RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6131
         (225 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 33.0 bits (74), Expect = 0.032
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 6/30 (20%)

Query: 137 EEQEI---EEKMHLLATTISPLYKALAPGA 163
           E+Q +   +  + L A   +P   ALA  A
Sbjct: 18  EKQALKKLQASLKLYADDSAP---ALAIKA 44


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.1 bits (75), Expect = 0.073
 Identities = 45/273 (16%), Positives = 72/273 (26%), Gaps = 134/273 (49%)

Query: 11  TQGCPLAKWVIRRASLEEKLLLIVKHRQGHTCSTAWIVVVIVAWEGVPLNQSDGVYAILT 70
           TQG  + +W      LE            +T    +++ + ++    PL    GV   L 
Sbjct: 210 TQGLNILEW------LENP---------SNTPDKDYLLSIPISC---PLI---GVIQ-LA 247

Query: 71  NKLNKYGLPTTRRCATNEPRTCACQGLDPD-----TCGASFSFGC--------------S 111
           +    Y +            T    G  P        GA+   G               S
Sbjct: 248 H----YVV------------TAKLLGFTPGELRSYLKGAT---GHSQGLVTAVAIAETDS 288

Query: 112 W-SMYYNGCKY--------ARS-----------KTVRKFR----------LSVRSEEQE- 140
           W S + +  K          R              +              LS+ +  QE 
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348

Query: 141 IEEKM-----HL-------LATTISP-----------LY-------KALAPGAFTNQCQ- 169
           +++ +     HL       ++                LY       KA AP    +Q + 
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG-LDQSRI 407

Query: 170 -FEREASECRLGFKPGRPFSGVTACFDFCAHSH 201
            F     +    F P      V + F    HSH
Sbjct: 408 PFSERKLKFSNRFLP------VASPF----HSH 430


>1xdy_A Bacterial sulfite oxidase; bioinformatics, sequence analysis,
           electron transfer, oxidoreductase, molybdoenzymes,
           molybdopterin; HET: MTE; 2.20A {Escherichia coli} SCOP:
           d.176.1.1 PDB: 1xdq_A*
          Length = 298

 Score = 28.8 bits (64), Expect = 1.2
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 4/37 (10%)

Query: 25  SLEE--KLLLIVKHRQGHTCSTAWIVVVIVAWEGVPL 59
             ++  +   + +      C  AW   ++V W G PL
Sbjct: 83  DHDDLTRRFPLEERIYRMRCVEAW--SMVVPWIGFPL 117


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 28.3 bits (62), Expect = 2.2
 Identities = 27/184 (14%), Positives = 50/184 (27%), Gaps = 70/184 (38%)

Query: 15  PLAKWVIRRASLEEKL---LLIVKHRQG---HT---CSTAWIVVVIVAWEGVPLNQSDGV 65
             AK+ + R     KL   LL ++  +             W+ + +     V       +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 66  YAILTNKLNKYGLPTTRRCATNEPRTCA------CQGLDPDTCGASFSFGCSWSMYYNGC 119
           + +             + C  N P T           +DP+                   
Sbjct: 185 FWL-----------NLKNC--NSPETVLEMLQKLLYQIDPNWT----------------- 214

Query: 120 KYARSKTVRKFRLSVRSEEQE----IEEKMH---LL-------ATTISPLYKALAPGAFT 165
             +RS      +L + S + E    ++ K +   LL       A   +         AF 
Sbjct: 215 --SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN---------AFN 263

Query: 166 NQCQ 169
             C+
Sbjct: 264 LSCK 267


>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal
          family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB:
          1utu_A
          Length = 102

 Score = 25.7 bits (56), Expect = 6.9
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 20 VIRRASLEEKLLLIVKHRQGHTCSTAWIV 48
           +RRA  +E+L  I  +  G   S+ W +
Sbjct: 68 EVRRAVNDERLTTIAHNMSGPNSSSEWSI 96


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.134    0.432 

Gapped
Lambda     K      H
   0.267   0.0490    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,491,822
Number of extensions: 193310
Number of successful extensions: 364
Number of sequences better than 10.0: 1
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 7
Length of query: 225
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 135
Effective length of database: 4,188,903
Effective search space: 565501905
Effective search space used: 565501905
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.5 bits)