Query psy6131
Match_columns 225
No_of_seqs 52 out of 54
Neff 2.5
Searched_HMMs 13730
Date Fri Aug 16 18:26:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6131.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6131hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2apla1 a.258.1.1 (A:2-150) Hy 66.1 1.4 0.0001 34.7 2.2 22 60-81 124-149 (149)
2 d1mwwa_ d.80.1.4 (A:) Hypothet 63.3 1.7 0.00012 30.6 2.1 40 43-82 56-96 (120)
3 d1otfa_ d.80.1.1 (A:) 4-oxaloc 54.6 2.9 0.00021 26.3 1.9 33 48-80 2-35 (59)
4 d1s0ya_ d.80.1.1 (A:) Trans-3- 40.7 6.4 0.00047 24.9 1.9 33 48-80 2-35 (62)
5 d2ifaa1 d.90.1.1 (A:2-200) Hyp 39.2 11 0.00083 26.9 3.3 35 125-167 11-45 (199)
6 d2aala1 d.80.1.6 (A:1-129) Mal 38.7 14 0.00099 26.5 3.7 37 43-80 62-99 (129)
7 d1pdaa1 c.94.1.1 (A:3-219) Por 36.7 8.8 0.00064 30.7 2.5 29 194-222 73-102 (217)
8 d1emxa_ g.3.6.2 (A:) Heteropda 30.3 7.5 0.00055 23.2 0.8 11 100-111 1-11 (30)
9 d2olra2 c.109.1.1 (A:6-227) Ph 26.5 14 0.00099 29.7 2.0 50 1-76 51-107 (222)
10 d1m53a1 b.71.1.1 (A:521-598) I 25.2 15 0.0011 23.1 1.7 16 19-34 14-29 (78)
11 d1ahla_ g.9.1.1 (A:) Anthopleu 25.1 16 0.0012 23.8 1.8 30 91-122 3-32 (49)
12 d3d03a1 d.159.1.11 (A:1-271) G 24.3 7.3 0.00053 29.3 -0.1 26 188-215 186-211 (271)
13 d1uoka1 b.71.1.1 (A:480-558) O 23.0 18 0.0013 22.9 1.7 13 27-39 10-22 (79)
14 d1ywqa1 d.90.1.1 (A:2-200) Hyp 22.6 30 0.0022 24.4 3.1 23 124-146 14-36 (199)
15 d2gu3a2 d.17.1.6 (A:34-98) Unc 21.2 15 0.0011 24.6 1.1 26 6-33 36-61 (65)
16 d1vg0a2 d.16.1.6 (A:445-557) R 21.0 13 0.00096 26.5 0.8 9 109-117 98-106 (113)
17 d3gtub1 a.45.1.1 (B:85-224) Cl 20.9 24 0.0018 24.0 2.2 19 128-146 1-20 (140)
18 d1ripa_ b.40.4.5 (A:) Ribosoma 20.8 9.6 0.0007 26.3 -0.0 35 153-189 28-66 (81)
No 1
>d2apla1 a.258.1.1 (A:2-150) Hypothetical protein PG0816 {Porphyromonas gingivalis [TaxId: 837]}
Probab=66.09 E-value=1.4 Score=34.70 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=17.7
Q ss_pred CCchhHHHHHHHh----hhcCCCCCc
Q psy6131 60 NQSDGVYAILTNK----LNKYGLPTT 81 (225)
Q Consensus 60 ~~ad~lY~eLt~~----L~~~G~pT~ 81 (225)
|.-|.||+|||.+ |.+||+||.
T Consensus 124 peyd~LYTELTGtI~l~iEe~gi~~~ 149 (149)
T d2apla1 124 PEYEHLYTELTGTIVLLIESNHLPTI 149 (149)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred cccchhhhhhhhhhhhhhhhcCCCCC
Confidence 3458999999997 568899983
No 2
>d1mwwa_ d.80.1.4 (A:) Hypothetical protein HI1388.1 {Haemophilus influenzae [TaxId: 727]}
Probab=63.33 E-value=1.7 Score=30.60 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=34.1
Q ss_pred cceeEEEEeeEecCCCCCCchhHHHHHHHhhhcC-CCCCcc
Q psy6131 43 STAWIVVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTTR 82 (225)
Q Consensus 43 ~~avivv~I~~WeGip~~~ad~lY~eLt~~L~~~-G~pT~R 82 (225)
....++|-|-++.|.+.+.-.+||+.|++.|.+. |.|-++
T Consensus 56 s~~~~~I~i~~~~grs~eqK~~l~~~lt~~l~~~lgi~~~~ 96 (120)
T d1mwwa_ 56 SDDYTVIEINLMAGRMEGTKKRLIKMLFSELEYKLGIRAHD 96 (120)
T ss_dssp CTTCEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred CCCEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcCe
Confidence 3456788888999999999999999999999876 988554
No 3
>d1otfa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase {Pseudomonas sp., DmpI [TaxId: 306]}
Probab=54.63 E-value=2.9 Score=26.32 Aligned_cols=33 Identities=12% Similarity=0.198 Sum_probs=28.6
Q ss_pred EEEeeEecCCCCCCchhHHHHHHHhhhcC-CCCC
Q psy6131 48 VVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPT 80 (225)
Q Consensus 48 vv~I~~WeGip~~~ad~lY~eLt~~L~~~-G~pT 80 (225)
+|-|-+|+|-+.+.-.+||.+||+.|.+. |.|-
T Consensus 2 ~I~i~~~~Grs~eqK~~l~~~it~~~~~~~g~~~ 35 (59)
T d1otfa_ 2 IAQLYIIEGRTDEQKETLIRQVSEAMANSLDAPL 35 (59)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCG
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 46678899999899999999999999886 8774
No 4
>d1s0ya_ d.80.1.1 (A:) Trans-3-chloroacrylic acid dehalogenase alpha-subunit, CaaD1 {Pseudomonas pavonaceae [TaxId: 47881]}
Probab=40.68 E-value=6.4 Score=24.91 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=28.0
Q ss_pred EEEeeEecCCCCCCchhHHHHHHHhhhcC-CCCC
Q psy6131 48 VVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPT 80 (225)
Q Consensus 48 vv~I~~WeGip~~~ad~lY~eLt~~L~~~-G~pT 80 (225)
+|-|=+|+|-+.+.-.+|+.+||+.+.+. |.|-
T Consensus 2 ~I~v~~~~Grt~eqK~~l~~~it~~~~~~~g~~~ 35 (62)
T d1s0ya_ 2 MISCDMRYGRTDEQKRALSAGLLRVISEATGEPR 35 (62)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHHHHHHHHCCCG
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 34566799999999999999999999886 8774
No 5
>d2ifaa1 d.90.1.1 (A:2-200) Hypothetical protein Smu.260 {Streptococcus mutans [TaxId: 1309]}
Probab=39.24 E-value=11 Score=26.93 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=20.3
Q ss_pred cccceeeccCchhHHHHHHHHHHHHHhHHHHHhhhCchhhhch
Q psy6131 125 KTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 167 (225)
Q Consensus 125 k~prkfrl~~~~eE~~le~~lq~LAT~laPlYk~lAP~Ay~NQ 167 (225)
++.|+|.-..+=.++.|++.|+ .|+ ++||.+++.|
T Consensus 11 rSvR~f~~~~pV~~e~l~~il~-~A~-------r~APS~~N~Q 45 (199)
T d2ifaa1 11 RSIYALGKTVDLSKAELVALIQ-NAI-------KQAPSAFNSQ 45 (199)
T ss_dssp CCCCCEESCCSSCHHHHHHHHH-HHH-------HTSCCGGGCC
T ss_pred cCccccCCCCCCCHHHHHHHHH-HHH-------hhCCCcCCCc
Confidence 4589997664323556666554 232 4566666655
No 6
>d2aala1 d.80.1.6 (A:1-129) Malonate semialdehyde decarboxylase, MSAD {Pseudomonas pavonaceae [TaxId: 47881]}
Probab=38.73 E-value=14 Score=26.48 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=30.6
Q ss_pred cceeEEEEeeEecCCCCCCchhHHHHHHHhhhcC-CCCC
Q psy6131 43 STAWIVVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPT 80 (225)
Q Consensus 43 ~~avivv~I~~WeGip~~~ad~lY~eLt~~L~~~-G~pT 80 (225)
+.++++|=|+ .+|=+.+.-.+||+.|++.|.+. |.|-
T Consensus 62 s~~~v~I~I~-~~GRs~eqK~~l~~~l~~~l~~~~gi~~ 99 (129)
T d2aala1 62 SSAVVLLTVI-SRPRSEEQKVCFYKLLTGALERDCGISP 99 (129)
T ss_dssp CTTCEEEEEE-ESCCCHHHHHHHHHHHHHHHHHHHCCCG
T ss_pred CCceEEEEEE-eCCCCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 3457888885 59999999999999999999875 8764
No 7
>d1pdaa1 c.94.1.1 (A:3-219) Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=36.74 E-value=8.8 Score=30.74 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=25.7
Q ss_pred hhcccccccccc-CCCCCceEEEEecCCCC
Q psy6131 194 FDFCAHSHRDLH-NMNNGCTVSVVLSNPDS 222 (225)
Q Consensus 194 lDFCAH~HrD~H-Nm~nG~TvVcTLtkedn 222 (225)
.|++-||-||+- .+++|.++++++-|+|.
T Consensus 73 iDiAVHS~KDlP~~~~~~l~i~a~~~R~d~ 102 (217)
T d1pdaa1 73 ADIAVHSMKDVPVEFPQGLGLVTICEREDP 102 (217)
T ss_dssp CSEEEEEGGGSCSCCCTTEEEEEECCCCCC
T ss_pred cceehhhhcccccccCCccccccccccCCc
Confidence 689999999998 67779999999999874
No 8
>d1emxa_ g.3.6.2 (A:) Heteropdatoxin 2, hptx2 {Giant crab spider (Heteropoda venatoria) [TaxId: 152925]}
Probab=30.25 E-value=7.5 Score=23.16 Aligned_cols=11 Identities=64% Similarity=1.455 Sum_probs=8.5
Q ss_pred CccCccccccce
Q psy6131 100 DTCGASFSFGCS 111 (225)
Q Consensus 100 etcGASfSFGcs 111 (225)
+.||.-|| ||+
T Consensus 1 ddcg~lfs-gc~ 11 (30)
T d1emxa_ 1 DDCGKLFS-GCD 11 (30)
T ss_dssp CCCCCTTC-TTC
T ss_pred Cccccccc-cCC
Confidence 35888898 876
No 9
>d2olra2 c.109.1.1 (A:6-227) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}
Probab=26.53 E-value=14 Score=29.73 Aligned_cols=50 Identities=18% Similarity=0.373 Sum_probs=36.0
Q ss_pred CeeeCC-CCCCCCCCccceeeeecCCCCceEEEEEeecCCCcccceeEEEEeeEecCC------CCCCchhHHHHHHHhh
Q psy6131 1 ILYTGK-EGKTTQGCPLAKWVIRRASLEEKLLLIVKHRQGHTCSTAWIVVVIVAWEGV------PLNQSDGVYAILTNKL 73 (225)
Q Consensus 1 vvYTGK-EGKssqGCPiAKWViRRss~eEK~LcLVr~R~GH~C~~avivv~I~~WeGi------p~~~ad~lY~eLt~~L 73 (225)
||+||| .|+| |--|+|++..+.+++| -|..| ..++....|+.|.+..
T Consensus 51 ~v~TG~~TGRS----PkDKfIV~d~~t~d~I----------------------wWG~v~~~~~~N~p~s~e~F~~L~~~~ 104 (222)
T d2olra2 51 AVDTGIFTGRS----PKDKYIVRDDTTRDTF----------------------WWADKGKGKNDNKPLSPETWQHLKGLV 104 (222)
T ss_dssp EECCCSCSSCC----GGGEEEECSTTTTTTS----------------------CCTTSSSSCCSCEEECHHHHHHHHHHH
T ss_pred EEeCCCCCCCC----CCceEEEEecccccce----------------------eeccccccccCCccCCHHHHHHHHHHH
Confidence 467876 5666 7788888888888765 68766 6667766666666666
Q ss_pred hcC
Q psy6131 74 NKY 76 (225)
Q Consensus 74 ~~~ 76 (225)
.+|
T Consensus 105 ~~y 107 (222)
T d2olra2 105 TRQ 107 (222)
T ss_dssp HHH
T ss_pred HHH
Confidence 666
No 10
>d1m53a1 b.71.1.1 (A:521-598) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]}
Probab=25.15 E-value=15 Score=23.14 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=7.7
Q ss_pred eeeecCCCCceEEEEE
Q psy6131 19 WVIRRASLEEKLLLIV 34 (225)
Q Consensus 19 WViRRss~eEK~LcLV 34 (225)
|+.+|..++||+|++.
T Consensus 14 ~aY~R~~~~~~~lVv~ 29 (78)
T d1m53a1 14 YAYTRTLGNERYLVVV 29 (78)
T ss_dssp EEEEEEETTEEEEEEE
T ss_pred EEEEEEcCCeEEEEEE
Confidence 3444555555555444
No 11
>d1ahla_ g.9.1.1 (A:) Anthopleurin-A {Giant green sea anemone (Anthopleura xanthogrammica) [TaxId: 6112]}
Probab=25.11 E-value=16 Score=23.78 Aligned_cols=30 Identities=33% Similarity=0.903 Sum_probs=25.0
Q ss_pred ccccccCCCCccCccccccceeeeeecCceec
Q psy6131 91 TCACQGLDPDTCGASFSFGCSWSMYYNGCKYA 122 (225)
Q Consensus 91 tCaCQG~dpetcGASfSFGcsWsmY~nGcKfa 122 (225)
.|.|....|.+=|++.| |=-| ||+.||.-+
T Consensus 3 ~C~CdsDGP~~rgntLs-GtvW-~~~~gCpsG 32 (49)
T d1ahla_ 3 SCLCDSDGPSVRGNTLS-GTLW-LYPSGCPSG 32 (49)
T ss_dssp CCCCTTCSSSCTTCSSC-SEEE-CSTTSSCTT
T ss_pred cccccCCCCCccCCccc-eEEE-eccCCCcch
Confidence 48899999999999999 8777 677898543
No 12
>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ {Enterobacter aerogenes [TaxId: 548]}
Probab=24.28 E-value=7.3 Score=29.33 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=21.2
Q ss_pred ceecchhhccccccccccCCCCCceEEE
Q psy6131 188 SGVTACFDFCAHSHRDLHNMNNGCTVSV 215 (225)
Q Consensus 188 SGVTaClDFCAH~HrD~HNm~nG~TvVc 215 (225)
++|.++ ||+|.|++.+...+|-+++.
T Consensus 186 ~~v~~v--l~GH~H~~~~~~~~g~~~~~ 211 (271)
T d3d03a1 186 PSLTRI--FCGHNHSLTMTQYRQALIST 211 (271)
T ss_dssp TTEEEE--EECSSSSCEEEEETTEEEEE
T ss_pred CCeEEE--EeCCcchhhceEECCEEEEE
Confidence 466654 79999999999999987664
No 13
>d1uoka1 b.71.1.1 (A:480-558) Oligo-1,6-glucosidase {Bacillus cereus [TaxId: 1396]}
Probab=23.01 E-value=18 Score=22.86 Aligned_cols=13 Identities=8% Similarity=0.082 Sum_probs=6.8
Q ss_pred CceEEEEEeecCC
Q psy6131 27 EEKLLLIVKHRQG 39 (225)
Q Consensus 27 eEK~LcLVr~R~G 39 (225)
+++|++-.|+-.+
T Consensus 10 ~~~V~aY~R~~~~ 22 (79)
T d1uoka1 10 NPSIFAYVRTYGV 22 (79)
T ss_dssp CSSEEEEEEEETT
T ss_pred CCcEEEEEEECCC
Confidence 3455555555544
No 14
>d1ywqa1 d.90.1.1 (A:2-200) Hypothetical oxidoreductase BC1844 {Bacillus cereus [TaxId: 1396]}
Probab=22.56 E-value=30 Score=24.45 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=13.1
Q ss_pred ccccceeeccCchhHHHHHHHHH
Q psy6131 124 SKTVRKFRLSVRSEEQEIEEKMH 146 (225)
Q Consensus 124 Sk~prkfrl~~~~eE~~le~~lq 146 (225)
.++.|+|.-...=.++.|++-|+
T Consensus 14 RrSvR~F~~~~~I~~e~l~~il~ 36 (199)
T d1ywqa1 14 RRSIRKVTKNDAITKERIEEVLK 36 (199)
T ss_dssp CCCCCCEECCTTSCHHHHHHHHH
T ss_pred CCcccccCCCCCCCHHHHHHHHH
Confidence 35688886543324555665554
No 15
>d2gu3a2 d.17.1.6 (A:34-98) Uncharacterized protein YpmB {Bacillus subtilis [TaxId: 1423]}
Probab=21.22 E-value=15 Score=24.61 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=19.6
Q ss_pred CCCCCCCCCccceeeeecCCCCceEEEE
Q psy6131 6 KEGKTTQGCPLAKWVIRRASLEEKLLLI 33 (225)
Q Consensus 6 KEGKssqGCPiAKWViRRss~eEK~LcL 33 (225)
.-|++.+|=||+=||- ..+.+|++++
T Consensus 36 v~G~n~~ge~i~VwVp--~~K~~kv~vk 61 (65)
T d2gu3a2 36 VKGTDKKGTALYVWVP--ADKKAKILSK 61 (65)
T ss_dssp EEEEETTCCEEEEEEE--SSTTSCCEEE
T ss_pred EEeecCCCCEEEEEEe--cCCCCcEEEE
Confidence 3499999999999993 2445777764
No 16
>d1vg0a2 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.01 E-value=13 Score=26.55 Aligned_cols=9 Identities=33% Similarity=1.117 Sum_probs=7.6
Q ss_pred cceeeeeec
Q psy6131 109 GCSWSMYYN 117 (225)
Q Consensus 109 GcsWsmY~n 117 (225)
=.=||+|||
T Consensus 98 ~iLWslyf~ 106 (113)
T d1vg0a2 98 RLLWALYFN 106 (113)
T ss_dssp BEEEEEEEE
T ss_pred eEEEEEEEc
Confidence 367999998
No 17
>d3gtub1 a.45.1.1 (B:85-224) Class mu GST {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.87 E-value=24 Score=24.03 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=11.4
Q ss_pred ceeeccCch-hHHHHHHHHH
Q psy6131 128 RKFRLSVRS-EEQEIEEKMH 146 (225)
Q Consensus 128 rkfrl~~~~-eE~~le~~lq 146 (225)
|||.|.|.. +|+..-|.+.
T Consensus 1 Rk~~L~G~t~~E~a~vd~~~ 20 (140)
T d3gtub1 1 RKHNMCGETEEEKIRVDIIE 20 (140)
T ss_dssp HHTTCSCSSHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHH
Confidence 788899885 4443334333
No 18
>d1ripa_ b.40.4.5 (A:) Ribosomal protein S17 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=20.83 E-value=9.6 Score=26.29 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=22.4
Q ss_pred HHHHhhhCchhhhchhhhhccCCccccC----CcCCCCcce
Q psy6131 153 SPLYKALAPGAFTNQCQFEREASECRLG----FKPGRPFSG 189 (225)
Q Consensus 153 aPlYk~lAP~Ay~NQv~~E~~a~dCRLG----~k~gRPFSG 189 (225)
-|.|+++-.. ..+...+.. ..+|++| ..|.||.|=
T Consensus 28 ~~ky~K~~kr-~kk~~aHd~-~~~~~~GD~V~I~e~rPlSK 66 (81)
T d1ripa_ 28 HPLYGKRVKY-SKKYKAHDE-HNEAKVGDIVKIMETRPLSA 66 (81)
T ss_dssp CSCSSSCCCC-SBCCCCCCC-STTCSSCEECCBCCCCCSSS
T ss_pred cCccCEEEEe-eEEEEEECC-CCCCccCCEEEEEEccCCCC
Confidence 3666666554 334444433 3489999 789999883
Done!