Query psy6131
Match_columns 225
No_of_seqs 52 out of 54
Neff 2.5
Searched_HMMs 29240
Date Fri Aug 16 18:26:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6131.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6131hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mlc_A FG41 malonate semialdeh 71.5 4.3 0.00015 31.2 4.1 39 43-81 62-100 (136)
2 2apl_A Hypothetical protein PG 60.2 4.5 0.00015 33.8 2.3 21 62-82 127-151 (157)
3 2aal_A Malonate semialdehyde d 58.5 10 0.00036 28.0 3.9 39 43-82 63-102 (131)
4 2opa_A Probable tautomerase YW 55.8 6.2 0.00021 25.0 2.0 34 49-82 3-37 (61)
5 3ge5_A Putative NAD(P)H:FMN ox 55.0 7.9 0.00027 30.8 2.9 35 123-167 36-70 (198)
6 1otf_A 4-oxalocrotonate tautom 54.7 6.6 0.00022 24.9 2.0 35 49-83 3-38 (62)
7 1mww_A Hypothetical protein HI 53.2 7 0.00024 28.8 2.2 38 45-82 58-96 (128)
8 3abf_A 4-oxalocrotonate tautom 52.1 7.5 0.00026 24.8 1.9 35 48-82 3-38 (64)
9 2b67_A COG0778: nitroreductase 51.4 9.1 0.00031 29.2 2.6 33 125-167 14-46 (204)
10 3b64_A Macrophage migration in 47.8 12 0.00041 26.9 2.6 38 45-82 56-94 (112)
11 2wkb_A Macrophage migration in 47.2 12 0.00041 27.7 2.6 38 45-82 56-94 (125)
12 2xcz_A Possible ATLS1-like lig 46.7 16 0.00054 26.3 3.1 38 45-82 56-94 (115)
13 1hfo_A Migration inhibitory fa 43.3 11 0.00036 27.1 1.7 38 45-82 55-93 (113)
14 1uiz_A MIF, macrophage migrati 41.9 12 0.0004 27.0 1.8 38 45-82 56-94 (115)
15 2hay_A Putative NAD(P)H-flavin 40.9 17 0.00058 28.1 2.7 34 124-167 19-52 (224)
16 3ry0_A Putative tautomerase; o 40.5 14 0.00049 24.1 1.9 34 48-81 2-36 (65)
17 3e39_A Putative nitroreductase 39.9 18 0.00062 27.4 2.7 34 124-167 15-48 (178)
18 3of4_A Nitroreductase; structu 39.2 18 0.00061 28.4 2.6 34 124-167 11-44 (209)
19 3mb2_A 4-oxalocrotonate tautom 39.2 15 0.00051 24.6 1.9 34 48-81 3-37 (72)
20 3gfa_A Putative nitroreductase 38.9 19 0.00066 27.2 2.7 33 125-167 11-43 (198)
21 3pxv_A Nitroreductase; flavopr 36.9 21 0.00072 27.0 2.6 34 124-167 13-46 (189)
22 2os5_A Acemif; macrophage migr 36.9 16 0.00054 26.6 1.8 38 45-82 56-94 (119)
23 3ek3_A Nitroreductase; YP_2117 36.0 23 0.00078 26.9 2.7 34 124-167 14-47 (190)
24 3ej9_A Alpha-subunit of trans- 35.3 18 0.00063 24.8 1.9 35 48-82 3-38 (76)
25 3eo8_A BLUB-like flavoprotein; 35.2 24 0.00081 27.1 2.7 33 125-167 12-44 (219)
26 3m5k_A Putative NADH dehydroge 34.9 25 0.00087 26.5 2.8 35 123-167 14-48 (172)
27 2jry_A R11.6, I-superfamily co 34.7 7.1 0.00024 27.0 -0.3 8 109-116 37-44 (46)
28 3n4h_A Putative tautomerase; C 34.2 19 0.00066 27.2 2.0 38 45-82 61-99 (148)
29 3bm1_A Protein YDJA, nitroredu 34.0 25 0.00087 26.0 2.6 23 124-147 10-32 (183)
30 3e10_A Putative NADH oxidase; 33.9 26 0.0009 26.1 2.7 34 124-167 8-41 (168)
31 3kwk_A Putative NADH dehydroge 33.7 24 0.00083 26.8 2.5 34 124-167 19-52 (175)
32 3h4o_A Nitroreductase family p 33.0 27 0.00091 27.4 2.7 35 123-167 28-62 (191)
33 2x4k_A 4-oxalocrotonate tautom 32.9 25 0.00085 21.8 2.1 36 48-83 5-41 (63)
34 4dn2_A Nitroreductase; structu 32.5 27 0.00093 27.3 2.7 35 123-167 31-65 (208)
35 2wqf_A Copper induced nitrored 30.0 44 0.0015 24.9 3.4 34 125-167 11-44 (202)
36 3g14_A Nitroreductase family p 28.4 35 0.0012 26.3 2.7 34 124-167 11-44 (193)
37 2fre_A NAD(P)H-flavin oxidored 28.4 36 0.0012 26.2 2.7 35 123-167 19-53 (200)
38 3t5s_A Gilaa.00834.A, macropha 28.3 37 0.0013 25.9 2.7 38 46-83 78-116 (135)
39 3m21_A Probable tautomerase HP 27.8 24 0.00082 23.2 1.4 34 48-81 2-39 (67)
40 3b4q_A Uncharacterized protein 27.7 25 0.00087 27.1 1.7 19 62-80 44-62 (94)
41 2i7h_A Nitroreductase-like fam 27.0 38 0.0013 25.5 2.5 34 124-167 17-50 (189)
42 2wzv_A NFNB protein; nitroredu 26.8 38 0.0013 26.1 2.6 34 124-167 26-59 (235)
43 3gag_A Putative NADH dehydroge 26.7 40 0.0014 25.8 2.6 35 124-167 13-47 (206)
44 1vfr_A NAD(P)H\:FMN oxidoreduc 26.6 40 0.0014 25.7 2.6 34 125-167 13-46 (218)
45 3m20_A 4-oxalocrotonate tautom 26.6 26 0.00089 22.9 1.4 31 49-80 3-34 (62)
46 3twe_A Alpha4H; unknown functi 26.4 26 0.0009 21.6 1.2 10 62-71 3-12 (27)
47 3gr3_A Nitroreductase; structu 25.7 41 0.0014 26.4 2.6 33 125-167 17-49 (230)
48 3qdl_A Oxygen-insensitive NADP 25.6 43 0.0015 26.0 2.7 35 124-167 16-50 (210)
49 3ge6_A Nitroreductase; structu 24.3 47 0.0016 25.5 2.6 35 124-167 17-51 (212)
50 3b71_D T-cell surface glycopro 24.1 17 0.00059 22.4 0.1 12 86-97 12-23 (26)
51 1icr_A Oxygen-insensitive NAD( 23.3 51 0.0018 24.9 2.7 34 125-167 11-44 (217)
52 1gyx_A YDCE, B1461, hypothetic 23.2 37 0.0013 23.0 1.7 36 48-83 2-39 (76)
53 3bem_A Putative NAD(P)H nitror 22.9 49 0.0017 25.6 2.6 35 124-167 23-57 (218)
54 3fwu_A Macrophage migration in 22.8 52 0.0018 25.0 2.6 37 46-82 78-115 (133)
55 2h0u_A NADPH-flavin oxidoreduc 21.3 59 0.002 24.7 2.7 34 125-167 14-47 (217)
56 3gb5_A IYD-1, iodotyrosine deh 20.9 55 0.0019 27.5 2.6 34 124-167 64-97 (259)
57 2cs1_A PMS1 protein homolog 1; 20.8 98 0.0033 21.7 3.6 43 145-189 35-92 (92)
58 3fwt_A Macrophage migration in 20.7 60 0.0021 24.6 2.6 35 48-82 80-115 (133)
59 3n2s_A NADPH-dependent nitro/f 20.7 59 0.002 26.6 2.7 34 124-167 11-44 (249)
60 2v1l_A Hypothetical protein; p 20.3 32 0.0011 27.9 1.0 35 53-87 5-44 (148)
No 1
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=71.50 E-value=4.3 Score=31.20 Aligned_cols=39 Identities=18% Similarity=0.390 Sum_probs=33.2
Q ss_pred cceeEEEEeeEecCCCCCCchhHHHHHHHhhhcCCCCCc
Q psy6131 43 STAWIVVVIVAWEGVPLNQSDGVYAILTNKLNKYGLPTT 81 (225)
Q Consensus 43 ~~avivv~I~~WeGip~~~ad~lY~eLt~~L~~~G~pT~ 81 (225)
...+++|-|-+++|-+.+.-.+||.+|++.|...|.|-.
T Consensus 62 s~~~v~I~I~~~~gRt~EqK~~L~~~it~~l~~lg~~~~ 100 (136)
T 3mlc_A 62 SPSVVIIHVFTQAGRTIETKQRVFAAITESLAPIGVAGS 100 (136)
T ss_dssp CSCCEEEEEEEETTCCHHHHHHHHHHHHHHHTTTTCCGG
T ss_pred CCCeEEEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 467889999999999999999999999999933487753
No 2
>2apl_A Hypothetical protein PG0816; structural genomics, PSI, protein initiative, midwest center for structural genomics, MCSG, U function; 2.01A {Porphyromonas gingivalis} SCOP: a.258.1.1
Probab=60.18 E-value=4.5 Score=33.79 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=17.0
Q ss_pred chhHHHHHHHhh----hcCCCCCcc
Q psy6131 62 SDGVYAILTNKL----NKYGLPTTR 82 (225)
Q Consensus 62 ad~lY~eLt~~L----~~~G~pT~R 82 (225)
-|+||+|||.++ .+||+||.+
T Consensus 127 yd~LYTELTGtI~l~iEenGl~~~~ 151 (157)
T 2apl_A 127 YEHLYTELTGTIVLLIESNHLPTIG 151 (157)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCC-
T ss_pred hhHHHHHHhhHHHHHHHhcCCcccc
Confidence 489999999975 578999964
No 3
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=58.47 E-value=10 Score=28.05 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=32.2
Q ss_pred cceeEEEEeeEecCCCCCCchhHHHHHHHhhhcC-CCCCcc
Q psy6131 43 STAWIVVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTTR 82 (225)
Q Consensus 43 ~~avivv~I~~WeGip~~~ad~lY~eLt~~L~~~-G~pT~R 82 (225)
...+++|-|. .+|.+.+.-.+||.+|++.|.+. |.|-++
T Consensus 63 ~~~~~~I~i~-~~grt~eqK~~l~~~l~~~l~~~lg~~~~~ 102 (131)
T 2aal_A 63 SSAVVLLTVI-SRPRSEEQKVCFYKLLTGALERDCGISPDD 102 (131)
T ss_dssp CTTCEEEEEE-ESCCCHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred CCCeEEEEEE-eCCCCHHHHHHHHHHHHHHHHHHhCcCccc
Confidence 3456667777 99999999999999999999986 888654
No 4
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=55.77 E-value=6.2 Score=24.98 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=29.2
Q ss_pred EEeeEecCCCCCCchhHHHHHHHhhhcC-CCCCcc
Q psy6131 49 VVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTTR 82 (225)
Q Consensus 49 v~I~~WeGip~~~ad~lY~eLt~~L~~~-G~pT~R 82 (225)
|-|-+++|.+.+.-.+|+..|++.|.+. |.|-++
T Consensus 3 i~i~~~~grs~eqk~~l~~~i~~~l~~~lg~~~~~ 37 (61)
T 2opa_A 3 VTVKMLEGRTDEQKRNLVEKVTEAVKETTGASEEK 37 (61)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcCe
Confidence 4567789999999999999999999986 998654
No 5
>3ge5_A Putative NAD(P)H:FMN oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: FMN UNL; 1.70A {Porphyromonas gingivalis W83}
Probab=55.03 E-value=7.9 Score=30.77 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=23.2
Q ss_pred cccccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 123 RSKTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 123 rSk~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
.-++.|+|. ..+=.++.|++.|+.. +.||.+++.|
T Consensus 36 ~RrSvR~f~-~~~V~~e~l~~il~aa---------~~APS~~n~Q 70 (198)
T 3ge5_A 36 TRRSVRKFI-DRPVEEEKLMAILEAG---------RIAPSAHNYQ 70 (198)
T ss_dssp TCCCCCCBC-SCCCCHHHHHHHHHHH---------HHCCCGGGCC
T ss_pred hCcccccCC-CCCCCHHHHHHHHHHH---------HHCCCcCCCC
Confidence 334689995 3333567788777632 6788888777
No 6
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=54.71 E-value=6.6 Score=24.86 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=29.6
Q ss_pred EEeeEecCCCCCCchhHHHHHHHhhhcC-CCCCccc
Q psy6131 49 VVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTTRR 83 (225)
Q Consensus 49 v~I~~WeGip~~~ad~lY~eLt~~L~~~-G~pT~RR 83 (225)
|-|-+++|.+.+.-..|+..|++.|.+. |.|-++.
T Consensus 3 i~I~~~~grs~e~k~~l~~~i~~~l~~~lg~p~~~v 38 (62)
T 1otf_A 3 AQLYIIEGRTDEQKETLIRQVSEAMANSLDAPLERV 38 (62)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccE
Confidence 4567789999999999999999999986 9987543
No 7
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=53.24 E-value=7 Score=28.81 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=33.1
Q ss_pred eeEEEEeeEecCCCCCCchhHHHHHHHhhhcC-CCCCcc
Q psy6131 45 AWIVVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTTR 82 (225)
Q Consensus 45 avivv~I~~WeGip~~~ad~lY~eLt~~L~~~-G~pT~R 82 (225)
.+++|-|.+++|.+.+.-.+||.+|++.|.+. |.|-++
T Consensus 58 ~~~~i~i~~~~grt~eqK~~l~~~l~~~l~~~lg~~~~~ 96 (128)
T 1mww_A 58 DYTVIEINLMAGRMEGTKKRLIKMLFSELEYKLGIRAHD 96 (128)
T ss_dssp TCEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred CcEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcChhh
Confidence 56777888899999999999999999999985 888754
No 8
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=52.10 E-value=7.5 Score=24.84 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=28.7
Q ss_pred EEEeeEecCCCCCCchhHHHHHHHhhhcC-CCCCcc
Q psy6131 48 VVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTTR 82 (225)
Q Consensus 48 vv~I~~WeGip~~~ad~lY~eLt~~L~~~-G~pT~R 82 (225)
+|-|-++.|.+.+.-.+|+.+|++.|.+. |.|-++
T Consensus 3 ~i~i~~~~g~s~eqk~~l~~~lt~~l~~~lg~~~~~ 38 (64)
T 3abf_A 3 VLKVTLLEGRPPEKKRELVRRLTEMASRLLGEPYEE 38 (64)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 45566789988888899999999999985 988654
No 9
>2b67_A COG0778: nitroreductase; alpha-beta sandwich, FMN binding pocket, structural genomics protein structure initiative; HET: MSE FMN; 2.05A {Streptococcus pneumoniae} SCOP: d.90.1.1
Probab=51.42 E-value=9.1 Score=29.16 Aligned_cols=33 Identities=18% Similarity=0.427 Sum_probs=23.9
Q ss_pred cccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 125 KTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 125 k~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
++.|+|. ..+=.++.|++.|+.. ++||.+++.|
T Consensus 14 rSvR~f~-~~~v~~e~l~~il~aa---------~~APS~~n~Q 46 (204)
T 2b67_A 14 HATKHFT-DKLVDPKDVRTAIEIA---------TLAPSAHNSQ 46 (204)
T ss_dssp CBCCCBC-SCCCCHHHHHHHHHHH---------TTSCCGGGCC
T ss_pred hhhhccC-CCCCCHHHHHHHHHHH---------HhCcCcccCC
Confidence 4689998 4443567777776653 6899998887
No 10
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=47.79 E-value=12 Score=26.90 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=31.2
Q ss_pred eeEEEEeeEecCCCCCCchhHHHHHHHhhhcC-CCCCcc
Q psy6131 45 AWIVVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTTR 82 (225)
Q Consensus 45 avivv~I~~WeGip~~~ad~lY~eLt~~L~~~-G~pT~R 82 (225)
.+++|-|.+.+|+.++.-.+||.+|++.|.+. |.|-+|
T Consensus 56 ~~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~ 94 (112)
T 3b64_A 56 PVACVRVEALGGYGPSEPEKVTSIVTAAITKECGIVADR 94 (112)
T ss_dssp SCEEEEEECTTCCCTTHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred CEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcce
Confidence 34455666778999999999999999999987 988765
No 11
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=47.23 E-value=12 Score=27.65 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=26.8
Q ss_pred eeEEEEeeEecCCCCCCchhHHHHHHHhhhcC-CCCCcc
Q psy6131 45 AWIVVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTTR 82 (225)
Q Consensus 45 avivv~I~~WeGip~~~ad~lY~eLt~~L~~~-G~pT~R 82 (225)
.+.+|-|.+.+|..++.-.+||.+|++.|.+. |.|-+|
T Consensus 56 p~~~v~I~~~~g~t~eqk~~l~~~i~~~l~~~lgi~~~~ 94 (125)
T 2wkb_A 56 GYCFVRLTSIGGINRSNNSLLADKITKILSNHLSVKPRR 94 (125)
T ss_dssp SCEEEEEECC-----CTHHHHHHHHHHHHHHHHCCCGGG
T ss_pred CcEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCcce
Confidence 44555666788999999999999999999986 988765
No 12
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=46.67 E-value=16 Score=26.30 Aligned_cols=38 Identities=13% Similarity=0.264 Sum_probs=30.3
Q ss_pred eeEEEEeeEecCCCCCCchhHHHHHHHhhhcC-CCCCcc
Q psy6131 45 AWIVVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTTR 82 (225)
Q Consensus 45 avivv~I~~WeGip~~~ad~lY~eLt~~L~~~-G~pT~R 82 (225)
.+.+|-|-+.+|..++.-.+||.+|++.|.+. |.|-+|
T Consensus 56 ~~~~v~i~~~~g~t~eqk~~l~~~i~~~l~~~lgi~~~~ 94 (115)
T 2xcz_A 56 PTCYVEVKSIGALDGSRTQEVSELVCGHIEQNLGIPADR 94 (115)
T ss_dssp SCEEEEEEESSCCCTTHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred cEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCccc
Confidence 33444555678999999999999999999986 988755
No 13
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=43.34 E-value=11 Score=27.07 Aligned_cols=38 Identities=21% Similarity=0.306 Sum_probs=31.2
Q ss_pred eeEEEEeeEecCCCCCCchhHHHHHHHhhhcC-CCCCcc
Q psy6131 45 AWIVVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTTR 82 (225)
Q Consensus 45 avivv~I~~WeGip~~~ad~lY~eLt~~L~~~-G~pT~R 82 (225)
.+.+|-|-+.+|..++.-.+||.+|++.|.+. |.|-+|
T Consensus 55 ~~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~ 93 (113)
T 1hfo_A 55 PAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNR 93 (113)
T ss_dssp SCEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred CeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcCe
Confidence 44555666789999999999999999999987 988765
No 14
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=41.94 E-value=12 Score=27.01 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=30.8
Q ss_pred eeEEEEeeEecCCCCCCchhHHHHHHHhhhcC-CCCCcc
Q psy6131 45 AWIVVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTTR 82 (225)
Q Consensus 45 avivv~I~~WeGip~~~ad~lY~eLt~~L~~~-G~pT~R 82 (225)
.+.+|-|-+.+|..++.-.+||.+|++.|.+. |.|-+|
T Consensus 56 ~~~~v~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~ 94 (115)
T 1uiz_A 56 PCAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANR 94 (115)
T ss_dssp SCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred CeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcce
Confidence 34455566788999999999999999999987 988765
No 15
>2hay_A Putative NAD(P)H-flavin oxidoreductase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE FMN; 2.11A {Streptococcus pyogenes serotype M1}
Probab=40.95 E-value=17 Score=28.07 Aligned_cols=34 Identities=12% Similarity=0.287 Sum_probs=22.0
Q ss_pred ccccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 124 SKTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 124 Sk~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
.++.|+|. ..+=.++.|++-|+.. ++||.+++.|
T Consensus 19 RrSvR~f~-~~~v~~e~l~~il~aa---------~~APS~~n~Q 52 (224)
T 2hay_A 19 RTAVRVYK-EEKISDEDLALILDAA---------WLSPSSIGLE 52 (224)
T ss_dssp CCBCCCBC-SCCCCHHHHHHHHHHH---------HTSCCGGGCC
T ss_pred chhhhccC-CCCCCHHHHHHHHHHH---------HhCccccCCC
Confidence 35689998 5443566777766643 4677777666
No 16
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=40.46 E-value=14 Score=24.11 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=28.5
Q ss_pred EEEeeEecCCCCCCchhHHHHHHHhhhcC-CCCCc
Q psy6131 48 VVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTT 81 (225)
Q Consensus 48 vv~I~~WeGip~~~ad~lY~eLt~~L~~~-G~pT~ 81 (225)
+|-|-+++|.+.+.-..|+..|++.|.+. |.|-+
T Consensus 2 ~i~I~~~~Grs~eqk~~L~~~it~~~~~~lg~p~~ 36 (65)
T 3ry0_A 2 LIRVTLLEGRSPQEVAALGEALTAAAHETLGTPVE 36 (65)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 35567789999999999999999999984 88854
No 17
>3e39_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN PGE; 1.70A {Desulfovibrio desulfuricans subsp}
Probab=39.90 E-value=18 Score=27.40 Aligned_cols=34 Identities=15% Similarity=0.350 Sum_probs=23.5
Q ss_pred ccccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 124 SKTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 124 Sk~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
-++.|+|. ..+=.++.|++.|+.. +.||.+++.|
T Consensus 15 RrSvR~f~-~~~v~~e~l~~il~aa---------~~aPs~~n~q 48 (178)
T 3e39_A 15 RRSIRRYT-DEAVSDEAVRLILEAG---------IWAPSGLNNQ 48 (178)
T ss_dssp CCBCCCBC-SCCCCHHHHHHHHHHH---------HTSCCGGGCC
T ss_pred CcchhcCC-CCCCCHHHHHHHHHHH---------HhCCCCCCCC
Confidence 34689997 3333677788777654 5788888776
No 18
>3of4_A Nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; HET: FMN UNL FAD; 1.90A {Idiomarina loihiensis} SCOP: d.90.1.0
Probab=39.22 E-value=18 Score=28.42 Aligned_cols=34 Identities=9% Similarity=0.212 Sum_probs=22.3
Q ss_pred ccccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 124 SKTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 124 Sk~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
.++.|+|. ..+-.++.|++.|+.. +.||.+++-|
T Consensus 11 RrS~R~f~-~~~v~~e~l~~il~~a---------~~aPs~~n~q 44 (209)
T 3of4_A 11 RYATADFS-GAHITDDVLDKLLNTT---------RLTASSYGLQ 44 (209)
T ss_dssp CCBCSSBC-SCCCCHHHHHHHHHHH---------HTCCCGGGCC
T ss_pred hhhHHhcC-CCCCCHHHHHHHHHHH---------HHCcCcCCCC
Confidence 45689997 4444677788877642 4566666654
No 19
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=39.17 E-value=15 Score=24.65 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=28.6
Q ss_pred EEEeeEecCCCCCCchhHHHHHHHhhhcC-CCCCc
Q psy6131 48 VVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTT 81 (225)
Q Consensus 48 vv~I~~WeGip~~~ad~lY~eLt~~L~~~-G~pT~ 81 (225)
+|-|-+++|.+.+.-..|+.+|++.|.+. |.|-+
T Consensus 3 ~I~I~~~~grs~eqK~~L~~~it~~l~~~lg~p~~ 37 (72)
T 3mb2_A 3 LLRITMLEGRSTEQKAELARALSAAAAAAFDVPLA 37 (72)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 45667789999999999999999999885 88853
No 20
>3gfa_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN GOL; 1.35A {Clostridium difficile 630}
Probab=38.91 E-value=19 Score=27.18 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=22.5
Q ss_pred cccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 125 KTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 125 k~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
++.|+|. ..+=.++.|++.|+.- +.||.+.+.|
T Consensus 11 rSvR~f~-~~~v~~e~l~~il~aa---------~~APS~~n~Q 43 (198)
T 3gfa_A 11 RSIRKYK-NQSISHETIEKIIEAG---------INAPSSKNRQ 43 (198)
T ss_dssp CBCCCBC-SCCCCHHHHHHHHHHH---------HTSCCGGGCC
T ss_pred hhhhcCC-CCCCCHHHHHHHHHHH---------HhCCCCCCCC
Confidence 4589996 2233566777766643 6788888877
No 21
>3pxv_A Nitroreductase; flavoprotein, FMN-dependent, joint center for structural genomics, protein structure initiative, PSI-biology; HET: MSE FMN; 2.30A {Desulfitobacterium hafniense}
Probab=36.94 E-value=21 Score=27.05 Aligned_cols=34 Identities=15% Similarity=0.265 Sum_probs=21.8
Q ss_pred ccccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 124 SKTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 124 Sk~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
-++.|+|+ ..+=.++.|++-|+.. +.||.+.+.|
T Consensus 13 RrSvR~f~-~~~v~~e~l~~il~aa---------~~APs~~n~q 46 (189)
T 3pxv_A 13 RYSCRDFK-NEMPSDELLQAIAEAA---------IQAPSGMNRQ 46 (189)
T ss_dssp CCCCCCBC-SCCCCHHHHHHHHHHH---------TTCCCGGGCC
T ss_pred CeehhcCC-CCCCCHHHHHHHHHHH---------HhCCCCCCCC
Confidence 35689996 3333567777777642 4677777665
No 22
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=36.87 E-value=16 Score=26.61 Aligned_cols=38 Identities=11% Similarity=0.087 Sum_probs=30.7
Q ss_pred eeEEEEeeEecCCCCCCchhHHHHHHHhhhcC-CCCCcc
Q psy6131 45 AWIVVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTTR 82 (225)
Q Consensus 45 avivv~I~~WeGip~~~ad~lY~eLt~~L~~~-G~pT~R 82 (225)
.+.+|-|-+.+|..++.-.+||.+|++.|.+. |.|-+|
T Consensus 56 ~~~~i~I~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~ 94 (119)
T 2os5_A 56 PVAVIKVESIGALSADDNIRHTQKITQFCQDTLKLPKDK 94 (119)
T ss_dssp SCEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred CeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCccc
Confidence 33445555788999999999999999999987 988765
No 23
>3ek3_A Nitroreductase; YP_211706.1, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: FMN MPD; 1.70A {Bacteroides fragilis nctc 9343}
Probab=36.00 E-value=23 Score=26.87 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=21.1
Q ss_pred ccccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 124 SKTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 124 Sk~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
-++.|+|+ ..+=.++.|++-|+.- +.||.+++.|
T Consensus 14 RrSiR~f~-~~~v~~e~l~~il~aa---------~~APs~~n~q 47 (190)
T 3ek3_A 14 RRSVRAYD-RKQIPADDLNAILEAG---------AYAPSGMHYE 47 (190)
T ss_dssp CCBCCCBC-SCCCCHHHHHHHHHHH---------HTSCCGGGCC
T ss_pred chhhhcCC-CCCCCHHHHHHHHHHH---------HhCCCcCCCC
Confidence 34689996 3333566777766543 5677776655
No 24
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=35.30 E-value=18 Score=24.84 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=29.4
Q ss_pred EEEeeEecCCCCCCchhHHHHHHHhhhcC-CCCCcc
Q psy6131 48 VVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTTR 82 (225)
Q Consensus 48 vv~I~~WeGip~~~ad~lY~eLt~~L~~~-G~pT~R 82 (225)
+|-|-+++|-+.+.-..||..|++.|.+. |.|-+.
T Consensus 3 ~I~I~~~~Grs~eqK~~L~~~it~~l~~~lg~p~~~ 38 (76)
T 3ej9_A 3 MISCDMRYGRTDEQKRALSAGLLRVISEATGEPREN 38 (76)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHHCcCccc
Confidence 45677889999999999999999999885 988643
No 25
>3eo8_A BLUB-like flavoprotein; YP_001089088.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.74A {Clostridium difficile 630}
Probab=35.23 E-value=24 Score=27.14 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=21.0
Q ss_pred cccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 125 KTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 125 k~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
++.|+|. ..+=.++.|++.|+.- ++||.+.+.|
T Consensus 12 rSiR~f~-~~~v~~e~l~~il~aa---------~~APS~~n~Q 44 (219)
T 3eo8_A 12 QSVRKFK-NQDVSDEDILKMIKAA---------GAAPSGKNIQ 44 (219)
T ss_dssp CBCCCBC-SCCCCHHHHHHHHHHH---------HTSCCGGGCC
T ss_pred eehhccC-CCCCCHHHHHHHHHHH---------HhCCCCCCCC
Confidence 4589997 3333677777776643 3577766655
No 26
>3m5k_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structural genomics, joint center for structural genomics; HET: MSE FMN; 1.86A {Parabacteroides distasonis}
Probab=34.91 E-value=25 Score=26.52 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=23.1
Q ss_pred cccccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 123 RSKTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 123 rSk~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
+-++.|+|. ..+=.++.|++.|+.. +.||.+++.|
T Consensus 14 ~RrSvR~f~-~~~v~~e~l~~il~aa---------~~APS~~n~q 48 (172)
T 3m5k_A 14 NRKSVRKYK-DRPVEKEKIDKLIRAG---------MAAPSSRDRR 48 (172)
T ss_dssp HCCCCCCBC-SSCCCHHHHHHHHHHH---------HTSCCGGGCC
T ss_pred hCccccCcC-CCCCCHHHHHHHHHHH---------HhCcCcCCCC
Confidence 345689997 4333677777766633 3788888777
No 27
>2jry_A R11.6, I-superfamily conotoxin R11A; IOTA-conotoxin; HET: HYP DPN; NMR {Conus radiatus} PDB: 2p4l_A* 2jtu_A*
Probab=34.72 E-value=7.1 Score=26.95 Aligned_cols=8 Identities=50% Similarity=1.157 Sum_probs=7.3
Q ss_pred cceeeeee
Q psy6131 109 GCSWSMYY 116 (225)
Q Consensus 109 GcsWsmY~ 116 (225)
|||||||+
T Consensus 37 gcst~~f~ 44 (46)
T 2jry_A 37 GCSTSSFF 44 (46)
T ss_dssp SCCCCTTS
T ss_pred CCcccceE
Confidence 89999986
No 28
>3n4h_A Putative tautomerase; CG10062, CIS-3-chloroacrylic acid dehalogenase, tautomerase superfamily, beta-alpha-beta motif, hydrolase; HET: PR7; 2.02A {Corynebacterium glutamicum} PDB: 3n4d_A* 3n4g_A
Probab=34.18 E-value=19 Score=27.19 Aligned_cols=38 Identities=21% Similarity=0.271 Sum_probs=31.9
Q ss_pred eeEEEEeeEecCCCCCCchhHHHHHHHhhhcC-CCCCcc
Q psy6131 45 AWIVVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTTR 82 (225)
Q Consensus 45 avivv~I~~WeGip~~~ad~lY~eLt~~L~~~-G~pT~R 82 (225)
+.++|-|.+.+|.+.+.-.+||..|++.|.+. |.|-.+
T Consensus 61 ~~~~I~i~~~~Grt~eqk~~l~~~l~~~l~~~lgi~~~~ 99 (148)
T 3n4h_A 61 NHIWVQATIRSGRTEKQKEELLLRLTQEIALILGIPNEE 99 (148)
T ss_dssp TCEEEEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGG
T ss_pred cEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHhCcCcCc
Confidence 56777788889998888899999999999986 888543
No 29
>3bm1_A Protein YDJA, nitroreductase; oxidoreductase; HET: FMN; 2.00A {Escherichia coli} PDB: 3bm2_A
Probab=34.00 E-value=25 Score=26.00 Aligned_cols=23 Identities=0% Similarity=0.208 Sum_probs=13.8
Q ss_pred ccccceeeccCchhHHHHHHHHHH
Q psy6131 124 SKTVRKFRLSVRSEEQEIEEKMHL 147 (225)
Q Consensus 124 Sk~prkfrl~~~~eE~~le~~lq~ 147 (225)
.++.|+|. ...-.++.|++-|+.
T Consensus 10 RrS~R~f~-~~~v~~e~l~~il~a 32 (183)
T 3bm1_A 10 RRSASRLA-EPAPTGEQLQNILRA 32 (183)
T ss_dssp CCCCCCEE-SCCCCHHHHHHHHHH
T ss_pred CcChhhcC-CCCcCHHHHHHHHHH
Confidence 35689997 333345667766653
No 30
>3e10_A Putative NADH oxidase; NP_348178.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE FMN EPE; 1.40A {Clostridium acetobutylicum}
Probab=33.91 E-value=26 Score=26.15 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=22.1
Q ss_pred ccccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 124 SKTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 124 Sk~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
-++.|+|. ..+-.++.|++.|+.- +.||.+++.|
T Consensus 8 RrS~R~f~-~~~v~~e~l~~il~aa---------~~APs~~n~q 41 (168)
T 3e10_A 8 RRSIRNYK-GKKVEKEKIEKLLRAA---------MQAPSAGNQQ 41 (168)
T ss_dssp CCBCCCBC-SSCCCHHHHHHHHHHH---------HTSCCGGGCC
T ss_pred ccccccCC-CCCCCHHHHHHHHHHH---------HhCCCcCCCC
Confidence 34689996 2233566777766543 4788888776
No 31
>3kwk_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structur genomics, joint center for structural genomics, JCSG; HET: MSE FMN; 1.54A {Bacteroides thetaiotaomicron vpi-5482}
Probab=33.74 E-value=24 Score=26.78 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=23.3
Q ss_pred ccccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 124 SKTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 124 Sk~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
-++.|+|. ..+-.++.|++.|+.. +.||.+++.|
T Consensus 19 RrSvR~f~-~~~v~~e~l~~il~aa---------~~APs~~n~q 52 (175)
T 3kwk_A 19 RKSVRTYL-NKGVEKEKIDLMLRAG---------MSAPSGKDVR 52 (175)
T ss_dssp CCBCCCBC-SCCCCHHHHHHHHHHH---------TTSCCGGGCC
T ss_pred CcCccCCC-CCCCCHHHHHHHHHHH---------HHCcCccCCC
Confidence 45689997 3333677787777643 3788888777
No 32
>3h4o_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.50A {Clostridium difficile 630} PDB: 3koq_A*
Probab=33.01 E-value=27 Score=27.36 Aligned_cols=35 Identities=17% Similarity=0.396 Sum_probs=23.1
Q ss_pred cccccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 123 RSKTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 123 rSk~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
+-++.|+|. ..+=.++.|++.|+.. ++||.+++-|
T Consensus 28 ~RrSvR~f~-~~~v~~e~l~~il~aa---------~~APS~~n~Q 62 (191)
T 3h4o_A 28 KRYSCRNYQ-DRKVEKEKLEKVLDVA---------RIAPTGGNRQ 62 (191)
T ss_dssp HCCBCCCBC-SCCCCHHHHHHHHHHH---------HHSCCGGGCC
T ss_pred hCccccccC-CCCCCHHHHHHHHHHH---------HhCcCcCCCc
Confidence 445789996 3333677777766543 5688887766
No 33
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=32.87 E-value=25 Score=21.80 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=29.4
Q ss_pred EEEeeEecCCCCCCchhHHHHHHHhhhcC-CCCCccc
Q psy6131 48 VVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTTRR 83 (225)
Q Consensus 48 vv~I~~WeGip~~~ad~lY~eLt~~L~~~-G~pT~RR 83 (225)
+|-|-++.|.+.+.-..|..+|++.|.+. |.|-++.
T Consensus 5 ~i~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~p~~~v 41 (63)
T 2x4k_A 5 IVNVKLLEGRSDEQLKNLVSEVTDAVEKTTGANRQAI 41 (63)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccE
Confidence 34567789998888889999999999987 9987654
No 34
>4dn2_A Nitroreductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgrc; HET: FMN; 1.50A {Geobacter metallireducens} PDB: 4g8s_A*
Probab=32.52 E-value=27 Score=27.34 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=22.6
Q ss_pred cccccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 123 RSKTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 123 rSk~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
.-++.|+|. ..+=.++.|++.|+.. +.||.+++-|
T Consensus 31 ~RrSvR~f~-~~~v~~e~l~~il~aa---------~~APS~~n~Q 65 (208)
T 4dn2_A 31 TRRSVRKFS-DRPVEPEKLRAVLDAA---------RLAPSWANMQ 65 (208)
T ss_dssp HCCBCCCBC-CCCCCHHHHHHHHHHH---------HTSCCGGGCC
T ss_pred hCccccCCC-CCCCCHHHHHHHHHHH---------HHCcCcCCCC
Confidence 344689997 3333567777776643 4677777666
No 35
>2wqf_A Copper induced nitroreductase D; COPR regulated protein, oxidoreductase; HET: FMN; 1.35A {Lactococcus lactis}
Probab=29.96 E-value=44 Score=24.92 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=21.5
Q ss_pred cccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 125 KTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 125 k~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
++.|+|.=..+ .++.|++.|+.. .+.||.+++-|
T Consensus 11 rSvR~f~~~~~-~~e~l~~il~aa--------~~~APS~~n~Q 44 (202)
T 2wqf_A 11 RTIYALGRNVQ-DEEKVIETIKEA--------VRFSPTAFNSQ 44 (202)
T ss_dssp CBCCCEECCCS-CHHHHHHHHHHH--------HHTSCCGGGCC
T ss_pred hhHHhcCCCCC-CHHHHHHHHHHH--------HHhCCCccCCC
Confidence 56899976534 666777776642 14566666554
No 36
>3g14_A Nitroreductase family protein; structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: MSE; 1.75A {Clostridium novyi}
Probab=28.40 E-value=35 Score=26.28 Aligned_cols=34 Identities=15% Similarity=0.290 Sum_probs=22.5
Q ss_pred ccccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 124 SKTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 124 Sk~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
-++.|+|. ..+=.++.|+..|+.. +.||.+++.|
T Consensus 11 RrSvR~f~-~~~v~~e~l~~il~aa---------~~aPS~~n~q 44 (193)
T 3g14_A 11 RKSIKKFE-QTAIDRDKLLKIIDMA---------MRAPSWKNKT 44 (193)
T ss_dssp CCBCCCBC-CCCCCHHHHHHHHHHH---------HTCCCGGGCC
T ss_pred CcchhcCC-CCCCCHHHHHHHHHHH---------HHCcCccCCC
Confidence 35689996 2233566777766643 4788888777
No 37
>2fre_A NAD(P)H-flavin oxidoreductase; FMN, structural genomics, PSI, protein struc initiative, midwest center for structural genomics; HET: FMN; 1.90A {Agrobacterium tumefaciens str} SCOP: d.90.1.1
Probab=28.40 E-value=36 Score=26.24 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=22.7
Q ss_pred cccccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 123 RSKTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 123 rSk~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
..++.|+|.= .+-.++.|++.|+.. ++||.+++-|
T Consensus 19 ~RrS~R~f~~-~~v~~e~l~~il~aa---------~~APS~~n~Q 53 (200)
T 2fre_A 19 DRWSPRAFDG-SPMPKEHLLTILDAA---------HWAPSASNHQ 53 (200)
T ss_dssp HCCCCCCBCC-CCCCHHHHHHHHHHH---------HTCCCGGGCC
T ss_pred hCcCccccCC-CCCCHHHHHHHHHHH---------HhCcCcCCCC
Confidence 3456899973 223566677776642 5788888776
No 38
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=28.25 E-value=37 Score=25.94 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=26.7
Q ss_pred eEEEEeeEecCCCCCCchhHHHHHHHhhhcC-CCCCccc
Q psy6131 46 WIVVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTTRR 83 (225)
Q Consensus 46 vivv~I~~WeGip~~~ad~lY~eLt~~L~~~-G~pT~RR 83 (225)
+.+|-|.+-.|++++.-.+++..|++.|.+. |+|-+|-
T Consensus 78 ~a~v~i~sig~~t~e~n~~~s~~i~~~l~~~Lgi~~~ri 116 (135)
T 3t5s_A 78 CCFVDFYCIGVISQAKNPSISAAITGCLTQHFKVKPERV 116 (135)
T ss_dssp CEEEEEECCC-----CCHHHHHHHHHHHHHHHCCCGGGE
T ss_pred EEEEEEEEEEEEeccCCchHHHHHHHHHHHhcccCccEE
Confidence 3445566678899999999999999999998 9998763
No 39
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=27.80 E-value=24 Score=23.21 Aligned_cols=34 Identities=12% Similarity=0.054 Sum_probs=27.9
Q ss_pred EEEeeEec---CCCCCCchhHHHHHHHhhhcC-CCCCc
Q psy6131 48 VVVIVAWE---GVPLNQSDGVYAILTNKLNKY-GLPTT 81 (225)
Q Consensus 48 vv~I~~We---Gip~~~ad~lY~eLt~~L~~~-G~pT~ 81 (225)
+|=|-+++ |.+.+.-..||.+|++.|.+. |.|-.
T Consensus 2 ~i~I~~~~~~~grs~eqK~~l~~~lt~~l~~~lg~p~~ 39 (67)
T 3m21_A 2 FINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKA 39 (67)
T ss_dssp EEEEEECCBTTBSCHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred EEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHCcCcc
Confidence 35567787 899999999999999999875 88743
No 40
>3b4q_A Uncharacterized protein; APC90667.1, conserved protein domain, structural genomics, PSI-2, protein structure initiative; 1.55A {Corynebacterium diphtheriae NCTC13129}
Probab=27.75 E-value=25 Score=27.10 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=14.3
Q ss_pred chhHHHHHHHhhhcCCCCC
Q psy6131 62 SDGVYAILTNKLNKYGLPT 80 (225)
Q Consensus 62 ad~lY~eLt~~L~~~G~pT 80 (225)
.|.+|..++++|.+||+.-
T Consensus 44 VD~~y~~v~~~l~~~Gi~V 62 (94)
T 3b4q_A 44 VDALYNAIKVRLAGTGLGI 62 (94)
T ss_dssp HHHHHHHHHHHHHC---CC
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 5899999999999999863
No 41
>2i7h_A Nitroreductase-like family protein; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE FMN; 2.30A {Bacillus cereus}
Probab=27.00 E-value=38 Score=25.46 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=20.3
Q ss_pred ccccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 124 SKTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 124 Sk~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
.++.|+|. ..+-.++.|++.|+.. +.||.+++.|
T Consensus 17 RrS~R~f~-~~~v~~e~l~~il~aa---------~~APS~~n~q 50 (189)
T 2i7h_A 17 RRSVRTFT-DKAVEKDLLIELLNDA---------TWAPNHKHRE 50 (189)
T ss_dssp CCBCCCCC-SCCCCHHHHHHHHHHH---------TTSCCGGGCC
T ss_pred cccHhhhC-CCCcCHHHHHHHHHHH---------HhCCCCCCcC
Confidence 34689887 2222456677666532 4677776666
No 42
>2wzv_A NFNB protein; nitroreductase, oxidoreductase; HET: MSE FMN; 1.75A {Mycobacterium smegmatis} PDB: 2wzw_A*
Probab=26.84 E-value=38 Score=26.06 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=21.4
Q ss_pred ccccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 124 SKTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 124 Sk~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
.++.|+|.= .+=.++.|++.|+.. ++||.+++-|
T Consensus 26 RrSvR~f~~-~~v~~e~l~~il~aa---------~~APS~~n~Q 59 (235)
T 2wzv_A 26 RRAVRAFRP-DEVPEETMRAVFELA---------GHAPSNSNTQ 59 (235)
T ss_dssp CCBCCCBCS-CCCCHHHHHHHHHHH---------TTCCCGGGCC
T ss_pred CceecCCCC-CCCCHHHHHHHHHHH---------HhCCcccCCC
Confidence 346899962 222566677766543 5677777776
No 43
>3gag_A Putative NADH dehydrogenase, NADPH nitroreductase; FMN-dependent nitroreductase-like fold, structural genomics; HET: MSE FMN; 1.70A {Streptococcus mutans} SCOP: d.90.1.0
Probab=26.66 E-value=40 Score=25.77 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=21.0
Q ss_pred ccccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 124 SKTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 124 Sk~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
-++.|+|.=..+=.++.|++.|+.. ++||.+++.|
T Consensus 13 RrSvR~f~~~~~v~~e~l~~il~aa---------~~APS~~n~Q 47 (206)
T 3gag_A 13 RVSVRRFDPDAVLPNDLIKDMLEHA---------SYAPSGNNFQ 47 (206)
T ss_dssp CCBCCCBCTTCCCCHHHHHHHHHHH---------TTSCCGGGCC
T ss_pred hhhhhccCCCCCCCHHHHHHHHHHH---------HHCCCCCCCC
Confidence 3468998633222566677776532 5666666655
No 44
>1vfr_A NAD(P)H\:FMN oxidoreductase; bioluminescence; HET: FMN; 1.80A {Aliivibrio fischeri} SCOP: d.90.1.1 PDB: 1v5y_A* 1v5z_A*
Probab=26.63 E-value=40 Score=25.65 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=21.4
Q ss_pred cccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 125 KTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 125 k~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
++.|+|.-..+=.++.|++-|+.. ++||.+++.|
T Consensus 13 rSvR~f~~~~~v~~e~l~~il~aa---------~~APS~~n~Q 46 (218)
T 1vfr_A 13 YTSKKYDPSKKVSQEDLAVLLEAL---------RLSASSINSQ 46 (218)
T ss_dssp CBCSSBCTTCCCCHHHHHHHHHHH---------HTCCCGGGCC
T ss_pred hhhhhcCCCCCCCHHHHHHHHHHH---------HhCcccCCCC
Confidence 468998632222466677766543 4688887777
No 45
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=26.59 E-value=26 Score=22.86 Aligned_cols=31 Identities=10% Similarity=0.210 Sum_probs=25.6
Q ss_pred EEeeEecCCCCCCchhHHHHHHHhhhcC-CCCC
Q psy6131 49 VVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPT 80 (225)
Q Consensus 49 v~I~~WeGip~~~ad~lY~eLt~~L~~~-G~pT 80 (225)
|-|-+ +|.+.+.-..||.+||+.|.+. |.|-
T Consensus 3 I~I~~-~grt~eqK~~L~~~it~~~~~~lg~~~ 34 (62)
T 3m20_A 3 LIVYG-PKLDVGKKREFVERLTSVAAEIYGMDR 34 (62)
T ss_dssp EEEEC-SCCCHHHHHHHHHHHHHHHHHHHTCCT
T ss_pred EEEEE-CCCCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 34445 8999999999999999999885 8874
No 46
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=26.41 E-value=26 Score=21.62 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=8.3
Q ss_pred chhHHHHHHH
Q psy6131 62 SDGVYAILTN 71 (225)
Q Consensus 62 ad~lY~eLt~ 71 (225)
||.||.||.+
T Consensus 3 adelykeled 12 (27)
T 3twe_A 3 ADELYKELED 12 (27)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7999999764
No 47
>3gr3_A Nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: MSE FMN UNL; 1.45A {Bartonella henselae str}
Probab=25.72 E-value=41 Score=26.40 Aligned_cols=33 Identities=30% Similarity=0.409 Sum_probs=22.0
Q ss_pred cccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 125 KTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 125 k~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
++.|+|+ ..+=.++.|++.|+.. ++||.+.+-|
T Consensus 17 RSvR~f~-~~pV~~e~l~~il~aA---------~~APS~~N~Q 49 (230)
T 3gr3_A 17 KSIRAFT-DQPVTQETIREILKLA---------ARAPSGTNLQ 49 (230)
T ss_dssp CBCCCBC-SCCCCHHHHHHHHHHH---------TTSCCGGGCC
T ss_pred eehhccC-CCCCCHHHHHHHHHHH---------HhCcCcCCCC
Confidence 4589996 3333577788777643 4777777776
No 48
>3qdl_A Oxygen-insensitive NADPH nitroreductase; oxidoreductase; HET: FMN; 2.00A {Helicobacter pylori}
Probab=25.64 E-value=43 Score=26.01 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=20.5
Q ss_pred ccccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 124 SKTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 124 Sk~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
-++.|+|.=...=.++.|++-|+.. ++||.+++.|
T Consensus 16 RrSvR~f~~~~~V~~e~l~~ileaa---------~~APS~~N~Q 50 (210)
T 3qdl_A 16 RHSCKMFDSHYEFSSTELEEIAEIA---------RLSPSSYNTQ 50 (210)
T ss_dssp SCBCCCBCTTCCCCHHHHHHHHHHH---------HTCCCGGGCC
T ss_pred chhHhhcCCCCCCCHHHHHHHHHHH---------HhCcCcCCCC
Confidence 3468999633323566787777632 3555555554
No 49
>3ge6_A Nitroreductase; structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: FMN; 1.85A {Exiguobacterium sibiricum 255-15} SCOP: d.90.1.0
Probab=24.25 E-value=47 Score=25.50 Aligned_cols=35 Identities=20% Similarity=0.443 Sum_probs=21.6
Q ss_pred ccccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 124 SKTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 124 Sk~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
-++.|+|.=..+=.++.|++.|+.. ++||.+++-|
T Consensus 17 RrSvR~f~~~~~v~~e~l~~ileaa---------~~APS~~N~Q 51 (212)
T 3ge6_A 17 RRSIRNYDTNVKISKEEMTQILEEA---------TLAPSSVNMQ 51 (212)
T ss_dssp CCBCCCBCTTCCCCHHHHHHHHHHH---------TTSCCGGGCC
T ss_pred hHhHHhcCCCCCCCHHHHHHHHHHH---------HHCcCcCCCC
Confidence 3468999632222566777777643 4677777666
No 50
>3b71_D T-cell surface glycoprotein CD4; four-helix bundle, protein-protein complex, ATP-binding, CEL junction, kinase, nucleotide-binding, phosphorylation; 2.82A {Homo sapiens}
Probab=24.13 E-value=17 Score=22.43 Aligned_cols=12 Identities=33% Similarity=0.744 Sum_probs=9.7
Q ss_pred cCCCcccccccC
Q psy6131 86 TNEPRTCACQGL 97 (225)
Q Consensus 86 ~Ne~rtCaCQG~ 97 (225)
+.|++||.||--
T Consensus 12 L~ekKTCqC~~~ 23 (26)
T 3b71_D 12 LSEKKTCQCPHR 23 (26)
T ss_pred HhhcccccCCcc
Confidence 568899999854
No 51
>1icr_A Oxygen-insensitive NAD(P)H nitroreductase; alpha-beta, oxidoreductase; HET: FMN; 1.70A {Escherichia coli} SCOP: d.90.1.1 PDB: 1ds7_A* 1icu_A* 1icv_A* 1idt_A* 1oo5_A* 1oo6_A* 1oon_A* 1ooq_A* 1yki_A* 1ylr_A* 1ylu_A* 3hzn_A* 1kqb_A* 1kqc_A* 1kqd_A* 1nec_A*
Probab=23.31 E-value=51 Score=24.92 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=20.4
Q ss_pred cccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 125 KTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 125 k~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
++.|+|.=..+=.++.|++-|+.. ++||.+++-|
T Consensus 11 rSvR~f~~~~~v~~e~l~~il~aa---------~~APS~~n~Q 44 (217)
T 1icr_A 11 HSTKAFDASKKLTPEQAEQIKTLL---------QYSPSSTNSQ 44 (217)
T ss_dssp CBCSCBCTTCCCCHHHHHHHHHHH---------HHCCCGGGCC
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHH---------HHCccccCCC
Confidence 468998632222455666665542 4677777776
No 52
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=23.21 E-value=37 Score=23.00 Aligned_cols=36 Identities=11% Similarity=0.026 Sum_probs=29.2
Q ss_pred EEEeeEecCC-CCCCchhHHHHHHHhhhcC-CCCCccc
Q psy6131 48 VVVIVAWEGV-PLNQSDGVYAILTNKLNKY-GLPTTRR 83 (225)
Q Consensus 48 vv~I~~WeGi-p~~~ad~lY~eLt~~L~~~-G~pT~RR 83 (225)
+|-|-+++|- +.+.-.+|+..|++.|.+. |.|-++.
T Consensus 2 ~I~I~l~~Grls~eqk~~L~~~l~~~l~~~lgip~~~v 39 (76)
T 1gyx_A 2 HIDIKCFPRELDEQQKAALAADITDVIIRHLNSKDSSI 39 (76)
T ss_dssp EEEEEESCCCCCHHHHHHHHHHHHHHHHHHHTCCGGGC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHhCcCCceE
Confidence 3556678886 8889999999999999985 9887643
No 53
>3bem_A Putative NAD(P)H nitroreductase YDFN; 2632848, putative nitroreductase YDFN, structural genomics, center for structural genomics, JCSG; HET: MSE FMN; 1.65A {Bacillus subtilis}
Probab=22.92 E-value=49 Score=25.63 Aligned_cols=35 Identities=29% Similarity=0.465 Sum_probs=21.3
Q ss_pred ccccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 124 SKTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 124 Sk~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
.++.|+|.=+.+=.++.|++.|+.. ++||.+++-|
T Consensus 23 RrSvR~f~~~~~V~~e~l~~il~aa---------~~APS~~N~Q 57 (218)
T 3bem_A 23 RRSASNFLSGHPITKEDLNEMFELV---------ALAPSAFNLQ 57 (218)
T ss_dssp CCCCSCCCSSCCCCHHHHHHHHHHH---------TTSCCGGGCC
T ss_pred CchhhccCCCCCCCHHHHHHHHHHH---------HHCcCcCCCC
Confidence 3468999632222566677766642 5677777665
No 54
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=22.77 E-value=52 Score=25.02 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=30.6
Q ss_pred eEEEEeeEecCCCCCCchhHHHHHHHhhhcC-CCCCcc
Q psy6131 46 WIVVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTTR 82 (225)
Q Consensus 46 vivv~I~~WeGip~~~ad~lY~eLt~~L~~~-G~pT~R 82 (225)
..++-|.+-.++.++.-.+++..|.+.|.+. |+|-+|
T Consensus 78 ~a~v~i~sig~~~~e~n~~~s~~i~~~l~~~LgI~~~r 115 (133)
T 3fwu_A 78 VACVRVEALGGYGPSEPEKVTSIVTAAITKECGIVADR 115 (133)
T ss_dssp CEEEEEECTTCCCTTHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcChhh
Confidence 3445566678899988899999999999998 999876
No 55
>2h0u_A NADPH-flavin oxidoreductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: FMN; 1.90A {Helicobacter pylori}
Probab=21.26 E-value=59 Score=24.73 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=21.6
Q ss_pred cccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 125 KTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 125 k~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
++.|+|.-..+=.++.|++-|+.. ++||.+++-|
T Consensus 14 rS~R~f~~~~~v~~e~l~~il~aa---------~~APS~~n~Q 47 (217)
T 2h0u_A 14 FAAKKYDPNRRISQKDWEALVEVG---------RLAPSSIGLE 47 (217)
T ss_dssp CBCCCBCTTCCCCHHHHHHHHHHH---------HTCCCGGGCC
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHH---------hhCCcccCCC
Confidence 468998633222456677666542 5788888777
No 56
>3gb5_A IYD-1, iodotyrosine dehalogenase 1; iodide salvage, flavoprotein, FMN, membrane, NADP, oxidoreductase, transmembrane; HET: FMN; 2.00A {Mus musculus} PDB: 3gfd_A* 3gh8_A* 3tnz_A* 3to0_A*
Probab=20.85 E-value=55 Score=27.46 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=21.0
Q ss_pred ccccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 124 SKTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 124 Sk~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
.++.|+|. ...-.++.|++.|+.. +.||.+++.|
T Consensus 64 RRSvR~f~-~~~v~~e~l~~il~aa---------~~APS~~n~Q 97 (259)
T 3gb5_A 64 RRSVRFIS-SEHVPMEVIENVIKAA---------GTAPSGAHTE 97 (259)
T ss_dssp CCCCSCBC-CCCCCHHHHHHHHHHH---------TTSCCGGGCC
T ss_pred CcchhhcC-CCCCCHHHHHHHHHHH---------HHCCCcCCCC
Confidence 34689997 3333677788777643 3566555544
No 57
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.84 E-value=98 Score=21.70 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=25.3
Q ss_pred HHHHHHhHHHHHhhhCch--------------hhhchhh-hhccCCccccCCcCCCCcce
Q psy6131 145 MHLLATTISPLYKALAPG--------------AFTNQCQ-FEREASECRLGFKPGRPFSG 189 (225)
Q Consensus 145 lq~LAT~laPlYk~lAP~--------------Ay~NQv~-~E~~a~dCRLG~k~gRPFSG 189 (225)
+..++..|+-.++.|.+. .|..++. |... .=++-+++|.|+||
T Consensus 35 ~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~--~~~~~~k~~~p~~~ 92 (92)
T 2cs1_A 35 LEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQ--ESQMSLKDSGPSSG 92 (92)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTST--TTCCCCCCCCCCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCCCCCCCCCCC
Confidence 345666666666666543 3444443 3322 23456799999998
No 58
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=20.74 E-value=60 Score=24.61 Aligned_cols=35 Identities=17% Similarity=0.365 Sum_probs=28.3
Q ss_pred EEEeeEecCCCCCCchhHHHHHHHhhhcC-CCCCcc
Q psy6131 48 VVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTTR 82 (225)
Q Consensus 48 vv~I~~WeGip~~~ad~lY~eLt~~L~~~-G~pT~R 82 (225)
+|-|.+-.+++++.-.+++.+|++.|.+. |+|-+|
T Consensus 80 ~v~v~sig~~~~e~n~~~s~~i~~~l~~~LgI~~~r 115 (133)
T 3fwt_A 80 YVRVESWGEYAPSKPKMMTPRIAAAITKECGIPAER 115 (133)
T ss_dssp EEEEEEEECCCTHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcChhh
Confidence 33344447899888899999999999988 999876
No 59
>3n2s_A NADPH-dependent nitro/flavin reductase; alpga-beta-alpha sandwich, oxidoreductase; HET: FMN; 1.95A {Bacillus subtilis} SCOP: d.90.1.0
Probab=20.74 E-value=59 Score=26.58 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=22.1
Q ss_pred ccccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 124 SKTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 124 Sk~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
-++.|+|. ..+=.++.|+..|+.. +.||.+.+.|
T Consensus 11 RRSiR~F~-~~~V~~e~L~~il~aA---------~~APS~~N~Q 44 (249)
T 3n2s_A 11 HRSIRSFT-DQLLTAEEIDTLVKSA---------QAASTSSYVQ 44 (249)
T ss_dssp CCCCCCBC-SCCCCHHHHHHHHHHH---------HTSCCGGGCC
T ss_pred CcccccCC-CCCCCHHHHHHHHHHH---------HhCCCCCCCc
Confidence 34689997 3333677787777643 4677776655
No 60
>2v1l_A Hypothetical protein; pathogenicity island, unknown function; 2.13A {Vibrio cholerae}
Probab=20.34 E-value=32 Score=27.94 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=26.5
Q ss_pred EecCCCCCCchhHHHHHHHhhhcCCC-----CCccccccC
Q psy6131 53 AWEGVPLNQSDGVYAILTNKLNKYGL-----PTTRRCATN 87 (225)
Q Consensus 53 ~WeGip~~~ad~lY~eLt~~L~~~G~-----pT~RRC~~N 87 (225)
.=.+.+.|++++|++-|.+.|.++.. .+.+|.++|
T Consensus 5 ~~~~~~Lpvs~~l~~lL~~~l~~~~~~~~~~~~~~~ltlN 44 (148)
T 2v1l_A 5 LFKPTHLPISKPFHALLANILSEHQAKSEVQATSKEVVMN 44 (148)
T ss_dssp CBCCCSSCCCHHHHHHHHHHHHHHHC---------CEEEE
T ss_pred ccCCccccccHHHHHHHHHHHHhccccccCcccCcEEEEE
Confidence 34677899999999999999998865 456788887
Done!