhhhhccchhhhHHHHhcCCCCCCcccccCCCCccccCCCCCccEEEEE
Confidence 999986432 1233344568999999987665546888665430 2244567899 9975
No 16
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.90 E-value=2.7e-24 Score=183.38 Aligned_cols=196 Identities=15% Similarity=0.168 Sum_probs=119.4
Q ss_pred CceEEEEEecCCcchhh----hhhHHHHHhhcCCcEEEEcccCCCCCCCChhhhhcCCCCeEEEecCCCCCcceEEEEEe
Q psy6130 71 PNFKIASWNVAGLRACV----KKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTK 146 (295)
Q Consensus 71 ~~lkI~TwNv~g~~~~~----~~~~~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~~~~gy~~~~~~~~~~g~~Gvailsk 146 (295)
.+||||||||+|+.... .+.++++|++++|||||||||.... ...+.. ..++..++.. ...+.+|++++++
T Consensus 2 ~~l~v~t~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~---~~~l~~-~~~~~~~~~~-~~~~~~~~~~~~~ 76 (250)
T 4f1h_A 2 SKLSIISWNVDGLDTLNLADRARGLCSYLALYTPDVVFLQELIPAY---VQYLKK-RAVSYLFFEG-SDDGYFTGIMLRK 76 (250)
T ss_dssp CCEEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECHHH---HHHHHH-HCTTEEEEES-CSSSSEEEEEEET
T ss_pred CeEEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEeCCHHH---HHHHHH-hccCceeecc-cccccCceeEEee
Confidence 57999999999875421 1258899999999999999996322 222332 3334333332 3334456666655
Q ss_pred ccCceEEe-cCCCCCCCCcc-eEEEE--e--CCEEEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhhcCCCCEEEEccC
Q psy6130 147 VKPNKVTY-GLGTKNEHYGR-NCNSN--I--VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDL 220 (295)
Q Consensus 147 ~~~~~~~~-~~~~~~~~~~r-~i~~~--~--~~~~l~~vy~p~~~~~~~~~~~r~~~~~~l~~~l~~l~~~~pvIl~GDF 220 (295)
.+..-... .+.......++ ++.+. . ..+.++++|+++.... ...|..++..+.++++......|+||||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~hl~~~~~~---~~~r~~q~~~~~~~l~~~~~~~pvIl~GDf 153 (250)
T 4f1h_A 77 SRVKFLESEIICFPTTQMMRNLLIAQVTFSGQKLYLMTSHLESCKNQ---SQERTKQLRVVLQKIKEAPEDAIVIFAGDT 153 (250)
T ss_dssp TTCEEEEEEEEECTTCSSCCEEEEEEEEETTEEEEEEECBCCCSGGG---HHHHHHHHHHHHHHHHHSCTTEEEEEEEEC
T ss_pred ccccceecccccccCccccceEEEEEEecCCcEEEEecccccccccc---HHHHHHHHHHHHHHHHhcCCCCCEEEEEec
Confidence 43211111 11111112222 33332 2 3689999999875432 245667777777777776567899999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhCCceeeecccCCCCCCcccccCCCCC-CCccCCCccc-cccC
Q psy6130 221 NVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSK-TARSRNTGCT-NYFG 294 (295)
Q Consensus 221 N~~~~~~D~~~~~~~~~~~~~~~~e~~~~~~ll~~gl~D~~r~~~p~~~~~yT~~s~~~~-~~~~~~~~~R-Dy~~ 294 (295)
|+.+.+. ....+...++.|+|+.+++.....+||+..... .......++| |||+
T Consensus 154 N~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~ 209 (250)
T 4f1h_A 154 NLRDAEV--------------------ANVGGLPAGVCDVWEQLGKQEHCRYTWDTKANSNKTVPYVSRCRFDRIF 209 (250)
T ss_dssp CCCHHHH--------------------HTTTSSCTTEEEHHHHTTCCGGGCCSEETTTCCSSCCSSCCEECCEEEE
T ss_pred CCCCcch--------------------hhhhhccccchHHHHHhcCCccCCcccccccCCCCCcCCCCCccEEEEE
Confidence 9865331 111233458999999998876656777654430 2234467899 9975
No 17
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.89 E-value=1.2e-22 Score=176.53 Aligned_cols=188 Identities=19% Similarity=0.207 Sum_probs=121.4
Q ss_pred eEEEEEecCCcchhh--------hhhHHHHHhhcCCcEEEEcccCCCCCCCChhhhhcCCCCeEEEec-CCCCCcceEEE
Q psy6130 73 FKIASWNVAGLRACV--------KKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS-SPKAGYAGVGL 143 (295)
Q Consensus 73 lkI~TwNv~g~~~~~--------~~~~~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~~~~gy~~~~~~-~~~~g~~Gvai 143 (295)
|||+||||++..... ...++++|+.++|||||||||.... ...+.. ..+|..+... ....+..|++|
T Consensus 1 lrv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~---~~~l~~-~l~y~~~~~~~~~~~~~~g~ai 76 (257)
T 3l1w_A 1 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQ---VRDLKA-YTTFTCLSAEREGDGQGEGLAI 76 (257)
T ss_dssp CEEEEEECCCCCGGGGGGSHHHHHHHHHHHHHHHCCSEEEEEEECHHH---HHHHHH-HSSSEEEEEESSSSSCSCEEEE
T ss_pred CEEEEEEeccCCCCccccChHHHHHHHHHHHHHcCCCEEEEeCCCHHH---HHHHHh-cCCCcEEEecccCCCCCceEEE
Confidence 699999999876431 1247899999999999999997432 222333 3488555443 22134469999
Q ss_pred EEeccCceEEe----cCCCCCC--------CCcceE-EEEe------CCEEEEEEecCCCCCCcccHHHHHHHHHHHHHH
Q psy6130 144 YTKVKPNKVTY----GLGTKNE--------HYGRNC-NSNI------VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEH 204 (295)
Q Consensus 144 lsk~~~~~~~~----~~~~~~~--------~~~r~i-~~~~------~~~~l~~vy~p~~~~~~~~~~~r~~~~~~l~~~ 204 (295)
|+|...+.+.. .+..... ...|.+ .+.+ ..+.|+++|+++... ..|..++..+.++
T Consensus 77 l~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~~-----~~r~~q~~~l~~~ 151 (257)
T 3l1w_A 77 LYNEQKVQAIDTGYFWLSETPQQPSIHPEAGCPRIALWGLFKETTQNTPFLVINVHLDHISA-----HARLAGMTVILEE 151 (257)
T ss_dssp EECTTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTCSSCEEEEEEECCSSCH-----HHHHHHHHHHHHH
T ss_pred EEEcceEEEEecCeEECcCCCCcccccccccccceeEEEEEEEcCCCCEEEEEEeCCCCCCH-----HHHHHHHHHHHHH
Confidence 99955443321 1221110 234433 2332 379999999987532 4677777788777
Q ss_pred HH-hhcCCCCEEEEccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhCCceeeecccCCCCCCcccccCCCCCCCc
Q psy6130 205 LV-KLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTAR 283 (295)
Q Consensus 205 l~-~l~~~~pvIl~GDFN~~~~~~D~~~~~~~~~~~~~~~~e~~~~~~ll~~gl~D~~r~~~p~~~~~yT~~s~~~~~~~ 283 (295)
++ .+..+ |+|||||||+.+.+ ..+. ++..||.|+|+..++... .+||.++.. . +
T Consensus 152 i~~~~~~~-pvil~GDfN~~~~~--------------------~~~~-~l~~~l~d~~~~~~~~~~-~~t~~~~~~-~-~ 206 (257)
T 3l1w_A 152 LHDKIAQY-PTLLMGDFNAESGE--------------------EVHQ-LVQKKFQDSKNLATHYGP-RGTFQNFTY-T-K 206 (257)
T ss_dssp THHHHHHS-CEEEEEECCCCTTS--------------------HHHH-HHTTTCEEGGGTSEEESC-SCCBCTTCT-T-C
T ss_pred HHHHcCCC-CEEEEeeCCCCCCc--------------------HHHH-HhhhhccchhhhhcccCC-CCcccCCcc-c-C
Confidence 77 34334 99999999987643 2333 455699999998876533 589866543 2 3
Q ss_pred cCCCccc-cccC
Q psy6130 284 SRNTGCT-NYFG 294 (295)
Q Consensus 284 ~~~~~~R-Dy~~ 294 (295)
+.+.++| |||+
T Consensus 207 ~~~~~~riD~i~ 218 (257)
T 3l1w_A 207 PWAELEEIDYIY 218 (257)
T ss_dssp CGGGCBCCEEEE
T ss_pred CCCCCCceeEEE
Confidence 3456689 9985
No 18
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.89 E-value=1.2e-22 Score=177.67 Aligned_cols=193 Identities=15% Similarity=0.236 Sum_probs=123.4
Q ss_pred CceEEEEEecCCcch--------hhhhhHHHHHhhcCCcEEEEcccCCCCCCCChhhhhcCCCCeEEEecC--CCCCcce
Q psy6130 71 PNFKIASWNVAGLRA--------CVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS--PKAGYAG 140 (295)
Q Consensus 71 ~~lkI~TwNv~g~~~--------~~~~~~~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~~~~gy~~~~~~~--~~~g~~G 140 (295)
.+|+|+||||++... .....++++|+..+|||||||||.... ...+...+.+|..+.... +.....|
T Consensus 2 ~~l~v~t~Ni~~~~~~~~~~~~~~r~~~i~~~i~~~~~DIv~LQEv~~~~---~~~l~~~l~~y~~~~~~~~~~~~~g~~ 78 (267)
T 3g6s_A 2 TDVRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKDHELDIVGMQEVLHNQ---FQDLRAGLPEYDGIGVGRDDGKTAGEY 78 (267)
T ss_dssp EEEEEEEEECCCCCGGGGGGSGGGTHHHHHHHHHHTTCSEEEEESBCHHH---HHHHHHHCTTEEEECCCTTTSSSSSCB
T ss_pred CcEEEEEEEeccCCCCccccCHHHHHHHHHHHHHHcCCCEEEEecCCHHH---HHHHHHhccCCcEEEecCCCCCcCCce
Confidence 369999999988753 122358899999999999999997422 122332146786554331 1122245
Q ss_pred EEEEEe---ccCceEEec-CCCCCC---------CCcce-EEEEe------CCEEEEEEecCCCCCCcccHHHHHHHHHH
Q psy6130 141 VGLYTK---VKPNKVTYG-LGTKNE---------HYGRN-CNSNI------VNTFYIRKNVPNAGAGLKTLDKRLEWDKL 200 (295)
Q Consensus 141 vailsk---~~~~~~~~~-~~~~~~---------~~~r~-i~~~~------~~~~l~~vy~p~~~~~~~~~~~r~~~~~~ 200 (295)
++||++ .++...... +..... ...|. +.+.+ ..+.|+++|+++.. ...|..+...
T Consensus 79 ~ail~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~-----~~~R~~q~~~ 153 (267)
T 3g6s_A 79 APLFYRKDKYEVLDSNTFWLAENPDSVGMMGWDAVCVRIATWAKFKDKATGKIFMAVNTHFDHVG-----EEARRQSALL 153 (267)
T ss_dssp CCEEEETTTEEEEEEEEEESSSCTTSTTCCCTTCSSCCEEEEEEEEETTTCCEEEEEEEECCSSC-----HHHHHHHHHH
T ss_pred eEEEEEccceEEEecccEecCCCCCccccccccccCcceEEEEEEEEcCCCCEEEEEEeCCCCCC-----HHHHHHHHHH
Confidence 999954 444332221 211100 23343 22332 36999999998743 2467777778
Q ss_pred HHHHHHhhcCCCCEEEEccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhCC--ceeeecccCCCCCCcccccCCC
Q psy6130 201 FHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKG--FTDSFRHLYPKRTGAYTYWSYM 278 (295)
Q Consensus 201 l~~~l~~l~~~~pvIl~GDFN~~~~~~D~~~~~~~~~~~~~~~~e~~~~~~ll~~g--l~D~~r~~~p~~~~~yT~~s~~ 278 (295)
|.+.++.+....|+|||||||+.+.+ ..+..|.+.| |.|+|+...+.....|||++..
T Consensus 154 l~~~l~~~~~~~pvIl~GDfN~~~~~--------------------~~~~~l~~~~~~l~d~~~~~~~~~~~~~T~~~~~ 213 (267)
T 3g6s_A 154 IIRKIKEIVGERPAVVTGDFNVTDAS--------------------DAYETITTNEFVMKDAYKTAARVTGVDYTFHDFA 213 (267)
T ss_dssp HHHHHHHHTTTSCEEEEEECSSCTTS--------------------HHHHHHHSSSSCCEEHHHHCSEEEECSCSBCTTT
T ss_pred HHHHHHHhcCCCCEEEEeECCCCCCC--------------------HHHHHhhcCCcchhhhHhhhccccCCCCCEeCCC
Confidence 88888877558899999999987654 3566666666 9999998864322258997765
Q ss_pred CCCCccCCCccc-cccC
Q psy6130 279 SKTARSRNTGCT-NYFG 294 (295)
Q Consensus 279 ~~~~~~~~~~~R-Dy~~ 294 (295)
. .. .+.++| |||+
T Consensus 214 ~-~~--~~~~~riD~I~ 227 (267)
T 3g6s_A 214 R-IP--AEDCEKIDFIF 227 (267)
T ss_dssp T-SC--GGGCCCCEEEE
T ss_pred C-CC--CCCCCcEeEEE
Confidence 4 21 345679 9986
No 19
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.87 E-value=1.2e-22 Score=180.56 Aligned_cols=197 Identities=15% Similarity=0.093 Sum_probs=117.4
Q ss_pred CCCCCceEEEEEecCCcchh-------hh--hhHHHHHhhcCCcEEEEcccCCCCC--CCChhhhhcCCCC-eEE-Eec-
Q psy6130 67 LGEEPNFKIASWNVAGLRAC-------VK--KEGLDYIKKEDADIFCLQETKCHET--QLPPEVKMKFPEY-KTY-WLS- 132 (295)
Q Consensus 67 ~~~~~~lkI~TwNv~g~~~~-------~~--~~~~~~i~~~~pDIi~LQE~~~~~~--~~~~~~~~~~~gy-~~~-~~~- 132 (295)
...+..|||+||||+++... .. ..+...|...+||||||||+..... .+...+ ..+| +.+ +..
T Consensus 5 ~~~~~~lrv~t~Ni~~~~~~~~~~~~~~~r~~~i~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l---~~~~~~~~~~~~~ 81 (301)
T 1zwx_A 5 DEYPGNFKITSHNVYLFSRNIYPNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNL---REMYPHQTPVIGR 81 (301)
T ss_dssp --CCCSCEEEEEEEEECCTTTSTTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHT---TTTCCEECCCTTS
T ss_pred ccCCCceEEEEEECccCCccccCCCCHHHHHHHHHHhhccCCCCEEEEeccccHHHHHHHHHHH---hhcCCccccccCC
Confidence 34566899999999886321 11 1234456778999999999974321 111111 1223 111 110
Q ss_pred -------------CCCCCcceEEEEEeccCceEEe-cCCCC---CCCCcc-eEEEEe----CCEEEEEEecCCCCCC---
Q psy6130 133 -------------SPKAGYAGVGLYTKVKPNKVTY-GLGTK---NEHYGR-NCNSNI----VNTFYIRKNVPNAGAG--- 187 (295)
Q Consensus 133 -------------~~~~g~~Gvailsk~~~~~~~~-~~~~~---~~~~~r-~i~~~~----~~~~l~~vy~p~~~~~--- 187 (295)
....+.+|++||||+|+..... .+... .....| ++.+.+ ..+.|+++|+++....
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~G~ailSr~pi~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~ 161 (301)
T 1zwx_A 82 SKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEKSQHIFQRGGGADRLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISK 161 (301)
T ss_dssp CSTTCSEEEC-----CCBCCCCEEEESSCEEEEEEEECSCCCGGGGGBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCH
T ss_pred ccccccccccccccccccCCCEEEEecCCcccceEEEecCCCCcccccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCc
Confidence 0112447999999998765432 23211 011223 444444 3699999999886432
Q ss_pred cccHHHHHHHHHHHHHHHHhh--cCCCCEEEEccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhC-Cce--eeec
Q psy6130 188 LKTLDKRLEWDKLFHEHLVKL--DAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDK-GFT--DSFR 262 (295)
Q Consensus 188 ~~~~~~r~~~~~~l~~~l~~l--~~~~pvIl~GDFN~~~~~~D~~~~~~~~~~~~~~~~e~~~~~~ll~~-gl~--D~~r 262 (295)
......|..++..|.++++.. ..+.|+|||||||+.+.+ ..+..|++. ++. |+|+
T Consensus 162 ~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~--------------------~~~~~l~~~~~~~~~d~~~ 221 (301)
T 1zwx_A 162 DTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGT--------------------DEYHDMLKLLNVSSPANFN 221 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTS--------------------HHHHHHHHHHTBCCCTTCC
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeeCCCCCCc--------------------HHHHHHHHHcCCCCCcccc
Confidence 123456888888888888874 346899999999998754 345566543 666 8886
Q ss_pred ccCCCCCCcccccCCCCCC-----CccCCCccc-cccC
Q psy6130 263 HLYPKRTGAYTYWSYMSKT-----ARSRNTGCT-NYFG 294 (295)
Q Consensus 263 ~~~p~~~~~yT~~s~~~~~-----~~~~~~~~R-Dy~~ 294 (295)
+ . .|||.. .. + .++...++| |||+
T Consensus 222 ----g-~-~~T~~~-~~-n~~~~~t~~~~~~~rID~I~ 251 (301)
T 1zwx_A 222 ----G-Q-MATWDP-TT-NSMLKESYPKAAPEYLDYIF 251 (301)
T ss_dssp ----T-T-SCSBCT-TT-CHHHHHHCTTSCCBCCEEEE
T ss_pred ----C-C-CceECC-cc-CccccccCCCCCcceEeEEE
Confidence 1 2 488853 22 2 133345789 9986
No 20
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=1.7e-21 Score=173.62 Aligned_cols=194 Identities=20% Similarity=0.262 Sum_probs=123.0
Q ss_pred CCCceEEEEEecCCcchhh--------h--hhHHHHHhhcCCcEEEEcccCCCCCCCChhhhhcCCCCeEEEecC--CCC
Q psy6130 69 EEPNFKIASWNVAGLRACV--------K--KEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS--PKA 136 (295)
Q Consensus 69 ~~~~lkI~TwNv~g~~~~~--------~--~~~~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~~~~gy~~~~~~~--~~~ 136 (295)
.+..|+||||||+...... . ..++++|+..+||||||||+.... ...+...+.+|..+.... +..
T Consensus 3 ~~~~lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~---~~~l~~~l~~y~~~~~~~~~g~~ 79 (298)
T 3mpr_A 3 QPTSLTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQYHDFDIFGTQECFLHQ---LKDMKEALPGYDYIGVGRDDGKD 79 (298)
T ss_dssp CCEEEEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHHHTTCSEEEEESBCHHH---HHHHHHHSTTEEEECCCTTTSSS
T ss_pred CCCcEEEEEEEeccCCCCCcccccCHHHHHHHHHHHHHHcCCCEEEEeCCCHHH---HHHHHHhCCCCcEEEEecCCCCC
Confidence 4567999999998654311 1 358899999999999999996321 222222255675443321 111
Q ss_pred CcceEEEE---EeccCceEEec-CCCCCC--------CCcceE-EEEe------CCEEEEEEecCCCCCCcccHHHHHHH
Q psy6130 137 GYAGVGLY---TKVKPNKVTYG-LGTKNE--------HYGRNC-NSNI------VNTFYIRKNVPNAGAGLKTLDKRLEW 197 (295)
Q Consensus 137 g~~Gvail---sk~~~~~~~~~-~~~~~~--------~~~r~i-~~~~------~~~~l~~vy~p~~~~~~~~~~~r~~~ 197 (295)
...+++|| +|.++...... +..... ...|.+ .+.+ ..+.|+++|+++.+ ...|..+
T Consensus 80 ~g~~~aily~~sr~~i~~~~~~~l~~~p~~~~~~~~~~~~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~-----~~~R~~q 154 (298)
T 3mpr_A 80 KGEHSAIFYRTDKFDIVEKGDFWLSETPDVPSKGWDAVLPRICSWGHFKCKDTGFEFLFFNLHMDHIG-----KKARVES 154 (298)
T ss_dssp SSCBCCEEEETTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTTCCEEEEEEEECCSSC-----HHHHHHH
T ss_pred CCceeEEEEecCceEEEeccEEEccCCCCccCcccccccCceeEEEEEEEcCCCCEEEEEEecCCCCC-----HHHHHHH
Confidence 22359999 66655543321 221110 123432 2332 36999999998533 2467777
Q ss_pred HHHHHHHHHhhc--CCCCEEEEccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhCC-ceeeecccCCCCCCcccc
Q psy6130 198 DKLFHEHLVKLD--AEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKG-FTDSFRHLYPKRTGAYTY 274 (295)
Q Consensus 198 ~~~l~~~l~~l~--~~~pvIl~GDFN~~~~~~D~~~~~~~~~~~~~~~~e~~~~~~ll~~g-l~D~~r~~~p~~~~~yT~ 274 (295)
...+.+.+..+. ...|+|||||||+.+.+ ..+..|.+.| |.|+|+.........+||
T Consensus 155 ~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~--------------------~~~~~l~~~g~l~D~~~~~~~~~~~~~T~ 214 (298)
T 3mpr_A 155 AFLVQEKMKELGRGKNLPAILTGDFNVDQTH--------------------QSYDAFVSKGVLCDSYEKCDYRYALNGTF 214 (298)
T ss_dssp HHHHHHHHHHTTTTSCCCEEEEEECSSCTTS--------------------HHHHHHHTTSSSEEHHHHCSEEECSSCSB
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC--------------------HHHHHHhcCCcchhhHhhhcccCCCCCCc
Confidence 788888888765 57899999999987753 4677777765 999998776432224788
Q ss_pred cCCCCCCCccCCCccc-cccC
Q psy6130 275 WSYMSKTARSRNTGCT-NYFG 294 (295)
Q Consensus 275 ~s~~~~~~~~~~~~~R-Dy~~ 294 (295)
.+... . ...++| |||+
T Consensus 215 ~~~~~-~---~~~~~rID~Il 231 (298)
T 3mpr_A 215 NNFDP-N---SFTESRIDHIF 231 (298)
T ss_dssp CTTCT-T---CCCSCCCEEEE
T ss_pred cCCCC-C---CCCCceEEEEE
Confidence 66543 2 224679 9986
No 21
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.83 E-value=8.9e-21 Score=170.65 Aligned_cols=198 Identities=18% Similarity=0.172 Sum_probs=117.3
Q ss_pred CCCCceEEEEEecCCcch-------hhhh--hHHHHHhhcCCcEEEEcccCCCC--CCCChhhhhcCCCC-eEE-EecCC
Q psy6130 68 GEEPNFKIASWNVAGLRA-------CVKK--EGLDYIKKEDADIFCLQETKCHE--TQLPPEVKMKFPEY-KTY-WLSSP 134 (295)
Q Consensus 68 ~~~~~lkI~TwNv~g~~~-------~~~~--~~~~~i~~~~pDIi~LQE~~~~~--~~~~~~~~~~~~gy-~~~-~~~~~ 134 (295)
..+..||||||||+++.. +..+ .+...+...+||||||||+.... ..+...+ ...| +.+ +...+
T Consensus 25 ~~~~~lrV~T~Ni~~~~~~~~~~~~~~~R~~~i~~~~~~~~pDIv~LQEv~~~~~~~~l~~~L---~~~~py~~~~~g~~ 101 (317)
T 3i41_A 25 KDDTDLKLVSHNVYMLSTVLYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNV---KKEYPYQTPVLGRS 101 (317)
T ss_dssp ---CCCCEEEEEEEECCTTTSTTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHHHHHHHHT---TTTCCEECCCTTSC
T ss_pred CCCCceEEEEEecccCccccCCCccHHHHHHHHHHHhhccCCCEEEEEeeccHHHHHHHHHHH---HHhCCcccccCCcc
Confidence 356789999999988641 2222 24455667899999999996432 1111122 2224 221 11111
Q ss_pred CCC--------------cceEEEEEeccCceEEec-CCCCC--C-CCcc-eEEEEe----CCEEEEEEecCCCCCC---c
Q psy6130 135 KAG--------------YAGVGLYTKVKPNKVTYG-LGTKN--E-HYGR-NCNSNI----VNTFYIRKNVPNAGAG---L 188 (295)
Q Consensus 135 ~~g--------------~~Gvailsk~~~~~~~~~-~~~~~--~-~~~r-~i~~~~----~~~~l~~vy~p~~~~~---~ 188 (295)
..+ ..|++||||+|+...... ++... . ...| ++.+.+ ..+.|+++|+++.... .
T Consensus 102 ~~~~~~~~~~y~~~~~~~~G~~ilSr~Pi~~~~~~~~~~~~~~d~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~ 181 (317)
T 3i41_A 102 QSGWDKTEGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAG 181 (317)
T ss_dssp STTCSEEEESCCSSCSBCCCCEEEESSCEEEEEEEECSCCCSSGGGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTT
T ss_pred ccCccCcccccccccccCCccEEEeCCCCccceeEECCCCCCcccccCcceEEEEEEECCEEEEEEEECCCCCCCCCccc
Confidence 111 159999999987654432 22210 0 2232 233332 3699999999875432 1
Q ss_pred ccHHHHHHHHHHHHHHHHhh--cCCCCEEEEccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhC-CceeeecccC
Q psy6130 189 KTLDKRLEWDKLFHEHLVKL--DAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDK-GFTDSFRHLY 265 (295)
Q Consensus 189 ~~~~~r~~~~~~l~~~l~~l--~~~~pvIl~GDFN~~~~~~D~~~~~~~~~~~~~~~~e~~~~~~ll~~-gl~D~~r~~~ 265 (295)
.....|..++..|.++++.. ..+.|+|||||||+.+.+ ..+..|+.. ++.|.-.
T Consensus 182 ~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~s--------------------~~~~~l~~~l~l~~~~~--- 238 (317)
T 3i41_A 182 HDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGT--------------------PEFKDMLKNLNVNDVLY--- 238 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTS--------------------HHHHHHHHHHTBCCCEE---
T ss_pred ccHHHHHHHHHHHHHHHHHhccCCCCeEEEEeECCCCCCC--------------------HHHHHHHHhcCCCCccc---
Confidence 23467888888999988874 357899999999998754 355556543 7777521
Q ss_pred CCCCCcccccCCCCCC----CccCCCccc-cccC
Q psy6130 266 PKRTGAYTYWSYMSKT----ARSRNTGCT-NYFG 294 (295)
Q Consensus 266 p~~~~~yT~~s~~~~~----~~~~~~~~R-Dy~~ 294 (295)
.+ . .|||+.... . .++.+..+| |||+
T Consensus 239 ~g-~-~~t~d~~~n-~~~~~~~p~~~~~rLDyIl 269 (317)
T 3i41_A 239 AG-H-NSTWDPQSN-SIAKYNYPNGKPEHLDYIF 269 (317)
T ss_dssp EE-C-SCSBCTTTC-HHHHHHCTTCCCBCCEEEE
T ss_pred CC-C-CcccCCCCC-ccccccCCCCCCcceEEEE
Confidence 11 1 488876433 2 345556789 9986
No 22
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.83 E-value=3.5e-20 Score=164.85 Aligned_cols=202 Identities=13% Similarity=0.086 Sum_probs=114.5
Q ss_pred CCCceEEEEEecCCcch-----h--h--hhhHHHHHhhcCCcEEEEcccCCCCC--CCChhhhhcCCCC-----------
Q psy6130 69 EEPNFKIASWNVAGLRA-----C--V--KKEGLDYIKKEDADIFCLQETKCHET--QLPPEVKMKFPEY----------- 126 (295)
Q Consensus 69 ~~~~lkI~TwNv~g~~~-----~--~--~~~~~~~i~~~~pDIi~LQE~~~~~~--~~~~~~~~~~~gy----------- 126 (295)
.+..|||+||||++++. + . ...+...+...+|||||||||..... .+...+ ..+|
T Consensus 6 ~~~~lrv~t~Ni~~~~~~~~~~~~~~~r~~~~~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l---~~~~~~~~~~~~~~~ 82 (306)
T 2ddr_A 6 QNDTLKVMTHNVYMLSTNLYPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNL---KKEYPNQTAVLGRSS 82 (306)
T ss_dssp -CCEEEEEEEEEEECCTTTCTTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHH---TTTCCEECCCTTSCC
T ss_pred CCCEEEEEEEECccCcccccCCCCHHHHHHHHHHHhhccCCCEEEEEeecCHHHHHHHHHHH---hhhCCceeeccCccc
Confidence 45679999999998752 1 1 11234456778999999999964321 111111 1122
Q ss_pred ----eEEEec--CCCCCcceEEEEEeccCceEEe-cCCCC--C-CCCcc-eEEEEe----CCEEEEEEecCCCCCC---c
Q psy6130 127 ----KTYWLS--SPKAGYAGVGLYTKVKPNKVTY-GLGTK--N-EHYGR-NCNSNI----VNTFYIRKNVPNAGAG---L 188 (295)
Q Consensus 127 ----~~~~~~--~~~~g~~Gvailsk~~~~~~~~-~~~~~--~-~~~~r-~i~~~~----~~~~l~~vy~p~~~~~---~ 188 (295)
...+.. ....+.+|++||||+|+..... .++.. . ....| ++.+.+ ..+.|+++|+++.... .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~G~ailSr~pi~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~ 162 (306)
T 2ddr_A 83 GSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFAKGCGPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKT 162 (306)
T ss_dssp STTSSEEEESCCTTCSSCCCCEEEESSCEEEEEEEECSCCC----CCCCEEEEEEEEETTEEEEEEEEECCCC-------
T ss_pred ccccccccccccccCccCCeEEEEECCCcccccEEEcCCCCCcchhcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccc
Confidence 111111 1123447999999998765432 22211 0 12333 344443 2699999999876421 1
Q ss_pred ccHHHHHHHHHHHHHHHHhh--cCCCCEEEEccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhC-CceeeecccC
Q psy6130 189 KTLDKRLEWDKLFHEHLVKL--DAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDK-GFTDSFRHLY 265 (295)
Q Consensus 189 ~~~~~r~~~~~~l~~~l~~l--~~~~pvIl~GDFN~~~~~~D~~~~~~~~~~~~~~~~e~~~~~~ll~~-gl~D~~r~~~ 265 (295)
.....|..++..|.++++.. ..+.|+|||||||+.+...|... . ..+..|+.. ++.|. .
T Consensus 163 ~~~~~R~~q~~~l~~~i~~~~~~~~~pvil~GDfN~~~~~~d~~~----------s----~~~~~l~~~~~~~~~--~-- 224 (306)
T 2ddr_A 163 SPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNN----------D----SEYASMFKTLNASVP--S-- 224 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTSSCT----------T----SHHHHHHHHHTBCCC--E--
T ss_pred cCHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCcccccccC----------C----HHHHHHHHhcCCCCc--c--
Confidence 23456888888888888775 34689999999999886554210 0 134555542 66652 1
Q ss_pred CCCCCcccccCCCCCC-----CccCCCccc-cccC
Q psy6130 266 PKRTGAYTYWSYMSKT-----ARSRNTGCT-NYFG 294 (295)
Q Consensus 266 p~~~~~yT~~s~~~~~-----~~~~~~~~R-Dy~~ 294 (295)
+... .|||.. .. + .++...++| |||+
T Consensus 225 ~~g~-~~T~~~-~~-n~~~~~t~~~~~~~rID~I~ 256 (306)
T 2ddr_A 225 YTGH-TATWDA-TT-NSIAKYNFPDSPAEYLDYII 256 (306)
T ss_dssp EEEC-SCSBCT-TT-CHHHHHHCTTSCCBCCEEEE
T ss_pred cCCC-CcccCC-CC-CccccccCCCCCcceeeEEE
Confidence 1112 589843 22 2 123345789 9976
No 23
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=99.64 E-value=1.3e-15 Score=140.58 Aligned_cols=152 Identities=17% Similarity=0.212 Sum_probs=93.1
Q ss_pred CCceEEEEEecCCcc---------------hhhh--hhHHHHHhhcCCcEEEEcccCCCC--CCCChhhhhcCCCCeEEE
Q psy6130 70 EPNFKIASWNVAGLR---------------ACVK--KEGLDYIKKEDADIFCLQETKCHE--TQLPPEVKMKFPEYKTYW 130 (295)
Q Consensus 70 ~~~lkI~TwNv~g~~---------------~~~~--~~~~~~i~~~~pDIi~LQE~~~~~--~~~~~~~~~~~~gy~~~~ 130 (295)
...|+||||||.... .|.. ..++++|..++||||||||+.... +.+...+. ..||..++
T Consensus 29 ~~~~~V~syNIl~d~~~~~~~~~~~p~~~~~W~~R~~~i~~~i~~~~pDIi~lQEv~~~q~~~~l~~~L~--~~gY~~v~ 106 (398)
T 3ngq_A 29 SASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFLPALK--ERGYDGFF 106 (398)
T ss_dssp CEEEEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCCSEEEEEEEEHHHHHHTHHHHHH--HTTEEEEE
T ss_pred CCCEEEEEEccCcCcCCccccccCCChhhcCHHHHHHHHHHHHHhcCCCEEEEecccHHHHHHHHHHHHH--hCCceEEE
Confidence 457999999997421 1111 247899999999999999997532 12222333 56896555
Q ss_pred ecCC---------CCCcceEEEEEeccCceEEec----CC------CCCC--CC------cce---EEEEe---------
Q psy6130 131 LSSP---------KAGYAGVGLYTKVKPNKVTYG----LG------TKNE--HY------GRN---CNSNI--------- 171 (295)
Q Consensus 131 ~~~~---------~~g~~Gvailsk~~~~~~~~~----~~------~~~~--~~------~r~---i~~~~--------- 171 (295)
...+ ..++.|+|||+|...|.+... +. .... .. ..+ +.++.
T Consensus 107 ~~k~r~~~~~~~~~~~~eG~AIfyr~~~f~ll~~~~i~ls~~~~~~s~~~~~~~~Ri~t~~nval~~~L~~~~~~~~~~~ 186 (398)
T 3ngq_A 107 SPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSDGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGM 186 (398)
T ss_dssp EESCTTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEHHHHHHHTCTTCHHHHHTTTTCCCEEEEEEEEECGGGC----
T ss_pred ecCCCccccccccccCcceeEEEEECCcceEEeeeEEecCCCcccccccchhhhcceeeccceeEEEEEEEccccccccc
Confidence 4211 134579999999887765432 10 0000 00 111 12222
Q ss_pred --------CCEEEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhhc--------------CCCCEEEEccCCCCCCC
Q psy6130 172 --------VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLD--------------AEKPVILIGDLNVSHKP 226 (295)
Q Consensus 172 --------~~~~l~~vy~p~~~~~~~~~~~r~~~~~~l~~~l~~l~--------------~~~pvIl~GDFN~~~~~ 226 (295)
..+.|+|+|+-..... -..|..+...|.+.++.+. ...|+|||||||+.+.+
T Consensus 187 ~~~~~~~~~~l~V~nTHL~~~p~~---~~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDFNs~P~s 260 (398)
T 3ngq_A 187 KPIHAADKQLLIVANAHMHWDPEY---SDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDS 260 (398)
T ss_dssp -------CCEEEEEEEECCCCTTC---HHHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSCCTTS
T ss_pred ccccCCCCcEEEEEEeCcCCCCCC---HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCceEEEeeCCCCCCC
Confidence 1389999999774332 2456666666666665541 24699999999999865
No 24
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.62 E-value=4.5e-15 Score=127.03 Aligned_cols=150 Identities=15% Similarity=0.187 Sum_probs=98.6
Q ss_pred CCCceEEEEEecCCcchh----hhhhHHHHHhhcC-CcEEEEcccCCCC------CC------C-ChhhhhcCCC-----
Q psy6130 69 EEPNFKIASWNVAGLRAC----VKKEGLDYIKKED-ADIFCLQETKCHE------TQ------L-PPEVKMKFPE----- 125 (295)
Q Consensus 69 ~~~~lkI~TwNv~g~~~~----~~~~~~~~i~~~~-pDIi~LQE~~~~~------~~------~-~~~~~~~~~g----- 125 (295)
.-..+||+|||++|.... ..-.+.++|...+ +|||+|||+..-. .. . ..++.+ ..|
T Consensus 12 ~~~~~kV~TwNiqgs~~~teskw~~~v~~lI~~~~~~DIvaLQEag~~p~sa~~t~R~~~~~g~~v~E~~w-~lGt~srp 90 (262)
T 2f1n_A 12 DLTDFRVATWNLQGASATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELIW-NLSTNSRP 90 (262)
T ss_dssp CGGGCCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEEE-ECCSSSSS
T ss_pred ccceeEEEEEEcCCCCCCCcccccccHHHHHccCCCCCEEEEeecCCcCcccccccccccCCCcCHHHHHH-HhCCCCCC
Confidence 445789999999986531 1224677888877 9999999997331 00 0 111222 223
Q ss_pred -C-eEEEec-CCCCCcceEEEEEeccCceEEecCCCCCCCCcceEEEEeCCEEEEEEecCCCCCCcccHHHHHHHHHHHH
Q psy6130 126 -Y-KTYWLS-SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFH 202 (295)
Q Consensus 126 -y-~~~~~~-~~~~g~~Gvailsk~~~~~~~~~~~~~~~~~~r~i~~~~~~~~l~~vy~p~~~~~~~~~~~r~~~~~~l~ 202 (295)
+ +.|+.. ....+..|+||+||++..++.. ++........++-+.+..+.++++|+-..+... +.++...+.
T Consensus 91 ~~~yiY~~~~D~~~~r~nlAIlSr~~adev~v-Lp~~~~~~Rp~lgiri~~~~ff~tHa~a~~g~d-----a~a~v~~I~ 164 (262)
T 2f1n_A 91 QQVYIYFSAVDALGGRVNLALVSNRRADEVFV-LSPVRQGGRPLLGIRIGNDAFFTAHAIAMRNND-----APALVEEVY 164 (262)
T ss_dssp CEEEEEEECSCSSSCSSCEEEEESSCCSEEEE-ECCSSTTCCCEEEEEETTEEEEEEECCSSSSCS-----HHHHHHHHH
T ss_pred ceEEEEEeeccCCCCceeeEEEEcccccceEE-CCCCCCCCCceEEEEECCEEEEEEEecCCCCcc-----HHHHHHHHH
Confidence 6 555554 3345667999999998765432 332211456677888999999999998764432 444566666
Q ss_pred HHHHhhcCC-----CCEEEEccCCCCCCC
Q psy6130 203 EHLVKLDAE-----KPVILIGDLNVSHKP 226 (295)
Q Consensus 203 ~~l~~l~~~-----~pvIl~GDFN~~~~~ 226 (295)
+++... +. .||||+||||..|.+
T Consensus 165 ~~~~~~-~~~~~~~~pwii~GDFNr~P~s 192 (262)
T 2f1n_A 165 NFFRDS-RDPVHQALNWMILGDFNREPAD 192 (262)
T ss_dssp HHHHTC-SSHHHHTCEEEEEEECSSCHHH
T ss_pred HHHhcC-cccccCCCcEEEEecCCCCCcc
Confidence 666653 23 599999999998754
No 25
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.58 E-value=1.9e-14 Score=124.29 Aligned_cols=148 Identities=15% Similarity=0.218 Sum_probs=90.0
Q ss_pred CceEEEEEecCCcchhh--hh--hHHHHHhh-cCCcEEEEcccCCCCCC-CC--h-----------hhhh----cCCCC-
Q psy6130 71 PNFKIASWNVAGLRACV--KK--EGLDYIKK-EDADIFCLQETKCHETQ-LP--P-----------EVKM----KFPEY- 126 (295)
Q Consensus 71 ~~lkI~TwNv~g~~~~~--~~--~~~~~i~~-~~pDIi~LQE~~~~~~~-~~--~-----------~~~~----~~~gy- 126 (295)
..+||+|||++|..... +. .++++|.. .+||||+|||+..-... .. . .... ..+++
T Consensus 3 ~~~kv~TwNi~g~~~~~~~k~~~~i~~~i~~~~~~DIlaLQEa~~~p~~~~~~~r~~~~~g~~v~e~~w~lg~~~r~~~~ 82 (261)
T 1sr4_B 3 SDFKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTWNLGTRSRPNMV 82 (261)
T ss_dssp GGSCEEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCEEEEEESSCSSSCCEE
T ss_pred cccEEEEEEcCCCCCCChhhhhhHHHHHHcCCCCCCEEEEecCCCCCCccccchhhhcccCCchhhhhhhcccccCCCce
Confidence 36899999999853311 11 47889998 78999999999653211 10 0 0000 01133
Q ss_pred eEEEec-CCCCCcceEEEEEeccCceEEecCCCCC--CCCcceEEEEeCCEEEEEEecCCCCCCcccHHHHHHHHHHHHH
Q psy6130 127 KTYWLS-SPKAGYAGVGLYTKVKPNKVTYGLGTKN--EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHE 203 (295)
Q Consensus 127 ~~~~~~-~~~~g~~Gvailsk~~~~~~~~~~~~~~--~~~~r~i~~~~~~~~l~~vy~p~~~~~~~~~~~r~~~~~~l~~ 203 (295)
+.|+.. ....+..|+||+||.++..+. .++... .....++.+.+..+.++++|+...+.. .+..+...+.+
T Consensus 83 yiy~~~~d~~~g~~g~AIlSR~~~~~v~-~l~~~~~~~~~R~~l~i~i~g~~f~s~Hl~~~~~~-----ea~~~v~~I~~ 156 (261)
T 1sr4_B 83 YIYYSRLDVGANRVNLAIVSRRQADEAF-IVHSDSSVLQSRPAVGIRIGTDVFFTVHALATGGS-----DAVSLIRNIFT 156 (261)
T ss_dssp EEEEECCCTTTSCSCEEEEESSCCSEEE-EECCCCCSSCCCCEEEEEETTEEEEEEECCTTTTT-----THHHHHHHHHH
T ss_pred EEEEEeecCCCCccceEEEEccchhceE-EcCCCCCCCcCcceEEEEECCeEEEEeCCCCCCCc-----hHHHHHHHHHH
Confidence 444443 223456799999999654432 222211 134446677888899999999886522 13333455666
Q ss_pred HHHhh--cCC---CCEEEEccCCCCC
Q psy6130 204 HLVKL--DAE---KPVILIGDLNVSH 224 (295)
Q Consensus 204 ~l~~l--~~~---~pvIl~GDFN~~~ 224 (295)
++... .+. .++||+||||..+
T Consensus 157 ~~~~~~~~~~~~~~~~ii~GDFN~~p 182 (261)
T 1sr4_B 157 TFNSSSSPPERRVYSWMVVGDFNRAP 182 (261)
T ss_dssp HHHC---CGGGGGCEEEEEEECSSCH
T ss_pred HHHhcccCCcccCCcEEEEeeCCCCh
Confidence 66543 023 7999999999874
No 26
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.48 E-value=1.8e-13 Score=119.08 Aligned_cols=145 Identities=12% Similarity=0.055 Sum_probs=79.6
Q ss_pred eEEEEEecCCcchhh--hhhHHHHHhh--cCCcEEEEcccCCCCCC-CC---hhhhhc-CCCCeEEEecC-CC-CCcceE
Q psy6130 73 FKIASWNVAGLRACV--KKEGLDYIKK--EDADIFCLQETKCHETQ-LP---PEVKMK-FPEYKTYWLSS-PK-AGYAGV 141 (295)
Q Consensus 73 lkI~TwNv~g~~~~~--~~~~~~~i~~--~~pDIi~LQE~~~~~~~-~~---~~~~~~-~~gy~~~~~~~-~~-~g~~Gv 141 (295)
|||+||||+.+.... ...+++.|.+ .+||||||||+...... +. ..+... ...|..+.... +. .+..++
T Consensus 1 lrv~s~NI~~~g~~~~~~~~~~~~i~~~~~~~DIv~LQEv~~~~~~~~~~l~~~L~~~~~~~y~~v~~~~~~~~~~~~~~ 80 (260)
T 2a40_B 1 LKIAAFNIRTFGETKMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSEPLGRNSYKERY 80 (260)
T ss_dssp CEEEEEEEEEESHHHHHSHHHHHHHHHHHTTCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECCCBCSSSCCBEE
T ss_pred CEEEEEehhhhCCCccchHHHHHHHHHHhccCCEEEEEEEEcCchhHHHHHHHHHHhccCCCcEEEEcccCCCCCCcEEE
Confidence 699999998653221 1124444444 38999999999753211 11 112110 13475544431 11 123468
Q ss_pred EEEEeccCceEEec--CCCC--C-----C-CCcceEEEE-----eCCEEEEEEecCCCCCCcccHHHHHHHHHHHHHHHH
Q psy6130 142 GLYTKVKPNKVTYG--LGTK--N-----E-HYGRNCNSN-----IVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLV 206 (295)
Q Consensus 142 ailsk~~~~~~~~~--~~~~--~-----~-~~~r~i~~~-----~~~~~l~~vy~p~~~~~~~~~~~r~~~~~~l~~~l~ 206 (295)
+++++...+.+... +... . + ....++... ...|.|+++|+++.... .+..++..+++
T Consensus 81 ~~ly~~~~v~~~~~~~~~~~~~~~~~~~~~R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~~~--------~q~~~l~~~~~ 152 (260)
T 2a40_B 81 LFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPSDAV--------AEINSLYDVYL 152 (260)
T ss_dssp EEEECTTTCEEEEEEECCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCCGGGHH--------HHHHHHHHHHH
T ss_pred EEEEcCceeEecCceeccCCCcCCCCCceeeCCEEEEEEeCCCCCceEEEEEecCCCCCcH--------HHHHHHHHHHH
Confidence 99999887654332 2211 0 0 122233333 23699999999864321 11334444443
Q ss_pred hh---cCCCCEEEEccCCCCCC
Q psy6130 207 KL---DAEKPVILIGDLNVSHK 225 (295)
Q Consensus 207 ~l---~~~~pvIl~GDFN~~~~ 225 (295)
.+ .+..|+|||||||..+.
T Consensus 153 ~~~~~~~~~~vil~GDfN~~~~ 174 (260)
T 2a40_B 153 DVQQKWHLNDVMLMGDFNADCS 174 (260)
T ss_dssp HHHHHHCCCCEEEEEECCCSTT
T ss_pred HHHHhCCCCCEEEEecCCCCCc
Confidence 32 34689999999999865
No 27
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=8.1e-15 Score=145.63 Aligned_cols=153 Identities=14% Similarity=0.131 Sum_probs=31.8
Q ss_pred CCceEEEEEecCCcc---------------hhhh--hhHHHHHhhcCCcEEEEcccCCCC-CCCChhhhhcCCCCeEEEe
Q psy6130 70 EPNFKIASWNVAGLR---------------ACVK--KEGLDYIKKEDADIFCLQETKCHE-TQLPPEVKMKFPEYKTYWL 131 (295)
Q Consensus 70 ~~~lkI~TwNv~g~~---------------~~~~--~~~~~~i~~~~pDIi~LQE~~~~~-~~~~~~~~~~~~gy~~~~~ 131 (295)
...++++|||+.... .|.. ..++++|..++|||||||||.... .++...... ..||..++.
T Consensus 392 ~~~~~~ls~Nil~~~~~~~~~~~~~p~~~~~w~~R~~~i~~~I~~~~pDIIcLQEV~~~~~~~~l~~~l~-~~gY~~~~~ 470 (727)
T 4b8c_D 392 KRTFTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVESKTFEEYWVPLLD-KHGYTGIFH 470 (727)
T ss_dssp ----------CCCGGGCCTTTCCSSCHHHHSHHHHHHHHHHHHHHSCCSSEEEC-CCHHHHHTTTCC--------CEEC-
T ss_pred ccceeeeeccccccccCccccccccchhhhhhhhhhhHHHHHHHHcCCCeEEEEecCHHHHHHHHHHHHH-hCCccEEEe
Confidence 446899999997510 1211 247889999999999999997531 122222222 457844442
Q ss_pred c-C--------CCCCcceEEEEE---eccCceEEe-cCCC----------CCCCCc------ceE-EEE------eCCEE
Q psy6130 132 S-S--------PKAGYAGVGLYT---KVKPNKVTY-GLGT----------KNEHYG------RNC-NSN------IVNTF 175 (295)
Q Consensus 132 ~-~--------~~~g~~Gvails---k~~~~~~~~-~~~~----------~~~~~~------r~i-~~~------~~~~~ 175 (295)
. . +.....|+|||+ |+++..... .+.. ...... +++ .+. ...+.
T Consensus 471 ~~~~~~~~~~~~~~~~~G~AI~y~~srf~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~l~~~~~g~~l~ 550 (727)
T 4b8c_D 471 AKARAKTMHSKDSKKVDGCCIFFKRDQFKLITKDAMDFSGAWMKHKKFQRTEDYLNRAMNKDNVALFLKLQHIPSGDTIW 550 (727)
T ss_dssp ---------------CCCCEEEC---------------------------------------------------------
T ss_pred ccCCcccccccCCCCcccEEEEEEcccceEeeeeEEeechhhhhchhhcccHHHHhhcccCCcEEEEEEEeecCCCceEE
Confidence 1 0 123457999994 444433211 1110 000001 121 121 23688
Q ss_pred EEEEecCCCCCCcccHHHHHHHHHHHHHHHHhh------------cCCCCEEEEccCCCCCCC
Q psy6130 176 YIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKL------------DAEKPVILIGDLNVSHKP 226 (295)
Q Consensus 176 l~~vy~p~~~~~~~~~~~r~~~~~~l~~~l~~l------------~~~~pvIl~GDFN~~~~~ 226 (295)
|+++|+.+..... ..|..+...+.+.++.+ ..+.|+|||||||+.+.+
T Consensus 551 V~ntHL~~~p~~~---~~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFNs~P~s 610 (727)
T 4b8c_D 551 AVTTHLHWDPKFN---DVKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNSYINS 610 (727)
T ss_dssp ---------------------------------------------------------------
T ss_pred EEEeccccCCCCC---chHHHHHHHHHHHHHHHHHHhcccccccccCCCceEEecccCCCCCC
Confidence 9999998743221 23444444444444433 135799999999999866
No 28
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=99.05 E-value=9.4e-10 Score=99.56 Aligned_cols=148 Identities=18% Similarity=0.156 Sum_probs=82.2
Q ss_pred CCceEEEEEecCCcchhhhhhHHHHHhh---cCCcE--EEEcccC-CCCCCC---------------Chhhhhc---CCC
Q psy6130 70 EPNFKIASWNVAGLRACVKKEGLDYIKK---EDADI--FCLQETK-CHETQL---------------PPEVKMK---FPE 125 (295)
Q Consensus 70 ~~~lkI~TwNv~g~~~~~~~~~~~~i~~---~~pDI--i~LQE~~-~~~~~~---------------~~~~~~~---~~g 125 (295)
...+.|+||||+|.... ..+.+||.. ..||| |||||+. .....+ ...+... ...
T Consensus 24 ~~~i~v~TwNv~g~~~~--~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~~~~~~~~w~~~i~~~L~~~~~~~~~ 101 (347)
T 1i9z_A 24 NVKIFVASYNLNGCSAT--TKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREWESCVKRLLNGKCTSGPG 101 (347)
T ss_dssp EEEEEEEEEECTTCCCC--SCCHHHHSCSSSCCCSEEEEEEECSSCCC-----CCCHHHHHHHHHHHHHHHHHTCCSSCC
T ss_pred CcEEEEEeEecCCCCCc--hhHHHHhccccCCCCCEEEEEeEEeecCchhhhcccCchhHHHHHHHHHHHHhhcccCCCc
Confidence 45689999999988752 348888874 68999 8999983 333221 1111100 134
Q ss_pred CeEEEecCCCCCcceEEEEEeccCceE----E-----ecCCCCCCCCcc-eEEEEe--CCEEEEEEecCCCCCCcccHHH
Q psy6130 126 YKTYWLSSPKAGYAGVGLYTKVKPNKV----T-----YGLGTKNEHYGR-NCNSNI--VNTFYIRKNVPNAGAGLKTLDK 193 (295)
Q Consensus 126 y~~~~~~~~~~g~~Gvailsk~~~~~~----~-----~~~~~~~~~~~r-~i~~~~--~~~~l~~vy~p~~~~~~~~~~~ 193 (295)
|..... ...+.-+++|++|.++... . .++.......|. .+.+.+ ..+.++|+|+.++... .+.
T Consensus 102 Y~~v~s--~~l~g~~L~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gnKGav~vr~~~~~~~l~fvn~HLaa~~~~---~~~ 176 (347)
T 1i9z_A 102 YVQLRS--GQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTN---YDE 176 (347)
T ss_dssp EEEEEE--EEETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEEECCCCSSC---HHH
T ss_pred eeEEEE--eeccceEEEEEEehHhhhhccceeeeeEeccCCCccCCCceEEEEEEECCeEEEEEEecCCCCCcc---HHH
Confidence 433332 2222357888899886531 1 112111001222 223333 3699999999886543 244
Q ss_pred HHHHHHHHHHHHH-----hhcCCCCEEEEccCCCCC
Q psy6130 194 RLEWDKLFHEHLV-----KLDAEKPVILIGDLNVSH 224 (295)
Q Consensus 194 r~~~~~~l~~~l~-----~l~~~~pvIl~GDFN~~~ 224 (295)
|...+..+.+.+. .+....++|++||||...
T Consensus 177 R~~d~~~I~~~l~f~~~~~i~~~d~v~~~GDlNyRi 212 (347)
T 1i9z_A 177 RDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRI 212 (347)
T ss_dssp HHHHHHHHHHHCCCGGGCCTTSSSEEEEEEECCCCB
T ss_pred HHHHHHHHHHhhccCcccccccCccEEEeccccccc
Confidence 6555555544332 112357899999999654
No 29
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.02 E-value=3.9e-11 Score=105.88 Aligned_cols=149 Identities=15% Similarity=0.083 Sum_probs=75.0
Q ss_pred CCceEEEEEecCCcchhhhhhHHHHHh---hcCCcE--EEEcccCCCCCC------CChhhhhcCC--CCeEEEecCCCC
Q psy6130 70 EPNFKIASWNVAGLRACVKKEGLDYIK---KEDADI--FCLQETKCHETQ------LPPEVKMKFP--EYKTYWLSSPKA 136 (295)
Q Consensus 70 ~~~lkI~TwNv~g~~~~~~~~~~~~i~---~~~pDI--i~LQE~~~~~~~------~~~~~~~~~~--gy~~~~~~~~~~ 136 (295)
...|+|+||||++.... ..+.+|+. ...||| |||||+...... ....+...+. +|..+... ..
T Consensus 6 ~~~i~V~T~Nv~~~~~~--~~l~~wl~~~~~~~pDI~viglQEv~~~~~~~~~~~~w~~~l~~~L~~~~Y~~v~~~--~~ 81 (282)
T 2imq_X 6 QLSVHTVSWNSGHERAP--TNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLTSKGYTKLKNT--IT 81 (282)
T ss_dssp EEEEEEEEEEEETCCCC--SCCHHHHTCTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHHHHHTTEEEEEEE--EC
T ss_pred CcEEEEEEEeCCCCcCc--hhHHHHhcccccCCCCEEEEEeeeeccccccchhhHHHHHHHHHhcCCCceEEEEec--cC
Confidence 45699999999876542 23556654 688996 599999754321 0111221122 35333321 12
Q ss_pred CcceE--EEEEeccCce----EE-ecCCCCCCCCcc-eEEEEe--CCEEEEEEecCCCCCCcccHHHHHHHHHHHHHHHH
Q psy6130 137 GYAGV--GLYTKVKPNK----VT-YGLGTKNEHYGR-NCNSNI--VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLV 206 (295)
Q Consensus 137 g~~Gv--ailsk~~~~~----~~-~~~~~~~~~~~r-~i~~~~--~~~~l~~vy~p~~~~~~~~~~~r~~~~~~l~~~l~ 206 (295)
+..|+ +|++|.+.+. .. .++.......|. .+.+.+ ..+.++|+|+.+...... .|......+.+.+.
T Consensus 82 ~~~G~~l~vf~k~~~~~~i~~~~~~~~~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~~~~---~R~~~~~~I~~~~~ 158 (282)
T 2imq_X 82 ETMGLTVYCLEKHLDQNTLKNETIIVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTST---NTKYAYDTRLDYSK 158 (282)
T ss_dssp SSEEEEEEEEGGGCCTTTCCCEEEEEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCCTT---SSSSSCCGGGCTTS
T ss_pred ceeEEEEEEEEccccCccceeeeeccccccccCCceEEEEEEECCEEEEEEEECCCCCCchHH---HHHHHHHHHHHhhh
Confidence 22344 4555765431 11 111110001121 222333 369999999998633211 12111222322232
Q ss_pred hhcCCCCEEEEccCCCCCC
Q psy6130 207 KLDAEKPVILIGDLNVSHK 225 (295)
Q Consensus 207 ~l~~~~pvIl~GDFN~~~~ 225 (295)
.+....++|++||||...+
T Consensus 159 ~~~~~~~vi~~GDfN~r~~ 177 (282)
T 2imq_X 159 KDDPSDFLFWIGDLNVRVE 177 (282)
T ss_dssp SSSCCSEEEEEEECSCCBC
T ss_pred ccCccceEEEecccccccC
Confidence 2334678999999997654
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=98.82 E-value=4.3e-09 Score=95.45 Aligned_cols=151 Identities=14% Similarity=0.154 Sum_probs=81.5
Q ss_pred CCCceEEEEEecCCcchhhhhhHHHHHh----hcCCcE--EEEcccCCCCCCCChhhhh-cCCCCeEEEecCCCCCcceE
Q psy6130 69 EEPNFKIASWNVAGLRACVKKEGLDYIK----KEDADI--FCLQETKCHETQLPPEVKM-KFPEYKTYWLSSPKAGYAGV 141 (295)
Q Consensus 69 ~~~~lkI~TwNv~g~~~~~~~~~~~~i~----~~~pDI--i~LQE~~~~~~~~~~~~~~-~~~gy~~~~~~~~~~g~~Gv 141 (295)
..-.+.|+||||+|..... ..+.+++. ...||| |+|||+......+...+.. ....|..... ..-+..++
T Consensus 24 ~~l~i~v~TwNv~g~~~~~-~~L~~~l~~~~~~~~pDI~viGlQEi~~~~~~W~~~l~~~L~~~Y~~v~s--~~l~g~~l 100 (357)
T 2xsw_A 24 RNVALFVATWNMQGQKELP-PSLDEFLLPAEADYAQDLYVIGVQEGCSDRREWETRLQETLGPHYVLLSS--AAHGVLYM 100 (357)
T ss_dssp CEEEEEEEEEECTTCSSCC-SCCHHHHSCTTCCSCCSEEEEEEESCCSCHHHHHHHHHHHHCTTEEEEEE--EEETTEEE
T ss_pred CCceEEEEEEecCCCCCCc-ccHHHHhccccccCCCCEEEEEeeeccchHHHHHHHHHHHhCCcccchhh--hhhhhEEE
Confidence 3456899999999864321 13556653 357996 8899996432111122222 0234533322 22233578
Q ss_pred EEEEeccCceEE---------ecCCCCCCCCcc-eEEEEe--CCEEEEEEecCCCCCCcccHHHHHHHHHHHHHHHHh--
Q psy6130 142 GLYTKVKPNKVT---------YGLGTKNEHYGR-NCNSNI--VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVK-- 207 (295)
Q Consensus 142 ailsk~~~~~~~---------~~~~~~~~~~~r-~i~~~~--~~~~l~~vy~p~~~~~~~~~~~r~~~~~~l~~~l~~-- 207 (295)
+||+|.++.... .++...-.-.|. .+.+.+ ..+.++|+|+.+.... ...|...+..+.+.+.-
T Consensus 101 ~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~~~~---~~~Rn~d~~~I~~~l~f~~ 177 (357)
T 2xsw_A 101 SLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGK---VAERLLDYTRTVQALVLPR 177 (357)
T ss_dssp EEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCSTTC---HHHHHHHHHHHHHHCCCCS
T ss_pred EEEEchHHhhcCceeEecccccccccccccccEEEEEEEECCeEEEEEEEccCCCCch---HHHHHHHHHHHHHHhcccc
Confidence 899998753211 111100000111 223333 3699999999886543 34565544544443321
Q ss_pred ---------------hcCCCCEEEEccCCCCCC
Q psy6130 208 ---------------LDAEKPVILIGDLNVSHK 225 (295)
Q Consensus 208 ---------------l~~~~pvIl~GDFN~~~~ 225 (295)
+.....+|++||||...+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~ 210 (357)
T 2xsw_A 178 NVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLS 210 (357)
T ss_dssp SSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBS
T ss_pred cccccccccccccccccccceEEEecccCcccc
Confidence 012478999999998654
No 31
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=98.61 E-value=9e-08 Score=84.86 Aligned_cols=148 Identities=15% Similarity=0.134 Sum_probs=78.0
Q ss_pred CceEEEEEecCCcchhhhhhHHHHHhh--cCCc--EEEEcccCCCCCCC-----------ChhhhhcC---CCCeEEEec
Q psy6130 71 PNFKIASWNVAGLRACVKKEGLDYIKK--EDAD--IFCLQETKCHETQL-----------PPEVKMKF---PEYKTYWLS 132 (295)
Q Consensus 71 ~~lkI~TwNv~g~~~~~~~~~~~~i~~--~~pD--Ii~LQE~~~~~~~~-----------~~~~~~~~---~gy~~~~~~ 132 (295)
-.+.|+||||+|.... ..+.+||.. ..|| ||+|||+......+ ...+...+ ..|....+
T Consensus 8 ~~i~v~TwNvng~~~~--~~l~~wL~~~~~~pDI~viGlQE~~l~~~~~~~~~~~~~~~W~~~i~~~L~~~~~Y~~v~s- 84 (313)
T 3mtc_A 8 FRFFAGTYNVNGQSPK--ECLRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFKAVSEGLHPDAKYAKVKL- 84 (313)
T ss_dssp EEEEEEEEECTTCCCC--SCTHHHHSSSCCCCSEEEEEEECSCCSHHHHTTCCCHHHHHHHHHHHHHSCTTSCEEEEEE-
T ss_pred cEEEEEEEEcCCccCc--hhHHHHhcccCCCCCeEEEEEEecccchhhhcccCcchHHHHHHHHHHhcCCCCCEEEEEE-
Confidence 3577899999998763 357888875 6899 78999996532110 00111112 23543332
Q ss_pred CCCCCcceEEEEEeccCce----E-----EecCCCCCCCCcc-eEEEEe--CCEEEEEEecCCCCCCcccHHHHHHHHHH
Q psy6130 133 SPKAGYAGVGLYTKVKPNK----V-----TYGLGTKNEHYGR-NCNSNI--VNTFYIRKNVPNAGAGLKTLDKRLEWDKL 200 (295)
Q Consensus 133 ~~~~g~~Gvailsk~~~~~----~-----~~~~~~~~~~~~r-~i~~~~--~~~~l~~vy~p~~~~~~~~~~~r~~~~~~ 200 (295)
..-..--+.|+.|..... + ..++...-.-.|. .+.+.+ ..+.++|+|+.++.. ..+.|..-+..
T Consensus 85 -~~lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~---~~~~Rn~d~~~ 160 (313)
T 3mtc_A 85 -IRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIE---EYERRNQDYKD 160 (313)
T ss_dssp -EEETTEEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGG---GHHHHHHHHHH
T ss_pred -echhhhhhhhhhhhhhhhhcceeEeeeecccccccccCCceEEEEEEECCcEEEEEeeccCCCch---HHHHHHHHHHH
Confidence 111112344567765321 1 1122111001222 333444 379999999987543 23455543444
Q ss_pred HHHHHHh-----------hcCCCCEEEEccCCCCCC
Q psy6130 201 FHEHLVK-----------LDAEKPVILIGDLNVSHK 225 (295)
Q Consensus 201 l~~~l~~-----------l~~~~pvIl~GDFN~~~~ 225 (295)
+.+.+.- +.....+|++||||-..+
T Consensus 161 I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~ 196 (313)
T 3mtc_A 161 ICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIE 196 (313)
T ss_dssp HHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCBC
T ss_pred HHHhcccCCCCCccCCccccCCceEEEecccccccc
Confidence 4332211 012345999999997664
No 32
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=98.24 E-value=2.4e-06 Score=75.88 Aligned_cols=148 Identities=15% Similarity=0.143 Sum_probs=77.0
Q ss_pred CCceEEEEEecCCcchhhhhhHHHHHhh-------------cCCcEE--EEcccCCCCCCCChh----hhh-cCCCCeEE
Q psy6130 70 EPNFKIASWNVAGLRACVKKEGLDYIKK-------------EDADIF--CLQETKCHETQLPPE----VKM-KFPEYKTY 129 (295)
Q Consensus 70 ~~~lkI~TwNv~g~~~~~~~~~~~~i~~-------------~~pDIi--~LQE~~~~~~~~~~~----~~~-~~~gy~~~ 129 (295)
.-.+-|.||||+|..... .+.+||.- ..|||+ +|||.......+... +.. ....|...
T Consensus 7 ~i~i~vgTwNv~g~~p~~--~L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~~~~~W~~~i~~~L~~~~~~~Y~~v 84 (316)
T 4a9c_A 7 MISVFIGTWNMGSVPPPK--NVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPI 84 (316)
T ss_dssp EEEEEEEEEECTTSCCCS--CCHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCSCHHHHHHHHHHHHHHHHSCCCEEE
T ss_pred eEEEEEEEeEcCCcCCCc--chhHhhcccccccCcccccccCCCcEEEEeccccccchhHHHHHHHHHhccccCCCEEEE
Confidence 345789999999875532 47777642 347887 889985322111111 111 02356444
Q ss_pred EecCCCCCcceEEEEEeccCce----E-----EecCCCCCCCCcc-eEEEEe--CCEEEEEEecCCCCCCcccHHHHHHH
Q psy6130 130 WLSSPKAGYAGVGLYTKVKPNK----V-----TYGLGTKNEHYGR-NCNSNI--VNTFYIRKNVPNAGAGLKTLDKRLEW 197 (295)
Q Consensus 130 ~~~~~~~g~~Gvailsk~~~~~----~-----~~~~~~~~~~~~r-~i~~~~--~~~~l~~vy~p~~~~~~~~~~~r~~~ 197 (295)
.. ..-+.-.++|++|..... + ..++...-.-.|. .+.+.+ ..+.++|.|+.++... ...|..-
T Consensus 85 ~s--~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FVn~HLaAg~~~---~~~Rn~d 159 (316)
T 4a9c_A 85 AM--QSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEK---TARRNQN 159 (316)
T ss_dssp EE--EEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEETTEEEEEEEEECCCSTTC---HHHHHHH
T ss_pred Ee--eeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEECCcEEEEEEeccccCchH---HHHHHHH
Confidence 33 222334677888876432 1 1222111001222 233444 3799999999885543 3455544
Q ss_pred HHHHHHHHHh----h---c---CCCCEEEEccCCCCC
Q psy6130 198 DKLFHEHLVK----L---D---AEKPVILIGDLNVSH 224 (295)
Q Consensus 198 ~~~l~~~l~~----l---~---~~~pvIl~GDFN~~~ 224 (295)
+..+.+.+.- + + ....+|++||||-..
T Consensus 160 ~~~I~~~l~f~~~~~~~~d~~~~~d~vfw~GDLNyRi 196 (316)
T 4a9c_A 160 YLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRL 196 (316)
T ss_dssp HHHHHHHCCC-------CCTTTTSSEEEEEEECCCCB
T ss_pred HHHHHHhCCCCCCCcCccccCCcCCeEEEcCCccCCc
Confidence 4444332210 0 0 123589999999765
No 33
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=33.90 E-value=32 Score=29.05 Aligned_cols=46 Identities=9% Similarity=0.184 Sum_probs=25.4
Q ss_pred CCCCCceEEEEEecCCc--c-hhhhhhHHHHHh---hcCCcEEEEcccCCCC
Q psy6130 67 LGEEPNFKIASWNVAGL--R-ACVKKEGLDYIK---KEDADIFCLQETKCHE 112 (295)
Q Consensus 67 ~~~~~~lkI~TwNv~g~--~-~~~~~~~~~~i~---~~~pDIi~LQE~~~~~ 112 (295)
......|||+..-++-. . ....+.+.+++. ..++|+|+|+|+....
T Consensus 15 ~~~~~~~kva~~Q~~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~l~g 66 (281)
T 3p8k_A 15 VPRGSHMKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNG 66 (281)
T ss_dssp CCTTSEEEEEEEECCCCTTCHHHHHHHHHHHHHHHCCTTCCEEECCSSTTTT
T ss_pred cccCCCcEEEEEeccCCcCCHHHHHHHHHHHHHHHHhCCCcEEEcCCCccCC
Confidence 33455566665544322 1 111123444443 4689999999997653
No 34
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=24.45 E-value=71 Score=26.39 Aligned_cols=17 Identities=24% Similarity=0.194 Sum_probs=13.9
Q ss_pred hhcCCcEEEEcccCCCC
Q psy6130 96 KKEDADIFCLQETKCHE 112 (295)
Q Consensus 96 ~~~~pDIi~LQE~~~~~ 112 (295)
...++|+|+|+|+....
T Consensus 31 ~~~gadlvvfPE~~~~g 47 (262)
T 3ivz_A 31 SKQGAQLVVLPELFDTG 47 (262)
T ss_dssp HHTTCSEEECCTTTTTC
T ss_pred HHCCCCEEEeCCCcccC
Confidence 46789999999997653
No 35
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=22.20 E-value=1e+02 Score=25.87 Aligned_cols=16 Identities=13% Similarity=0.108 Sum_probs=13.1
Q ss_pred hhcCCcEEEEcccCCC
Q psy6130 96 KKEDADIFCLQETKCH 111 (295)
Q Consensus 96 ~~~~pDIi~LQE~~~~ 111 (295)
...++|||+|+|+...
T Consensus 50 ~~~gadlvvfPE~~l~ 65 (283)
T 3hkx_A 50 SEQGAQLLLTPELFGF 65 (283)
T ss_dssp HHTTCSEEECCTTGGG
T ss_pred HHCCCCEEEcCCCccc
Confidence 4568999999998764
Done!