Query psy6131
Match_columns 225
No_of_seqs 52 out of 54
Neff 2.5
Searched_HMMs 46136
Date Fri Aug 16 18:25:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6131.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6131hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12851 Tet_JBP: Oxygenase do 100.0 7.3E-43 1.6E-47 286.6 7.1 109 111-221 1-110 (171)
2 PTZ00397 macrophage migration 65.4 7 0.00015 29.9 2.9 38 45-82 57-95 (116)
3 PRK00745 4-oxalocrotonate taut 49.0 15 0.00033 24.8 2.1 33 48-80 3-36 (62)
4 PRK09271 flavodoxin; Provision 44.8 42 0.00091 26.9 4.4 22 53-74 62-83 (160)
5 PRK01964 4-oxalocrotonate taut 42.1 23 0.00051 24.3 2.2 34 48-81 3-37 (64)
6 cd07404 MPP_MS158 Microscilla 38.9 13 0.00028 29.0 0.6 26 189-216 137-162 (166)
7 PRK05800 cobU adenosylcobinami 38.5 30 0.00066 28.5 2.7 36 41-76 115-150 (170)
8 cd00491 4Oxalocrotonate_Tautom 37.1 30 0.00065 22.7 2.1 34 48-81 2-36 (58)
9 PRK05708 2-dehydropantoate 2-r 37.0 29 0.00063 30.7 2.5 26 56-81 280-305 (305)
10 PRK01066 porphobilinogen deami 35.9 28 0.00061 31.5 2.3 28 194-222 87-114 (231)
11 COG1490 Dtd D-Tyr-tRNAtyr deac 33.6 26 0.00057 30.1 1.6 27 55-81 95-121 (145)
12 PF13811 DUF4186: Domain of un 27.9 36 0.00077 28.1 1.5 44 120-166 7-54 (111)
13 PRK15124 2'-5' RNA ligase; Pro 27.3 50 0.0011 26.9 2.2 31 52-82 87-119 (176)
14 PRK05610 rpsQ 30S ribosomal pr 26.8 13 0.00028 28.6 -1.2 34 153-188 32-69 (84)
15 COG0563 Adk Adenylate kinase a 25.5 71 0.0015 26.7 2.9 27 51-79 80-106 (178)
16 cd02148 Nitroreductase_5 Nitro 25.4 50 0.0011 26.7 1.9 22 125-147 10-31 (185)
17 COG4050 Uncharacterized protei 24.8 98 0.0021 26.6 3.6 52 102-153 92-145 (152)
18 PF09885 DUF2112: Uncharacteri 23.7 84 0.0018 27.1 3.0 44 103-152 89-140 (143)
19 cd07402 MPP_GpdQ Enterobacter 23.5 32 0.0007 28.0 0.5 21 196-216 187-207 (240)
20 cd02136 Nitroreductase Nitrore 23.4 54 0.0012 25.8 1.7 23 124-147 8-30 (178)
21 PRK14980 DNA-directed RNA poly 23.3 49 0.0011 28.0 1.5 20 194-213 69-88 (127)
22 cd03157 TM4SF12_like_LEL Tetra 23.1 2E+02 0.0044 22.1 4.8 19 60-78 7-25 (103)
23 PF11574 DUF3235: Protein of u 22.8 60 0.0013 25.9 1.8 18 62-79 42-59 (91)
24 PF14268 YoaP: YoaP-like 22.6 49 0.0011 23.1 1.1 9 111-119 22-30 (44)
25 PTZ00250 variable surface prot 21.7 93 0.002 29.6 3.2 35 131-165 313-348 (350)
26 KOG4300|consensus 21.6 57 0.0012 30.2 1.7 16 202-217 136-153 (252)
27 COG0648 Nfo Endonuclease IV [D 21.6 29 0.00063 32.0 -0.1 14 188-202 168-181 (280)
28 TIGR00013 taut 4-oxalocrotonat 21.6 81 0.0018 21.2 2.1 33 49-81 3-37 (63)
29 cd02138 Nitroreductase_2 Nitro 21.6 70 0.0015 25.8 2.1 22 124-146 12-33 (181)
30 COG5450 Transcription regulato 21.6 58 0.0013 25.6 1.5 33 50-82 7-39 (84)
31 PF15251 DUF4588: Domain of un 21.6 98 0.0021 27.8 3.1 30 137-166 25-57 (232)
32 COG2154 Pterin-4a-carbinolamin 21.4 47 0.001 26.7 1.0 20 200-221 58-77 (101)
33 cd02144 iodotyrosine_dehalogen 21.1 69 0.0015 25.4 1.9 21 126-147 10-30 (193)
34 PF14459 Prok-E2_C: Prokaryoti 20.9 71 0.0015 27.0 2.0 21 134-154 35-55 (131)
35 TIGR00212 hemC porphobilinogen 20.8 79 0.0017 29.4 2.5 29 194-222 70-99 (292)
36 PRK00072 hemC porphobilinogen 20.6 83 0.0018 29.3 2.5 29 194-222 74-103 (295)
37 PRK02220 4-oxalocrotonate taut 20.3 89 0.0019 20.9 2.1 32 48-79 3-35 (61)
No 1
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=100.00 E-value=7.3e-43 Score=286.62 Aligned_cols=109 Identities=50% Similarity=0.898 Sum_probs=105.8
Q ss_pred eeeeeecCceecc-ccccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhchhhhhccCCccccCCcCCCCcce
Q psy6131 111 SWSMYYNGCKYAR-SKTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQCQFEREASECRLGFKPGRPFSG 189 (225)
Q Consensus 111 sWsmY~nGcKfar-Sk~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQv~~E~~a~dCRLG~k~gRPFSG 189 (225)
|||||||||||+| |+.||||+++.+..+ +|++||.|||.|+||||++||++|+||+++++.+.+|||+...|+||||
T Consensus 1 ~~~~y~~~~~~~r~~~~~rk~~~~~~~~~--~~~~l~~la~~l~~iy~~~~P~~y~~~~~~~~~~~~~~~~~~~~~pFs~ 78 (171)
T PF12851_consen 1 SWSMYFNGCKFPRGSKKPRKFRLTPENPK--LEENLQELATVLGPIYKQIAPDLYENQVEVEESLGDCRLGPIWGRPFSG 78 (171)
T ss_pred CeeEEeCCCCccccccccceeeccccccc--HHHHHHHHHHHHHHHHHHHCHHHHHhHHHHHhhhhhheeecccCcceec
Confidence 8999999999999 999999999997555 9999999999999999999999999999999999999999999999999
Q ss_pred ecchhhccccccccccCCCCCceEEEEecCCC
Q psy6131 190 VTACFDFCAHSHRDLHNMNNGCTVSVVLSNPD 221 (225)
Q Consensus 190 VTaClDFCAH~HrD~HNm~nG~TvVcTLtked 221 (225)
||+|+|||+|+|||+|||+||.+|||||.++|
T Consensus 79 ~sv~~nr~t~~HrD~~~~~~~~~~~~t~~~gd 110 (171)
T PF12851_consen 79 VSVISNRCTHSHRDTHNMPNGYDVLCTLGRGD 110 (171)
T ss_pred eEEEeecCccceecCCCCCCCeEEEEecCCcc
Confidence 99999999999999999999999999999964
No 2
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=65.42 E-value=7 Score=29.92 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=32.7
Q ss_pred eeEEEEeeEecCCCCCCchhHHHHHHHhhhcC-CCCCcc
Q psy6131 45 AWIVVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTTR 82 (225)
Q Consensus 45 avivv~I~~WeGip~~~ad~lY~eLt~~L~~~-G~pT~R 82 (225)
-.++|-|..+.|.+++.-.++|.+|++.|.+. |+|-+|
T Consensus 57 p~a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lgi~~~r 95 (116)
T PTZ00397 57 GCCFVRVTSIGGISRSNNSSIAAAITKILASHLKVKSER 95 (116)
T ss_pred ceEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCccc
Confidence 45666777789999999999999999999997 998766
No 3
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=48.97 E-value=15 Score=24.76 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=28.1
Q ss_pred EEEeeEecCCCCCCchhHHHHHHHhhhcC-CCCC
Q psy6131 48 VVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPT 80 (225)
Q Consensus 48 vv~I~~WeGip~~~ad~lY~eLt~~L~~~-G~pT 80 (225)
+|-|-+++|.+.+.-..||++|++.|.+. |.|-
T Consensus 3 ~i~I~~~~grs~eqk~~l~~~it~~l~~~~~~p~ 36 (62)
T PRK00745 3 TFHIELFEGRTVEQKRKLVEEITRVTVETLGCPP 36 (62)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHcCCCh
Confidence 45677899999999999999999999886 7664
No 4
>PRK09271 flavodoxin; Provisional
Probab=44.85 E-value=42 Score=26.90 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=15.6
Q ss_pred EecCCCCCCchhHHHHHHHhhh
Q psy6131 53 AWEGVPLNQSDGVYAILTNKLN 74 (225)
Q Consensus 53 ~WeGip~~~ad~lY~eLt~~L~ 74 (225)
..+|.+++.+..++..|.+.+.
T Consensus 62 ~~~G~~p~~~~~f~~~l~~~~~ 83 (160)
T PRK09271 62 DNAGRTPPEMKRFIAELAETIG 83 (160)
T ss_pred cCCCcCCHHHHHHHHHHHHHhc
Confidence 3468888777778888876543
No 5
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=42.08 E-value=23 Score=24.29 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=28.8
Q ss_pred EEEeeEecCCCCCCchhHHHHHHHhhhcC-CCCCc
Q psy6131 48 VVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTT 81 (225)
Q Consensus 48 vv~I~~WeGip~~~ad~lY~eLt~~L~~~-G~pT~ 81 (225)
+|=|-+|+|-+.+.-.+||+.|++.|.+. |.|-+
T Consensus 3 ~v~i~l~~grt~eqk~~l~~~it~~l~~~lg~p~~ 37 (64)
T PRK01964 3 IVQIQLLEGRPEEKIKNLIREVTEAISATLDVPKE 37 (64)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcChh
Confidence 45677899999999999999999999875 88754
No 6
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=38.86 E-value=13 Score=29.03 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=21.4
Q ss_pred eecchhhccccccccccCCCCCceEEEE
Q psy6131 189 GVTACFDFCAHSHRDLHNMNNGCTVSVV 216 (225)
Q Consensus 189 GVTaClDFCAH~HrD~HNm~nG~TvVcT 216 (225)
+|... +|+|.|+......+|.+++++
T Consensus 137 ~v~~~--i~GH~H~~~~~~~~g~~~~~n 162 (166)
T cd07404 137 PIDLW--IHGHTHFNFDYRIGGTRVLSN 162 (166)
T ss_pred CCCEE--EECCccccceEEECCEEEEec
Confidence 55554 899999999888899988775
No 7
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=38.48 E-value=30 Score=28.50 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=30.6
Q ss_pred cccceeEEEEeeEecCCCCCCchhHHHHHHHhhhcC
Q psy6131 41 TCSTAWIVVVIVAWEGVPLNQSDGVYAILTNKLNKY 76 (225)
Q Consensus 41 ~C~~avivv~I~~WeGip~~~ad~lY~eLt~~L~~~ 76 (225)
...+.|+|.--+-|++||.+...+.|.++...|++.
T Consensus 115 ~~~tvVlVs~Evg~g~vp~~~~~r~~~d~lG~lnq~ 150 (170)
T PRK05800 115 LPAKIILVTNEVGMGIVPEYRLGRHFRDIAGRLNQQ 150 (170)
T ss_pred CCCCEEEEEcCCcccccCCCHHHHHHHHHHHHHHHH
Confidence 445678888888899999999999999999988763
No 8
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=37.06 E-value=30 Score=22.74 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=28.1
Q ss_pred EEEeeEecCCCCCCchhHHHHHHHhhhcC-CCCCc
Q psy6131 48 VVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTT 81 (225)
Q Consensus 48 vv~I~~WeGip~~~ad~lY~eLt~~L~~~-G~pT~ 81 (225)
+|-|-+.+|-.++...+|+++|++.|.+. |.|-+
T Consensus 2 ~i~i~~~~grt~eqk~~l~~~i~~~l~~~~g~~~~ 36 (58)
T cd00491 2 FVQIYILEGRTDEQKRELIERVTEAVSEILGAPEA 36 (58)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 35567788988899999999999999886 88743
No 9
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=37.01 E-value=29 Score=30.67 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=23.7
Q ss_pred CCCCCCchhHHHHHHHhhhcCCCCCc
Q psy6131 56 GVPLNQSDGVYAILTNKLNKYGLPTT 81 (225)
Q Consensus 56 Gip~~~ad~lY~eLt~~L~~~G~pT~ 81 (225)
|||.|.-+.||..|...+..-|+||+
T Consensus 280 Gv~~P~~~~l~~~v~~~~~~~~~~~~ 305 (305)
T PRK05708 280 GLPLPRLQHLQQRLVAHLRARGLPTD 305 (305)
T ss_pred CCCCchHHHHHHHHHHHHHhcCCCCC
Confidence 89999999999999999999999985
No 10
>PRK01066 porphobilinogen deaminase; Provisional
Probab=35.87 E-value=28 Score=31.52 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=26.2
Q ss_pred hhccccccccccCCCCCceEEEEecCCCC
Q psy6131 194 FDFCAHSHRDLHNMNNGCTVSVVLSNPDS 222 (225)
Q Consensus 194 lDFCAH~HrD~HNm~nG~TvVcTLtkedn 222 (225)
+|++-|+-||+=. +.|.++.+.+-|||.
T Consensus 87 iDiAVHSlKDlPt-~~gl~l~av~~Redp 114 (231)
T PRK01066 87 CDLAIHSAKDLPE-PPKLTVVAITAGLDP 114 (231)
T ss_pred CCEEEecCCcCCC-CCCCEEEEEcCCCCC
Confidence 6999999999998 999999999999984
No 11
>COG1490 Dtd D-Tyr-tRNAtyr deacylase [Translation, ribosomal structure and biogenesis]
Probab=33.58 E-value=26 Score=30.12 Aligned_cols=27 Identities=15% Similarity=0.380 Sum_probs=24.6
Q ss_pred cCCCCCCchhHHHHHHHhhhcCCCCCc
Q psy6131 55 EGVPLNQSDGVYAILTNKLNKYGLPTT 81 (225)
Q Consensus 55 eGip~~~ad~lY~eLt~~L~~~G~pT~ 81 (225)
++-|++.|..||....+.|++.|.|+.
T Consensus 95 ~aa~p~~A~~lYe~f~~~lr~~~~~V~ 121 (145)
T COG1490 95 KAAKPDQAEELYEYFVELLRELGIKVE 121 (145)
T ss_pred ccCChHHHHHHHHHHHHHHHhcCCcce
Confidence 578999999999999999999998874
No 12
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=27.91 E-value=36 Score=28.14 Aligned_cols=44 Identities=25% Similarity=0.357 Sum_probs=29.6
Q ss_pred eeccccccceeeccCch----hHHHHHHHHHHHHHhHHHHHhhhCchhhhc
Q psy6131 120 KYARSKTVRKFRLSVRS----EEQEIEEKMHLLATTISPLYKALAPGAFTN 166 (225)
Q Consensus 120 KfarSk~prkfrl~~~~----eE~~le~~lq~LAT~laPlYk~lAP~Ay~N 166 (225)
+.+||+...||+|.... .++-++..++.-+..| -|+|||..=.|
T Consensus 7 rL~~S~FRsrF~L~~kd~~Y~~~kG~~~I~~Ha~dfi---~~RLapA~p~n 54 (111)
T PF13811_consen 7 RLARSRFRSRFHLGAKDRAYIRDKGLDTIREHARDFI---AKRLAPAQPPN 54 (111)
T ss_pred HHhhCchhccCCCCHHHHHHHHHhCHHHHHHHHHHHH---HHHhCccCCCC
Confidence 35799999999999763 4555555555555544 48888874444
No 13
>PRK15124 2'-5' RNA ligase; Provisional
Probab=27.31 E-value=50 Score=26.95 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=24.0
Q ss_pred eEecCCC--CCCchhHHHHHHHhhhcCCCCCcc
Q psy6131 52 VAWEGVP--LNQSDGVYAILTNKLNKYGLPTTR 82 (225)
Q Consensus 52 ~~WeGip--~~~ad~lY~eLt~~L~~~G~pT~R 82 (225)
++|=|+. .+.-..|+++|.+.|.+.|.+.++
T Consensus 87 vlwlg~~~~~~~L~~L~~~l~~~l~~~G~~~e~ 119 (176)
T PRK15124 87 VVWLGMRQPPRGLLQLANMLRSQAARSGCYQSP 119 (176)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHcCCCCCC
Confidence 4677773 335678999999999999987654
No 14
>PRK05610 rpsQ 30S ribosomal protein S17; Reviewed
Probab=26.77 E-value=13 Score=28.62 Aligned_cols=34 Identities=24% Similarity=0.485 Sum_probs=22.2
Q ss_pred HHHHhhhCchhhhchhhhhccCCccccC----CcCCCCcc
Q psy6131 153 SPLYKALAPGAFTNQCQFEREASECRLG----FKPGRPFS 188 (225)
Q Consensus 153 aPlYk~lAP~Ay~NQv~~E~~a~dCRLG----~k~gRPFS 188 (225)
-|.|+++... ..+-..+... .+|++| ..|.||+|
T Consensus 32 h~kY~K~~~r-~kk~~aHD~~-n~~k~GD~V~I~e~rPlS 69 (84)
T PRK05610 32 HPLYGKIVKR-SKKYHAHDEN-NEAKIGDVVRIMETRPLS 69 (84)
T ss_pred eccccEEEEc-ceEEEEECCC-CCCCCCCEEEEEEcccCC
Confidence 4777777665 2333333333 279999 78999998
No 15
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=25.51 E-value=71 Score=26.74 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=21.7
Q ss_pred eeEecCCCCCCchhHHHHHHHhhhcCCCC
Q psy6131 51 IVAWEGVPLNQSDGVYAILTNKLNKYGLP 79 (225)
Q Consensus 51 I~~WeGip~~~ad~lY~eLt~~L~~~G~p 79 (225)
.++|+|.|+.+ .++..|...|..+|.+
T Consensus 80 ~~I~dg~PR~~--~qa~~l~r~l~~~g~~ 106 (178)
T COG0563 80 GFILDGFPRTL--CQARALKRLLKELGVR 106 (178)
T ss_pred eEEEeCCCCcH--HHHHHHHHHHHHcCCC
Confidence 56899999998 5777888888888843
No 16
>cd02148 Nitroreductase_5 Nitroreductase-like family 5. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=25.39 E-value=50 Score=26.68 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=13.7
Q ss_pred cccceeeccCchhHHHHHHHHHH
Q psy6131 125 KTVRKFRLSVRSEEQEIEEKMHL 147 (225)
Q Consensus 125 k~prkfrl~~~~eE~~le~~lq~ 147 (225)
++.|+|. ..+=.++.|++-|+.
T Consensus 10 rSvR~f~-~~~I~~e~l~~ilea 31 (185)
T cd02148 10 RTANGFT-DEPVSDEQLRAIYDL 31 (185)
T ss_pred cccccCC-CCCCCHHHHHHHHHH
Confidence 3578886 223357777777764
No 17
>COG4050 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.76 E-value=98 Score=26.64 Aligned_cols=52 Identities=25% Similarity=0.367 Sum_probs=30.2
Q ss_pred cCccccccceeeeeecC-c-eeccccccceeeccCchhHHHHHHHHHHHHHhHH
Q psy6131 102 CGASFSFGCSWSMYYNG-C-KYARSKTVRKFRLSVRSEEQEIEEKMHLLATTIS 153 (225)
Q Consensus 102 cGASfSFGcsWsmY~nG-c-KfarSk~prkfrl~~~~eE~~le~~lq~LAT~la 153 (225)
-+|.|+|||-=.---|- | ..-|+|.---.+|.-+..|++-++..+.+|..|-
T Consensus 92 ~~~p~~FGCiGC~RTNEl~~ylvR~k~iPiLelkYP~s~Eea~~~VnkI~~FL~ 145 (152)
T COG4050 92 EEAPFGFGCIGCARTNELCVYLVRRKGIPILELKYPRSEEEAIDFVNKIANFLK 145 (152)
T ss_pred ccCCcccceecccccchHHHHHhhhcCCceEEEeCCCcHHHHHHHHHHHHHHHH
Confidence 47889999963222221 1 2346665556666655556666666666665553
No 18
>PF09885 DUF2112: Uncharacterized protein conserved in archaea (DUF2112); InterPro: IPR012356 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=23.75 E-value=84 Score=27.09 Aligned_cols=44 Identities=25% Similarity=0.505 Sum_probs=28.4
Q ss_pred CccccccceeeeeecCc--------eeccccccceeeccCchhHHHHHHHHHHHHHhH
Q psy6131 103 GASFSFGCSWSMYYNGC--------KYARSKTVRKFRLSVRSEEQEIEEKMHLLATTI 152 (225)
Q Consensus 103 GASfSFGcsWsmY~nGc--------KfarSk~prkfrl~~~~eE~~le~~lq~LAT~l 152 (225)
.|.|+|||+ || ...|.|..=...|.-++.|++..+-.+.+++.|
T Consensus 89 ~~p~~FGC~------GCartnEL~~~lir~k~iPiLel~YP~~~ee~~~~V~~I~~FL 140 (143)
T PF09885_consen 89 DAPIAFGCM------GCARTNELTKYLIRQKGIPILELKYPTNEEEAIDFVNKINDFL 140 (143)
T ss_pred CCCcccccc------ccccHHHHHHHHHhhcCCceEEeeCCCChHHHHHHHHHHHHHH
Confidence 466999997 66 234555444555665566667777777766655
No 19
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=23.47 E-value=32 Score=27.98 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=18.0
Q ss_pred ccccccccccCCCCCceEEEE
Q psy6131 196 FCAHSHRDLHNMNNGCTVSVV 216 (225)
Q Consensus 196 FCAH~HrD~HNm~nG~TvVcT 216 (225)
||+|.|.+.....+|.+++.+
T Consensus 187 ~~GH~H~~~~~~~~g~~~~~~ 207 (240)
T cd07402 187 LCGHVHRPIDGSWGGIPLLTA 207 (240)
T ss_pred EECCcCchHHeEECCEEEEEc
Confidence 799999999999999887653
No 20
>cd02136 Nitroreductase Nitroreductase family. Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a source of reducing equivalents in an obligatory two-election transfer mechanism. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=23.44 E-value=54 Score=25.79 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=14.1
Q ss_pred ccccceeeccCchhHHHHHHHHHH
Q psy6131 124 SKTVRKFRLSVRSEEQEIEEKMHL 147 (225)
Q Consensus 124 Sk~prkfrl~~~~eE~~le~~lq~ 147 (225)
-++.|+|.=. .-.++.|++.|+.
T Consensus 8 RrSvR~f~~~-~v~~e~l~~il~~ 30 (178)
T cd02136 8 RHSVRAFLPD-PVPRETIEEILAA 30 (178)
T ss_pred chhhhcCCCC-CCCHHHHHHHHHH
Confidence 3467888832 3356677776654
No 21
>PRK14980 DNA-directed RNA polymerase subunit G; Provisional
Probab=23.32 E-value=49 Score=27.96 Aligned_cols=20 Identities=40% Similarity=0.496 Sum_probs=15.2
Q ss_pred hhccccccccccCCCCCceE
Q psy6131 194 FDFCAHSHRDLHNMNNGCTV 213 (225)
Q Consensus 194 lDFCAH~HrD~HNm~nG~Tv 213 (225)
-|||||-|.=...-++|.|-
T Consensus 69 ~dFCghGyvV~~~k~~~~~y 88 (127)
T PRK14980 69 DDFCAHGYIVTESSNNGNRY 88 (127)
T ss_pred ceeecCcEEEEEEecCCCeE
Confidence 69999999877766666543
No 22
>cd03157 TM4SF12_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF12_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human transmembrane 4 superfamily member 12 (TM4SF12).
Probab=23.09 E-value=2e+02 Score=22.07 Aligned_cols=19 Identities=16% Similarity=0.354 Sum_probs=13.7
Q ss_pred CCchhHHHHHHHhhhcCCC
Q psy6131 60 NQSDGVYAILTNKLNKYGL 78 (225)
Q Consensus 60 ~~ad~lY~eLt~~L~~~G~ 78 (225)
|+.+.|=..|.++|.+|+.
T Consensus 7 ~~~~~~~~~l~~~~~~Y~~ 25 (103)
T cd03157 7 PVQRSDMISLKSRMSNFGL 25 (103)
T ss_pred hHHHHHHHHHHHHHHHHCC
Confidence 3456777778888888865
No 23
>PF11574 DUF3235: Protein of unknown function (DUF3235); InterPro: IPR021630 Some members in this family of proteins with unknown function are annotated as RpfA however this cannot be confirmed. ; PDB: 3B4Q_A.
Probab=22.78 E-value=60 Score=25.95 Aligned_cols=18 Identities=33% Similarity=0.765 Sum_probs=15.2
Q ss_pred chhHHHHHHHhhhcCCCC
Q psy6131 62 SDGVYAILTNKLNKYGLP 79 (225)
Q Consensus 62 ad~lY~eLt~~L~~~G~p 79 (225)
.|.+|+.|.++|.+||+.
T Consensus 42 vDavy~~v~~~l~~~Gi~ 59 (91)
T PF11574_consen 42 VDAVYNAVVDRLAAYGIQ 59 (91)
T ss_dssp HHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 589999999999999974
No 24
>PF14268 YoaP: YoaP-like
Probab=22.56 E-value=49 Score=23.07 Aligned_cols=9 Identities=33% Similarity=1.110 Sum_probs=8.1
Q ss_pred eeeeeecCc
Q psy6131 111 SWSMYYNGC 119 (225)
Q Consensus 111 sWsmY~nGc 119 (225)
+||+||||=
T Consensus 22 ~yalFYnGk 30 (44)
T PF14268_consen 22 TYALFYNGK 30 (44)
T ss_pred EEEEEECCE
Confidence 799999995
No 25
>PTZ00250 variable surface protein Vir23; Provisional
Probab=21.71 E-value=93 Score=29.62 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=26.8
Q ss_pred eccCc-hhHHHHHHHHHHHHHhHHHHHhhhCchhhh
Q psy6131 131 RLSVR-SEEQEIEEKMHLLATTISPLYKALAPGAFT 165 (225)
Q Consensus 131 rl~~~-~eE~~le~~lq~LAT~laPlYk~lAP~Ay~ 165 (225)
|+.|. ++|+++||-|++.|..|--.-|.-.-.+|.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (350)
T PTZ00250 313 KKSGHKKKEENIEDYMKNYAAHLDNEMKNRVHLGYH 348 (350)
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 45555 589999999999999998877765544444
No 26
>KOG4300|consensus
Probab=21.63 E-value=57 Score=30.24 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=12.7
Q ss_pred ccccCCCCCc--eEEEEe
Q psy6131 202 RDLHNMNNGC--TVSVVL 217 (225)
Q Consensus 202 rD~HNm~nG~--TvVcTL 217 (225)
.++|.++||| ||||||
T Consensus 136 e~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 136 ENLPQLADGSYDTVVCTL 153 (252)
T ss_pred hcCcccccCCeeeEEEEE
Confidence 4566667999 999998
No 27
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=21.63 E-value=29 Score=31.97 Aligned_cols=14 Identities=29% Similarity=0.814 Sum_probs=11.1
Q ss_pred ceecchhhccccccc
Q psy6131 188 SGVTACFDFCAHSHR 202 (225)
Q Consensus 188 SGVTaClDFCAH~Hr 202 (225)
+.|-.||||| |+|-
T Consensus 168 ~~igvCiDtc-H~~A 181 (280)
T COG0648 168 ERIGVCIDTC-HAFA 181 (280)
T ss_pred CceEEEEEch-hhhh
Confidence 5688999998 7764
No 28
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=21.61 E-value=81 Score=21.15 Aligned_cols=33 Identities=21% Similarity=0.160 Sum_probs=26.4
Q ss_pred EEeeEe-cCCCCCCchhHHHHHHHhhhcC-CCCCc
Q psy6131 49 VVIVAW-EGVPLNQSDGVYAILTNKLNKY-GLPTT 81 (225)
Q Consensus 49 v~I~~W-eGip~~~ad~lY~eLt~~L~~~-G~pT~ 81 (225)
|=|-+. +|-+.+....|+.+|++.|... |.|-+
T Consensus 3 i~i~i~~~grt~eqK~~l~~~it~~l~~~lg~~~~ 37 (63)
T TIGR00013 3 VNIYILKEGRTDEQKRQLIEGVTEAMAETLGANLE 37 (63)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 344556 7888899999999999999987 88743
No 29
>cd02138 Nitroreductase_2 Nitroreductase-like family 2. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=21.59 E-value=70 Score=25.76 Aligned_cols=22 Identities=9% Similarity=0.069 Sum_probs=12.3
Q ss_pred ccccceeeccCchhHHHHHHHHH
Q psy6131 124 SKTVRKFRLSVRSEEQEIEEKMH 146 (225)
Q Consensus 124 Sk~prkfrl~~~~eE~~le~~lq 146 (225)
.++.|+|.= ..=.++.|++.++
T Consensus 12 RrSvR~f~~-~~v~~e~l~~il~ 33 (181)
T cd02138 12 RWSPRAFDG-EPVPREDLLSLLE 33 (181)
T ss_pred hcCcccCCC-CCCCHHHHHHHHH
Confidence 346788872 2234556666554
No 30
>COG5450 Transcription regulator of the Arc/MetJ class [Transcription]
Probab=21.57 E-value=58 Score=25.58 Aligned_cols=33 Identities=30% Similarity=0.429 Sum_probs=28.2
Q ss_pred EeeEecCCCCCCchhHHHHHHHhhhcCCCCCcc
Q psy6131 50 VIVAWEGVPLNQSDGVYAILTNKLNKYGLPTTR 82 (225)
Q Consensus 50 ~I~~WeGip~~~ad~lY~eLt~~L~~~G~pT~R 82 (225)
.|+-|..+++-+.+--=.-++++++.+|++|.|
T Consensus 7 ~~~~~~~~~r~~I~iDd~l~a~~~r~~~L~~kr 39 (84)
T COG5450 7 VILPWSRRSRTQIEIDDLLLAETLRALGLSTKR 39 (84)
T ss_pred ceeecccccceeeeehHHHHHHHHHHHccchhH
Confidence 488999999999887777788999999988765
No 31
>PF15251 DUF4588: Domain of unknown function (DUF4588)
Probab=21.56 E-value=98 Score=27.79 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHhHHHHHh---hhCchhhhc
Q psy6131 137 EEQEIEEKMHLLATTISPLYK---ALAPGAFTN 166 (225)
Q Consensus 137 eE~~le~~lq~LAT~laPlYk---~lAP~Ay~N 166 (225)
..++|--.||+-|+.||=||+ .-..+.|+|
T Consensus 25 ~~~~Lw~~Fq~~A~aVA~LY~~~~~~l~~~F~~ 57 (232)
T PF15251_consen 25 SNQKLWNDFQNSATAVAQLYKQQGDSLWDEFQN 57 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHH
Confidence 457899999999999999999 444455554
No 32
>COG2154 Pterin-4a-carbinolamine dehydratase [Coenzyme metabolism]
Probab=21.43 E-value=47 Score=26.73 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=17.9
Q ss_pred ccccccCCCCCceEEEEecCCC
Q psy6131 200 SHRDLHNMNNGCTVSVVLSNPD 221 (225)
Q Consensus 200 ~HrD~HNm~nG~TvVcTLtked 221 (225)
-|.|++|-+| +|++||+-+|
T Consensus 58 HHPdi~~~y~--~V~vtltTHd 77 (101)
T COG2154 58 HHPDIEVVYN--RVTVTLTTHD 77 (101)
T ss_pred CCCCeEEEee--eEEEEEEEcc
Confidence 5999999999 9999999876
No 33
>cd02144 iodotyrosine_dehalogenase Iodotyrosine dehalogenase catalyzes the removal of iodine from the 3, 5 positions of L-tyosine in thyroid, liver and kidney, using NADPH as electron donor. This enzyme is a homolog of the nitroreductase family. These enzymes are usually homodimers.
Probab=21.09 E-value=69 Score=25.35 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=11.2
Q ss_pred ccceeeccCchhHHHHHHHHHH
Q psy6131 126 TVRKFRLSVRSEEQEIEEKMHL 147 (225)
Q Consensus 126 ~prkfrl~~~~eE~~le~~lq~ 147 (225)
+.|+|. ..+=.++.|++.|+.
T Consensus 10 SiR~f~-~~~v~~e~l~~il~a 30 (193)
T cd02144 10 SVRKFS-DEPVPREVIENCIRT 30 (193)
T ss_pred eccCCC-CCCCCHHHHHHHHHH
Confidence 467776 222245566665543
No 34
>PF14459 Prok-E2_C: Prokaryotic E2 family C
Probab=20.90 E-value=71 Score=27.03 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=17.0
Q ss_pred CchhHHHHHHHHHHHHHhHHH
Q psy6131 134 VRSEEQEIEEKMHLLATTISP 154 (225)
Q Consensus 134 ~~~eE~~le~~lq~LAT~laP 154 (225)
..++-+++..+||+||+.|-|
T Consensus 35 ~g~as~~~a~~l~~LA~sINp 55 (131)
T PF14459_consen 35 SGEASSFQAQNLQSLARSINP 55 (131)
T ss_pred cchhHHHHHHHHHHHHHhcCC
Confidence 345667899999999998876
No 35
>TIGR00212 hemC porphobilinogen deaminase. Biosynthesis of cofactors, prosthetic groups, and carriers: Heme and porphyrin
Probab=20.83 E-value=79 Score=29.38 Aligned_cols=29 Identities=28% Similarity=0.518 Sum_probs=25.7
Q ss_pred hhcccccccccc-CCCCCceEEEEecCCCC
Q psy6131 194 FDFCAHSHRDLH-NMNNGCTVSVVLSNPDS 222 (225)
Q Consensus 194 lDFCAH~HrD~H-Nm~nG~TvVcTLtkedn 222 (225)
+|+.-||-||+= .+++|.++.+++.|+|.
T Consensus 70 iDiAVHSlKDlPt~lp~gl~i~av~~Redp 99 (292)
T TIGR00212 70 IDLAVHSLKDVPTVLPEGLEIAAVLKREDP 99 (292)
T ss_pred CCEEEeccccCCCCCCCCcEEEEEecCCCC
Confidence 699999999985 46789999999999984
No 36
>PRK00072 hemC porphobilinogen deaminase; Reviewed
Probab=20.57 E-value=83 Score=29.30 Aligned_cols=29 Identities=21% Similarity=0.449 Sum_probs=25.4
Q ss_pred hhccccccccccC-CCCCceEEEEecCCCC
Q psy6131 194 FDFCAHSHRDLHN-MNNGCTVSVVLSNPDS 222 (225)
Q Consensus 194 lDFCAH~HrD~HN-m~nG~TvVcTLtkedn 222 (225)
+|+.-||-||+=. ++.|.++.+.|.|+|.
T Consensus 74 iDiAVHSlKDlP~~l~~gl~i~avl~R~dp 103 (295)
T PRK00072 74 IDIAVHSLKDVPTELPEGLVLAAIPEREDP 103 (295)
T ss_pred CCEEEeccCcCCCCCCCCcEEEEEecCCCC
Confidence 6999999999864 6779999999999984
No 37
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=20.29 E-value=89 Score=20.88 Aligned_cols=32 Identities=28% Similarity=0.264 Sum_probs=26.1
Q ss_pred EEEeeEecCCCCCCchhHHHHHHHhhhcC-CCC
Q psy6131 48 VVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLP 79 (225)
Q Consensus 48 vv~I~~WeGip~~~ad~lY~eLt~~L~~~-G~p 79 (225)
+|-|-+..|-+.+.-.+|+..|++.|.+. |.|
T Consensus 3 ~i~i~~~~Grs~eqk~~l~~~it~~l~~~~~~p 35 (61)
T PRK02220 3 YVHIKLIEGRTEEQLKALVKDVTAAVSKNTGAP 35 (61)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 34556678888888899999999999876 875
Done!