RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6130
(295 letters)
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 275
Score = 128 bits (321), Expect = 6e-36
Identities = 104/230 (45%), Positives = 140/230 (60%), Gaps = 4/230 (1%)
Query: 62 NKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKM 121
K + G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++
Sbjct: 8 QKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQE 67
Query: 122 -KFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHY-GRNCNSNIVNTFYIRK 179
++ + S K GY+GVGL ++ P KV+YG+G + GR + + +
Sbjct: 68 LPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTA 127
Query: 180 NVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSA 239
VPNAG GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++A
Sbjct: 128 YVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNA 187
Query: 240 GFTIEERDSF-SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
GFT +ER F L DSFRHLYP AYT+W+YM ARS+N G
Sbjct: 188 GFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMN-ARSKNVG 236
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III
{Escherichia coli [TaxId: 562]}
Length = 268
Score = 118 bits (295), Expect = 2e-32
Identities = 55/229 (24%), Positives = 91/229 (39%), Gaps = 19/229 (8%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K S+N+ GLRA + ++K D+ LQETK H+ P E +
Sbjct: 2 KFVSFNINGLRARPHQ-LEAIVEKHQPDVIGLQETKVHDDMFPLEE---VAKLGYNVFYH 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNV-------PNAGA 186
+ G+ GV L TK P V G +E R + + V +
Sbjct: 58 GQKGHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRD 117
Query: 187 GLKTLDKRLEWDKLFHEHLVK-LDAEKPVILIGDLNVSHKPIDLANPTTNTRSA------ 239
+ ++ + +L L + PV+++GD+N+S +D+ N +
Sbjct: 118 HPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKC 177
Query: 240 GFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
F EER+ L+ G D+FRH P+ ++++ Y SK N G
Sbjct: 178 SFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSK-GFDDNRG 225
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 92.4 bits (228), Expect = 8e-23
Identities = 26/234 (11%), Positives = 54/234 (23%), Gaps = 56/234 (23%)
Query: 72 NFKIASWNVAGLRACVKKEGLD-----YIKKEDADIFCLQETKCHETQLPPEVKMK---- 122
+F++A+WN+ G A + + + DI +QE + ++
Sbjct: 4 DFRVATWNLQGASATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPG 63
Query: 123 ----------------FPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRN 166
Y + G + L + + ++V +
Sbjct: 64 IPVRELIWNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEVFVLSPVRQGGRPLL 123
Query: 167 CNSNIVNTFYIRKNV--PNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSH 224
+ F+ E F + + +++GD N
Sbjct: 124 GIRIGNDAFF---TAHAIAMR-NNDAPALVEEVYNFFRDSRDPVHQALNWMILGDFN--- 176
Query: 225 KPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYM 278
E L + + P A T S
Sbjct: 177 -------------------REPADLEMNLTVPVRRASEIISP---AAATQTSQR 208
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse
transcriptase homolog {Human (Homo sapiens) [TaxId:
9606]}
Length = 236
Score = 84.8 bits (208), Expect = 4e-20
Identities = 36/215 (16%), Positives = 73/215 (33%), Gaps = 18/215 (8%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGL-DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY 126
G + I + N+ GL + +K+ L +IK +D + C+QET ++K +
Sbjct: 1 GSNSHITILTLNINGLNSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTH---RLKIKGW 57
Query: 127 KTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGA 186
+ + ++ K AGV + K + + E + +I N+
Sbjct: 58 RKIYQANGKQKKAGVAILVSDKTDFKPTKIKRDKEGHYIMVKGSIQQEELTILNIYAPNT 117
Query: 187 GLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEER 246
G K++ D +++GD N +D + +
Sbjct: 118 GAPRFIKQVLSDLQRDLD-------SHTLIMGDFNTPLSTLDRSTRQKVNKDTQE----- 165
Query: 247 DSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKT 281
+S L + ++ YT++S T
Sbjct: 166 --LNSALHQADLIDIYRTLHPKSTEYTFFSAPHHT 198
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex
lectularius) [TaxId: 79782]}
Length = 280
Score = 78.1 bits (191), Expect = 2e-17
Identities = 26/232 (11%), Positives = 43/232 (18%), Gaps = 23/232 (9%)
Query: 74 KIASWNVAGLRACVK-KEGLDYIKKEDADI--FCLQETKCHETQLPPEVK-----MKFPE 125
SWN RA +E L E D+ +Q +
Sbjct: 8 HTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLT 67
Query: 126 YKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPN-- 183
K Y +GL + + + N
Sbjct: 68 SKGYTKLKNTI-TETMGLTVYCLEKHLDQNTLKNETIIVTVDDQKKSGGIVTSFTIYNKR 126
Query: 184 -------AGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNT 236
T ++ K D + IGDLNV + +
Sbjct: 127 FSFTTSRMSDEDVTSTNTKYAYDTRLDYSKKDDPSDFLFWIGDLNVRVETNATHAKSLVD 186
Query: 237 RSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
++ + D F +
Sbjct: 187 QNNIDGLMAFDQLKKA---KEQKLFDGWTEP-QVTFKPTYKFKP-NTDEYDL 233
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B
{Haemophilus ducreyi [TaxId: 730]}
Length = 261
Score = 77.6 bits (189), Expect = 3e-17
Identities = 25/233 (10%), Positives = 58/233 (24%), Gaps = 49/233 (21%)
Query: 72 NFKIASWNVAGLRACVKKE-----GLDYIKKEDADIFCLQETKCHETQLPPEVKMK---- 122
+FK+A+WN+ G A + + ++ ADI +QE + ++
Sbjct: 4 DFKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGG 63
Query: 123 ----------------FPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRN 166
Y Y A + + ++ + ++ + R
Sbjct: 64 TPIEEYTWNLGTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQADEAFIVHSDSSVLQSRP 123
Query: 167 CNSNIVNTFYIRKN-VPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHK 225
+ T G R + +++GD N +
Sbjct: 124 AVGIRIGTDVFFTVHALATGGSDAVSLIRNIFTTFNSSSSPPERRVYSWMVVGDFNRAPA 183
Query: 226 PIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYM 278
+ + +++ + P T+ S
Sbjct: 184 --------------------NLEVALRQEPAVSENTIIIAP---TEPTHRSGN 213
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon
(ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]}
Length = 228
Score = 64.7 bits (156), Expect = 5e-13
Identities = 21/223 (9%), Positives = 46/223 (20%), Gaps = 40/223 (17%)
Query: 71 PNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYW 130
P +++ N+ + E A I +QE + F + +
Sbjct: 1 PPYRVLQANLQRKKL-ATAELAIEAATRKAAIALIQEPYVGGAKSMKG----FRGVRVFQ 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHY------GRNCNSNIVNTFYIRKNVPNA 184
++ G + V + R +V+ ++
Sbjct: 56 STAQGDGTVKAAIAVFDHDLDVIQYPQLTTNNIVVVGIRTRAWEITLVSYYFEPDKPI-- 113
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
E + + + K +I GD N
Sbjct: 114 -----------ESYLEQIKRVERKMGPKRLIFGGDANAKSTWWGSKEDDARGD------- 155
Query: 245 ERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNT 287
G T+ + R ++
Sbjct: 156 --------QLMGTLGELGLHILNEGDVPTFDTIRGG-KRYQSR 189
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus)
[TaxId: 9913]}
Length = 260
Score = 58.1 bits (138), Expect = 1e-10
Identities = 26/230 (11%), Positives = 56/230 (24%), Gaps = 23/230 (10%)
Query: 74 KIASWNV--AGLRACVKKEGLDYIKK--EDADIFCLQETKCHETQLPPEV---KMKFPEY 126
KIA++N+ G YI + DI +QE + ++ +
Sbjct: 2 KIAAFNIRTFGETKMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPN 61
Query: 127 KTYWLSSPKAGYAGVGLY--------------TKVKPNKVTYGLGTKNEHYGRNCNSNIV 172
+++ S G T + +
Sbjct: 62 TYHYVVSEPLGRNSYKERYLFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSH 121
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLN--VSHKPIDLA 230
+T + + + + + + V+L+GD N S+
Sbjct: 122 STKVKEFAIVALHSAPSDAVAEINSLYDVYLDVQQKWHLNDVMLMGDFNADCSYVTSSQW 181
Query: 231 NPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSK 280
+ S+ F DS + R + + +
Sbjct: 182 SSIRLRTSSTFQWLIPDSADTTATSTNCAYDRIVVAGSLLQSSVVPGSAA 231
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C
{Bacillus cereus [TaxId: 1396]}
Length = 299
Score = 53.1 bits (125), Expect = 1e-08
Identities = 29/247 (11%), Positives = 64/247 (25%), Gaps = 40/247 (16%)
Query: 72 NFKIASWNVAGLRACVKKEG---------LDYIKKEDADIFCLQE--TKCHETQLPPEVK 120
K+ + NV L + ++ D+ L E +L +K
Sbjct: 3 TLKVMTHNVYMLSTNLYPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLK 62
Query: 121 MKFP--------------EYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRN 166
++P + SS GV + +K + + K
Sbjct: 63 KEYPNQTAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFAKGCGPDNL 122
Query: 167 CNS--------------NIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEK 212
N +++ T ++ ++ + + +
Sbjct: 123 SNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKNIPNNE 182
Query: 213 PVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLD-KGFTDSFRHLYPKRTGA 271
V++ GD+NV+ + N + S++ T + Y
Sbjct: 183 YVLIGGDMNVNKINAENNNDSEYASMFKTLNASVPSYTGHTATWDATTNSIAKYNFPDSP 242
Query: 272 YTYWSYM 278
Y Y+
Sbjct: 243 AEYLDYI 249
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C
{Listeria ivanovii [TaxId: 1638]}
Length = 293
Score = 50.3 bits (118), Expect = 8e-08
Identities = 27/245 (11%), Positives = 62/245 (25%), Gaps = 41/245 (16%)
Query: 72 NFKIASWNVAGLRACVKKEG---------LDYIKKEDADIFCLQE--TKCHETQLPPEVK 120
NFKI S NV + ++ D+ L E +L ++
Sbjct: 4 NFKITSHNVYLFSRNIYPNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLR 63
Query: 121 MKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTKN-------------------- 160
+P S G Y+ + ++
Sbjct: 64 EMYPHQTPVIGRSKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEKSQHIFQRGGGADRLS 123
Query: 161 -------EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKP 213
+ +I+ T + + + + + + ++
Sbjct: 124 NKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNIPKDEI 183
Query: 214 VILIGDLNVSH--KPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGA 271
+ + GDLNV++ N S + ++ + +S+ P+
Sbjct: 184 IFIGGDLNVNYGTDEYHDMLKLLNVSSPANFNGQMATWDPTTNSMLKESYPKAAPEYLD- 242
Query: 272 YTYWS 276
Y +
Sbjct: 243 YIFVE 247
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 345
Score = 44.4 bits (104), Expect = 7e-06
Identities = 42/268 (15%), Positives = 72/268 (26%), Gaps = 44/268 (16%)
Query: 48 MNEKLSLNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVK-KEGLDYIKKEDADI--FC 104
+N +L + ++S +K K+ +AS+N+ G A K + L ADI
Sbjct: 8 VNHELRKRENEFSEHKNVKI------FVASYNLNGCSATTKLENWLFPENTPLADIYVVG 61
Query: 105 LQETKC-------------------HETQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYT 145
QE +L P Y L S + + ++
Sbjct: 62 FQEIVQLTPQQVISADPAKRREWESCVKRLLNGKCTSGPGY--VQLRSGQLVGTALMIFC 119
Query: 146 K---------VKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLE 196
K V+ GLG + + G + + AG D+R
Sbjct: 120 KESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTNYDERDH 179
Query: 197 -----WDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
L + V+ GD N + + E D +
Sbjct: 180 DYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNK 239
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMS 279
+ G F P + +
Sbjct: 240 QMLTGKVFPFFSELPITFPPTYKFDIGT 267
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine
methyltransferase {Red algae (Galdieria sulphuraria)
[TaxId: 130081]}
Length = 282
Score = 26.7 bits (57), Expect = 3.2
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 115 LPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKV 152
PE + +W+ +AG G K +K+
Sbjct: 245 CSPEFQANMKRGLEHWIEGGRAGKLTWGGMLFRKSDKI 282
>d1txka2 b.30.5.9 (A:23-396) Glucans biosynthesis protein G (MdoG,
OpgG), N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 374
Score = 25.8 bits (57), Expect = 6.5
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 123 FPEYKTYWLSSPKAGYAGVGLYTKVKPNKVT--YGLGTKNEHYGRNCNSNIVNTFYIRKN 180
FP +K +W+ PK + +Y + + T Y GR+ ++ + Y+R
Sbjct: 163 FPRFKEFWIERPKPTDKRLTIYALLDSPRATGAYKFVV---MPGRDTVVDVQSKIYLRDK 219
Query: 181 VPNAG 185
V G
Sbjct: 220 VGKLG 224
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.130 0.388
Gapped
Lambda K H
0.267 0.0382 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,068,180
Number of extensions: 48629
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 16
Length of query: 295
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,240,546
Effective search space: 260514660
Effective search space used: 260514660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.7 bits)