BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6131
(225 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6N021|TET2_HUMAN Methylcytosine dioxygenase TET2 OS=Homo sapiens GN=TET2 PE=1 SV=3
Length = 2002
Score = 315 bits (806), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 141/226 (62%), Positives = 175/226 (77%), Gaps = 2/226 (0%)
Query: 1 ILYTGKEGKTTQGCPLAKWVIRRASLEEKLLLIVKHRQGHTCSTAWIVVVIVAWEGVPLN 60
++YTGKEGK++QGCP+AKWV+RR+S EEKLL +V+ R GHTC A IV++I+ WEG+PL+
Sbjct: 1180 VIYTGKEGKSSQGCPIAKWVVRRSSSEEKLLCLVRERAGHTCEAAVIVILILVWEGIPLS 1239
Query: 61 QSDGVYAILTNKLNKYGLPTTRRCATNEPRTCACQGLDPDTCGASFSFGCSWSMYYNGCK 120
+D +Y+ LT L KYG T RRCA NE RTCACQGLDP+TCGASFSFGCSWSMYYNGCK
Sbjct: 1240 LADKLYSELTETLRKYGTLTNRRCALNEERTCACQGLDPETCGASFSFGCSWSMYYNGCK 1299
Query: 121 YARSKTVRKFRL--SVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQCQFEREASECR 178
+ARSK RKF+L EE+++E + L+T ++P YK LAP A+ NQ ++E A ECR
Sbjct: 1300 FARSKIPRKFKLLGDDPKEEEKLESHLQNLSTLMAPTYKKLAPDAYNNQIEYEHRAPECR 1359
Query: 179 LGFKPGRPFSGVTACFDFCAHSHRDLHNMNNGCTVSVVLSNPDSLE 224
LG K GRPFSGVTAC DFCAH+HRDLHNM NG T+ L+ D+ E
Sbjct: 1360 LGLKEGRPFSGVTACLDFCAHAHRDLHNMQNGSTLVCTLTREDNRE 1405
>sp|Q8BG87|TET3_MOUSE Methylcytosine dioxygenase TET3 OS=Mus musculus GN=Tet3 PE=1 SV=3
Length = 1668
Score = 302 bits (774), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 139/224 (62%), Positives = 172/224 (76%), Gaps = 2/224 (0%)
Query: 1 ILYTGKEGKTTQGCPLAKWVIRRASLEEKLLLIVKHRQGHTCSTAWIVVVIVAWEGVPLN 60
++YTGKEGK+++GCP+AKWVIRR +LEEKLL +V+HR GH C A IV++I+AWEG+P +
Sbjct: 748 VIYTGKEGKSSRGCPIAKWVIRRHTLEEKLLCLVRHRAGHHCQNAVIVILILAWEGIPRS 807
Query: 61 QSDGVYAILTNKLNKYGLPTTRRCATNEPRTCACQGLDPDTCGASFSFGCSWSMYYNGCK 120
D +Y LT+ L KYG PT+RRC N+ RTCACQG DP+TCGASFSFGCSWSMY+NGCK
Sbjct: 808 LGDTLYQELTDTLRKYGNPTSRRCGLNDDRTCACQGKDPNTCGASFSFGCSWSMYFNGCK 867
Query: 121 YARSKTVRKFRLSVRS--EEQEIEEKMHLLATTISPLYKALAPGAFTNQCQFEREASECR 178
YARSKT RKFRL+ + EE+ + LAT ++PLYK LAP A+ NQ E A +CR
Sbjct: 868 YARSKTPRKFRLTGDNPKEEEVLRNSFQDLATEVAPLYKRLAPQAYQNQVTNEDVAIDCR 927
Query: 179 LGFKPGRPFSGVTACFDFCAHSHRDLHNMNNGCTVSVVLSNPDS 222
LG K GRPFSGVTAC DFCAH+H+D HN+ NGCTV L+ D+
Sbjct: 928 LGLKEGRPFSGVTACMDFCAHAHKDQHNLYNGCTVVCTLTKEDN 971
>sp|O43151|TET3_HUMAN Methylcytosine dioxygenase TET3 OS=Homo sapiens GN=TET3 PE=2 SV=3
Length = 1660
Score = 301 bits (772), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 138/224 (61%), Positives = 173/224 (77%), Gaps = 2/224 (0%)
Query: 1 ILYTGKEGKTTQGCPLAKWVIRRASLEEKLLLIVKHRQGHTCSTAWIVVVIVAWEGVPLN 60
++YTGKEGK+++GCP+AKWVIRR +LEEKLL +V+HR GH C A IV++I+AWEG+P +
Sbjct: 740 VIYTGKEGKSSRGCPIAKWVIRRHTLEEKLLCLVRHRAGHHCQNAVIVILILAWEGIPRS 799
Query: 61 QSDGVYAILTNKLNKYGLPTTRRCATNEPRTCACQGLDPDTCGASFSFGCSWSMYYNGCK 120
D +Y LT+ L KYG PT+RRC N+ RTCACQG DP+TCGASFSFGCSWSMY+NGCK
Sbjct: 800 LGDTLYQELTDTLRKYGNPTSRRCGLNDDRTCACQGKDPNTCGASFSFGCSWSMYFNGCK 859
Query: 121 YARSKTVRKFRLSVRS--EEQEIEEKMHLLATTISPLYKALAPGAFTNQCQFEREASECR 178
YARSKT RKFRL+ + EE+ + + LAT ++PLYK LAP A+ NQ E A +CR
Sbjct: 860 YARSKTPRKFRLAGDNPKEEEVLRKSFQDLATEVAPLYKRLAPQAYQNQVTNEEIAIDCR 919
Query: 179 LGFKPGRPFSGVTACFDFCAHSHRDLHNMNNGCTVSVVLSNPDS 222
LG K GRPF+GVTAC DFCAH+H+D HN+ NGCTV L+ D+
Sbjct: 920 LGLKEGRPFAGVTACMDFCAHAHKDQHNLYNGCTVVCTLTKEDN 963
>sp|Q8NFU7|TET1_HUMAN Methylcytosine dioxygenase TET1 OS=Homo sapiens GN=TET1 PE=1 SV=2
Length = 2136
Score = 293 bits (751), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 131/225 (58%), Positives = 168/225 (74%), Gaps = 3/225 (1%)
Query: 1 ILYTGKEGKTTQGCPLAKWVIRRASLEEKLLLIVKHRQGHTCSTAWIVVVIVAWEGVPLN 60
++YTGKEGK++ GCP+AKWV+RR+S EEK+L +V+ R GH C TA +VV+I+ W+G+PL
Sbjct: 1469 VVYTGKEGKSSHGCPIAKWVLRRSSDEEKVLCLVRQRTGHHCPTAVMVVLIMVWDGIPLP 1528
Query: 61 QSDGVYAILTNKLNKY-GLPTTRRCATNEPRTCACQGLDPDTCGASFSFGCSWSMYYNGC 119
+D +Y LT L Y G PT RRC NE RTC CQG+DP+TCGASFSFGCSWSMY+NGC
Sbjct: 1529 MADRLYTELTENLKSYNGHPTDRRCTLNENRTCTCQGIDPETCGASFSFGCSWSMYFNGC 1588
Query: 120 KYARSKTVRKFRLSVRS--EEQEIEEKMHLLATTISPLYKALAPGAFTNQCQFEREASEC 177
K+ RS + R+FR+ S E+ +E+ + LAT ++P+YK AP A+ NQ ++E A EC
Sbjct: 1589 KFGRSPSPRRFRIDPSSPLHEKNLEDNLQSLATRLAPIYKQYAPVAYQNQVEYENVAREC 1648
Query: 178 RLGFKPGRPFSGVTACFDFCAHSHRDLHNMNNGCTVSVVLSNPDS 222
RLG K GRPFSGVTAC DFCAH HRD+HNMNNG TV L+ D+
Sbjct: 1649 RLGSKEGRPFSGVTACLDFCAHPHRDIHNMNNGSTVVCTLTREDN 1693
>sp|Q3URK3|TET1_MOUSE Methylcytosine dioxygenase TET1 OS=Mus musculus GN=Tet1 PE=1 SV=2
Length = 2007
Score = 283 bits (723), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 129/220 (58%), Positives = 165/220 (75%), Gaps = 3/220 (1%)
Query: 1 ILYTGKEGKTTQGCPLAKWVIRRASLEEKLLLIVKHRQGHTCSTAWIVVVIVAWEGVPLN 60
I++TGKEGK++QGCP+AKWVIRR+ EEKL+ +V+ R H CSTA IVV+I+ WEG+P
Sbjct: 1417 IVFTGKEGKSSQGCPVAKWVIRRSGPEEKLICLVRERVDHHCSTAVIVVLILLWEGIPRL 1476
Query: 61 QSDGVYAILTNKLNKY-GLPTTRRCATNEPRTCACQGLDPDTCGASFSFGCSWSMYYNGC 119
+D +Y LT L Y G PT RRC N+ RTC CQG+DP TCGASFSFGCSWSMY+NGC
Sbjct: 1477 MADRLYKELTENLRSYSGHPTDRRCTLNKKRTCTCQGIDPKTCGASFSFGCSWSMYFNGC 1536
Query: 120 KYARSKTVRKFRLSVRS--EEQEIEEKMHLLATTISPLYKALAPGAFTNQCQFEREASEC 177
K+ RS+ RKFRL+ E+++E+ + LAT ++PLYK +AP A+ NQ ++E A +C
Sbjct: 1537 KFGRSENPRKFRLAPNYPLHEKQLEKNLQELATVLAPLYKQMAPVAYQNQVEYEEVAGDC 1596
Query: 178 RLGFKPGRPFSGVTACFDFCAHSHRDLHNMNNGCTVSVVL 217
RLG + GRPFSGVT C DFCAHSH+D+HNM+NG TV L
Sbjct: 1597 RLGNEEGRPFSGVTCCMDFCAHSHKDIHNMHNGSTVVCTL 1636
>sp|Q4JK59|TET2_MOUSE Methylcytosine dioxygenase TET2 OS=Mus musculus GN=Tet2 PE=1 SV=3
Length = 1912
Score = 281 bits (719), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 132/226 (58%), Positives = 166/226 (73%), Gaps = 2/226 (0%)
Query: 1 ILYTGKEGKTTQGCPLAKWVIRRASLEEKLLLIVKHRQGHTCSTAWIVVVIVAWEGVPLN 60
++YTGKEGK++QGCP+AKWV RR+S EEKLL +V+ R HTC TA +V+ I+ W+G+P
Sbjct: 1093 VIYTGKEGKSSQGCPIAKWVYRRSSEEEKLLCLVRVRPNHTCETAVMVIAIMLWDGIPKL 1152
Query: 61 QSDGVYAILTNKLNKYGLPTTRRCATNEPRTCACQGLDPDTCGASFSFGCSWSMYYNGCK 120
+ +Y+ LT+ L K G+ T RRC+ NE R C CQG +P+TCGASFSFGCSWSMYYNGCK
Sbjct: 1153 LASELYSELTDILGKCGICTNRRCSQNETRNCCCQGENPETCGASFSFGCSWSMYYNGCK 1212
Query: 121 YARSKTVRKFRL--SVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQCQFEREASECR 178
+ARSK RKFRL + EE+ + + LAT I+P+YK LAP A+ NQ +FE +A +C
Sbjct: 1213 FARSKKPRKFRLHGAEPKEEERLGSHLQNLATVIAPIYKKLAPDAYNNQVEFEHQAPDCC 1272
Query: 179 LGFKPGRPFSGVTACFDFCAHSHRDLHNMNNGCTVSVVLSNPDSLE 224
LG K GRPFSGVTAC DF AHSHRD NM NG TV V L+ D+ E
Sbjct: 1273 LGLKEGRPFSGVTACLDFSAHSHRDQQNMPNGSTVVVTLNREDNRE 1318
>sp|Q38ZH8|GPMA1_LACSS 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 1
OS=Lactobacillus sakei subsp. sakei (strain 23K)
GN=gpmA1 PE=3 SV=1
Length = 235
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 38/107 (35%), Gaps = 4/107 (3%)
Query: 68 ILTNKLNKYGLPTTRRCATNEPRTCACQGLDPDTCGASFSFG--CSWSMYYNGCK--YAR 123
I+ +L++ LP T+ NE A +GL+ DT F W Y R
Sbjct: 67 IVLEELDQLALPMTKSWRLNERHYGALRGLNKDTTRTIFGVHQVARWRRSYTALPPLLIR 126
Query: 124 SKTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQCQF 170
S T R++RL R E + + PG Q Q
Sbjct: 127 SSTARRYRLVPRKSRPRGESLAQATQRLLPYWQDQVVPGLLAGQDQL 173
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,265,218
Number of Sequences: 539616
Number of extensions: 3253459
Number of successful extensions: 5632
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5618
Number of HSP's gapped (non-prelim): 8
length of query: 225
length of database: 191,569,459
effective HSP length: 113
effective length of query: 112
effective length of database: 130,592,851
effective search space: 14626399312
effective search space used: 14626399312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)