Your job contains 1 sequence.
>psy6130
MGPKKAAAKVVDKEEKSSKKRKSEVEDSDANTKKTKSGSVENKATGPMNEKLSLNKIDYS
CNKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVK
MKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKN
VPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAG
FTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNYFGP
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy6130
(295 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0004584 - symbol:Rrp1 "Recombination repair protei... 612 1.0e-59 1
ZFIN|ZDB-GENE-040426-2761 - symbol:apex1 "APEX nuclease (... 582 1.6e-56 1
UNIPROTKB|P23196 - symbol:APEX1 "DNA-(apurinic or apyrimi... 531 4.0e-51 1
UNIPROTKB|Q9Z2J2 - symbol:APE "Apurinic/apyrimidinic endo... 528 8.3e-51 1
MGI|MGI:88042 - symbol:Apex1 "apurinic/apyrimidinic endon... 525 1.7e-50 1
RGD|2126 - symbol:Apex1 "APEX nuclease (multifunctional D... 524 2.2e-50 1
UNIPROTKB|A2T7I6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 523 2.8e-50 1
UNIPROTKB|P27695 - symbol:APEX1 "DNA-(apurinic or apyrimi... 521 4.6e-50 1
UNIPROTKB|A1YFZ3 - symbol:APEX1 "DNA-(apurinic or apyrimi... 521 4.6e-50 1
UNIPROTKB|A2T6Y4 - symbol:APEX1 "DNA-(apurinic or apyrimi... 521 4.6e-50 1
UNIPROTKB|J9PA46 - symbol:APEX1 "Uncharacterized protein"... 520 5.8e-50 1
UNIPROTKB|A1YES6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 520 5.8e-50 1
DICTYBASE|DDB_G0277701 - symbol:apeA "DNA-(apurinic or ap... 512 4.1e-49 1
UNIPROTKB|F1S8H5 - symbol:APEX1 "Uncharacterized protein"... 507 1.4e-48 1
TIGR_CMR|BA_3868 - symbol:BA_3868 "exodeoxyribonuclease I... 475 3.4e-45 1
UNIPROTKB|G3V5Q1 - symbol:APEX1 "DNA-(apurinic or apyrimi... 247 4.1e-45 2
UNIPROTKB|G3V3M6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 464 5.0e-44 1
WB|WBGene00001372 - symbol:exo-3 species:6239 "Caenorhabd... 454 5.7e-43 1
TAIR|locus:2060540 - symbol:ARP "apurinic endonuclease-re... 427 4.2e-40 1
UNIPROTKB|H7C4A8 - symbol:APEX1 "DNA-(apurinic or apyrimi... 234 1.9e-33 2
UNIPROTKB|F1M911 - symbol:F1M911 "Uncharacterized protein... 316 2.4e-28 1
UNIPROTKB|F1M909 - symbol:F1M909 "Uncharacterized protein... 312 6.4e-28 1
UNIPROTKB|F1M910 - symbol:F1M910 "Uncharacterized protein... 312 6.4e-28 1
UNIPROTKB|G3V359 - symbol:APEX1 "DNA-(apurinic or apyrimi... 291 1.1e-25 1
TIGR_CMR|CJE_0305 - symbol:CJE_0305 "exodeoxyribonuclease... 282 9.7e-25 1
UNIPROTKB|G3V5M0 - symbol:APEX1 "DNA-(apurinic or apyrimi... 270 1.8e-23 1
UNIPROTKB|G3V3C7 - symbol:APEX1 "DNA-(apurinic or apyrimi... 251 1.9e-21 1
TIGR_CMR|CBU_0297 - symbol:CBU_0297 "exodeoxyribonuclease... 251 1.9e-21 1
UNIPROTKB|F1PFY2 - symbol:APEX1 "Uncharacterized protein"... 231 2.5e-19 1
TIGR_CMR|NSE_0415 - symbol:NSE_0415 "exodeoxyribonuclease... 185 1.4e-13 1
UNIPROTKB|G3V5D9 - symbol:APEX1 "DNA-(apurinic or apyrimi... 176 1.6e-13 1
UNIPROTKB|P09030 - symbol:xthA "exonuclease III" species:... 179 1.5e-12 1
TIGR_CMR|SO_3037 - symbol:SO_3037 "exodeoxyribonuclease I... 177 3.4e-12 1
UNIPROTKB|Q9KQY7 - symbol:VC1860 "Exodeoxyribonuclease II... 175 5.9e-12 1
TIGR_CMR|VC_1860 - symbol:VC_1860 "exodeoxyribonuclease I... 175 5.9e-12 1
TIGR_CMR|SPO_2509 - symbol:SPO_2509 "exodeoxyribonuclease... 167 7.7e-11 1
TIGR_CMR|ECH_0675 - symbol:ECH_0675 "exodeoxyribonuclease... 136 1.3e-10 2
RGD|1586200 - symbol:Apex2l1 "APEX nuclease (apurinic/apy... 110 6.5e-10 2
ZFIN|ZDB-GENE-040426-835 - symbol:apex2 "APEX nuclease (a... 109 2.3e-08 2
TAIR|locus:505006392 - symbol:AT3G48425 species:3702 "Ara... 147 6.6e-08 1
TIGR_CMR|SPO_3425 - symbol:SPO_3425 "exodeoxyribonuclease... 141 1.4e-07 1
UNIPROTKB|F1RUD3 - symbol:LOC100519003 "Uncharacterized p... 98 2.1e-07 2
UNIPROTKB|F1MSK4 - symbol:APEX2 "DNA-(apurinic or apyrimi... 95 3.7e-07 2
UNIPROTKB|Q5E9N9 - symbol:APEX2 "DNA-(apurinic or apyrimi... 95 3.7e-07 2
MGI|MGI:1924872 - symbol:Apex2 "apurinic/apyrimidinic end... 96 5.7e-07 2
UNIPROTKB|J9NYZ7 - symbol:APEX2 "Uncharacterized protein"... 93 1.2e-06 2
UNIPROTKB|E2RCW8 - symbol:APEX2 "Uncharacterized protein"... 92 1.6e-06 2
POMBASE|SPBC3D6.10 - symbol:apn2 "AP-endonuclease Apn2" s... 92 7.0e-06 2
TAIR|locus:2135164 - symbol:AT4G36050 species:3702 "Arabi... 94 7.7e-06 2
UNIPROTKB|Q9UBZ4 - symbol:APEX2 "DNA-(apurinic or apyrimi... 90 9.1e-06 2
TIGR_CMR|GSU_1539 - symbol:GSU_1539 "exodeoxyribonuclease... 121 3.7e-05 1
GENEDB_PFALCIPARUM|PFC0250c - symbol:PFC0250c "AP endonuc... 104 0.00013 2
UNIPROTKB|O97240 - symbol:PFC0250c "AP endonuclease (DNA-... 104 0.00013 2
GENEDB_PFALCIPARUM|PF14_0285 - symbol:PF14_0285 "exodeoxy... 114 0.00015 2
UNIPROTKB|Q8ILF8 - symbol:PF14_0285 "Exodeoxyribonuclease... 114 0.00015 2
TIGR_CMR|APH_0505 - symbol:APH_0505 "exodeoxyribonuclease... 115 0.00019 1
>FB|FBgn0004584 [details] [associations]
symbol:Rrp1 "Recombination repair protein 1" species:7227
"Drosophila melanogaster" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=NAS] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=NAS] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 EMBL:AE014134
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0006974
GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 GO:GO:0008408 ChiTaRS:RRP1 EMBL:M62472
EMBL:AF073994 EMBL:AY118605 PIR:S28366 RefSeq:NP_476841.1
UniGene:Dm.280 ProteinModelPortal:P27864 SMR:P27864 STRING:P27864
PaxDb:P27864 PRIDE:P27864 EnsemblMetazoa:FBtr0077678 GeneID:33500
KEGG:dme:Dmel_CG3178 CTD:8568 FlyBase:FBgn0004584 InParanoid:P27864
OrthoDB:EOG4NK9B8 GenomeRNAi:33500 NextBio:783912 Bgee:P27864
GermOnline:CG3178 Uniprot:P27864
Length = 679
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 119/221 (53%), Positives = 149/221 (67%)
Query: 69 EEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKT 128
+E N KI SWNVAGLRA +KK+GL I E+ DIFCLQETKC QLP EV + P Y
Sbjct: 423 KEFNLKICSWNVAGLRAWLKKDGLQLIDLEEPDIFCLQETKCANDQLPEEVT-RLPGYHP 481
Query: 129 YWLSSPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAG 187
YWL P GYAGV +Y+K+ P V YG+G + + GR + + I VPN+G
Sbjct: 482 YWLCMP-GGYAGVAIYSKIMPIHVEYGIGNEEFDDVGRMITAEYEKFYLINVYVPNSGRK 540
Query: 188 LKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERD 247
L L+ R+ W+KLF ++ KLDA KPV++ GD+NVSH PIDL NP NT++AGFT EERD
Sbjct: 541 LVNLEPRMRWEKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERD 600
Query: 248 SFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+ LL GF D+FRHLYP R GAYT+W+YM+ AR+RN G
Sbjct: 601 KMTELLGLGFVDTFRHLYPDRKGAYTFWTYMAN-ARARNVG 640
>ZFIN|ZDB-GENE-040426-2761 [details] [associations]
symbol:apex1 "APEX nuclease (multifunctional DNA
repair enzyme) 1" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IMP] [GO:0001947 "heart looping"
evidence=IMP] [GO:0060047 "heart contraction" evidence=IMP]
[GO:0010628 "positive regulation of gene expression" evidence=IMP]
[GO:0080111 "DNA demethylation" evidence=ISS] [GO:0016829 "lyase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 ZFIN:ZDB-GENE-040426-2761
GO:GO:0005783 GO:GO:0005739 GO:GO:0043066 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0016607 GO:GO:0006281
GO:GO:0080111 GO:GO:0003723 GO:GO:0060047 GO:GO:0090305
GO:GO:0001947 GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
EMBL:EF041101 EMBL:EF041102 EMBL:EF041103 EMBL:EF041104
EMBL:BX323558 EMBL:BC055545 EMBL:BC097053 EMBL:BC164240
IPI:IPI00498781 RefSeq:NP_998586.1 UniGene:Dr.20170 PDB:2O3C
PDBsum:2O3C ProteinModelPortal:A0MTA1 SMR:A0MTA1 STRING:A0MTA1
PRIDE:A0MTA1 Ensembl:ENSDART00000067374 GeneID:406730
KEGG:dre:406730 InParanoid:Q7SXL6 EvolutionaryTrace:A0MTA1
NextBio:20818249 ArrayExpress:A0MTA1 Bgee:A0MTA1 Uniprot:A0MTA1
Length = 310
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 122/234 (52%), Positives = 150/234 (64%)
Query: 65 NKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFP 124
+K G N KI SWNV GLRA VKK GLD+++KED DI CLQETKC E LP ++ P
Sbjct: 47 SKDGRAANMKITSWNVDGLRAWVKKNGLDWVRKEDPDILCLQETKCAEKALPADIT-GMP 105
Query: 125 EYK-TYWLSSP-KAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKN 180
EY YW S K GY+GV + K +P VTYG+G K EH GR + + F +
Sbjct: 106 EYPHKYWAGSEDKEGYSGVAMLCKTEPLNVTYGIG-KEEHDKEGRVITAEFPDFFLVTAY 164
Query: 181 VPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAG 240
VPNA GL LD R WD F +L LDA KP++L GDLNV+H+ IDL NP N ++AG
Sbjct: 165 VPNASRGLVRLDYRKTWDVDFRAYLCGLDARKPLVLCGDLNVAHQEIDLKNPKGNRKNAG 224
Query: 241 FTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCT-NYF 293
FT EER+ F+ LL+ GFTDSFR LYP + AYT+W+YM ARS+N G +YF
Sbjct: 225 FTPEEREGFTQLLEAGFTDSFRELYPDQAYAYTFWTYMMN-ARSKNVGWRLDYF 277
>UNIPROTKB|P23196 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9913 "Bos taurus" [GO:0008081 "phosphoric diester hydrolase
activity" evidence=ISS] [GO:0045454 "cell redox homeostasis"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0048471
"perinuclear region of cytoplasm" evidence=ISS] [GO:0046872 "metal
ion binding" evidence=ISS] [GO:0016491 "oxidoreductase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0003713
"transcription coactivator activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic
site) lyase activity" evidence=ISS] [GO:0043488 "regulation of mRNA
stability" evidence=ISS] [GO:0080111 "DNA demethylation"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISS] [GO:0008408
"3'-5' exonuclease activity" evidence=ISS] [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0045739 "positive regulation of DNA
repair" evidence=ISS] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005783 GO:GO:0005739
GO:GO:0005813 GO:GO:0048471 GO:GO:0005730 GO:GO:0006355
GO:GO:0046872 GO:GO:0003684 GO:GO:0016607 GO:GO:0006281
GO:GO:0016491 GO:GO:0006351 GO:GO:0080111 GO:GO:0003723
GO:GO:0003713 GO:GO:0006310 GO:GO:0045454 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708
KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:X56685
EMBL:BC122610 IPI:IPI00715890 PIR:S26830 RefSeq:NP_788782.2
UniGene:Bt.1302 PDB:1LYR PDB:1XZR PDB:1XZS PDB:1XZT PDBsum:1LYR
PDBsum:1XZR PDBsum:1XZS PDBsum:1XZT ProteinModelPortal:P23196
SMR:P23196 STRING:P23196 PRIDE:P23196 Ensembl:ENSBTAT00000003559
GeneID:281630 KEGG:bta:281630 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 InParanoid:P23196
OrthoDB:EOG44J2JD BRENDA:4.2.99.18 NextBio:20805567 GO:GO:0008408
GO:GO:0031490 GO:GO:0008081 GO:GO:0016890 GO:GO:0043488
Uniprot:P23196
Length = 318
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 118/265 (44%), Positives = 161/265 (60%)
Query: 33 KKTKSGSVENKATGPMNEKLSLNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGL 92
KK+K+G+ +N+ + E L + D K + G+ KI SWNV GLRA +KK+GL
Sbjct: 24 KKSKAGAKKNEKEA-VGEGAVLYE-DPPDQKTSPSGKSATLKICSWNVDGLRAWIKKKGL 81
Query: 93 DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS-SPKAGYAGVGLYTKVKPNK 151
D++K+E DI CLQETKC E +LP E++ YW + S K GY+GVGL ++ P K
Sbjct: 82 DWVKEEAPDILCLQETKCSENKLPVELQELSGLSHQYWSAPSDKEGYSGVGLLSRQCPLK 141
Query: 152 VTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDA 210
V+YG+G + ++ GR + + VPNAG GL L+ R WD+ F + L L +
Sbjct: 142 VSYGIGEEEHDQEGRVIVAEYDAFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLAS 201
Query: 211 EKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDK-GFTDSFRHLYPKRT 269
KP++L GDLNV+H+ IDL NP N ++AGFT +ER F LL TDSFRHLYP
Sbjct: 202 RKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLTDSFRHLYPNTA 261
Query: 270 GAYTYWSYMSKTARSRNTGCT-NYF 293
AYT+W+YM ARS+N G +YF
Sbjct: 262 YAYTFWTYMMN-ARSKNVGWRLDYF 285
>UNIPROTKB|Q9Z2J2 [details] [associations]
symbol:APE "Apurinic/apyrimidinic endonuclease"
species:10029 "Cricetulus griseus" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003713 "transcription coactivator activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0016491
"oxidoreductase activity" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=ISS] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 GO:GO:0048471
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0016491
GO:GO:0003713 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0016829 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOVERGEN:HBG050531 HSSP:P27695 EMBL:AF056934 EMBL:JH001089
RefSeq:NP_001231340.1 ProteinModelPortal:Q9Z2J2 SMR:Q9Z2J2
GeneID:100689281 Uniprot:Q9Z2J2
Length = 317
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 120/267 (44%), Positives = 162/267 (60%)
Query: 32 TKKTKSGSVENKATGPMNEKLSLNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKKEG 91
TKK+K + +N+ E L + D NK + G+ KI SWNV GLRA +KK+G
Sbjct: 22 TKKSKGAAKKNEKEAA-GEGPFLYE-DAPDNKTSPGGKLATLKICSWNVDGLRAWIKKKG 79
Query: 92 LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK-TYWLS-SPKAGYAGVGLYTKVKP 149
LD++K+E DI CLQETKC E +LP E++ P YW + S K GY+GVGL ++ P
Sbjct: 80 LDWVKEEAPDILCLQETKCSENKLPAELQ-DLPGLTHQYWSAPSDKEGYSGVGLLSRQCP 138
Query: 150 NKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKL 208
KV+YG+G + ++ GR + + + VPNAG GL L+ R WDK F + L L
Sbjct: 139 LKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDKAFCKFLKDL 198
Query: 209 DAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDK-GFTDSFRHLYPK 267
+ KP++L GDLNV+H+ IDL NP N ++AGFT +ER F LL TDSFRHLYP
Sbjct: 199 ASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLTDSFRHLYPN 258
Query: 268 RTGAYTYWSYMSKTARSRNTGCT-NYF 293
AYT+W+YM AR++N G +YF
Sbjct: 259 TPYAYTFWTYMMN-ARAKNVGWRLDYF 284
>MGI|MGI:88042 [details] [associations]
symbol:Apex1 "apurinic/apyrimidinic endonuclease 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003684 "damaged DNA binding" evidence=ISO]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic
or apyrimidinic site) lyase activity" evidence=ISO] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=ISO] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005667 "transcription factor complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007568 "aging" evidence=ISO] [GO:0008408 "3'-5'
exonuclease activity" evidence=ISO] [GO:0014912 "negative
regulation of smooth muscle cell migration" evidence=ISO]
[GO:0016491 "oxidoreductase activity" evidence=ISO] [GO:0016607
"nuclear speck" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016829 "lyase activity" evidence=IEA]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=ISO] [GO:0031490 "chromatin DNA binding"
evidence=ISO] [GO:0032403 "protein complex binding" evidence=ISO]
[GO:0043488 "regulation of mRNA stability" evidence=ISO]
[GO:0045454 "cell redox homeostasis" evidence=IDA] [GO:0045739
"positive regulation of DNA repair" evidence=ISO] [GO:0045750
"positive regulation of S phase of mitotic cell cycle"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
[GO:0051059 "NF-kappaB binding" evidence=ISO] [GO:0055114
"oxidation-reduction process" evidence=ISO] [GO:0070301 "cellular
response to hydrogen peroxide" evidence=ISO] [GO:0080111 "DNA
demethylation" evidence=ISO] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 MGI:MGI:88042 GO:GO:0005783
GO:GO:0005739 GO:GO:0005813 GO:GO:0048471 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0003713 GO:GO:0006310 GO:GO:0045454
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOGENOM:HOG000034586 HOVERGEN:HBG050531 GO:GO:0008408
GO:GO:0031490 GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF
EMBL:D90374 EMBL:U12273 EMBL:D38077 EMBL:BC052401 IPI:IPI00224152
PIR:A39500 RefSeq:NP_033817.1 UniGene:Mm.203
ProteinModelPortal:P28352 SMR:P28352 STRING:P28352
PhosphoSite:P28352 PaxDb:P28352 PRIDE:P28352
Ensembl:ENSMUST00000049411 GeneID:11792 KEGG:mmu:11792
InParanoid:P28352 NextBio:279621 Bgee:P28352 CleanEx:MM_APEX1
Genevestigator:P28352 GermOnline:ENSMUSG00000035960 Uniprot:P28352
Length = 317
Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 120/269 (44%), Positives = 162/269 (60%)
Query: 32 TKKTKSGS--VENKATGPMNEKLSLNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKK 89
TKK+K + E +A G E L + D K + G+ KI SWNV GLRA +KK
Sbjct: 22 TKKSKGAAKKTEKEAAG---EGPVLYE-DPPDQKTSPSGKSATLKICSWNVDGLRAWIKK 77
Query: 90 EGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK-TYWLS-SPKAGYAGVGLYTKV 147
+GLD++K+E DI CLQETKC E +LP E++ + P YW + S K GY+GVGL ++
Sbjct: 78 KGLDWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLTHQYWSAPSDKEGYSGVGLLSRQ 136
Query: 148 KPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLV 206
P KV+YG+G + ++ GR + + + VPNAG GL L+ R WD+ F + L
Sbjct: 137 CPLKVSYGIGEEEHDQEGRVIVAEFESFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLK 196
Query: 207 KLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDK-GFTDSFRHLY 265
L + KP++L GDLNV+H+ IDL NP N ++AGFT +ER F LL DSFRHLY
Sbjct: 197 DLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLY 256
Query: 266 PKRTGAYTYWSYMSKTARSRNTGCT-NYF 293
P AYT+W+YM ARS+N G +YF
Sbjct: 257 PNTAYAYTFWTYMMN-ARSKNVGWRLDYF 284
>RGD|2126 [details] [associations]
symbol:Apex1 "APEX nuclease (multifunctional DNA repair enzyme) 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=ISO;ISS] [GO:0003684 "damaged DNA binding" evidence=ISO;ISS]
[GO:0003713 "transcription coactivator activity" evidence=ISO;ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=ISO;ISS] [GO:0004519
"endonuclease activity" evidence=ISO] [GO:0004521 "endoribonuclease
activity" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;ISS;IDA] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0005730 "nucleolus" evidence=ISO;ISS] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0005739 "mitochondrion"
evidence=ISO;IDA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006281 "DNA repair"
evidence=ISO;ISS] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0007568 "aging" evidence=IDA] [GO:0008081 "phosphoric diester
hydrolase activity" evidence=IEA;ISO] [GO:0008408 "3'-5' exonuclease
activity" evidence=ISO;ISS] [GO:0010243 "response to organic
nitrogen" evidence=IEP] [GO:0014912 "negative regulation of smooth
muscle cell migration" evidence=IMP] [GO:0016491 "oxidoreductase
activity" evidence=ISO;ISS] [GO:0016607 "nuclear speck"
evidence=ISO;ISS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISO;ISS] [GO:0031490
"chromatin DNA binding" evidence=ISO;ISS] [GO:0032403 "protein
complex binding" evidence=IPI] [GO:0042493 "response to drug"
evidence=IEP] [GO:0043488 "regulation of mRNA stability"
evidence=ISO;ISS] [GO:0045454 "cell redox homeostasis"
evidence=IEA;ISO] [GO:0045739 "positive regulation of DNA repair"
evidence=ISO;ISS] [GO:0045750 "positive regulation of S phase of
mitotic cell cycle" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=ISO;ISS] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO;ISS] [GO:0051059 "NF-kappaB binding" evidence=IDA]
[GO:0055114 "oxidation-reduction process" evidence=ISO] [GO:0070301
"cellular response to hydrogen peroxide" evidence=IEP;IDA]
[GO:0071320 "cellular response to cAMP" evidence=IEP] [GO:0071375
"cellular response to peptide hormone stimulus" evidence=IEP]
[GO:0071417 "cellular response to organic nitrogen" evidence=IEP]
[GO:0080111 "DNA demethylation" evidence=ISO;ISS] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 RGD:2126 GO:GO:0005783
GO:GO:0005739 GO:GO:0048471 GO:GO:0005730 GO:GO:0006355 GO:GO:0071320
GO:GO:0070301 GO:GO:0042493 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0007568 GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0005667 GO:GO:0003713 GO:GO:0006310 GO:GO:0014912
GO:GO:0004521 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0045739 eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
GO:GO:0008408 GO:GO:0031490 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF
EMBL:L27076 EMBL:AB023065 EMBL:D44495 EMBL:AF309114 EMBL:BC078816
IPI:IPI00231964 PIR:S42397 RefSeq:NP_077062.1 UniGene:Rn.5949
ProteinModelPortal:P43138 SMR:P43138 STRING:P43138 PhosphoSite:P43138
PRIDE:P43138 Ensembl:ENSRNOT00000013176 GeneID:79116 KEGG:rno:79116
UCSC:RGD:2126 InParanoid:P43138 NextBio:614526 ArrayExpress:P43138
Genevestigator:P43138 GermOnline:ENSRNOG00000009663 GO:GO:0051059
GO:GO:0071375 GO:GO:0045750 Uniprot:P43138
Length = 317
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 119/269 (44%), Positives = 162/269 (60%)
Query: 32 TKKTKSGS--VENKATGPMNEKLSLNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKK 89
TKK+K + E +A G E L + D K + G+ KI SWNV GLRA +KK
Sbjct: 22 TKKSKGAAKKTEKEAAG---EGPVLYE-DPPDQKTSASGKSATLKICSWNVDGLRAWIKK 77
Query: 90 EGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK-TYWLS-SPKAGYAGVGLYTKV 147
+GLD++K+E DI CLQETKC E +LP E++ + P YW + S K GY+GVGL ++
Sbjct: 78 KGLDWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLTHQYWSAPSDKEGYSGVGLLSRQ 136
Query: 148 KPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLV 206
P KV+YG+G + ++ GR + + + VPNAG GL L+ R WD+ F + L
Sbjct: 137 CPLKVSYGIGEEEHDQEGRVIVAEFESFILVTAYVPNAGRGLVRLEYRQRWDEAFRKFLK 196
Query: 207 KLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDK-GFTDSFRHLY 265
L + KP++L GDLNV+H+ IDL NP N ++AGFT +ER F +L DSFRHLY
Sbjct: 197 DLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGEMLQAVPLADSFRHLY 256
Query: 266 PKRTGAYTYWSYMSKTARSRNTGCT-NYF 293
P AYT+W+YM ARS+N G +YF
Sbjct: 257 PNTAYAYTFWTYMMN-ARSKNVGWRLDYF 284
>UNIPROTKB|A2T7I6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9600 "Pongo pygmaeus" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 HOVERGEN:HBG050531
OrthoDB:EOG44J2JD GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:DQ977483 ProteinModelPortal:A2T7I6 SMR:A2T7I6
STRING:A2T7I6 InParanoid:A2T7I6 Uniprot:A2T7I6
Length = 318
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 117/270 (43%), Positives = 161/270 (59%)
Query: 34 KTKSGSVENKATGPMNEKLSLNK-----IDYSCNKKNKLGEEPNFKIASWNVAGLRACVK 88
KT+ + ++K T N+K + + D K + G+ KI SWNV GLRA +K
Sbjct: 18 KTEPEAKKSKTTAKKNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIK 77
Query: 89 KEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK-TYWLS-SPKAGYAGVGLYTK 146
K+GLD++K+E DI CLQETKC E +LP E++ + P YW + S K GY+GVGL ++
Sbjct: 78 KKGLDWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLSHQYWSAPSDKEGYSGVGLLSR 136
Query: 147 VKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHL 205
P KV+YG+G + ++ GR + + + VPNAG GL L+ R WD+ F L
Sbjct: 137 QCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRRFL 196
Query: 206 VKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDK-GFTDSFRHL 264
L + KP++L GDLNV+H+ IDL NP N ++AGFT +ER F LL DSFRHL
Sbjct: 197 KGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHL 256
Query: 265 YPKRTGAYTYWSYMSKTARSRNTGCT-NYF 293
YP AYT+W+YM ARS+N G +YF
Sbjct: 257 YPNTPYAYTFWTYMMN-ARSKNVGWRLDYF 285
>UNIPROTKB|P27695 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0007568 "aging" evidence=IEA] [GO:0014912 "negative regulation
of smooth muscle cell migration" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0042493 "response to drug"
evidence=IEA] [GO:0045454 "cell redox homeostasis" evidence=IEA]
[GO:0045750 "positive regulation of S phase of mitotic cell cycle"
evidence=IEA] [GO:0051059 "NF-kappaB binding" evidence=IEA]
[GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA]
[GO:0071320 "cellular response to cAMP" evidence=IEA] [GO:0071375
"cellular response to peptide hormone stimulus" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA;TAS] [GO:0003713 "transcription coactivator activity"
evidence=IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA;TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0004528
"phosphodiesterase I activity" evidence=TAS] [GO:0005840 "ribosome"
evidence=TAS] [GO:0005783 "endoplasmic reticulum" evidence=TAS]
[GO:0004523 "ribonuclease H activity" evidence=TAS] [GO:0003677
"DNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0016491 "oxidoreductase activity" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0043488 "regulation of mRNA
stability" evidence=IMP] [GO:0045739 "positive regulation of DNA
repair" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA;TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0031490 "chromatin DNA binding" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IDA;TAS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=IDA] [GO:0080111 "DNA
demethylation" evidence=IDA] [GO:0003714 "transcription corepressor
activity" evidence=TAS] [GO:0004520 "endodeoxyribonuclease
activity" evidence=TAS] [GO:0004844 "uracil DNA N-glycosylase
activity" evidence=TAS] [GO:0004519 "endonuclease activity"
evidence=IDA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IDA] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0055114 "oxidation-reduction process" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] Reactome:REACT_216 InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 EMBL:AF488551
EMBL:U79268 Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0003714 GO:GO:0005730 GO:GO:0006355
GO:GO:0046872 GO:GO:0006284 GO:GO:0003684 GO:GO:0016607
GO:GO:0016491 GO:GO:0006351 GO:GO:0080111 GO:GO:0003723
GO:GO:0005840 GO:GO:0003713 GO:GO:0006310 GO:GO:0045454
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
BRENDA:4.2.99.18 GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:X59764 EMBL:M80261 EMBL:D90373 EMBL:S43127
EMBL:M81955 EMBL:M92444 EMBL:X66133 EMBL:D13370 EMBL:BT007236
EMBL:AL355075 EMBL:BC002338 EMBL:BC004979 EMBL:BC008145
EMBL:BC019291 EMBL:M99703 IPI:IPI00215911 PIR:S23550
RefSeq:NP_001231178.1 RefSeq:NP_001632.2 RefSeq:NP_542379.1
RefSeq:NP_542380.1 UniGene:Hs.73722 PDB:1BIX PDB:1CQG PDB:1CQH
PDB:1DE8 PDB:1DE9 PDB:1DEW PDB:1E9N PDB:1HD7 PDB:2ISI PDB:2O3H
PDB:3U8U PDBsum:1BIX PDBsum:1CQG PDBsum:1CQH PDBsum:1DE8
PDBsum:1DE9 PDBsum:1DEW PDBsum:1E9N PDBsum:1HD7 PDBsum:2ISI
PDBsum:2O3H PDBsum:3U8U DisProt:DP00007 ProteinModelPortal:P27695
SMR:P27695 DIP:DIP-6130N IntAct:P27695 MINT:MINT-119189
STRING:P27695 PhosphoSite:P27695 DMDM:113984 PaxDb:P27695
PeptideAtlas:P27695 PRIDE:P27695 DNASU:328 Ensembl:ENST00000216714
Ensembl:ENST00000398030 Ensembl:ENST00000555414
Ensembl:ENST00000557344 GeneID:328 KEGG:hsa:328 UCSC:uc001vxg.3
GeneCards:GC14P020924 HGNC:HGNC:587 HPA:CAB004294 HPA:CAB047307
HPA:HPA002564 MIM:107748 neXtProt:NX_P27695 PharmGKB:PA201059
InParanoid:P27695 OMA:TAYAYTF PhylomeDB:P27695 BindingDB:P27695
ChEMBL:CHEMBL5619 ChiTaRS:APEX1 DrugBank:DB04967
EvolutionaryTrace:P27695 GenomeRNAi:328 NextBio:1347
PMAP-CutDB:P27695 ArrayExpress:P27695 Bgee:P27695 CleanEx:HS_APEX1
CleanEx:HS_HAP1 Genevestigator:P27695 GermOnline:ENSG00000100823
GO:GO:0004528 GO:GO:0004523 GO:GO:0004844 Uniprot:P27695
Length = 318
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 117/266 (43%), Positives = 161/266 (60%)
Query: 33 KKTKSGSVENKATGPMNEKLSLNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGL 92
KK+K+ + +N E +L + D K + G+ KI SWNV GLRA +KK+GL
Sbjct: 24 KKSKTAAKKNDKEAA-GEGPALYE-DPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGL 81
Query: 93 DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK-TYWLS-SPKAGYAGVGLYTKVKPN 150
D++K+E DI CLQETKC E +LP E++ + P YW + S K GY+GVGL ++ P
Sbjct: 82 DWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPL 140
Query: 151 KVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLD 209
KV+YG+G + ++ GR + + + VPNAG GL L+ R WD+ F + L L
Sbjct: 141 KVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLA 200
Query: 210 AEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDK-GFTDSFRHLYPKR 268
+ KP++L GDLNV+H+ IDL NP N ++AGFT +ER F LL DSFRHLYP
Sbjct: 201 SRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNT 260
Query: 269 TGAYTYWSYMSKTARSRNTGCT-NYF 293
AYT+W+YM ARS+N G +YF
Sbjct: 261 PYAYTFWTYMMN-ARSKNVGWRLDYF 285
>UNIPROTKB|A1YFZ3 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9597 "Pan paniscus" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 HOVERGEN:HBG050531 GO:GO:0008408
GO:GO:0031490 GO:GO:0016890 GO:GO:0043488 EMBL:DQ977185
RefSeq:XP_003811777.1 RefSeq:XP_003811778.1 RefSeq:XP_003811779.1
ProteinModelPortal:A1YFZ3 SMR:A1YFZ3 GeneID:100987860
KEGG:pps:100987860 Uniprot:A1YFZ3
Length = 318
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 117/266 (43%), Positives = 161/266 (60%)
Query: 33 KKTKSGSVENKATGPMNEKLSLNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGL 92
KK+K+ + +N E +L + D K + G+ KI SWNV GLRA +KK+GL
Sbjct: 24 KKSKTAAKKNDKEAA-GEGPALYE-DPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGL 81
Query: 93 DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK-TYWLS-SPKAGYAGVGLYTKVKPN 150
D++K+E DI CLQETKC E +LP E++ + P YW + S K GY+GVGL ++ P
Sbjct: 82 DWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPL 140
Query: 151 KVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLD 209
KV+YG+G + ++ GR + + + VPNAG GL L+ R WD+ F + L L
Sbjct: 141 KVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLA 200
Query: 210 AEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDK-GFTDSFRHLYPKR 268
+ KP++L GDLNV+H+ IDL NP N ++AGFT +ER F LL DSFRHLYP
Sbjct: 201 SRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNT 260
Query: 269 TGAYTYWSYMSKTARSRNTGCT-NYF 293
AYT+W+YM ARS+N G +YF
Sbjct: 261 PYAYTFWTYMMN-ARSKNVGWRLDYF 285
>UNIPROTKB|A2T6Y4 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9598 "Pan troglodytes" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003684 GO:GO:0016607 GO:GO:0006281 GO:GO:0016491
GO:GO:0006351 GO:GO:0080111 GO:GO:0003723 GO:GO:0003713
GO:GO:0006310 GO:GO:0045454 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708 KO:K10771
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:328
GeneTree:ENSGT00530000063540 HOGENOM:HOG000034586
HOVERGEN:HBG050531 OrthoDB:EOG44J2JD GO:GO:0008408 GO:GO:0031490
GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF EMBL:DQ977332
RefSeq:NP_001074954.1 UniGene:Ptr.3373 ProteinModelPortal:A2T6Y4
SMR:A2T6Y4 STRING:A2T6Y4 Ensembl:ENSPTRT00000011181 GeneID:465200
KEGG:ptr:465200 InParanoid:A2T6Y4 NextBio:20843678 Uniprot:A2T6Y4
Length = 318
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 117/266 (43%), Positives = 161/266 (60%)
Query: 33 KKTKSGSVENKATGPMNEKLSLNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGL 92
KK+K+ + +N E +L + D K + G+ KI SWNV GLRA +KK+GL
Sbjct: 24 KKSKTAAKKNDKEAA-GEGPALYE-DPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGL 81
Query: 93 DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK-TYWLS-SPKAGYAGVGLYTKVKPN 150
D++K+E DI CLQETKC E +LP E++ + P YW + S K GY+GVGL ++ P
Sbjct: 82 DWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPL 140
Query: 151 KVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLD 209
KV+YG+G + ++ GR + + + VPNAG GL L+ R WD+ F + L L
Sbjct: 141 KVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLA 200
Query: 210 AEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDK-GFTDSFRHLYPKR 268
+ KP++L GDLNV+H+ IDL NP N ++AGFT +ER F LL DSFRHLYP
Sbjct: 201 SRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNT 260
Query: 269 TGAYTYWSYMSKTARSRNTGCT-NYF 293
AYT+W+YM ARS+N G +YF
Sbjct: 261 PYAYTFWTYMMN-ARSKNVGWRLDYF 285
>UNIPROTKB|J9PA46 [details] [associations]
symbol:APEX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:328
GeneTree:ENSGT00530000063540 OMA:TAYAYTF EMBL:AAEX03009834
RefSeq:NP_001138591.1 ProteinModelPortal:J9PA46
Ensembl:ENSCAFT00000048382 GeneID:482558 KEGG:cfa:482558
Uniprot:J9PA46
Length = 318
Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
Identities = 119/269 (44%), Positives = 159/269 (59%)
Query: 30 ANTKKTKSGSVENKATGPMNEKLSLNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKK 89
A KT + E +A G E +L + D K G+ KI SWNV GLRA +KK
Sbjct: 23 AKKSKTAAKKSEKEAAG---EGPALYE-DPPDQKTAPSGKSATLKICSWNVDGLRAWIKK 78
Query: 90 EGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK-TYWLS-SPKAGYAGVGLYTKV 147
+GLD++K+E DI CLQETKC E +LP E++ + P YW + S K GY+GVGL ++
Sbjct: 79 KGLDWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLPHQYWSAPSDKEGYSGVGLLSRQ 137
Query: 148 KPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLV 206
P KV+YG+G + ++ GR + + VPNAG GL L+ R WD+ F + L
Sbjct: 138 CPLKVSYGIGEEEHDQEGRVIVAEFDTFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLK 197
Query: 207 KLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDK-GFTDSFRHLY 265
L + KP++L GDLNV+H+ IDL NP N ++AGFT +ER F LL DSFRHLY
Sbjct: 198 GLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLY 257
Query: 266 PKRTGAYTYWSYMSKTARSRNTGCT-NYF 293
P AYT+W+YM ARS+N G +YF
Sbjct: 258 PNTAYAYTFWTYMMN-ARSKNVGWRLDYF 285
>UNIPROTKB|A1YES6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9595 "Gorilla gorilla gorilla" [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic
site) lyase activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
HOVERGEN:HBG050531 GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:DQ976454 ProteinModelPortal:A1YES6
Uniprot:A1YES6
Length = 318
Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
Identities = 119/268 (44%), Positives = 163/268 (60%)
Query: 33 KKTKSGSVENKATGPMNEKLSLNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGL 92
KK+K+ + +N E +L + D K + G+ KI SWNV GLRA +KK+GL
Sbjct: 24 KKSKTAAKKNDKEAA-GEGPALYE-DPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGL 81
Query: 93 DYIKKEDADIFCLQETKCHETQLPPEVKMKFP--EYKTYWLSSP--KAGYAGVGLYTKVK 148
D++K+E DI CLQETKC E +LP E++ + P Y+ YW S+P K GY+GVGL ++
Sbjct: 82 DWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLSYQ-YW-SAPXXKEGYSGVGLLSRQC 138
Query: 149 PNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVK 207
P KV+YG+G + ++ GR + + + VPNAG GL L+ R WD+ F L
Sbjct: 139 PLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRRFLKG 198
Query: 208 LDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDK-GFTDSFRHLYP 266
L + KP++L GDLNV+H+ IDL NP N ++AGFT +ER F LL DSFRHLYP
Sbjct: 199 LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYP 258
Query: 267 KRTGAYTYWSYMSKTARSRNTGCT-NYF 293
AYT+W+YM ARS+N G +YF
Sbjct: 259 NTPYAYTFWTYMMN-ARSKNVGWRLDYF 285
>DICTYBASE|DDB_G0277701 [details] [associations]
symbol:apeA "DNA-(apurinic or apyrimidinic site)
lyase" species:44689 "Dictyostelium discoideum" [GO:0016889
"endodeoxyribonuclease activity, producing 3'-phosphomonoesters"
evidence=TAS] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic
or apyrimidinic site) lyase activity" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016829 "lyase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
dictyBase:DDB_G0277701 Pfam:PF03372 GO:GO:0005634 GO:GO:0046872
GO:GO:0006284 GO:GO:0003677 GenomeReviews:CM000151_GR GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:U31631 EMBL:AAFI02000021
PIR:S68268 RefSeq:XP_642518.1 ProteinModelPortal:P51173
STRING:P51173 EnsemblProtists:DDB0185018 GeneID:8621167
KEGG:ddi:DDB_G0277701 eggNOG:COG0708 KO:K10771 OMA:GIRACLK
ProtClustDB:CLSZ2453462 GO:GO:0016889 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 Uniprot:P51173
Length = 361
Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
Identities = 103/229 (44%), Positives = 148/229 (64%)
Query: 69 EEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKT 128
EE KI SWNVAG ++ + K +Y++KE+ D+ CLQETK + + + + K EY
Sbjct: 101 EENQMKIISWNVAGFKSVLSKGFTEYVEKENPDVLCLQETKINPSNIKKDQMPKGYEY-- 158
Query: 129 YWLSSPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGA- 186
+++ + + G+ G G+ TK KPN +T+G+G K+++ GR + + +PNAG
Sbjct: 159 HFIEADQKGHHGTGVLTKKKPNAITFGIGIAKHDNEGRVITLEYDQFYIVNTYIPNAGTR 218
Query: 187 GLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEE 245
GL+ LD R+ EWD F +L KL+A KP+I GDLNV+H IDL NP TN +SAGFTIEE
Sbjct: 219 GLQRLDYRIKEWDVDFQAYLEKLNATKPIIWCGDLNVAHTEIDLKNPKTNKKSAGFTIEE 278
Query: 246 RDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCT-NYF 293
R SFS+ L+KG+ DS+RH P + G+YT+WSY+ RS+N G +YF
Sbjct: 279 RTSFSNFLEKGYVDSYRHFNPGKEGSYTFWSYLGG-GRSKNVGWRLDYF 326
>UNIPROTKB|F1S8H5 [details] [associations]
symbol:APEX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0080111 "DNA demethylation" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0045739 "positive regulation of DNA
repair" evidence=IEA] [GO:0045454 "cell redox homeostasis"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0031490 "chromatin DNA binding" evidence=IEA]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0005730 GO:GO:0046872 GO:GO:0003684
GO:GO:0016607 GO:GO:0006281 GO:GO:0016491 GO:GO:0080111
GO:GO:0003713 GO:GO:0090305 GO:GO:0045454 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 GO:GO:0031490
GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF EMBL:CT955972
Ensembl:ENSSSCT00000002390 Uniprot:F1S8H5
Length = 317
Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
Identities = 117/267 (43%), Positives = 160/267 (59%)
Query: 33 KKTKSGS--VENKATGPMNEKLSLNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKKE 90
KK+K+G+ E +A G + L + D K + G+ KI SWNV GLRA +KK+
Sbjct: 24 KKSKAGAKKTEKEAAG---DGAVLYE-DPPDQKTSPSGKSATLKICSWNVDGLRAWIKKK 79
Query: 91 GLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS-SPKAGYAGVGLYTKVKP 149
GLD++K+E DI CLQETKC E +LP E++ YW + S K GY+GVGL ++ +
Sbjct: 80 GLDWVKEEAPDILCLQETKCSENKLPAELQELSGLPHQYWSAPSDKEGYSGVGLLSR-QC 138
Query: 150 NKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKL 208
KV+YG+G + ++ GR + + VPNAG GL L+ R WD+ F + L L
Sbjct: 139 LKVSYGIGEEEHDQEGRVIVAEFDAFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGL 198
Query: 209 DAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDK-GFTDSFRHLYPK 267
+ KP++L GDLNV+H+ IDL NP N ++AGFT +ER F LL DSFRHLYP
Sbjct: 199 ASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPN 258
Query: 268 RTGAYTYWSYMSKTARSRNTGCT-NYF 293
AYT+W+YM ARS+N G +YF
Sbjct: 259 TAYAYTFWTYMMN-ARSKNVGWRLDYF 284
>TIGR_CMR|BA_3868 [details] [associations]
symbol:BA_3868 "exodeoxyribonuclease III" species:198094
"Bacillus anthracis str. Ames" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142
GO:GO:0008853 HSSP:P27695 RefSeq:NP_846117.1 RefSeq:YP_020508.1
RefSeq:YP_029837.1 ProteinModelPortal:Q81WU8 DNASU:1087681
EnsemblBacteria:EBBACT00000011002 EnsemblBacteria:EBBACT00000017516
EnsemblBacteria:EBBACT00000022149 GeneID:1087681 GeneID:2815201
GeneID:2853014 KEGG:ban:BA_3868 KEGG:bar:GBAA_3868 KEGG:bat:BAS3584
OMA:ADVFCIQ ProtClustDB:CLSK917177
BioCyc:BANT260799:GJAJ-3643-MONOMER
BioCyc:BANT261594:GJ7F-3759-MONOMER Uniprot:Q81WU8
Length = 252
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 95/223 (42%), Positives = 144/223 (64%)
Query: 74 KIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K SWNV GLRA + K G L+Y+++ +ADIFCLQE K E Q+ V+ Y TYW
Sbjct: 2 KFISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQEGQIDLNVE----GYYTYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G +++K +P VTYGLG + ++ GR + + I PN+ GL+ L
Sbjct: 58 AVKKGYSGTAIFSKKEPLSVTYGLGIEEHDQEGRVITLEFEDFYIITLYTPNSKRGLERL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
+ R++W+ F ++ +LD +K V+ GDLNV+HK IDL NP +N ++ GF+ EER+ F+
Sbjct: 118 EYRMKWEDDFRAYIKRLDEKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTC 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCT-NYF 293
+L++GF D++R+LYP + GAY++WSY AR++N G +YF
Sbjct: 178 ILEEGFIDTYRYLYPDQEGAYSWWSYRMG-ARAKNIGWRLDYF 219
>UNIPROTKB|G3V5Q1 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634
GO:GO:0005813 GO:GO:0003677 GO:GO:0006281 GO:GO:0090305
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AL355075 HGNC:HGNC:587 ChiTaRS:APEX1
ProteinModelPortal:G3V5Q1 SMR:G3V5Q1 Ensembl:ENST00000555839
ArrayExpress:G3V5Q1 Bgee:G3V5Q1 Uniprot:G3V5Q1
Length = 242
Score = 247 (92.0 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
Identities = 48/95 (50%), Positives = 61/95 (64%)
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
G GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AGFT +
Sbjct: 147 GRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 206
Query: 245 ERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYM 278
ER F LL DSFRHLYP AYT+W+YM
Sbjct: 207 ERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM 241
Score = 244 (91.0 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
Identities = 56/127 (44%), Positives = 79/127 (62%)
Query: 33 KKTKSGSVENKATGPMNEKLSLNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGL 92
KK+K+ + +N E +L + D K + G+ KI SWNV GLRA +KK+GL
Sbjct: 24 KKSKTAAKKNDKEAA-GEGPALYE-DPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGL 81
Query: 93 DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK-TYWLS-SPKAGYAGVGLYTKVKPN 150
D++K+E DI CLQETKC E +LP E++ + P YW + S K GY+GVGL ++ P
Sbjct: 82 DWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPL 140
Query: 151 KVTYGLG 157
KV+YG+G
Sbjct: 141 KVSYGIG 147
>UNIPROTKB|G3V3M6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0007568 "aging" evidence=IEA]
[GO:0014912 "negative regulation of smooth muscle cell migration"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0045454 "cell
redox homeostasis" evidence=IEA] [GO:0045750 "positive regulation
of S phase of mitotic cell cycle" evidence=IEA] [GO:0051059
"NF-kappaB binding" evidence=IEA] [GO:0070301 "cellular response to
hydrogen peroxide" evidence=IEA] [GO:0071320 "cellular response to
cAMP" evidence=IEA] [GO:0071375 "cellular response to peptide
hormone stimulus" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] InterPro:IPR004808
InterPro:IPR020847 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005634 GO:GO:0005737 GO:GO:0005813 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0045454 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AL355075 HGNC:HGNC:587 ChiTaRS:APEX1
ProteinModelPortal:G3V3M6 SMR:G3V3M6 Ensembl:ENST00000553681
ArrayExpress:G3V3M6 Bgee:G3V3M6 Uniprot:G3V3M6
Length = 263
Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
Identities = 104/238 (43%), Positives = 144/238 (60%)
Query: 33 KKTKSGSVENKATGPMNEKLSLNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGL 92
KK+K+ + +N E +L + D K + G+ KI SWNV GLRA +KK+GL
Sbjct: 24 KKSKTAAKKNDKEAA-GEGPALYE-DPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGL 81
Query: 93 DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK-TYWLS-SPKAGYAGVGLYTKVKPN 150
D++K+E DI CLQETKC E +LP E++ + P YW + S K GY+GVGL ++ P
Sbjct: 82 DWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPL 140
Query: 151 KVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLD 209
KV+YG+G + ++ GR + + + VPNAG GL L+ R WD+ F + L L
Sbjct: 141 KVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLA 200
Query: 210 AEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDK-GFTDSFRHLYP 266
+ KP++L GDLNV+H+ IDL NP N ++AGFT +ER F LL DSFRHLYP
Sbjct: 201 SRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYP 258
>WB|WBGene00001372 [details] [associations]
symbol:exo-3 species:6239 "Caenorhabditis elegans"
[GO:0006281 "DNA repair" evidence=IEA;IMP] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IDA] [GO:0006284 "base-excision repair" evidence=IMP;IDA]
InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0006284 GO:GO:0004527
GO:GO:0090305 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
KO:K10771 OMA:GIRACLK PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 GO:GO:0008081 EMBL:Z81108
EMBL:AF034258 PIR:T24066 RefSeq:NP_001021584.1 UniGene:Cel.19620
HSSP:P27695 ProteinModelPortal:G5EBR7 SMR:G5EBR7 IntAct:G5EBR7
PRIDE:G5EBR7 EnsemblMetazoa:R09B3.1a.1 EnsemblMetazoa:R09B3.1a.2
GeneID:173069 KEGG:cel:CELE_R09B3.1 CTD:173069 WormBase:R09B3.1a
NextBio:878149 Uniprot:G5EBR7
Length = 288
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 104/234 (44%), Positives = 142/234 (60%)
Query: 63 KKNKLGEEPN----FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPE 118
KK K EE N +K WNVAGLRACVKK + E+ D+ L ETKC E PPE
Sbjct: 20 KKVKPAEEDNNQKSWKFVCWNVAGLRACVKKSDFKEVLAEEPDLVFLGETKCKEW--PPE 77
Query: 119 VKMKFPEY-KTYWLSSPK-AGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTF 175
++ F Y KT +S+ K GYAGVGL +K P KV G+G + GR + +
Sbjct: 78 MEETFKNYTKTLVVSTEKNGGYAGVGLLSKCAPMKVHKGIGDPEFDTAGRLIIAEFSKFY 137
Query: 176 YIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTN 235
+I VPN+GA L L+KR W+KL E + ++D +KPVI GDLNV+H IDL NP +N
Sbjct: 138 FIGAYVPNSGAKLVNLEKRGRWEKLLTEKMKEMDEKKPVIYGGDLNVAHNEIDLKNPESN 197
Query: 236 -TRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
++AGFT +ER FS +L+ GFTD+FR ++P Y++WSY++ + R ++ G
Sbjct: 198 RNKTAGFTDQERGWFSEMLELGFTDTFRAMHPDEK-KYSFWSYLANS-RQKDVG 249
>TAIR|locus:2060540 [details] [associations]
symbol:ARP "apurinic endonuclease-redox protein"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0042644
"chloroplast nucleoid" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0008284 "positive
regulation of cell proliferation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0016567 "protein ubiquitination"
evidence=RCA] [GO:0016571 "histone methylation" evidence=RCA]
[GO:0016579 "protein deubiquitination" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=RCA;TAS] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] [GO:0051276 "chromosome organization" evidence=RCA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA] InterPro:IPR003034 InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 Pfam:PF02037 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS50800 PROSITE:PS51435
SMART:SM00513 Pfam:PF03372 GO:GO:0005634 GO:GO:0045893
EMBL:CP002685 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
Gene3D:1.10.720.30 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AC004625 EMBL:X76912 IPI:IPI00529731
PIR:T02441 RefSeq:NP_181677.1 UniGene:At.25567
ProteinModelPortal:P45951 SMR:P45951 STRING:P45951 PaxDb:P45951
PRIDE:P45951 EnsemblPlants:AT2G41460.1 GeneID:818744
KEGG:ath:AT2G41460 TAIR:At2g41460 InParanoid:P45951 KO:K01142
OMA:IFNPAGN PhylomeDB:P45951 ProtClustDB:CLSN2683775
Genevestigator:P45951 GermOnline:AT2G41460 GO:GO:0042644
Uniprot:P45951
Length = 536
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 97/229 (42%), Positives = 131/229 (57%)
Query: 74 KIASWNVAGLRACVKKEG---LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK-TY 129
K+ +WNV GLR +K E L ++E+ DI CLQETK + K Y ++
Sbjct: 277 KVMTWNVNGLRGLLKFESFSALQLAQRENFDILCLQETKLQVKDVEEIKKTLIDGYDHSF 336
Query: 130 WLSS-PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAG 187
W S K GY+G + +++KP V YG G ++ GR + + + I VPN+G G
Sbjct: 337 WSCSVSKLGYSGTAIISRIKPLSVRYGTGLSGHDTEGRIVTAEFDSFYLINTYVPNSGDG 396
Query: 188 LKTLDKRLE-WDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEER 246
LK L R+E WD+ H+ +L+ KPV+L GDLN +H+ ID+ NP N RSAGFTIEER
Sbjct: 397 LKRLSYRIEEWDRTLSNHIKELEKSKPVVLTGDLNCAHEEIDIFNPAGNKRSAGFTIEER 456
Query: 247 DSF-SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCT-NYF 293
SF ++LLDKGF D+FR +P G YTYW Y R N G +YF
Sbjct: 457 QSFGANLLDKGFVDTFRKQHPGVVG-YTYWGYRHG-GRKTNKGWRLDYF 503
>UNIPROTKB|H7C4A8 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL355075
HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:H7C4A8 PRIDE:H7C4A8
Ensembl:ENST00000438886 Uniprot:H7C4A8
Length = 150
Score = 234 (87.4 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 48/96 (50%), Positives = 65/96 (67%)
Query: 63 KKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK 122
K + G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ +
Sbjct: 2 KTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ-E 60
Query: 123 FPEYK-TYWLS-SPKAGYAGVGLYTKVKPNKVTYGL 156
P YW + S K GY+GVGL ++ P KV+YG+
Sbjct: 61 LPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI 96
Score = 146 (56.5 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 28/52 (53%), Positives = 36/52 (69%)
Query: 181 VPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
VPNAG GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP
Sbjct: 99 VPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNP 150
>UNIPROTKB|F1M911 [details] [associations]
symbol:F1M911 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
IPI:IPI00777317 Ensembl:ENSRNOT00000055391 Uniprot:F1M911
Length = 278
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 83/224 (37%), Positives = 120/224 (53%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY-KTYWLS 132
+I+SW V GL AC++K+GLD +K+E DI CLQETKC + +L E++ + P + YW +
Sbjct: 37 QISSWEVGGLPACIQKKGLDCVKEETPDILCLQETKCSKNKLLAELQ-ELPGLTRQYWSA 95
Query: 133 -SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFY--IRKNVPNAGAGLK 189
S Y+GVGL + +K + EH + IV + VPNAG L
Sbjct: 96 PSDTEAYSGVGLLSTSAHSKSLLAFIGEAEH---DQEDRIVAELASCVITYVPNAGRSLV 152
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
L+ + WD+ F + L +KP++L G+LNV+H+ I L NP N ++A FT +ER F
Sbjct: 153 RLEYQQCWDEAFCKFL-----KKPLVLCGNLNVTHEEIYLCNPKGNKKNADFTPQERQGF 207
Query: 250 SSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNY 292
LL D+ RHLYP A + YM A R + +Y
Sbjct: 208 GELLQAVPLADNLRHLYPNTVYA-DFLDYMMD-AHPRTSFLLSY 249
>UNIPROTKB|F1M909 [details] [associations]
symbol:F1M909 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
IPI:IPI00779020 Ensembl:ENSRNOT00000055393 Uniprot:F1M909
Length = 292
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 77/198 (38%), Positives = 111/198 (56%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY-KTYWLS 132
+I+SW V GL AC++K+GLD +K+E DI CLQETKC + +L E++ + P + YW +
Sbjct: 54 QISSWEVGGLPACIQKKGLDCVKEETPDILCLQETKCSKNKLLAELQ-ELPGLTRQYWSA 112
Query: 133 -SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFY--IRKNVPNAGAGLK 189
S Y+GVGL + +K + EH + IV + VPNAG L
Sbjct: 113 PSDTEAYSGVGLLSTSAHSKSLLAFIGEAEH---DQEDRIVAELASCVITYVPNAGRSLV 169
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
L+ + WD+ F + L +KP++L G+LNV+H+ I L NP N ++A FT +ER F
Sbjct: 170 RLEYQQCWDEAFCKFL-----KKPLVLCGNLNVTHEEIYLCNPKGNKKNADFTPQERQGF 224
Query: 250 SSLLDK-GFTDSFRHLYP 266
LL D+ RHLYP
Sbjct: 225 GELLQAVPLADNLRHLYP 242
>UNIPROTKB|F1M910 [details] [associations]
symbol:F1M910 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
IPI:IPI00781547 Ensembl:ENSRNOT00000055392 Uniprot:F1M910
Length = 294
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 77/198 (38%), Positives = 111/198 (56%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY-KTYWLS 132
+I+SW V GL AC++K+GLD +K+E DI CLQETKC + +L E++ + P + YW +
Sbjct: 56 QISSWEVGGLPACIQKKGLDCVKEETPDILCLQETKCSKNKLLAELQ-ELPGLTRQYWSA 114
Query: 133 -SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFY--IRKNVPNAGAGLK 189
S Y+GVGL + +K + EH + IV + VPNAG L
Sbjct: 115 PSDTEAYSGVGLLSTSAHSKSLLAFIGEAEH---DQEDRIVAELASCVITYVPNAGRSLV 171
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
L+ + WD+ F + L +KP++L G+LNV+H+ I L NP N ++A FT +ER F
Sbjct: 172 RLEYQQCWDEAFCKFL-----KKPLVLCGNLNVTHEEIYLCNPKGNKKNADFTPQERQGF 226
Query: 250 SSLLDK-GFTDSFRHLYP 266
LL D+ RHLYP
Sbjct: 227 GELLQAVPLADNLRHLYP 244
>UNIPROTKB|G3V359 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL355075
HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:G3V359 SMR:G3V359
Ensembl:ENST00000557592 ArrayExpress:G3V359 Bgee:G3V359
Uniprot:G3V359
Length = 172
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 69/169 (40%), Positives = 99/169 (58%)
Query: 33 KKTKSGSVENKATGPMNEKLSLNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGL 92
KK+K+ + +N E +L + D K + G+ KI SWNV GLRA +KK+GL
Sbjct: 7 KKSKTAAKKNDKEAA-GEGPALYE-DPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGL 64
Query: 93 DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK-TYWLS-SPKAGYAGVGLYTKVKPN 150
D++K+E DI CLQETKC E +LP E++ + P YW + S K GY+GVGL ++ P
Sbjct: 65 DWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPL 123
Query: 151 KVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWD 198
KV+YG+G + ++ GR + + + VPNAG GL L+ R WD
Sbjct: 124 KVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWD 172
>TIGR_CMR|CJE_0305 [details] [associations]
symbol:CJE_0305 "exodeoxyribonuclease III" species:195099
"Campylobacter jejuni RM1221" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0006281 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142 GO:GO:0008853
RefSeq:YP_178325.1 ProteinModelPortal:Q5HWL0 STRING:Q5HWL0
GeneID:3231067 KEGG:cjr:CJE0305 PATRIC:20042312 OMA:IMKLLSW
ProtClustDB:CLSK878706 BioCyc:CJEJ195099:GJC0-310-MONOMER
Uniprot:Q5HWL0
Length = 259
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 74/222 (33%), Positives = 110/222 (49%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA K LD+I +E D QE K HE + P ++ ++P Y+ S+
Sbjct: 9 KLLSWNVNGLRAICDKNALDWIAQEQIDFIGFQEIKAHEDKFPKKI-YEYPFKHMYFNSA 67
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDK 193
+AGY+GV + N ++ GR N PN + L+
Sbjct: 68 KRAGYSGV--MSLCNFNSEVKKCEFFDDEEGRVLEHRFKNIALFNIYFPNGQKDEERLNF 125
Query: 194 RLEWDKLFHEHLVKLDAEK-PVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
++++ F +L KL + +I+ GD+N +HK IDL +P N ++GF ER L
Sbjct: 126 KMQFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAWIDDL 185
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCT-NYF 293
L GF D+FR + + Y++WSY K AR RN G +YF
Sbjct: 186 LKLGFIDTFREINGEIKEKYSWWSYRMK-ARERNVGWRIDYF 226
>UNIPROTKB|G3V5M0 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL355075
HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:G3V5M0 SMR:G3V5M0
Ensembl:ENST00000557150 ArrayExpress:G3V5M0 Bgee:G3V5M0
Uniprot:G3V5M0
Length = 162
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 65/159 (40%), Positives = 94/159 (59%)
Query: 33 KKTKSGSVENKATGPMNEKLSLNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGL 92
KK+K+ + +N E +L + D K + G+ KI SWNV GLRA +KK+GL
Sbjct: 7 KKSKTAAKKNDKEAA-GEGPALYE-DPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGL 64
Query: 93 DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK-TYWLS-SPKAGYAGVGLYTKVKPN 150
D++K+E DI CLQETKC E +LP E++ + P YW + S K GY+GVGL ++ P
Sbjct: 65 DWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPL 123
Query: 151 KVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGL 188
KV+YG+G + ++ GR + + + VPNAG GL
Sbjct: 124 KVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGL 162
>UNIPROTKB|G3V3C7 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0007568 "aging" evidence=IEA]
[GO:0014912 "negative regulation of smooth muscle cell migration"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0045454 "cell
redox homeostasis" evidence=IEA] [GO:0045750 "positive regulation
of S phase of mitotic cell cycle" evidence=IEA] [GO:0051059
"NF-kappaB binding" evidence=IEA] [GO:0070301 "cellular response to
hydrogen peroxide" evidence=IEA] [GO:0071320 "cellular response to
cAMP" evidence=IEA] [GO:0071375 "cellular response to peptide
hormone stimulus" evidence=IEA] InterPro:IPR004808
InterPro:IPR020847 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0045454 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL355075
HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:G3V3C7 SMR:G3V3C7
Ensembl:ENST00000556054 ArrayExpress:G3V3C7 Bgee:G3V3C7
Uniprot:G3V3C7
Length = 174
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 61/154 (39%), Positives = 90/154 (58%)
Query: 33 KKTKSGSVENKATGPMNEKLSLNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGL 92
KK+K+ + +N E +L + D K + G+ KI SWNV GLRA +KK+GL
Sbjct: 24 KKSKTAAKKNDKEAA-GEGPALYE-DPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGL 81
Query: 93 DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK-TYWLS-SPKAGYAGVGLYTKVKPN 150
D++K+E DI CLQETKC E +LP E++ + P YW + S K GY+GVGL ++ P
Sbjct: 82 DWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPL 140
Query: 151 KVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPN 183
KV+YG+G + ++ GR + + + VPN
Sbjct: 141 KVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPN 174
>TIGR_CMR|CBU_0297 [details] [associations]
symbol:CBU_0297 "exodeoxyribonuclease III" species:227377
"Coxiella burnetii RSA 493" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0008853 "exodeoxyribonuclease III activity" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0090305
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142 GO:GO:0008853
HSSP:P27695 OMA:ADVFCIQ RefSeq:NP_819340.1
ProteinModelPortal:Q83EM1 PRIDE:Q83EM1 GeneID:1208179
KEGG:cbu:CBU_0297 PATRIC:17929289 ProtClustDB:CLSK913965
BioCyc:CBUR227377:GJ7S-304-MONOMER Uniprot:Q83EM1
Length = 259
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 65/219 (29%), Positives = 115/219 (52%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETK-CHETQLPPEVKMKFPEYKTYWLS 132
+I + N+ G+RA ++ D++K++ ADI CLQETK C E + K Y Y+
Sbjct: 2 RIITLNLNGIRAAARRGFFDWLKRQKADIVCLQETKACLEITNGDQFHPK--GYHCYYHD 59
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K+GY+GVG+Y + KP++VT LG ++ + GR ++ + +P+ G
Sbjct: 60 AEKSGYSGVGIYCREKPDRVTTRLGWEHADKEGRYIQADFGSLSVASLYMPSGTTGEHRQ 119
Query: 192 DKRLEWDKLFHEHLVKL-DAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
+ ++ + + L + +++ I+ GD N+ HK ID+ N +N + +G EER
Sbjct: 120 KIKFDFMDRYMKRLKNIVHSKRSFIICGDWNIVHKEIDIKNFKSNQKYSGCLPEERAWLD 179
Query: 251 SLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+ K G D+FR + ++ YT+WS + A +N G
Sbjct: 180 EVFTKVGLVDAFR-VVNQKPDQYTWWSSRGR-AWEKNVG 216
>UNIPROTKB|F1PFY2 [details] [associations]
symbol:APEX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0080111 "DNA demethylation" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0045739 "positive
regulation of DNA repair" evidence=IEA] [GO:0045454 "cell redox
homeostasis" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR004808
PROSITE:PS51435 GO:GO:0005739 GO:GO:0005813 GO:GO:0048471
GO:GO:0005730 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0080111 GO:GO:0003713
GO:GO:0090305 GO:GO:0045454 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 GO:GO:0031490 GO:GO:0008081
GO:GO:0016890 GO:GO:0043488 EMBL:AAEX03000382
Ensembl:ENSCAFT00000035985 Uniprot:F1PFY2
Length = 284
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 77/225 (34%), Positives = 106/225 (47%)
Query: 60 SCNKKNKLGEEP-NFKIA-SWNVAGLRACV-KKEGLDYIKKEDADIFCLQETKCHETQLP 116
S ++ L EEP + K + S A L+ C +GL KK + ETKC E +L
Sbjct: 31 SAGERPVLYEEPPDQKTSPSGKSASLKICSWNADGLKCRKKPQRE-----ETKCSENKLS 85
Query: 117 PEVKMKFPEYKTYWLS--SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNT 174
E + + PE + S S K GY GVGL + P KV+YG G K ++ T
Sbjct: 86 AEPQ-ELPELSHQYRSVRSDKEGYRGVGLLSHPCPLKVSYGTGDKGHDLEGRVTEFVLET 144
Query: 175 FYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTT 234
Y VPN G L L + WD F + L L + + L GDL+V+H+ I L P
Sbjct: 145 AY----VPNTGGSLGCLVAQC-WDGAFCKFLKGLASHTSLGLCGDLSVAHEEIHLLYPKG 199
Query: 235 NTRSAGFTIEERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYM 278
N + AGFT +ER F LL + + P AYT+W+Y+
Sbjct: 200 NKQHAGFTRQERQGFGELLRLCHWLTVWGTSTPNLGYAYTFWTYV 244
>TIGR_CMR|NSE_0415 [details] [associations]
symbol:NSE_0415 "exodeoxyribonuclease III" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020848 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
KO:K01142 EMBL:CP000237 GenomeReviews:CP000237_GR
HOGENOM:HOG000034587 GO:GO:0008853 RefSeq:YP_506301.1
ProteinModelPortal:Q2GDZ5 STRING:Q2GDZ5 GeneID:3931772
KEGG:nse:NSE_0415 PATRIC:22680889 OMA:EKAFSWW
ProtClustDB:CLSK2528138 BioCyc:NSEN222891:GHFU-437-MONOMER
Uniprot:Q2GDZ5
Length = 265
Score = 185 (70.2 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 62/221 (28%), Positives = 101/221 (45%)
Query: 74 KIASWNVAGLRACVKKEGLD-YIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+A+WNV +R + E + + E+ D+ LQE KC E+ P V F + +
Sbjct: 8 KVATWNVNSIRQ--RAEAVSALLVSENLDVLLLQELKCQESDFPLHV---FNDLSYNVIL 62
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNE-HYGRNCNSNIVNTF-YIRKNVPNA-GAGLK 189
+ GY GV + ++ K++ + E Y S I +PNA AG
Sbjct: 63 KCQKGYNGVAIASRWPITKISDEIYMDGEARYIEGVISFFDKCIRLISIYIPNAQAAGSP 122
Query: 190 TLDKRLEW-DKLFHE-HLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERD 247
+ ++++ D L H L+ ++L GD+N + + ID+ +P GF IEER
Sbjct: 123 RFEYKMQFHDALARRIHGYLLNNNDIMLLGGDMNAAPEDIDVYDPVKLDGCTGFHIEERS 182
Query: 248 SFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
LL+ G D+FR YP + +++W Y + RN G
Sbjct: 183 KLRELLNLGLFDTFRMKYPTKQ-EFSWWDYRGGGLQ-RNEG 221
>UNIPROTKB|G3V5D9 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0007568 "aging" evidence=IEA]
[GO:0014912 "negative regulation of smooth muscle cell migration"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0045454 "cell
redox homeostasis" evidence=IEA] [GO:0045750 "positive regulation
of S phase of mitotic cell cycle" evidence=IEA] [GO:0051059
"NF-kappaB binding" evidence=IEA] [GO:0070301 "cellular response to
hydrogen peroxide" evidence=IEA] [GO:0071320 "cellular response to
cAMP" evidence=IEA] [GO:0071375 "cellular response to peptide
hormone stimulus" evidence=IEA] InterPro:IPR004808
InterPro:IPR020847 PROSITE:PS00726 Pfam:PF03372 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006281 GO:GO:0090305
GO:GO:0045454 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 EMBL:AL355075 HGNC:HGNC:587 ChiTaRS:APEX1
ProteinModelPortal:G3V5D9 SMR:G3V5D9 Ensembl:ENST00000557181
ArrayExpress:G3V5D9 Bgee:G3V5D9 Uniprot:G3V5D9
Length = 108
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 39/87 (44%), Positives = 54/87 (62%)
Query: 33 KKTKSGSVENKATGPMNEKLSLNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGL 92
KK+K+ + +N E +L + D K + G+ KI SWNV GLRA +KK+GL
Sbjct: 24 KKSKTAAKKNDKEAA-GEGPALYE-DPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGL 81
Query: 93 DYIKKEDADIFCLQETKCHETQLPPEV 119
D++K+E DI CLQETKC E +LP E+
Sbjct: 82 DWVKEEAPDILCLQETKCSENKLPAEL 108
>UNIPROTKB|P09030 [details] [associations]
symbol:xthA "exonuclease III" species:83333 "Escherichia
coli K-12" [GO:0005622 "intracellular" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;IDA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IDA] [GO:0008853
"exodeoxyribonuclease III activity" evidence=IEA;IDA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
EchoBASE:EB1066 Pfam:PF03372 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0005622
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 EMBL:X13002
EMBL:M22592 PIR:E64934 RefSeq:NP_416263.1 RefSeq:YP_490010.1
PDB:1AKO PDBsum:1AKO ProteinModelPortal:P09030 SMR:P09030
DIP:DIP-11148N IntAct:P09030 MINT:MINT-1243969 SWISS-2DPAGE:P09030
PaxDb:P09030 PRIDE:P09030 EnsemblBacteria:EBESCT00000001718
EnsemblBacteria:EBESCT00000016194 GeneID:12932910 GeneID:946254
KEGG:ecj:Y75_p1724 KEGG:eco:b1749 PATRIC:32118809 EcoGene:EG11073
HOGENOM:HOG000034587 OMA:EVNAKRW ProtClustDB:PRK11756
BioCyc:EcoCyc:EG11073-MONOMER BioCyc:ECOL316407:JW1738-MONOMER
BioCyc:MetaCyc:EG11073-MONOMER EvolutionaryTrace:P09030
Genevestigator:P09030 GO:GO:0008853 Uniprot:P09030
Length = 268
Score = 179 (68.1 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 63/222 (28%), Positives = 97/222 (43%)
Query: 74 KIASWNVAGLRACVKKEGLDYI-KKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K S+N+ GLRA + L+ I +K D+ LQETK H+ P E K Y ++
Sbjct: 2 KFVSFNINGLRA--RPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLG-YNVFYHG 58
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNC-----NSNIVNTFYIRKNVPNAGAG 187
+ G+ GV L TK P V G +E R S + N I P +
Sbjct: 59 --QKGHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESR 116
Query: 188 ---LKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTN------TRS 238
+K K + L + +L + PV+++GD+N+S +D+ N T
Sbjct: 117 DHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGK 176
Query: 239 AGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSK 280
F EER+ L+ G D+FRH P+ ++++ Y SK
Sbjct: 177 CSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSK 218
>TIGR_CMR|SO_3037 [details] [associations]
symbol:SO_3037 "exodeoxyribonuclease III" species:211586
"Shewanella oneidensis MR-1" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0008853 "exodeoxyribonuclease III activity" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS51435 Pfam:PF03372
GO:GO:0003677 GO:GO:0006281 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 OMA:EVNAKRW
ProtClustDB:PRK11756 GO:GO:0008853 HSSP:P09030 RefSeq:NP_718605.1
ProteinModelPortal:Q8ECT7 GeneID:1170722 KEGG:son:SO_3037
PATRIC:23525710 Uniprot:Q8ECT7
Length = 270
Score = 177 (67.4 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 65/224 (29%), Positives = 101/224 (45%)
Query: 74 KIASWNVAGLRACVKK-EGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
KI S+N+ GLR+ + + + L I DI LQETK H+ P +++ Y ++
Sbjct: 2 KIVSFNINGLRSRLHQLQAL--IDSHQPDIIGLQETKVHDEAFPL-AEVEAMGYHVHYHG 58
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRN------CNSNIVNTFYIRKNVPNAGA 186
KA Y GV + +KV P KV G T E R +N + P G
Sbjct: 59 G-KAHY-GVAMLSKVAPLKVQKGFATDEEDAQRRMIIGTFAQANGRPLTVLNGYFPQ-GE 115
Query: 187 GLKTLDKRLEWDKLFHEHLVKLDA----EKPVILIGDLNVSHKPIDLANPTTN------T 236
+ K K + + + L A ++ + +IGD+N+S +D+ N T
Sbjct: 116 SIDHPTKYPAKRKFYQDLMAHLHANHSNDEDIAIIGDINISPIDLDIGIGEVNRKRWLKT 175
Query: 237 RSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSK 280
F EER+ +L D G D+FR L+P R+ Y+++ Y SK
Sbjct: 176 GKCSFQPEEREWLKTLQDWGLVDTFRQLHPDRSERYSWFDYRSK 219
>UNIPROTKB|Q9KQY7 [details] [associations]
symbol:VC1860 "Exodeoxyribonuclease III" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006281 "DNA
repair" evidence=ISS] [GO:0008853 "exodeoxyribonuclease III
activity" evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GenomeReviews:AE003852_GR GO:GO:0006281
GO:GO:0005622 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 OMA:EVNAKRW
ProtClustDB:PRK11756 GO:GO:0008853 HSSP:P09030 EMBL:AE004261
PIR:G82148 RefSeq:NP_231494.1 ProteinModelPortal:Q9KQY7 SMR:Q9KQY7
DNASU:2613614 GeneID:2613614 KEGG:vch:VC1860 PATRIC:20082762
Uniprot:Q9KQY7
Length = 268
Score = 175 (66.7 bits), Expect = 5.9e-12, P = 5.9e-12
Identities = 61/226 (26%), Positives = 109/226 (48%)
Query: 74 KIASWNVAGLRACVKK-EGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ S+N+ GLRA + + + L I K D+ LQE K H+ P + +++ Y+ Y+
Sbjct: 2 KVISFNINGLRARLHQLQAL--IDKHQPDVIGLQEIKVHDEAFPRQ-EVEAMGYQVYF-H 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRN------CNSNIVNTFYIRKNVPNAGA 186
KA Y GV + K P +V G T NE + + + N T + P G
Sbjct: 58 GQKAHY-GVAILCKQTPVEVIKGFPTDNEEHQKRMIMATFADQNGQKTTILNGYFPQ-GD 115
Query: 187 GLKTLDKRLEWDKLFHEHLV------KLDAEKPVILIGDLNVSHKPIDLANPTTN----- 235
++ + + + + F+ L+ + ++E+ V++ GD+N+S +D+ N
Sbjct: 116 NVEH-ETKFPYKRQFYRDLMTYLREHRSNSERLVVM-GDINISPLDLDIGIGEANRKRWL 173
Query: 236 -TRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSK 280
T F EER+ +LLD G D+FR L+P + ++++ Y S+
Sbjct: 174 QTGKCSFQPEEREWLQTLLDWGLVDTFRQLHPDVSDQFSWFDYRSR 219
>TIGR_CMR|VC_1860 [details] [associations]
symbol:VC_1860 "exodeoxyribonuclease III" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GenomeReviews:AE003852_GR GO:GO:0006281
GO:GO:0005622 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 OMA:EVNAKRW
ProtClustDB:PRK11756 GO:GO:0008853 HSSP:P09030 EMBL:AE004261
PIR:G82148 RefSeq:NP_231494.1 ProteinModelPortal:Q9KQY7 SMR:Q9KQY7
DNASU:2613614 GeneID:2613614 KEGG:vch:VC1860 PATRIC:20082762
Uniprot:Q9KQY7
Length = 268
Score = 175 (66.7 bits), Expect = 5.9e-12, P = 5.9e-12
Identities = 61/226 (26%), Positives = 109/226 (48%)
Query: 74 KIASWNVAGLRACVKK-EGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ S+N+ GLRA + + + L I K D+ LQE K H+ P + +++ Y+ Y+
Sbjct: 2 KVISFNINGLRARLHQLQAL--IDKHQPDVIGLQEIKVHDEAFPRQ-EVEAMGYQVYF-H 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRN------CNSNIVNTFYIRKNVPNAGA 186
KA Y GV + K P +V G T NE + + + N T + P G
Sbjct: 58 GQKAHY-GVAILCKQTPVEVIKGFPTDNEEHQKRMIMATFADQNGQKTTILNGYFPQ-GD 115
Query: 187 GLKTLDKRLEWDKLFHEHLV------KLDAEKPVILIGDLNVSHKPIDLANPTTN----- 235
++ + + + + F+ L+ + ++E+ V++ GD+N+S +D+ N
Sbjct: 116 NVEH-ETKFPYKRQFYRDLMTYLREHRSNSERLVVM-GDINISPLDLDIGIGEANRKRWL 173
Query: 236 -TRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSK 280
T F EER+ +LLD G D+FR L+P + ++++ Y S+
Sbjct: 174 QTGKCSFQPEEREWLQTLLDWGLVDTFRQLHPDVSDQFSWFDYRSR 219
>TIGR_CMR|SPO_2509 [details] [associations]
symbol:SPO_2509 "exodeoxyribonuclease III" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0008853 "exodeoxyribonuclease III activity" evidence=ISS]
InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006281 GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 GO:GO:0008853
RefSeq:YP_167724.1 ProteinModelPortal:Q5LQI1 GeneID:3194499
KEGG:sil:SPO2509 PATRIC:23378419 OMA:KYPYKLA ProtClustDB:CLSK933885
Uniprot:Q5LQI1
Length = 268
Score = 167 (63.8 bits), Expect = 7.7e-11, P = 7.7e-11
Identities = 63/232 (27%), Positives = 107/232 (46%)
Query: 74 KIASWNVAGLRACVKKEGLD-YIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
KIA++N+ G++A + E L ++ D+ LQE K + P E+ F E + Y +
Sbjct: 2 KIATFNINGIKA--RAEALPAWLDSAQPDVALLQEIKSVDESFPREM---FEE-RGYNVE 55
Query: 133 SP-KAGYAGVGLYTKVKPNKVTYGL-GTKNEHYGRNCNSNIVNTFYIRK---NVPNAGAG 187
+ + G+ GV + +K+ V+ GL G ++ R + +V +R +PN
Sbjct: 56 THGQKGFNGVAILSKLPLEDVSRGLPGDDSDEQARWIEATVVGKQALRLCGLYLPNGNPV 115
Query: 188 LKT----------LDKRLEWDKLFHEHLVKL-DAEKPVILIGDLNVSHKPIDLANPTTNT 236
T D +L W + +L AE+P ++ GD N+ + D P
Sbjct: 116 ELTESGDPVPGGKYDYKLRWMERLQARATELMAAEEPALMAGDYNIIPQAEDAKRPEAWR 175
Query: 237 RSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
A F E R +F +L+ GFT++FR + G Y++W Y + A +RN G
Sbjct: 176 EDALFRPESRAAFRRILNLGFTEAFRARV-QGPGHYSFWDYQAG-AWNRNDG 225
>TIGR_CMR|ECH_0675 [details] [associations]
symbol:ECH_0675 "exodeoxyribonuclease III" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006281 GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 GO:GO:0008853
OMA:EKAFSWW RefSeq:YP_507482.1 ProteinModelPortal:Q2GGF1
STRING:Q2GGF1 GeneID:3927975 KEGG:ech:ECH_0675 PATRIC:20576802
ProtClustDB:CLSK749128 BioCyc:ECHA205920:GJNR-677-MONOMER
Uniprot:Q2GGF1
Length = 281
Score = 136 (52.9 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 51/170 (30%), Positives = 81/170 (47%)
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCN-SNIVNTFYIRKN---------VPN 183
P G +++ +K+ Y L ++N Y NC+ S + + N VPN
Sbjct: 74 PIVGELVTSIFSSDYKSKLCYELSSENFIY--NCDESRYLECVVLHHNIKIRIASIYVPN 131
Query: 184 AGAGLKT--LDKRLEWDKLFHEHLVKL-DAEKPVILIGDLNVSHKPIDLANPTTNTRSAG 240
G + + +L + EH + L E+ +IL GD NV+ PID+ +P
Sbjct: 132 -GQSIDSDAFQYKLGFFDQLREHALSLLKKEEILILGGDYNVAPYPIDVYDPEVMDGKLC 190
Query: 241 FTIEERDSFSSLLDKGFTDSFRHL--YPKRTGAYTYWSYMSKTARSRNTG 288
F ER+ F S+L+ GFTDSFR L Y K+ +++W+Y + A +N G
Sbjct: 191 FHKSEREKFRSILNLGFTDSFRVLNDYEKK---FSWWNYKAG-AWQQNRG 236
Score = 70 (29.7 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 25/74 (33%), Positives = 38/74 (51%)
Query: 74 KIASWNVAGLRACVKKEGL-DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
KIA+WNV +R + + L +++ DI LQE KC + Q P ++ YK Y +
Sbjct: 4 KIATWNVNSIRK--RLDHLCNWLINSAIDIALLQEIKCTDEQFP-FFDVESLGYKCY-VH 59
Query: 133 SPKAGYAGVGLYTK 146
KA GV + T+
Sbjct: 60 GQKARN-GVAIITR 72
>RGD|1586200 [details] [associations]
symbol:Apex2l1 "APEX nuclease (apurinic/apyrimidinic
endonuclease) 2-like 1" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435
Pfam:PF03372 RGD:1586200 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:27301
KO:K10772 OrthoDB:EOG4NS3BQ OMA:FIDSYRC IPI:IPI00364584
RefSeq:XP_001059968.1 RefSeq:XP_223499.3 PRIDE:D3ZHV4
Ensembl:ENSRNOT00000038157 GeneID:289662 KEGG:rno:289662
NextBio:630125 Uniprot:D3ZHV4
Length = 516
Score = 110 (43.8 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 35/90 (38%), Positives = 46/90 (51%)
Query: 208 LDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEER--DSFSSLLD--KG-----FT 258
L A VI++GD+N +H PID N N + R D S L+ G F
Sbjct: 185 LAAGSHVIILGDINTAHHPIDHCN-AGNLECFEEDLGRRWMDGLLSNLEYPAGSHIGPFM 243
Query: 259 DSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
DS+R+ YPK+ A+T WS +S ARS N G
Sbjct: 244 DSYRYFYPKQERAFTCWSMISG-ARSLNYG 272
Score = 103 (41.3 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 50/164 (30%), Positives = 74/164 (45%)
Query: 74 KIASWNVAGLRACVKKEG----------LDYIKKE-DADIFCLQETKCHETQLPPEVKMK 122
++ SWN+ G+R ++ G L +I +E DADI CLQETK L + +
Sbjct: 3 RVVSWNINGIRRPLQGLGCEVTSNCPTALRHILRELDADIVCLQETKVSRDALTEPLAV- 61
Query: 123 FPEYKTYW-LSSPKAGYAGVGLYTK--VKPNKVTYGLG----TKNEHYGRNCNSNIVNTF 175
Y +Y+ S ++GY+GV + K V P GL T + H G C N+ N F
Sbjct: 62 VEGYNSYFSFSRSRSGYSGVATFCKDSVTPVAAEEGLSGQFATLSGHVG--CYGNM-NEF 118
Query: 176 YIRKNVPNAGAGLKTLDKRLEWDKLFHEHLV--KLDAEKPVILI 217
+ L+ LD E L +H + + EKP+ LI
Sbjct: 119 TQEQ--------LRALDS--EGRALLTQHKICTQEGKEKPLTLI 152
>ZFIN|ZDB-GENE-040426-835 [details] [associations]
symbol:apex2 "APEX nuclease (apurinic/apyrimidinic
endonuclease) 2" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
ZFIN:ZDB-GENE-040426-835 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:27301 HOVERGEN:HBG054715 KO:K10772 HSSP:P27695 EMBL:BC044527
IPI:IPI00484464 RefSeq:NP_956440.1 UniGene:Dr.116061
ProteinModelPortal:Q803D4 STRING:Q803D4 GeneID:393115
KEGG:dre:393115 InParanoid:Q803D4 NextBio:20814188
ArrayExpress:Q803D4 Uniprot:Q803D4
Length = 558
Score = 109 (43.4 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 28/75 (37%), Positives = 40/75 (53%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKE-DADIFCLQETKCHETQLPPEVKMKFPEYKTYW-L 131
KI +WN+ G+R K G+ I DADI C+QETK L + + Y +Y+
Sbjct: 2 KIVTWNINGIRTF--KNGIKKILDSFDADIICVQETKVTRDLLDEKTAI-VDGYNSYFSF 58
Query: 132 SSPKAGYAGVGLYTK 146
S ++GY+GV Y K
Sbjct: 59 SRGRSGYSGVATYCK 73
Score = 90 (36.7 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 24/71 (33%), Positives = 34/71 (47%)
Query: 221 NVSHKPID--LANPTTNTRSAGFTIEERDSFSSLLDKG-FTDSFRHLYPKRTGAYTYWSY 277
N K +D L N+ + E + F G F DSFR+ +PKR+ A+T WS
Sbjct: 204 NPGRKWLDQFLFETAENSENGNAADEPAEDFQESASGGKFVDSFRYFHPKRSNAFTCWST 263
Query: 278 MSKTARSRNTG 288
++ AR N G
Sbjct: 264 LTG-ARQTNYG 273
Score = 68 (29.0 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 208 LDAEKPVILIGDLNVSHKPIDLANP 232
L + VI++GD+N SH+PID +P
Sbjct: 171 LSSGSHVIILGDVNTSHRPIDHCDP 195
>TAIR|locus:505006392 [details] [associations]
symbol:AT3G48425 species:3702 "Arabidopsis thaliana"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=ISS] [GO:0009507 "chloroplast"
evidence=IDA] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0009507 EMBL:CP002686 GO:GO:0006281 GO:GO:0004527
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:BT015809
EMBL:BT020215 IPI:IPI00532252 RefSeq:NP_566904.2 UniGene:At.50257
ProteinModelPortal:Q5XF07 SMR:Q5XF07 STRING:Q5XF07 PaxDb:Q5XF07
PRIDE:Q5XF07 EnsemblPlants:AT3G48425.1 GeneID:824001
KEGG:ath:AT3G48425 OMA:KWDKRML ProtClustDB:CLSN2680895
Genevestigator:Q5XF07 Uniprot:Q5XF07
Length = 364
Score = 147 (56.8 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 54/170 (31%), Positives = 79/170 (46%)
Query: 123 FPEYKTYWLSSPKAGYAGVGLYTK--VKPNKVTYGL---GTKNEHYGRNCNSNIVNTFYI 177
F Y +W S + YAG L K KP KV + L +K+E GR + TF +
Sbjct: 121 FGNYGVWW-SLADSKYAGTALLVKKCFKPRKVYFNLDKLASKHEPDGRVILAEF-ETFRL 178
Query: 178 RKNV-PNAG--AGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPT- 233
PN G +R +WDK E L K ++KP+I GDLNVSH+ ID+++P
Sbjct: 179 LNTYSPNNGWKDEENAFQRRRKWDKRIVEFLNKT-SDKPLIWCGDLNVSHEEIDVSHPEF 237
Query: 234 -----------TNTRSAG---FTIEERDSFSSLLDKG-FTDSFRHLYPKR 268
N G FT ER F + + +G D++R+L+ ++
Sbjct: 238 FATAKLNGYVPPNKEDCGQPGFTPSERGRFGATIKEGRLVDAYRYLHKEQ 287
>TIGR_CMR|SPO_3425 [details] [associations]
symbol:SPO_3425 "exodeoxyribonuclease III, putative"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587
RefSeq:YP_168621.1 ProteinModelPortal:Q5LMY7 GeneID:3195340
KEGG:sil:SPO3425 PATRIC:23380309 OMA:KWVDITR ProtClustDB:CLSK863995
Uniprot:Q5LMY7
Length = 262
Score = 141 (54.7 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 59/228 (25%), Positives = 102/228 (44%)
Query: 73 FKIASWNVAGLRACVKKEGL--DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYW 130
F +A+WN+ +R +E + + +E DI CLQE K ++P E Y+ +
Sbjct: 3 FTLATWNINSVRL---REPIVCKLLAEEGPDILCLQEIKSPVDKMPVEGFADLG-YR-HV 57
Query: 131 LSSPKAGYAGVGLYTKVKPNKV---TYG-LGTKNEHYGRNCNSNIVNTFYIRK--NVPNA 184
++ + GY GV + +++ +V + LG R N ++ FY+ +VP+
Sbjct: 58 VAHGQKGYNGVAILSRLPIEEVGREDFATLGHARHVAARLENGVTIHNFYVPAGGDVPDR 117
Query: 185 GAGLK---TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGF 241
K LD E FH + A + IL+GDLN++ + D+ N +
Sbjct: 118 EVNEKFGQKLDYLTEMRDWFHAN-----APEKSILVGDLNIAPREDDVWNHKQLLKIVSH 172
Query: 242 TIEERDSFSSLLDKG-FTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
T E D ++D G + D R P+ Y++WSY +K + + G
Sbjct: 173 TPIEVDHLGQVMDSGKWVDITRQDIPQGL-LYSWWSYRAKDWSAADKG 219
>UNIPROTKB|F1RUD3 [details] [associations]
symbol:LOC100519003 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005634 GO:GO:0005743 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 KO:K10772
OMA:FIDSYRC EMBL:CU856438 RefSeq:XP_003135157.1
Ensembl:ENSSSCT00000013503 GeneID:100519003 KEGG:ssc:100519003
Uniprot:F1RUD3
Length = 515
Score = 98 (39.6 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 38/112 (33%), Positives = 55/112 (49%)
Query: 193 KRLEWDKLFHEHLVKLDAE------KPVILIGDLNVSHKPID---LANPTTNTRSAGFTI 243
+RL + F+ HL+++ AE VI++GDLN +H+PID N G
Sbjct: 166 ERLTFKMRFY-HLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGR-- 222
Query: 244 EERDSFSSLL--DKG-----FTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+ D S L G F DS+R+ PK+ GA+T WS ++ AR N G
Sbjct: 223 KWMDGLLSNLRCQAGSHMGPFIDSYRYFQPKQKGAFTCWSTVTG-ARHLNYG 273
Score = 92 (37.4 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 74 KIASWNVAGLRACVKKEGLD------------YIKKEDADIFCLQETKCHETQLPPEVKM 121
++ SWN+ G+R+ ++ G + + K DADI CLQETK L + +
Sbjct: 3 RVVSWNINGIRSHLQGAGYEEPSNCTARAVGRILDKLDADIVCLQETKVTRDVLTEPLAI 62
Query: 122 KFPEYKTYW-LSSPKAGYAGVGLYTK 146
Y +Y+ S ++GY+GV + K
Sbjct: 63 -IEGYNSYFSFSRNRSGYSGVATFCK 87
>UNIPROTKB|F1MSK4 [details] [associations]
symbol:APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2"
species:9913 "Bos taurus" [GO:0005743 "mitochondrial inner
membrane" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005634 GO:GO:0005743 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 IPI:IPI00696158 UniGene:Bt.1184
OMA:FIDSYRC EMBL:DAAA02073320 EMBL:DAAA02073321
Ensembl:ENSBTAT00000017537 ArrayExpress:F1MSK4 Uniprot:F1MSK4
Length = 514
Score = 95 (38.5 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 34/91 (37%), Positives = 44/91 (48%)
Query: 208 LDAEKPVILIGDLNVSHKPID---LANPTTNTRSAGFTIEERDSFSSLL--DKG-----F 257
L A VI++GDLN +H+PID N G + D S L + G F
Sbjct: 186 LAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGR--KWMDGLLSNLGCESGSHMGPF 243
Query: 258 TDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
DS+R PK+ GA+T WS +S AR N G
Sbjct: 244 IDSYRCFQPKQKGAFTCWSTVSG-ARHLNYG 273
Score = 93 (37.8 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 40/145 (27%), Positives = 62/145 (42%)
Query: 74 KIASWNVAGLRA------CVKKEGLD------YIKKEDADIFCLQETKCHETQLPPEVKM 121
++ SWN+ G+R+ C + + K DADI CLQETK L + +
Sbjct: 3 RLVSWNINGIRSPLQGVRCEEPSSCSAMAMGRILDKLDADIVCLQETKVTRDVLTEPLAI 62
Query: 122 KFPEYKTYW-LSSPKAGYAGVGLYTK--VKPNKVTYGLG----TKNEHYGRNCNSNIVN- 173
Y +Y+ S ++GY+GV + K P GL T+N G C N+ +
Sbjct: 63 -IEGYNSYFSFSRNRSGYSGVATFCKDSATPVAAEEGLSGLLSTQNGDVG--CYGNMDDF 119
Query: 174 TFYIRKNVPNAGAGLKTLDKRLEWD 198
T + + + G L T K W+
Sbjct: 120 TQEELRALDSEGRALLTQHKICTWE 144
>UNIPROTKB|Q5E9N9 [details] [associations]
symbol:APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005739 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0007049 GO:GO:0006310
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:BT020881 EMBL:BT021707 IPI:IPI00696158
RefSeq:NP_001015577.1 UniGene:Bt.1184 ProteinModelPortal:Q5E9N9
STRING:Q5E9N9 PRIDE:Q5E9N9 GeneID:511790 KEGG:bta:511790 CTD:27301
HOGENOM:HOG000231386 HOVERGEN:HBG054715 InParanoid:Q5E9N9 KO:K10772
OrthoDB:EOG4NS3BQ NextBio:20870098 Uniprot:Q5E9N9
Length = 514
Score = 95 (38.5 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 34/91 (37%), Positives = 44/91 (48%)
Query: 208 LDAEKPVILIGDLNVSHKPID---LANPTTNTRSAGFTIEERDSFSSLL--DKG-----F 257
L A VI++GDLN +H+PID N G + D S L + G F
Sbjct: 186 LAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGR--KWMDGLLSNLGCESGSHMGPF 243
Query: 258 TDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
DS+R PK+ GA+T WS +S AR N G
Sbjct: 244 IDSYRCFQPKQKGAFTCWSTVSG-ARHLNYG 273
Score = 93 (37.8 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 40/145 (27%), Positives = 62/145 (42%)
Query: 74 KIASWNVAGLRA------CVKKEGLD------YIKKEDADIFCLQETKCHETQLPPEVKM 121
++ SWN+ G+R+ C + + K DADI CLQETK L + +
Sbjct: 3 RLVSWNINGIRSPLQGVRCEEPSSCSAMAMGRILDKLDADIVCLQETKVTRDVLTEPLAI 62
Query: 122 KFPEYKTYW-LSSPKAGYAGVGLYTK--VKPNKVTYGLG----TKNEHYGRNCNSNIVN- 173
Y +Y+ S ++GY+GV + K P GL T+N G C N+ +
Sbjct: 63 -IEGYNSYFSFSRNRSGYSGVATFCKDSATPVAAEEGLSGLLSTQNGDVG--CYGNMDDF 119
Query: 174 TFYIRKNVPNAGAGLKTLDKRLEWD 198
T + + + G L T K W+
Sbjct: 120 TQEELRALDSEGRALLTQHKICTWE 144
>MGI|MGI:1924872 [details] [associations]
symbol:Apex2 "apurinic/apyrimidinic endonuclease 2"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005743 "mitochondrial inner membrane"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016829 "lyase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS00727
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 MGI:MGI:1924872
GO:GO:0005634 GO:GO:0005743 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0007049 GO:GO:0006310
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 CTD:27301
HOVERGEN:HBG054715 KO:K10772 OrthoDB:EOG4NS3BQ EMBL:AB072498
EMBL:AB085235 EMBL:AK021248 EMBL:AK040145 EMBL:AK050858
EMBL:AK080916 EMBL:AK081677 EMBL:AK088918 EMBL:BC026769
EMBL:BC078633 IPI:IPI00225176 IPI:IPI00473955 IPI:IPI00473962
IPI:IPI00474999 IPI:IPI00828973 RefSeq:NP_084219.1
UniGene:Mm.440275 ProteinModelPortal:Q68G58 SMR:Q68G58
STRING:Q68G58 PhosphoSite:Q68G58 PRIDE:Q68G58
Ensembl:ENSMUST00000112725 Ensembl:ENSMUST00000112727 GeneID:77622
KEGG:mmu:77622 NextBio:347242 Bgee:Q68G58 CleanEx:MM_APEX2
Genevestigator:Q68G58 GermOnline:ENSMUSG00000025269 Uniprot:Q68G58
Length = 516
Score = 96 (38.9 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 208 LDAEKPVILIGDLNVSHKPIDLANPTT---------NTRSAGFTIEERDSFSSLLDKGFT 258
L A VI++GDLN +H+PID + ++ G D + F
Sbjct: 185 LAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLSNPGDEAGPHIGL-FM 243
Query: 259 DSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
DS+R+L+PK+ A+T WS +S AR N G
Sbjct: 244 DSYRYLHPKQQRAFTCWSVVSG-ARHLNYG 272
Score = 90 (36.7 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 28/85 (32%), Positives = 42/85 (49%)
Query: 74 KIASWNVAGLR------ACVKKEG----LDYIKKE-DADIFCLQETKCHETQLPPEVKMK 122
++ SWN+ G+R AC + L + E DADI CLQETK L + +
Sbjct: 3 RVVSWNINGIRSPLQGLACQEPSSCPTALRRVLDELDADIVCLQETKVTRDVLTEPLAI- 61
Query: 123 FPEYKTYW-LSSPKAGYAGVGLYTK 146
Y +Y+ S ++GY+GV + K
Sbjct: 62 VEGYNSYFSFSRSRSGYSGVATFCK 86
>UNIPROTKB|J9NYZ7 [details] [associations]
symbol:APEX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 OMA:FIDSYRC
EMBL:AAEX03026400 EMBL:AAEX03026401 Ensembl:ENSCAFT00000049032
Uniprot:J9NYZ7
Length = 515
Score = 93 (37.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 41/145 (28%), Positives = 63/145 (43%)
Query: 74 KIASWNVAGLRACVKKEGLDY--------------IKKEDADIFCLQETKCHETQLPPEV 119
++ SWN+ G+R+ + +G+ Y + K DADI CLQETK T + +
Sbjct: 3 RVVSWNINGIRSPL--QGMVYEEPSNCAAMAMGRILDKLDADIVCLQETKV-TTHVLCQX 59
Query: 120 KMKFPEYKTY-WLSSPKAGYAGVGLYTK--VKPNKVTYGL-GTKNEHYGR-NCNSNIVN- 173
Y +Y + S ++GY+GV + K P GL G H G C N+
Sbjct: 60 LAIIEGYNSYSFFSRNRSGYSGVATFCKDSATPMAAEEGLSGLLATHNGDVGCYGNMDEF 119
Query: 174 TFYIRKNVPNAGAGLKTLDKRLEWD 198
T + + + G L T K W+
Sbjct: 120 TQEELRALDSEGRALLTQHKIRTWE 144
Score = 90 (36.7 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 39/119 (32%), Positives = 54/119 (45%)
Query: 182 PNAGAGL-KTLDKRLEWDKLFHEHL-VKLDAEKPVILIGDLNVSHKPID---LANPTTNT 236
P+A AG + L ++ + +L L A VI++GDLN +H PID N
Sbjct: 158 PHADAGKPERLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHCPIDHWDAVNLECFE 217
Query: 237 RSAGFTIEERDSFSSLLD-------KGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
G + D S L + F DS+R PK+ GA+T WS +S AR N G
Sbjct: 218 EDPGR--KWMDGLLSNLGCQAGSHVRPFIDSYRCFQPKQEGAFTCWSAVSG-ARHLNYG 273
>UNIPROTKB|E2RCW8 [details] [associations]
symbol:APEX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 EMBL:AAEX03026400
EMBL:AAEX03026401 Ensembl:ENSCAFT00000022737 Uniprot:E2RCW8
Length = 515
Score = 92 (37.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 40/145 (27%), Positives = 63/145 (43%)
Query: 74 KIASWNVAGLRACVKKEGLDY--------------IKKEDADIFCLQETKCHETQLPPEV 119
++ SWN+ G+R+ + +G+ Y + K DADI CLQETK + +
Sbjct: 3 RVVSWNINGIRSPL--QGMVYEEPSNCAAMAMGRILDKLDADIVCLQETKVTSERXXXXL 60
Query: 120 KMKFPEYKTY-WLSSPKAGYAGVGLYTK--VKPNKVTYGL-GTKNEHYGR-NCNSNIVN- 173
+ Y +Y + S ++GY+GV + K P GL G H G C N+
Sbjct: 61 AI-IEGYNSYSFFSRNRSGYSGVATFCKDSATPMAAEEGLSGLLATHNGDVGCYGNMDEF 119
Query: 174 TFYIRKNVPNAGAGLKTLDKRLEWD 198
T + + + G L T K W+
Sbjct: 120 TQEELRALDSEGRALLTQHKIRTWE 144
Score = 90 (36.7 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 39/119 (32%), Positives = 54/119 (45%)
Query: 182 PNAGAGL-KTLDKRLEWDKLFHEHL-VKLDAEKPVILIGDLNVSHKPID---LANPTTNT 236
P+A AG + L ++ + +L L A VI++GDLN +H PID N
Sbjct: 158 PHADAGKPERLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHCPIDHWDAVNLECFE 217
Query: 237 RSAGFTIEERDSFSSLLD-------KGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
G + D S L + F DS+R PK+ GA+T WS +S AR N G
Sbjct: 218 EDPGR--KWMDGLLSNLGCQAGSHVRPFIDSYRCFQPKQEGAFTCWSAVSG-ARHLNYG 273
>POMBASE|SPBC3D6.10 [details] [associations]
symbol:apn2 "AP-endonuclease Apn2" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004528 "phosphodiesterase I activity" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006284 "base-excision
repair" evidence=IC] [GO:0008311 "double-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=IMP] [GO:0034614
"cellular response to reactive oxygen species" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 PomBase:SPBC3D6.10
Pfam:PF03372 GO:GO:0005634 GO:GO:0006284 GO:GO:0003677
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0034614 GO:GO:0004519
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 GO:GO:0004528 KO:K10772
OMA:FIDSYRC GO:GO:0008311 EMBL:AY483158 PIR:T40370
RefSeq:NP_595522.1 ProteinModelPortal:P87175 STRING:P87175
EnsemblFungi:SPBC3D6.10.1 GeneID:2540679 KEGG:spo:SPBC3D6.10
OrthoDB:EOG4GQTDH NextBio:20801803 Uniprot:P87175
Length = 523
Score = 92 (37.4 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 28/82 (34%), Positives = 39/82 (47%)
Query: 74 KIASWNVAGLRACV------KKEGLDYIKKE-DADIFCLQETKCHETQLPPE--VKMKFP 124
+I SWNV G++ KK I +E AD+ C+QE K + P + V F
Sbjct: 2 RILSWNVNGIQNPFNYFPWNKKNSYKEIFQELQADVICVQELKMQKDSFPQQYAVVEGFD 61
Query: 125 EYKTYWLSSPKAGYAGVGLYTK 146
Y T+ + GY+GVG Y K
Sbjct: 62 SYFTF--PKIRKGYSGVGFYVK 81
Score = 84 (34.6 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 32/110 (29%), Positives = 49/110 (44%)
Query: 192 DKRLEWDKLFH-------EHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFT-- 242
+ RLE+ + F+ E L+K + + +IL+GD+N+ PID A+ R +
Sbjct: 158 ENRLEYRRAFYKALRERIERLIK-EGNRKIILVGDVNILCNPIDTADQKDIIRESLIPSI 216
Query: 243 IEERDSFSSLLDKG----FTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+E R LL D R +P R G +T W+ T R N G
Sbjct: 217 MESRQWIRDLLLPSRLGLLLDIGRIQHPTRKGMFTCWNTRLNT-RPTNYG 265
>TAIR|locus:2135164 [details] [associations]
symbol:AT4G36050 species:3702 "Arabidopsis thaliana"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR004808 InterPro:IPR010666
Pfam:PF06839 PROSITE:PS51435 Pfam:PF03372 EMBL:CP002687
GO:GO:0008270 GO:GO:0006281 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748 KO:K10772
OMA:FIDSYRC IPI:IPI00517014 RefSeq:NP_974691.2 UniGene:At.22147
UniGene:At.74442 ProteinModelPortal:F4JNY0 SMR:F4JNY0 PRIDE:F4JNY0
EnsemblPlants:AT4G36050.2 GeneID:829761 KEGG:ath:AT4G36050
Uniprot:F4JNY0
Length = 610
Score = 94 (38.1 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 74 KIASWNVAGLRACVKKEG--LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
KI ++NV GLR V + L + DADI C QETK +L ++ + Y++++
Sbjct: 2 KIVTYNVNGLRQRVSQFDSLLKLLDSFDADIICFQETKLRRQELTADLAIA-DGYESFFS 60
Query: 132 ---SSPKA--GYAGVGLYTKVK 148
+S K GY+GV + +VK
Sbjct: 61 CTRTSEKGRTGYSGVATFCRVK 82
Score = 83 (34.3 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 27/78 (34%), Positives = 39/78 (50%)
Query: 214 VILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLL-DKG--FTDSFRHLYPKRTG 270
V ++GDLN++ +D + F R F SLL ++G F+D FR +P+R
Sbjct: 189 VFVVGDLNIAPFAMDRCEAGPDFEKNEF----RKWFRSLLVERGGSFSDVFRSKHPERKD 244
Query: 271 AYTYWSYMSKTARSRNTG 288
A+T WS S A N G
Sbjct: 245 AFTCWS-SSSGAEQFNYG 261
>UNIPROTKB|Q9UBZ4 [details] [associations]
symbol:APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0005743 "mitochondrial
inner membrane" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 GO:GO:0005743
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0007049 GO:GO:0006310 GO:GO:0004527 GO:GO:0090305
GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:27301
HOGENOM:HOG000231386 HOVERGEN:HBG054715 KO:K10772 OrthoDB:EOG4NS3BQ
EMBL:AB049211 EMBL:AJ011311 EMBL:AB021260 EMBL:AF119046
EMBL:AY884244 EMBL:AL020991 EMBL:BC002959 IPI:IPI00083281
RefSeq:NP_055296.2 UniGene:Hs.659558 ProteinModelPortal:Q9UBZ4
SMR:Q9UBZ4 IntAct:Q9UBZ4 MINT:MINT-1439290 STRING:Q9UBZ4
PhosphoSite:Q9UBZ4 DMDM:73921676 PeptideAtlas:Q9UBZ4 PRIDE:Q9UBZ4
DNASU:27301 Ensembl:ENST00000374987 GeneID:27301 KEGG:hsa:27301
UCSC:uc004dtz.3 GeneCards:GC0XP055043 HGNC:HGNC:17889 HPA:HPA030872
MIM:300773 neXtProt:NX_Q9UBZ4 PharmGKB:PA38474 InParanoid:Q9UBZ4
OMA:FIDSYRC PhylomeDB:Q9UBZ4 GenomeRNAi:27301 NextBio:50285
ArrayExpress:Q9UBZ4 Bgee:Q9UBZ4 CleanEx:HS_APEX2
Genevestigator:Q9UBZ4 GermOnline:ENSG00000169188 Uniprot:Q9UBZ4
Length = 518
Score = 90 (36.7 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 34/91 (37%), Positives = 44/91 (48%)
Query: 208 LDAEKPVILIGDLNVSHKPID---LANPTTNTRSAGFTIEERDSFSSLLD------KG-F 257
L A VI++GDLN +H+PID N G + DS S L G F
Sbjct: 186 LAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGR--KWMDSLLSNLGCQSASHVGPF 243
Query: 258 TDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
DS+R PK+ GA+T WS ++ AR N G
Sbjct: 244 IDSYRCFQPKQEGAFTCWSAVTG-ARHLNYG 273
Score = 85 (35.0 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 41/145 (28%), Positives = 61/145 (42%)
Query: 74 KIASWNVAGLR----ACVKKE-------GLDYIKKE-DADIFCLQETKCHETQLPPEVKM 121
++ SWN+ G+R +E + I E DADI CLQETK L + +
Sbjct: 3 RVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLAI 62
Query: 122 KFPEYKTYW-LSSPKAGYAGVGLYTK--VKPNKVTYGLG----TKNEHYGRNCNSNIVN- 173
Y +Y+ S ++GY+GV + K P GL T+N G C N+
Sbjct: 63 -VEGYNSYFSFSRNRSGYSGVATFCKDNATPVAAEEGLSGLFATQNGDVG--CYGNMDEF 119
Query: 174 TFYIRKNVPNAGAGLKTLDKRLEWD 198
T + + + G L T K W+
Sbjct: 120 TQEELRALDSEGRALLTQHKIRTWE 144
>TIGR_CMR|GSU_1539 [details] [associations]
symbol:GSU_1539 "exodeoxyribonuclease III" species:243231
"Geobacter sulfurreducens PCA" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0090305
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 OMA:EVNAKRW
ProtClustDB:PRK11756 RefSeq:NP_952590.1 HSSP:P09030
ProteinModelPortal:Q74CY2 SMR:Q74CY2 GeneID:2687378
KEGG:gsu:GSU1539 PATRIC:22025925
BioCyc:GSUL243231:GH27-1521-MONOMER Uniprot:Q74CY2
Length = 271
Score = 121 (47.7 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 58/226 (25%), Positives = 97/226 (42%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ S+NV GLR+ + + + ++ DI LQETK + P + Y
Sbjct: 2 KLVSFNVNGLRSRLHQLE-ELVRTHRPDIIGLQETKVQDADFPLAAVQALGYHVIY--HG 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGL-GTKNEHYGRNCNSNIVNTFYIRKNVP-NAGAGL--- 188
K + GV L + P V GL G +E R + TF + P G
Sbjct: 59 QKTHH-GVALLSLQPPRDVRLGLPGDGDEAQKRFIGA----TFDLPAGPPLRVINGYFPQ 113
Query: 189 -KTLDKRLEW---DKLFHEHLVKL----DAEKPVILIGDLNVSHKPIDLANPTTN----- 235
++ D +++ ++ + + L L D + P+ ++GD N++ D+ N
Sbjct: 114 GESRDHPVKFPAKERFYADVLAYLKSSCDPDAPLAVMGDFNIAPVDPDIGIGADNAKRWL 173
Query: 236 -TRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSK 280
T F EER F++L D G DS+R LYP ++++ Y S+
Sbjct: 174 RTGKTSFLPEERAWFAALRDWGLHDSYRELYPDIDDRFSWFDYRSR 219
>GENEDB_PFALCIPARUM|PFC0250c [details] [associations]
symbol:PFC0250c "AP endonuclease (DNA-(apurinic
or apyrimidinic site) lyase), putative" species:5833 "Plasmodium
falciparum" [GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase
activity" evidence=ISS] [GO:0020011 "apicoplast" evidence=ISS]
InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL844502
GO:GO:0020011 HSSP:P27695 RefSeq:XP_001351132.1
ProteinModelPortal:O97240 PRIDE:O97240
EnsemblProtists:PFC0250c:mRNA GeneID:814374 KEGG:pfa:PFC0250c
EuPathDB:PlasmoDB:PF3D7_0305600 KO:K01741 ProtClustDB:CLSZ2431892
Uniprot:O97240
Length = 617
Score = 104 (41.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 43/164 (26%), Positives = 71/164 (43%)
Query: 123 FPEYKTYWLSSPKAGYAGVGLYTK--VKPNKVTYGLGTKNE---HY--GRNCNSNIVNTF 175
F +Y Y+ S Y+G + K + + Y L +N H+ GR N F
Sbjct: 370 FKDYNAYF-SLANIKYSGQLVLVKKNIHIESIRYNLFFENNAHIHHDEGRVILVEFSNFF 428
Query: 176 YIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKL--DAEKPVILIGDLNVSHKPIDLANPT 233
+ PN G ++R +D+ + + L + +KP++ GDLN++ + IDL++P
Sbjct: 429 LLSTYTPNNGFDHVKFERRRLFDEQLQKFVTILRNEKQKPLVWTGDLNIAPEDIDLSHPA 488
Query: 234 TNTR------------SAGFTIEERDSFSSLLDKG-FTDSFRHL 264
R G T ER +F +L G DS+R+L
Sbjct: 489 EFRRMKKGNVPKEFIGQPGCTDFERKNFQKILTAGNLVDSYRYL 532
Score = 60 (26.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 18/82 (21%), Positives = 37/82 (45%)
Query: 33 KKTKSGSVENKATGPMNEKLSLNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKK--- 89
K+ +S + N+ + N+++ + CN KN + I +WN+ + K
Sbjct: 246 KRNRSVDIHNELS---NKRILTEDVVVKCNIKNDVKI-----IVTWNMNSITVRYKNKKK 297
Query: 90 --EGLDYIKKEDADIFCLQETK 109
E +++ +AD+ C QE +
Sbjct: 298 WDEFMNFFNNLNADVLCFQEVR 319
>UNIPROTKB|O97240 [details] [associations]
symbol:PFC0250c "AP endonuclease (DNA-[apurinic or
apyrimidinic site] lyase), putative" species:36329 "Plasmodium
falciparum 3D7" [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AL844502 GO:GO:0020011 HSSP:P27695
RefSeq:XP_001351132.1 ProteinModelPortal:O97240 PRIDE:O97240
EnsemblProtists:PFC0250c:mRNA GeneID:814374 KEGG:pfa:PFC0250c
EuPathDB:PlasmoDB:PF3D7_0305600 KO:K01741 ProtClustDB:CLSZ2431892
Uniprot:O97240
Length = 617
Score = 104 (41.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 43/164 (26%), Positives = 71/164 (43%)
Query: 123 FPEYKTYWLSSPKAGYAGVGLYTK--VKPNKVTYGLGTKNE---HY--GRNCNSNIVNTF 175
F +Y Y+ S Y+G + K + + Y L +N H+ GR N F
Sbjct: 370 FKDYNAYF-SLANIKYSGQLVLVKKNIHIESIRYNLFFENNAHIHHDEGRVILVEFSNFF 428
Query: 176 YIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKL--DAEKPVILIGDLNVSHKPIDLANPT 233
+ PN G ++R +D+ + + L + +KP++ GDLN++ + IDL++P
Sbjct: 429 LLSTYTPNNGFDHVKFERRRLFDEQLQKFVTILRNEKQKPLVWTGDLNIAPEDIDLSHPA 488
Query: 234 TNTR------------SAGFTIEERDSFSSLLDKG-FTDSFRHL 264
R G T ER +F +L G DS+R+L
Sbjct: 489 EFRRMKKGNVPKEFIGQPGCTDFERKNFQKILTAGNLVDSYRYL 532
Score = 60 (26.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 18/82 (21%), Positives = 37/82 (45%)
Query: 33 KKTKSGSVENKATGPMNEKLSLNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKK--- 89
K+ +S + N+ + N+++ + CN KN + I +WN+ + K
Sbjct: 246 KRNRSVDIHNELS---NKRILTEDVVVKCNIKNDVKI-----IVTWNMNSITVRYKNKKK 297
Query: 90 --EGLDYIKKEDADIFCLQETK 109
E +++ +AD+ C QE +
Sbjct: 298 WDEFMNFFNNLNADVLCFQEVR 319
>GENEDB_PFALCIPARUM|PF14_0285 [details] [associations]
symbol:PF14_0285 "exodeoxyribonuclease III,
putative" species:5833 "Plasmodium falciparum" [GO:0004536
"deoxyribonuclease activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] Pfam:PF03372 EMBL:AE014187
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004536 HSSP:P27695
RefSeq:XP_001348459.1 ProteinModelPortal:Q8ILF8
EnsemblProtists:PF14_0285:mRNA GeneID:811867 KEGG:pfa:PF14_0285
EuPathDB:PlasmoDB:PF3D7_1430600 HOGENOM:HOG000281251
ProtClustDB:CLSZ2501049 Uniprot:Q8ILF8
Length = 876
Score = 114 (45.2 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 32/94 (34%), Positives = 50/94 (53%)
Query: 75 IASWNVAGLR-AC--VKKEGLD---YIKKEDADIFCLQETKCHETQLPPEVKMKFPE--- 125
+ASWNV G + +C +K+ D ++KK D DI CLQETK +E+ + + + +
Sbjct: 6 LASWNVNGWKKSCEIIKRNDDDLVQFLKKLDIDILCLQETKTNESVIENDCNLLEADSNM 65
Query: 126 YKTYWLSSPKA-------GYAGVGLYTKVKPNKV 152
Y++YW K GY+G+ Y K NK+
Sbjct: 66 YESYWTCCKKKKGDKTHKGYSGLATYVK-NENKI 98
Score = 52 (23.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 213 PVILIGDLNVSHKPIDL 229
P+IL+GD N+S++ D+
Sbjct: 229 PIILLGDFNISYRNKDI 245
Score = 50 (22.7 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 17/72 (23%), Positives = 31/72 (43%)
Query: 219 DLNVS-HKPIDLANPTTNTRSAGFTIEERDSFSSLL-DKGFTDSFRHLYPKRTGAYTYWS 276
++N+S H +++AN S + D +L+ + D+F +P G +T W
Sbjct: 571 NINLSEHDLLNIANSIGEPSSPPCCV---DIIKNLIYEDNMIDTFSFFHPNVNGKFTCWD 627
Query: 277 YMSKTARSRNTG 288
+ R N G
Sbjct: 628 TY-RQCRVHNEG 638
Score = 38 (18.4 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 147 VKPNKVTYGLGT--KNEHYGRNCNSN 170
V NK + L + K++H+G N ++N
Sbjct: 374 VSNNKNDHPLSSTNKDDHHGNNHHNN 399
>UNIPROTKB|Q8ILF8 [details] [associations]
symbol:PF14_0285 "Exodeoxyribonuclease III, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004536
"deoxyribonuclease activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] Pfam:PF03372 EMBL:AE014187
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004536 HSSP:P27695
RefSeq:XP_001348459.1 ProteinModelPortal:Q8ILF8
EnsemblProtists:PF14_0285:mRNA GeneID:811867 KEGG:pfa:PF14_0285
EuPathDB:PlasmoDB:PF3D7_1430600 HOGENOM:HOG000281251
ProtClustDB:CLSZ2501049 Uniprot:Q8ILF8
Length = 876
Score = 114 (45.2 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 32/94 (34%), Positives = 50/94 (53%)
Query: 75 IASWNVAGLR-AC--VKKEGLD---YIKKEDADIFCLQETKCHETQLPPEVKMKFPE--- 125
+ASWNV G + +C +K+ D ++KK D DI CLQETK +E+ + + + +
Sbjct: 6 LASWNVNGWKKSCEIIKRNDDDLVQFLKKLDIDILCLQETKTNESVIENDCNLLEADSNM 65
Query: 126 YKTYWLSSPKA-------GYAGVGLYTKVKPNKV 152
Y++YW K GY+G+ Y K NK+
Sbjct: 66 YESYWTCCKKKKGDKTHKGYSGLATYVK-NENKI 98
Score = 52 (23.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 213 PVILIGDLNVSHKPIDL 229
P+IL+GD N+S++ D+
Sbjct: 229 PIILLGDFNISYRNKDI 245
Score = 50 (22.7 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 17/72 (23%), Positives = 31/72 (43%)
Query: 219 DLNVS-HKPIDLANPTTNTRSAGFTIEERDSFSSLL-DKGFTDSFRHLYPKRTGAYTYWS 276
++N+S H +++AN S + D +L+ + D+F +P G +T W
Sbjct: 571 NINLSEHDLLNIANSIGEPSSPPCCV---DIIKNLIYEDNMIDTFSFFHPNVNGKFTCWD 627
Query: 277 YMSKTARSRNTG 288
+ R N G
Sbjct: 628 TY-RQCRVHNEG 638
Score = 38 (18.4 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 147 VKPNKVTYGLGT--KNEHYGRNCNSN 170
V NK + L + K++H+G N ++N
Sbjct: 374 VSNNKNDHPLSSTNKDDHHGNNHHNN 399
>TIGR_CMR|APH_0505 [details] [associations]
symbol:APH_0505 "exodeoxyribonuclease III" species:212042
"Anaplasma phagocytophilum HZ" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0006281 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 GO:GO:0008853
RefSeq:YP_505100.1 ProteinModelPortal:Q2GKK1 STRING:Q2GKK1
GeneID:3931256 KEGG:aph:APH_0505 PATRIC:20949650 OMA:DVQIGIP
ProtClustDB:CLSK747329 BioCyc:APHA212042:GHPM-529-MONOMER
Uniprot:Q2GKK1
Length = 273
Score = 115 (45.5 bits), Expect = 0.00019, P = 0.00019
Identities = 52/220 (23%), Positives = 89/220 (40%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
++ +WNV +R ++ + + D+ LQE KC Q P V+++ YK Y
Sbjct: 3 RVITWNVNSIRKRIEHL-CSVLSEHSIDVAMLQEIKCTNEQFP-FVELEALGYKCYVHGQ 60
Query: 134 P-KAGYAGVGL--------YTKVKPNKVTYGLGTKNEHYGR--NCNSNIVNTFYIRK--- 179
+ G A + Y+ + K G+ + R C IR
Sbjct: 61 KSRNGVAIISKLPVVEVVSYSVLDEGKELESAGSYSSEESRYIECTLECTGNKKIRVVSV 120
Query: 180 NVPNAG-AGLKTLDKRLEWDKLFHEHLVKL-DAEKPVILIGDLNVSHKPIDLANPTTNTR 237
VPN +T +L++ + + L+ + E +I GD NV+ + ID+ +P
Sbjct: 121 YVPNGQEVESETFFYKLKFLEHLKDRLLNIMKTEDFLIAGGDFNVAPEEIDVHDPKALDG 180
Query: 238 SAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSY 277
F I ER F +L+ G D FR +++W+Y
Sbjct: 181 RLCFHILERAKFREILNNGIVDIFRTFVGIDRKEFSWWNY 220
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.133 0.404 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 295 269 0.00096 114 3 11 23 0.40 34
32 0.39 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 56
No. of states in DFA: 607 (65 KB)
Total size of DFA: 225 KB (2124 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.99u 0.10s 23.09t Elapsed: 00:00:01
Total cpu time: 23.00u 0.10s 23.10t Elapsed: 00:00:01
Start: Thu Aug 15 13:25:36 2013 End: Thu Aug 15 13:25:37 2013