BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6137
(93 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 44/57 (77%), Gaps = 2/57 (3%)
Query: 10 IGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM--ESRQPSI 64
GIVLVAINPY +LPIYG + I Y G+NMGD+DPHIFAVAEEAY +M + R SI
Sbjct: 103 CGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSI 159
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 44/57 (77%), Gaps = 2/57 (3%)
Query: 10 IGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM--ESRQPSI 64
GIVLVAINPY +LPIYG + I Y G+NMGD+DPHIFAVAEEAY +M + R SI
Sbjct: 103 CGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSI 159
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 44/57 (77%), Gaps = 2/57 (3%)
Query: 10 IGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM--ESRQPSI 64
GIVLVAINPY +LPIYG + I Y G+NMGD+DPHIFAVAEEAY +M + R SI
Sbjct: 103 CGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSI 159
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 56.6 bits (135), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Query: 13 VLVAINPYTELP-IYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKME 58
+L+A+NPY ++P IY S TI +Y+GK++G + PH+FA+A++A+ M+
Sbjct: 92 ILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMK 138
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
Length = 858
Score = 56.6 bits (135), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Query: 13 VLVAINPYTELP-IYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKME 58
+L+A+NPY ++P IY S TI +Y+GK++G + PH+FA+A++A+ M+
Sbjct: 93 ILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMK 139
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 56.6 bits (135), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Query: 13 VLVAINPYTELP-IYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKME 58
+L+A+NPY ++P IY S TI +Y+GK++G + PH+FA+A++A+ M+
Sbjct: 93 ILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMK 139
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 56.6 bits (135), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Query: 13 VLVAINPYTELP-IYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKME 58
+L+A+NPY ++P IY S TI +Y+GK++G + PH+FA+A++A+ M+
Sbjct: 92 ILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMK 138
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
pdb|4E7Z|B Chain B, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
Length = 798
Score = 56.6 bits (135), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Query: 13 VLVAINPYTELP-IYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKME 58
+L+A+NPY ++P IY S TI +Y+GK++G + PH+FA+A++A+ M+
Sbjct: 102 ILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMK 148
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4)
Length = 784
Score = 56.6 bits (135), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Query: 13 VLVAINPYTELP-IYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKME 58
+L+A+NPY ++P IY S TI +Y+GK++G + PH+FA+A++A+ M+
Sbjct: 89 ILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMK 135
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
Length = 814
Score = 56.6 bits (135), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Query: 13 VLVAINPYTELP-IYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKME 58
+L+A+NPY ++P IY S TI +Y+GK++G + PH+FA+A++A+ M+
Sbjct: 92 ILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMK 138
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
Length = 814
Score = 56.6 bits (135), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Query: 13 VLVAINPYTELP-IYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKME 58
+L+A+NPY ++P IY S TI +Y+GK++G + PH+FA+A++A+ M+
Sbjct: 92 ILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMK 138
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State
Length = 786
Score = 56.6 bits (135), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Query: 13 VLVAINPYTELP-IYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKME 58
+L+A+NPY ++P IY S TI +Y+GK++G + PH+FA+A++A+ M+
Sbjct: 90 ILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMK 136
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
Length = 814
Score = 56.6 bits (135), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Query: 13 VLVAINPYTELP-IYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKME 58
+L+A+NPY ++P IY S TI +Y+GK++G + PH+FA+A++A+ M+
Sbjct: 92 ILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMK 138
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
pdb|4E7S|B Chain B, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
Length = 798
Score = 56.6 bits (135), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Query: 13 VLVAINPYTELP-IYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKME 58
+L+A+NPY ++P IY S TI +Y+GK++G + PH+FA+A++A+ M+
Sbjct: 102 ILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMK 148
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 56.2 bits (134), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Query: 13 VLVAINPYTELP-IYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKME 58
+L+A+NPY ++P IY S TI +Y+GK++G + PH+FA+A++A+ M+
Sbjct: 93 ILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMK 139
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM 57
G+ +A+NPY LPIY + I YRGK ++ PH+F+VA+ AY M
Sbjct: 112 GLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNM 158
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM 57
G+ +A+NPY LPIY + I YRGK ++ PH+F+VA+ AY M
Sbjct: 117 GLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNM 163
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM 57
G+ +A+NPY LPIY + I YRGK ++ PH+F+VA+ AY M
Sbjct: 117 GLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNM 163
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM 57
G+ +A+NPY LPIY + I YRGK ++ PH+F+VA+ AY M
Sbjct: 117 GLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNM 163
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM 57
G+ +A+NPY LPIY + I YRGK ++ PH+F+VA+ AY M
Sbjct: 113 GLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNM 159
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM 57
G+ +A+NPY LPIY + I YRGK ++ PH+F+VA+ AY M
Sbjct: 117 GLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNM 163
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM 57
G+ +A+NPY LPIY + I YRGK ++ PH+F+VA+ AY M
Sbjct: 117 GLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNM 163
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM 57
G+ +AINPY LPIY + YRGK ++ PH+F++A+ AY M
Sbjct: 117 GLFCIAINPYRRLPIYTQGLVDKYRGKRRAEMPPHLFSIADNAYQYM 163
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 52.4 bits (124), Expect = 6e-08, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM 57
G+ V INPY +LPIY I Y+GK ++ PHI+A+A+ AY M
Sbjct: 117 GLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSM 163
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 52.4 bits (124), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM 57
G+ V INPY +LPIY I Y+GK ++ PHI+A+A+ AY M
Sbjct: 117 GLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSM 163
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 52.0 bits (123), Expect = 8e-08, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM 57
G+ V INPY +LPIY I Y+GK ++ PHI+A+A+ AY M
Sbjct: 117 GLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSM 163
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 52.0 bits (123), Expect = 9e-08, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM 57
G+ V INPY +LPIY I Y+GK ++ PHI+A+A+ AY M
Sbjct: 117 GLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSM 163
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 52.0 bits (123), Expect = 9e-08, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM 57
G+ V INPY +LPIY I Y+GK ++ PHI+A+A+ AY M
Sbjct: 117 GLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSM 163
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM 57
G+ V INPY +LPIY I Y+GK ++ PHI+A+A+ AY M
Sbjct: 117 GLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSM 163
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM 57
G+ V INPY +LPIY + YRGK ++ PH++AV E AY M
Sbjct: 94 GLFCVVINPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSM 140
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM 57
G+ V +NPY LP+Y + YRGK + PHIF++++ AY M
Sbjct: 117 GLFCVTVNPYKWLPVYNPKVVLAYRGKKRQEAPPHIFSISDNAYQFM 163
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM 57
G+ V +NPY LP+Y + YRGK + PHIF++++ AY M
Sbjct: 119 GLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYM 165
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM 57
G+ V +NPY LP+Y + YRGK + PHIF++++ AY M
Sbjct: 120 GLFCVTVNPYXWLPVYNPXVVLAYRGKKRQEAPPHIFSISDNAYQFM 166
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM 57
G+ V +NPY LP+Y + YRGK + PHIF++++ AY M
Sbjct: 117 GLFCVTVNPYXWLPVYNPXVVLAYRGKKRQEAPPHIFSISDNAYQFM 163
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM-ESRQ 61
G+ LVA+NP+ +PIY + ++G+ ++ PHIFA+++ AY M + RQ
Sbjct: 120 GLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 171
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM-ESRQ 61
G+ LVA+NP+ +PIY + ++G+ ++ PHIFA+++ AY M + RQ
Sbjct: 119 GLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 170
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM-ESRQ 61
G+ LVA+NP+ +PIY + ++G+ ++ PHIFA+++ AY M + RQ
Sbjct: 120 GLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 171
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM-ESRQ 61
G+ LVA+NP+ +PIY + ++G+ ++ PHIFA+++ AY M + RQ
Sbjct: 120 GLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 171
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM-ESRQ 61
G+ LVA+NP+ +PIY + ++G+ ++ PHIFA+++ AY M + RQ
Sbjct: 120 GLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 171
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM-ESRQ 61
G+ LVA+NP+ +PIY + ++G+ ++ PHIFA+++ AY M + RQ
Sbjct: 120 GLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 171
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM-ESRQ 61
G+ LVA+NP+ +PIY + ++G+ ++ PHIFA+++ AY M + RQ
Sbjct: 120 GLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 171
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM-ESRQ 61
G+ LVA+NP+ +PIY + ++G+ ++ PHIFA+++ AY M + RQ
Sbjct: 119 GLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 170
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM-ESRQ 61
G+ LVA+NP+ +PIY + ++G+ ++ PHIFA+++ AY M + RQ
Sbjct: 120 GLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 171
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM-ESRQ 61
G+ LVA+NP+ +PIY + ++G+ ++ PHIFA+++ AY M + RQ
Sbjct: 119 GLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 170
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM-ESRQ 61
G+ LVA+NP+ +PIY + ++G+ ++ PHIFA+++ AY M + RQ
Sbjct: 120 GLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 171
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM-ESRQ 61
G+ LVA+NP+ +PIY + ++G+ ++ PHIFA+++ AY M + RQ
Sbjct: 120 GLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 171
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM-ESRQ 61
G+ LVA+NP+ +PIY + ++G+ ++ PHIFA+++ AY M + RQ
Sbjct: 131 GLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 182
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM-ESRQ 61
G+ LVA+NP+ +PIY + ++G+ ++ PHIFA+++ AY M + RQ
Sbjct: 120 GLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 171
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM-ESRQ 61
G+ LVA+NP+ +PIY + ++G+ ++ PHIFA+++ AY M + RQ
Sbjct: 120 GLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 171
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM-ESRQ 61
G+ LVA+NP+ +PIY + ++G+ ++ PHIFA+++ AY M + RQ
Sbjct: 120 GLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 171
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM-ESRQ 61
G+ LVA+NP+ +PIY + ++G+ ++ PHIFA+++ AY M + RQ
Sbjct: 131 GLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 182
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM-ESRQ 61
G+ LVA+NP+ +PIY + ++G+ ++ PHIFA+++ AY M + RQ
Sbjct: 120 GLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 171
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM-ESRQ 61
G+ LVA+NP+ +PIY + ++G+ ++ PHIFA+++ AY M + RQ
Sbjct: 119 GLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 170
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM-ESRQ 61
G+ LVA+NP+ +PIY + ++G+ ++ PHIFA+++ AY M + RQ
Sbjct: 131 GLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 182
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM-ESRQ 61
G+ LVA+NP+ +PIY + ++G+ ++ PHIFA+++ AY M + RQ
Sbjct: 131 GLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 182
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM-ESRQ 61
G+ LVA+NP+ +PIY + ++G+ ++ PHIFA+++ AY M + RQ
Sbjct: 120 GLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 171
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentachlorocarbazole
Length = 695
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM-ESRQ 61
G+ LVA+NP+ +PIY + ++G+ ++ PHIFA+++ AY M + RQ
Sbjct: 119 GLFLVAVNPFKIIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 170
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 11 GIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM-ESRQ 61
G+ LVA+NP+ +PIY + ++G+ ++ PHIFA+++ AY M + RQ
Sbjct: 119 GLFLVAVNPFKIIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 170
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 10 IGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQ 61
IG V+++ NP+ L IY + I Y G+ ++ PH++A+A +AY M Q
Sbjct: 41 IGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQ 92
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 10 IGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQ 61
IG V+++ NP+ L IY + I Y G+ ++ PH++A+A +AY M Q
Sbjct: 41 IGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQ 92
>pdb|4F50|A Chain A, Y-family Dna Polymerase Chimera Dbh-dbh-dpo4
Length = 361
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 6 KEKEIGIVLVAINPYTELPI-------YGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKME 58
K K + ++ +A N Y+E P+ +G +N+ ++ P++F EE+Y K++
Sbjct: 220 KAKALYLLKLAQNKYSE-PVENKSKIPHGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLD 278
Query: 59 SRQP 62
R P
Sbjct: 279 KRIP 282
>pdb|2RDI|A Chain A, Snapshots Of A Y-family Dna Polymerase In Replication:
Dpo4 In Apo And Binary/ternary Complex Forms
Length = 342
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 36 GKNMGDLDPHIFAVAEEAYTKMESRQP 62
+N+ ++ P++F EE+Y K++ R P
Sbjct: 255 SRNLEEIKPYLFRAIEESYYKLDKRIP 281
>pdb|2AGO|A Chain A, Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide
Selection And Pyrophosphorolysis
pdb|2AGP|A Chain A, Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide
Selection And Pyrophosphorolysis
pdb|2AGP|B Chain B, Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide
Selection And Pyrophosphorolysis
pdb|2AGQ|A Chain A, Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide
Selection And Pyrophosphorolysis
pdb|3T5H|A Chain A, Ternary Complex Of Hne Adduct Modified Dna (5'-Cxg-3' Vs
13-Mer) With Dpo4 And Incoming Ddgt
pdb|3T5J|A Chain A, Ternary Complex Of Hne Adduct Modified Dna (5'-Txg-3' Vs
13-Mer) With Dpo4 And Incoming Ddtp
pdb|3T5K|A Chain A, Ternary Complex Of Hne Adduct Modified Dna (5'-Txg-3' Vs
14-Mer) With Dpo4 And Incoming Ddtp
pdb|3T5L|A Chain A, Ternary Complex Of Hne Adduct Modified Dna (5'-Cxg-3' Vs
14-Mer) With Dpo4 And Incoming Ddgt
Length = 341
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 36 GKNMGDLDPHIFAVAEEAYTKMESRQP 62
+N+ ++ P++F EE+Y K++ R P
Sbjct: 255 SRNLEEIKPYLFRAIEESYYKLDKRIP 281
>pdb|3PVX|A Chain A, Binary Complex Of Aflatoxin B1 Adduct Modified Dna
(Afb1-Fapy) With Dna Polymerase Iv
pdb|3PW0|A Chain A, Ternary Complex Of Aflatoxin B1 Adduct Modified Dna
(Afb1-Fapy) With Dna Polymerase Iv And Incoming Datp
pdb|3PW2|A Chain A, Ternary Complex Of Aflatoxin B1 Adduct Modified Dna
(Afb1-Fapy) With Dna Polymerase Iv And Incoming Dttp
pdb|3PW4|A Chain A, Ternary Complex Of Aflatoxin B1 Adduct Modified Dna
(Afb1-N7-Gua) With Dna Polymerase Iv And Incoming Datp
pdb|3PW5|A Chain A, Ternary Complex Of Aflatoxin B1 Adduct Modified Dna
(Afb1-N7-Gua) With Dna Polymerase Iv And Incoming Dttp
pdb|3PW7|A Chain A, Ternary Complex Of Aflatoxin B1 Adduct Modified Dna
(Afb1-N7-Gua) With Dna Polymerase Iv And Incoming Dctp
pdb|3PW7|E Chain E, Ternary Complex Of Aflatoxin B1 Adduct Modified Dna
(Afb1-N7-Gua) With Dna Polymerase Iv And Incoming Dctp
Length = 347
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 36 GKNMGDLDPHIFAVAEEAYTKMESRQP 62
+N+ ++ P++F EE+Y K++ R P
Sbjct: 261 SRNLEEIKPYLFRAIEESYYKLDKRIP 287
>pdb|3V6H|A Chain A, Replication Of N2,3-Ethenoguanine By Dna Polymerases
pdb|3V6H|B Chain B, Replication Of N2,3-Ethenoguanine By Dna Polymerases
pdb|3V6J|A Chain A, Replication Of N2,3-Ethenoguanine By Dna Polymerases
pdb|3V6J|J Chain J, Replication Of N2,3-Ethenoguanine By Dna Polymerases
Length = 348
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 36 GKNMGDLDPHIFAVAEEAYTKMESRQP 62
+N+ ++ P++F EE+Y K++ R P
Sbjct: 261 SRNLEEIKPYLFRAIEESYYKLDKRIP 287
>pdb|3PR4|A Chain A, Dpo4 Y12a Mutant Incorporating Dadp Opposite Template Dt
pdb|3PR5|B Chain B, Dpo4 Y12a Mutant Incorporating Adp Opposite Template Dt
Length = 341
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 36 GKNMGDLDPHIFAVAEEAYTKMESRQP 62
+N+ ++ P++F EE+Y K++ R P
Sbjct: 255 SRNLEEIKPYLFRAIEESYYKLDKRIP 281
>pdb|3GII|A Chain A, Dpo4 Extension Ternary Complex With Disordered A Opposite
An Oxog In Anti Conformation
pdb|3GIJ|A Chain A, Dpo4 Extension Ternary Complex With Oxog(Syn)-A(Anti) And
Oxog(Anti)- A(Syn) Pairs
pdb|3GIJ|B Chain B, Dpo4 Extension Ternary Complex With Oxog(Syn)-A(Anti) And
Oxog(Anti)- A(Syn) Pairs
pdb|3GIK|A Chain A, Dpo4 Extension Ternary Complex With The Oxog(Anti)-C(Anti)
Pair
pdb|3GIL|A Chain A, Dpo4 Extension Ternary Complex With Oxog(Anti)-T(Anti)
Pair
pdb|3GIL|B Chain B, Dpo4 Extension Ternary Complex With Oxog(Anti)-T(Anti)
Pair
pdb|3GIM|A Chain A, Dpo4 Extension Ternary Complex With Oxog(Anti)-G(Syn) Pair
pdb|3KHG|A Chain A, Dpo4 Extension Ternary Complex With Misinserted A Opposite
The 2- Aminofluorene-Guanine [af]g Lesion
pdb|3KHG|B Chain B, Dpo4 Extension Ternary Complex With Misinserted A Opposite
The 2- Aminofluorene-Guanine [af]g Lesion
pdb|3KHH|A Chain A, Dpo4 Extension Ternary Complex With A C Base Opposite The
2- Aminofluorene-Guanine [af]g Lesion
pdb|3KHH|B Chain B, Dpo4 Extension Ternary Complex With A C Base Opposite The
2- Aminofluorene-Guanine [af]g Lesion
pdb|3KHL|A Chain A, Dpo4 Post-Extension Ternary Complex With Misinserted A
Opposite The 2- Aminofluorene-Guanine [af]g Lesion
pdb|3KHL|B Chain B, Dpo4 Post-Extension Ternary Complex With Misinserted A
Opposite The 2- Aminofluorene-Guanine [af]g Lesion
pdb|3KHR|A Chain A, Dpo4 Post-Extension Ternary Complex With The Correct C
Opposite The 2- Aminofluorene-Guanine [af]g Lesion
pdb|3KHR|B Chain B, Dpo4 Post-Extension Ternary Complex With The Correct C
Opposite The 2- Aminofluorene-Guanine [af]g Lesion
pdb|3RAQ|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer C
Base Opposite The 1-Methylguanine (Mg1) Lesion
pdb|3RAQ|B Chain B, Dpo4 Extension Ternary Complex With 3'-Terminal Primer C
Base Opposite The 1-Methylguanine (Mg1) Lesion
pdb|3RAX|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer T
Base Opposite The 1-Methylguanine (M1g) Lesion
pdb|3RAX|B Chain B, Dpo4 Extension Ternary Complex With 3'-Terminal Primer T
Base Opposite The 1-Methylguanine (M1g) Lesion
pdb|3RB0|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer G
Base Opposite The 1-Methylguanine (M1g) Lesion
pdb|3RB0|B Chain B, Dpo4 Extension Ternary Complex With 3'-Terminal Primer G
Base Opposite The 1-Methylguanine (M1g) Lesion
pdb|3RB3|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer A
Base Opposite The 1-Methylguanine (M1g) Lesion
pdb|3RB4|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer G
Base Opposite The 3-Methylcytosine (M3c) Lesion
pdb|3RB4|B Chain B, Dpo4 Extension Ternary Complex With 3'-Terminal Primer G
Base Opposite The 3-Methylcytosine (M3c) Lesion
pdb|3RB6|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer A
Base Opposite The 3-Methylcytosine (M3c) Lesion
pdb|3RB6|B Chain B, Dpo4 Extension Ternary Complex With 3'-Terminal Primer A
Base Opposite The 3-Methylcytosine (M3c) Lesion
pdb|3RBD|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer C
Base Opposite The 3-Methylcytosine (M3c) Lesion
pdb|3RBD|B Chain B, Dpo4 Extension Ternary Complex With 3'-Terminal Primer C
Base Opposite The 3-Methylcytosine (M3c) Lesion
pdb|3RBE|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer T
Base Opposite The 3-Methylcytosine (M3c) Lesion
pdb|3RBE|B Chain B, Dpo4 Extension Ternary Complex With 3'-Terminal Primer T
Base Opposite The 3-Methylcytosine (M3c) Lesion
Length = 341
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 36 GKNMGDLDPHIFAVAEEAYTKMESRQP 62
+N+ ++ P++F EE+Y K++ R P
Sbjct: 255 SRNLEEIKPYLFRAIEESYYKLDKRIP 281
>pdb|1JX4|A Chain A, Crystal Structure Of A Y-Family Dna Polymerase In A
Ternary Complex With Dna Substrates And An Incoming
Nucleotide
Length = 352
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 36 GKNMGDLDPHIFAVAEEAYTKMESRQP 62
+N+ ++ P++F EE+Y K++ R P
Sbjct: 255 SRNLEEIKPYLFRAIEESYYKLDKRIP 281
>pdb|2W9B|A Chain A, Binary Complex Of Dpo4 Bound To N2,N2-Dimethyl-
Deoxyguanosine Modified Dna
pdb|2W9C|A Chain A, Ternary Complex Of Dpo4 Bound To N2,N2-Dimethyl-
Deoxyguanosine Modified Dna With Incoming Dttp
Length = 358
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 36 GKNMGDLDPHIFAVAEEAYTKMESRQP 62
+N+ ++ P++F EE+Y K++ R P
Sbjct: 261 SRNLEEIKPYLFRAIEESYYKLDKRIP 287
>pdb|2IMW|P Chain P, Mechanism Of Template-Independent Nucleotide Incorporation
Catalyzed By A Template-Dependent Dna Polymerase
Length = 348
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 36 GKNMGDLDPHIFAVAEEAYTKMESRQP 62
+N+ ++ P++F EE+Y K++ R P
Sbjct: 255 SRNLEEIKPYLFRAIEESYYKLDKRIP 281
>pdb|2BQ3|A Chain A, Dna Adduct Bypass Polymerization By Sulfolobus
Solfataricus Dpo4. Analysis And Crystal Structures Of
Multiple Base- Pair Substitution And Frameshift Products
With The Adduct 1,N2-Ethenoguanine
pdb|2BQR|A Chain A, Dna Adduct Bypass Polymerization By Sulfolobus
Solfataricus Dpo4. Analysis And Crystal Structures Of
Multiple Base- Pair Substitution And Frameshift Products
With The Adduct 1,N2-Ethenoguanine
pdb|2BQU|A Chain A, Dna Adduct Bypass Polymerization By Sulfolobus
Solfataricus Dpo4. Analysis And Crystal Structures Of
Multiple Base- Pair Substitution And Frameshift Products
With The Adduct 1,N2-Ethenoguanine
pdb|2BR0|A Chain A, Dna Adduct Bypass Polymerization By Sulfolobus
Solfataricus Dpo4. Analysis And Crystal Structures Of
Multiple Base- Pair Substitution And Frameshift Products
With The Adduct 1,N2-Ethenoguanine
pdb|2C22|A Chain A, Efficient And High Fidelity Incorporation Of Dctp Opposite
7,8-Dihydro-8-Oxodeoxyguanosine By Sulfolobus
Solfataricus Dna Polymerase Dpo4
pdb|2C28|A Chain A, Efficient And High Fidelity Incorporation Of Dctp Opposite
7,8-Dihydro-8-Oxodeoxyguanosine By Sulfolobus
Solfataricus Dna Polymerase Dpo4
pdb|2C2D|A Chain A, Efficient And High Fidelity Incorporation Of Dctp Opposite
7,8-Dihydro-8-Oxodeoxyguanosine By Sulfolobus
Solfataricus Dna Polymerase Dpo4
pdb|2C2E|A Chain A, Efficient And High Fidelity Incorporation Of Dctp Opposite
7,8-Dihydro-8-Oxodeoxyguanosine By Sulfolobus
Solfataricus Dna Polymerase Dpo4
pdb|2C2R|A Chain A, Efficient And High Fidelity Incorporation Of Dctp Opposite
7,8-Dihydro-8-Oxodeoxyguanosine By Sulfolobus
Solfataricus Dna Polymerase Dpo4
pdb|2J6S|A Chain A, Ternary Complex Of Sulfolobus Solfataricus Dpo4 Dna
Polymerase, O6-Methylguanine Modified Dna, And Datp.
pdb|2J6T|A Chain A, Ternary Complex Of Sulfolobus Solfataricus Dpo4 Dna
Polymerase, O6-Methylguanine Modified Dna, And Datp.
pdb|2J6U|A Chain A, Ternary Complex Of Sulfolobus Solfataricus Dpo4 Dna
Polymerase, O6-methylguanine Modified Dna, And Dgtp.
pdb|2JEF|A Chain A, The Molecular Basis Of Selectivity Of Nucleotide
Triphosphate Incorporation Opposite O6-benzylguanine By
Sulfolobus Solfataricus Dna Polymerase Iv: Steady-state
And Pre-steady-state And X-ray Crystallography Of
Correct And Incorrect Pairing
pdb|2JEG|A Chain A, The Molecular Basis Of Selectivity Of Nucleoside
Triphosphate Incorporation Opposite O6-Benzylguanine By
Sulfolobus Solfataricus Dna Polymerase Iv: Steady-State
And Pre-Steady-State Kinetics And X-Ray Crystallography
Of Correct And Incorrect Pairing
pdb|2JEI|A Chain A, The Molecular Basis Of Selectivity Of Nucleoside
Triphosphate Incorporation Opposite O6-benzylguanine By
Sulfolobus Solfataricus Dna Polymerase Iv: Steady-state
And Pre-steady-state Kinetics And X-ray Crystallography
Of Correct And Incorrect Pairing
pdb|2JEJ|A Chain A, The Molecular Basis Of Selectivity Of Nucleoside
Triphosphate Incorporation Opposite O6-Benzylguanine By
Sulfolobus Solfataricus Dna Polymerase Iv: Steady-State
And Pre-Steady-State Kinetics And X-Ray Crystallography
Of Correct And Incorrect Pairing
pdb|2V9W|A Chain A, Complex Structure Of Sulfolobus Solfataricus Dpo4 And Dna
Duplex Containing A Hydrophobic Thymine Isostere 2,4-
Difluorotoluene Nucleotide In The Template Strand
pdb|2V9W|B Chain B, Complex Structure Of Sulfolobus Solfataricus Dpo4 And Dna
Duplex Containing A Hydrophobic Thymine Isostere 2,4-
Difluorotoluene Nucleotide In The Template Strand
pdb|2VA2|A Chain A, Complex Structure Of Sulfolobus Solfataricus Dpo4 And Dna
Duplex Containing A Hydrophobic Thymine Isostere 2,4-
Difluorotoluene Nucleotide In The Template Strand
pdb|2VA2|B Chain B, Complex Structure Of Sulfolobus Solfataricus Dpo4 And Dna
Duplex Containing A Hydrophobic Thymine Isostere 2,4-
Difluorotoluene Nucleotide In The Template Strand
pdb|2VA3|A Chain A, Complex Structure Of Sulfolobus Solfataricus Dpo4 And Dna
Duplex Containing A Hydrophobic Thymine Isostere 2,4-
Difluorotoluene Nucleotide In The Template Strand
pdb|2W8K|A Chain A, Y-Family Dna Polymerase Dpo4 Bypassing N2-Naphthyl-Guanine
Adduct In Syn Orientation
pdb|2W8L|A Chain A, Y-Family Dna Polymerase Dpo4 Bypassing N2-Naphthyl-Guanine
Adduct In Anti Orientation
pdb|2W9A|A Chain A, Ternary Complex Of Dpo4 Bound To N2,N2-Dimethyl-
Deoxyguanosine Modified Dna With Incoming Dgtp
pdb|2W9B|B Chain B, Binary Complex Of Dpo4 Bound To N2,N2-Dimethyl-
Deoxyguanosine Modified Dna
pdb|2W9C|B Chain B, Ternary Complex Of Dpo4 Bound To N2,N2-Dimethyl-
Deoxyguanosine Modified Dna With Incoming Dttp
pdb|2V4Q|A Chain A, Post-Insertion Complex Of The Y-Family Dna Polymerase Dpo4
With M1dg Containing Template Dna
pdb|2V4R|A Chain A, Non-Productive Complex Of The Y-Family Dna Polymerase Dpo4
With Dgtp Skipping The M1dg Adduct To Pair With The Next
Template Cytosine
pdb|2XC9|A Chain A, Binary Complex Of Sulfolobus Solfataricus Dpo4 Dna
Polymerase And 1,N2-Ethenoguanine Modified Dna,
Magnesium Form
pdb|2XCA|A Chain A, Ternary Complex Of Sulfolobus Solfataricus Dpo4 Dna
Polymerase, 7,8-Dihydro-8-Oxodeoxyguanine Modified Dna
And Dgtp - Magnesium Form
pdb|2XCP|A Chain A, Ternary Complex Of Sulfolobus Solfataricus Dpo4 Dna
Polymerase, 7,8-Dihydro-8-Oxodeoxyguanine Modified Dna
And Dctp - Magnesium Form
pdb|2XCP|B Chain B, Ternary Complex Of Sulfolobus Solfataricus Dpo4 Dna
Polymerase, 7,8-Dihydro-8-Oxodeoxyguanine Modified Dna
And Dctp - Magnesium Form
pdb|4GC6|A Chain A, Crystal Structure Of Dpo4 In Complex With N-mc-damp
Opposite Dt
Length = 358
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 36 GKNMGDLDPHIFAVAEEAYTKMESRQP 62
+N+ ++ P++F EE+Y K++ R P
Sbjct: 261 SRNLEEIKPYLFRAIEESYYKLDKRIP 287
>pdb|1JXL|A Chain A, Crystal Structure Of A Y-Family Dna Polymerase In A
Ternary Complex With Dna Substrates And An Incoming
Nucleotide
pdb|1N48|A Chain A, Y-Family Dna Polymerase Dpo4 In Complex With Dna
Containing Abasic Lesion
pdb|1N56|A Chain A, Y-Family Dna Polymerase Dpo4 In Complex With Dna
Containing Abasic Lesion
pdb|1N56|B Chain B, Y-Family Dna Polymerase Dpo4 In Complex With Dna
Containing Abasic Lesion
pdb|1RYR|A Chain A, Replication Of A Cis-Syn Thymine Dimer At Atomic
Resolution
pdb|1RYS|A Chain A, Replication Of A Cis-Syn Thymine Dimer At Atomic
Resolution
pdb|1RYS|B Chain B, Replication Of A Cis-Syn Thymine Dimer At Atomic
Resolution
pdb|1S0M|A Chain A, Crystal Structure Of A Benzo[a]pyrene Diol Epoxide Adduct
In A Ternary Complex With A Dna Polymerase
pdb|1S0M|B Chain B, Crystal Structure Of A Benzo[a]pyrene Diol Epoxide Adduct
In A Ternary Complex With A Dna Polymerase
pdb|1S0N|A Chain A, Snapshots Of Replication Through An Abasic Lesion:
Structural Basis For Base Substitution And Frameshift
pdb|1S0O|A Chain A, Snapshots Of Replication Through An Abasic Lesion:
Structural Basis For Base Substitution And Frameshift
pdb|1S0O|B Chain B, Snapshots Of Replication Through An Abasic Lesion:
Structural Basis For Base Substitution And Frameshift
pdb|1S10|A Chain A, Snapshots Of Replication Through An Abasic Lesion:
Structural Basis For Base Substitution And Frameshift
pdb|1S97|A Chain A, Dpo4 With Gt Mismatch
pdb|1S97|B Chain B, Dpo4 With Gt Mismatch
pdb|1S97|C Chain C, Dpo4 With Gt Mismatch
pdb|1S97|D Chain D, Dpo4 With Gt Mismatch
pdb|1S9F|A Chain A, Dpo With At Matched
pdb|1S9F|B Chain B, Dpo With At Matched
pdb|1S9F|C Chain C, Dpo With At Matched
pdb|1S9F|D Chain D, Dpo With At Matched
pdb|2IA6|A Chain A, Bypass Of Major Benzopyrene-Dg Adduct By Y-Family Dna
Polymerase With Unique Structural Gap
pdb|2IA6|B Chain B, Bypass Of Major Benzopyrene-Dg Adduct By Y-Family Dna
Polymerase With Unique Structural Gap
pdb|2IBK|A Chain A, Bypass Of Major Benzopyrene-Dg Adduct By Y-Family Dna
Polymerase With Unique Structural Gap
pdb|2RDJ|A Chain A, Snapshots Of A Y-family Dna Polymerase In Replication:
Dpo4 In Apo And Binary/ternary Complex Forms
pdb|2RDJ|B Chain B, Snapshots Of A Y-family Dna Polymerase In Replication:
Dpo4 In Apo And Binary/ternary Complex Forms
pdb|2R8G|A Chain A, Selectivity Of Nucleoside Triphosphate Incorporation
Opposite 1,N2-Propanodeoxyguanosine (Pdg) By The
Sulfolobus Solfataricus Dna Polymerase Dpo4 Polymerase
pdb|2R8H|A Chain A, Selectivity Of Nucleoside Triphosphate Incorporation
Opposite 1,N2- Propanodeoxyguanosine (Pdg) By The
Sulfolobus Solfataricus Dna Polymerase Dpo4 Polymerase
pdb|2R8I|A Chain A, Selectivity Of Nucleoside Triphosphate Incorporation
Opposite 1,N2-Propanodeoxyguanosine (Pdg) By The
Sulfolobus Solfataricus Dna Polymerase Dpo4 Polymerase
pdb|3FDS|A Chain A, Structural Insight Into Recruitment Of Translesion Dna
Polymerase Dpo4 To Sliding Clamp Pcna
pdb|3M9M|B Chain B, Crystal Structure Of Dpo4 In Complex With Dna Containing
The Major Cisplatin Lesion
pdb|3M9N|B Chain B, Crystal Structure Of Dpo4 In Complex With Dna Containing
The Major Cisplatin Lesion
pdb|3M9O|B Chain B, Crystal Structure Of Dpo4 In Complex With Dna Containing
The Major Cisplatin Lesion
Length = 352
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 36 GKNMGDLDPHIFAVAEEAYTKMESRQP 62
+N+ ++ P++F EE+Y K++ R P
Sbjct: 255 SRNLEEIKPYLFRAIEESYYKLDKRIP 281
>pdb|4GC7|A Chain A, Crystal Structure Of Dpo4 In Complex With S-mc-dadp
Opposite Dt
pdb|4GC7|B Chain B, Crystal Structure Of Dpo4 In Complex With S-mc-dadp
Opposite Dt
Length = 359
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 36 GKNMGDLDPHIFAVAEEAYTKMESRQP 62
+N+ ++ P++F EE+Y K++ R P
Sbjct: 262 SRNLEEIKPYLFRAIEESYYKLDKRIP 288
>pdb|2UVV|A Chain A, Crystal Structures Of Mutant Dpo4 Dna Polymerases With 8-
Oxog Containing Dna Template-Primer Constructs
pdb|2UVW|A Chain A, Crystal Structures Of Mutant Dpo4 Dna Polymerases With 8-
Oxog Containing Dna Template-Primer Constructs
Length = 358
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 36 GKNMGDLDPHIFAVAEEAYTKMESRQP 62
+N+ ++ P++F EE+Y K++ R P
Sbjct: 261 SRNLEEIKPYLFRAIEESYYKLDKRIP 287
>pdb|2UVR|A Chain A, Crystal Structures Of Mutant Dpo4 Dna Polymerases With 8-
Oxog Containing Dna Template-Primer Constructs
pdb|2UVU|A Chain A, Crystal Structures Of Mutant Dpo4 Dna Polymerases With 8-
Oxog Containing Dna Template-Primer Constructs
Length = 358
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 36 GKNMGDLDPHIFAVAEEAYTKMESRQP 62
+N+ ++ P++F EE+Y K++ R P
Sbjct: 261 SRNLEEIKPYLFRAIEESYYKLDKRIP 287
>pdb|3V6K|A Chain A, Replication Of N2,3-Ethenoguanine By Dna Polymerases
pdb|3V6K|J Chain J, Replication Of N2,3-Ethenoguanine By Dna Polymerases
Length = 347
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 36 GKNMGDLDPHIFAVAEEAYTKMESRQP 62
+N+ ++ P++F EE+Y K++ R P
Sbjct: 260 SRNLEEIKPYLFRAIEESYYKLDKRIP 286
>pdb|3QZ7|A Chain A, T-3 Ternary Complex Of Dpo4
pdb|3QZ8|A Chain A, Tt-4 Ternary Complex Of Dpo4
Length = 360
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 36 GKNMGDLDPHIFAVAEEAYTKMESRQP 62
+N+ ++ P++F EE+Y K++ R P
Sbjct: 255 SRNLEEIKPYLFRAIEESYYKLDKRIP 281
>pdb|2ASD|A Chain A, Oxog-Modified Insertion Ternary Complex
pdb|2ASD|B Chain B, Oxog-Modified Insertion Ternary Complex
pdb|2ASJ|A Chain A, Oxog-Modified Preinsertion Binary Complex
pdb|2ASJ|B Chain B, Oxog-Modified Preinsertion Binary Complex
pdb|2ASL|A Chain A, Oxog-Modified Postinsertion Binary Complex
pdb|2ASL|B Chain B, Oxog-Modified Postinsertion Binary Complex
pdb|2ATL|A Chain A, Unmodified Insertion Ternary Complex
pdb|2ATL|B Chain B, Unmodified Insertion Ternary Complex
pdb|2AU0|A Chain A, Unmodified Preinsertion Binary Complex
pdb|2AU0|B Chain B, Unmodified Preinsertion Binary Complex
Length = 360
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 36 GKNMGDLDPHIFAVAEEAYTKMESRQP 62
+N+ ++ P++F EE+Y K++ R P
Sbjct: 263 SRNLEEIKPYLFRAIEESYYKLDKRIP 289
>pdb|4F4W|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #1
pdb|4F4W|B Chain B, Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #1
pdb|4F4X|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #2
Length = 361
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 37 KNMGDLDPHIFAVAEEAYTKMESRQP 62
+N+ ++ P++F EE+Y K++ R P
Sbjct: 257 RNLEEIKPYLFRAIEESYYKLDKRIP 282
>pdb|3BNW|A Chain A, Crystal Structure Of Riboflavin Kinase From Trypanosoma
Brucei
pdb|3BNW|B Chain B, Crystal Structure Of Riboflavin Kinase From Trypanosoma
Brucei
Length = 181
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 13 VLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVA 50
V+ + PY L +YG T+ GK P+ FA +
Sbjct: 48 VMECLQPYKNLVVYGWGTVSQVPGKERESFGPYPFAAS 85
>pdb|2VTF|A Chain A, X-Ray Crystal Structure Of The Endo-Beta-N-
Acetylglucosaminidase From Arthrobacter Protophormiae
E173q Mutant Reveals A Tim Barrel Catalytic Domain And
Two Ancillary Domains
pdb|2VTF|B Chain B, X-Ray Crystal Structure Of The Endo-Beta-N-
Acetylglucosaminidase From Arthrobacter Protophormiae
E173q Mutant Reveals A Tim Barrel Catalytic Domain And
Two Ancillary Domains
Length = 626
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 21 TELPIY-GSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQ 61
TELPI G++ WT++ ++ DL+ EE + +E Q
Sbjct: 441 TELPISEGTSLTWTFKSEHGNDLNVGFRLDGEEDFRYVEGEQ 482
>pdb|3FHA|A Chain A, Structure Of Endo-Beta-N-Acetylglucosaminidase A
pdb|3FHA|B Chain B, Structure Of Endo-Beta-N-Acetylglucosaminidase A
pdb|3FHA|C Chain C, Structure Of Endo-Beta-N-Acetylglucosaminidase A
pdb|3FHA|D Chain D, Structure Of Endo-Beta-N-Acetylglucosaminidase A
Length = 621
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 21 TELPIY-GSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQ 61
TELPI G++ WT++ ++ DL+ EE + +E Q
Sbjct: 436 TELPISEGTSLTWTFKSEHDNDLNVGFRLDGEEDFRYVEGEQ 477
>pdb|3FHQ|A Chain A, Structure Of Endo-Beta-N-Acetylglucosaminidase A
pdb|3FHQ|B Chain B, Structure Of Endo-Beta-N-Acetylglucosaminidase A
pdb|3FHQ|D Chain D, Structure Of Endo-Beta-N-Acetylglucosaminidase A
pdb|3FHQ|F Chain F, Structure Of Endo-Beta-N-Acetylglucosaminidase A
Length = 621
Score = 25.4 bits (54), Expect = 8.4, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 21 TELPIY-GSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQ 61
TELPI G++ WT++ ++ DL+ EE + +E Q
Sbjct: 436 TELPISEGTSLTWTFKSEHDNDLNVGFRLDGEEDFRYVEGEQ 477
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,243,445
Number of Sequences: 62578
Number of extensions: 78419
Number of successful extensions: 208
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 116
Number of HSP's gapped (non-prelim): 83
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)