RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy6131
         (225 letters)



>gnl|CDD|221808 pfam12851, Tet_JBP, Oxygenase domain of the 2OGFeDO superfamily.  A
           double-stranded beta helix (DSBH) fold domain of the
           2-oxoglutarate (2OG)-Fe(II)-dependent dioxygenase
           (2OGFeDO) superfamily found in various eukaryotes,
           bacteria and bacteriophages. Members of this family
           catalyze nucleic acid modifications, such as thymidine
           hydroxylation during base J synthesis in kinetoplastids,
           and the conversion of 5 methyl-cytosine (5-mC) to
           5-hydroxymethyl-cytosine (hmC), or further oxidation to
           5-formylcytosine (5fC) and 5-carboxylcytosine (5caC).
           Metazoan TET proteins contain a cysteine-rich region
           inserted into the core of the DSBH fold. Vertebrate TET
           proteins are oncogenes that are mutated in various
           myeloid cancers. Fungal and algal versions of this
           family are linked to a predicted transposase and show
           lineage-specific expansions.
          Length = 162

 Score = 82.8 bits (205), Expect = 5e-20
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 4/107 (3%)

Query: 111 SWSMYYNGCKYARSKTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQCQF 170
             + Y++G K    +  RK RL+  +E  ++EE +  LA T+S + K + P  +      
Sbjct: 1   GIAGYFDGRKRPGREKCRKTRLT--AESPKLEELLEELADTVSAILKVINPDLYNKLDSL 58

Query: 171 EREASECRLGFKPGRPFSGVTACFDFCAHSHRDLHNMNNGCTVSVVL 217
             +   C        PFS V+   +     HRD  +  NG  + V L
Sbjct: 59  LEDIGNC-KLLTEATPFSTVSVNKNRITALHRDKGDF-NGIGLLVTL 103


>gnl|CDD|218665 pfam05630, NPP1, Necrosis inducing protein (NPP1).  This family
           consists of several NPP1 like necrosis inducing proteins
           from oomycetes, fungi and bacteria. Infiltration of NPP1
           into leaves of Arabidopsis thaliana plants result in
           transcript accumulation of pathogenesis-related (PR)
           genes, production of ROS and ethylene, callose
           apposition, and HR-like cell death.
          Length = 195

 Score = 29.6 bits (67), Expect = 0.88
 Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 3/34 (8%)

Query: 94  CQGLDPDTCGASFSFGCSWSMYYNGCKYARSKTV 127
             GL P     S S GC  S   N   YARS   
Sbjct: 32  SGGLKP---TGSPSGGCRDSSDLNSQTYARSACY 62


>gnl|CDD|183858 PRK13059, PRK13059, putative lipid kinase; Reviewed.
          Length = 295

 Score = 29.2 bits (66), Expect = 1.5
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 7/38 (18%)

Query: 128 RKFRLSVRSEEQEIEEKMHLL-------ATTISPLYKA 158
           RK ++ V SEE   +  M+L+       A   +  YKA
Sbjct: 172 RKLKVKVTSEEVNFDGDMYLMLVFNGQTAGNFNLAYKA 209


>gnl|CDD|173158 PRK14695, PRK14695, serine/threonine transporter SstT; Provisional.
          Length = 319

 Score = 29.2 bits (65), Expect = 1.8
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 66  YAILTNKLNKYGLPT--TRRCATNEP---RTCACQGLDPDTCGASFSFGCSWSM 114
           Y ++ N L   G+    TR  ATN P   + C   GL+PDT   S   G + +M
Sbjct: 159 YPLVWNCLRVSGVTAFFTRSSATNIPVNMKLCHDLGLNPDTYSVSIPLGSTINM 212


>gnl|CDD|227830 COG5543, COG5543, Uncharacterized conserved protein [Function
           unknown].
          Length = 1400

 Score = 28.4 bits (63), Expect = 3.7
 Identities = 8/49 (16%), Positives = 18/49 (36%)

Query: 114 MYYNGCKYARSKTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPG 162
           +       + ++  RKF       ++++EE    L   +  +   L P 
Sbjct: 377 IRSRSMLKSLARYFRKFPDEQLWLKEKVEEAHKFLTMYLEVIKPMLRPT 425


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.134    0.432 

Gapped
Lambda     K      H
   0.267   0.0710    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,137,135
Number of extensions: 978588
Number of successful extensions: 648
Number of sequences better than 10.0: 1
Number of HSP's gapped: 646
Number of HSP's successfully gapped: 5
Length of query: 225
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 132
Effective length of database: 6,812,680
Effective search space: 899273760
Effective search space used: 899273760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)