RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6131
         (225 letters)



>d2q3za2 b.1.5.1 (A:472-585) Transglutaminase, two C-terminal
           domains {Human (Homo sapiens), tissue isozyme [TaxId:
           9606]}
          Length = 114

 Score = 27.0 bits (60), Expect = 0.83
 Identities = 6/34 (17%), Positives = 13/34 (38%)

Query: 110 CSWSMYYNGCKYARSKTVRKFRLSVRSEEQEIEE 143
           C+ ++ YNG       T     L++    ++   
Sbjct: 39  CARTVSYNGILGPECGTKYLLNLTLEPFSEKSVP 72


>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 90

 Score = 26.3 bits (58), Expect = 1.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 21 IRRASLEEKLLLIVKHRQGHTCSTAWIV 48
          +RRA  +E+L  I  +  G   S+ W +
Sbjct: 57 VRRAVNDERLTTIAHNMSGPNSSSEWSI 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.134    0.432 

Gapped
Lambda     K      H
   0.267   0.0669    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 875,460
Number of extensions: 39328
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 5
Length of query: 225
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,281,736
Effective search space: 183288248
Effective search space used: 183288248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)