Query psy6137
Match_columns 93
No_of_seqs 126 out of 1029
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 18:33:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6137.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6137hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161|consensus 99.9 9.8E-27 2.1E-31 200.5 6.6 77 3-82 108-184 (1930)
2 cd01380 MYSc_type_V Myosin mot 99.9 5.2E-26 1.1E-30 183.6 8.8 80 2-84 25-104 (691)
3 cd01377 MYSc_type_II Myosin mo 99.9 6.7E-26 1.4E-30 183.1 8.6 80 2-84 30-109 (693)
4 COG5022 Myosin heavy chain [Cy 99.9 7.2E-26 1.6E-30 190.3 8.4 80 2-84 91-170 (1463)
5 PTZ00014 myosin-A; Provisional 99.9 1.6E-25 3.4E-30 183.4 9.0 80 2-84 121-201 (821)
6 cd01386 MYSc_type_XVIII Myosin 99.9 1.7E-25 3.6E-30 182.3 8.8 80 2-84 25-104 (767)
7 cd01378 MYSc_type_I Myosin mot 99.9 1.3E-25 2.9E-30 180.9 8.2 79 2-83 25-103 (674)
8 cd01381 MYSc_type_VII Myosin m 99.9 1.7E-25 3.7E-30 180.2 8.2 80 2-84 25-104 (671)
9 cd01387 MYSc_type_XV Myosin mo 99.9 1.7E-25 3.8E-30 180.3 8.2 79 2-83 26-104 (677)
10 cd01385 MYSc_type_IX Myosin mo 99.9 3E-25 6.6E-30 179.3 8.1 80 2-84 32-112 (692)
11 cd01384 MYSc_type_XI Myosin mo 99.9 3.5E-25 7.6E-30 178.5 8.1 79 2-83 26-105 (674)
12 PF00063 Myosin_head: Myosin h 99.9 4.3E-25 9.3E-30 177.4 6.3 77 2-81 24-100 (689)
13 cd00124 MYSc Myosin motor doma 99.9 9.9E-25 2.2E-29 175.8 8.3 79 2-83 25-103 (679)
14 cd01382 MYSc_type_VI Myosin mo 99.9 1.9E-24 4.1E-29 175.2 8.2 79 2-83 29-108 (717)
15 KOG0164|consensus 99.9 2.1E-24 4.6E-29 173.3 7.1 80 2-84 33-112 (1001)
16 smart00242 MYSc Myosin. Large 99.9 2.3E-24 5.1E-29 173.7 7.4 79 2-83 31-109 (677)
17 cd01383 MYSc_type_VIII Myosin 99.9 6.3E-24 1.4E-28 171.3 8.2 78 2-84 33-110 (677)
18 cd01379 MYSc_type_III Myosin m 99.9 1.3E-23 2.8E-28 169.0 8.1 80 2-84 25-104 (653)
19 KOG0162|consensus 99.9 3.6E-23 7.8E-28 166.7 6.5 79 2-83 43-121 (1106)
20 KOG0163|consensus 99.9 2.5E-22 5.4E-27 162.4 3.2 80 2-84 82-162 (1259)
21 KOG0160|consensus 99.8 8.8E-19 1.9E-23 143.7 5.5 73 3-78 34-107 (862)
22 KOG4229|consensus 99.6 1.3E-16 2.9E-21 133.3 4.6 74 2-77 86-160 (1062)
23 cd01363 Motor_domain Myosin an 93.7 0.13 2.9E-06 35.4 4.3 28 46-76 8-35 (186)
24 KOG0925|consensus 91.3 0.3 6.6E-06 39.8 3.9 54 13-76 20-73 (699)
25 PF02495 7kD_coat: 7kD viral c 81.7 2.5 5.4E-05 24.2 3.2 16 59-75 21-36 (59)
26 smart00275 G_alpha G protein a 61.0 8.6 0.00019 29.2 2.7 16 61-76 19-34 (342)
27 PF00503 G-alpha: G-protein al 59.4 5.4 0.00012 30.4 1.4 17 60-76 55-71 (389)
28 KOG0082|consensus 53.5 13 0.00028 28.8 2.6 26 52-77 22-47 (354)
29 KOG0920|consensus 34.0 17 0.00036 31.7 0.6 15 62-76 185-199 (924)
30 TIGR00008 infA translation ini 32.6 38 0.00081 20.2 1.8 21 1-21 38-59 (68)
31 cd01080 NAD_bind_m-THF_DH_Cycl 32.3 96 0.0021 21.2 4.0 33 44-76 25-58 (168)
32 KOG2862|consensus 32.2 1.5E+02 0.0032 23.3 5.3 51 26-76 28-81 (385)
33 KOG4848|consensus 30.1 30 0.00066 25.0 1.2 17 40-56 58-74 (225)
34 PF13434 K_oxygenase: L-lysine 28.1 19 0.00042 27.2 -0.0 32 44-76 172-203 (341)
35 KOG0099|consensus 27.7 24 0.00052 27.1 0.4 15 63-77 40-54 (379)
36 KOG0085|consensus 27.0 61 0.0013 24.5 2.4 17 61-77 37-53 (359)
37 PF14736 N_Asn_amidohyd: Prote 26.1 2.7E+02 0.0059 20.9 5.7 48 13-60 193-248 (274)
38 PF06936 Selenoprotein_S: Sele 25.3 51 0.0011 23.3 1.7 15 77-91 104-118 (190)
39 PF10669 Phage_Gp23: Protein g 24.6 45 0.00098 21.6 1.2 12 76-87 51-62 (121)
40 PF02514 CobN-Mg_chel: CobN/Ma 23.5 1.7E+02 0.0038 26.1 4.9 53 8-68 379-431 (1098)
41 COG1504 Uncharacterized conser 23.3 66 0.0014 21.2 1.8 26 66-91 64-89 (121)
42 PHA00198 nonstructural protein 22.7 55 0.0012 20.3 1.3 27 41-67 19-45 (86)
43 PF11044 TMEMspv1-c74-12: Plec 22.4 66 0.0014 17.8 1.4 12 78-89 34-45 (49)
44 COG2018 Uncharacterized distan 21.4 98 0.0021 20.4 2.3 30 44-76 50-79 (119)
45 KOG2884|consensus 21.1 2.3E+02 0.005 21.0 4.4 47 45-92 86-135 (259)
46 KOG1680|consensus 20.5 2.3E+02 0.005 21.5 4.4 21 52-72 71-91 (290)
47 COG0027 PurT Formate-dependent 20.1 71 0.0015 25.0 1.7 16 61-76 10-25 (394)
No 1
>KOG0161|consensus
Probab=99.93 E-value=9.8e-27 Score=200.50 Aligned_cols=77 Identities=35% Similarity=0.566 Sum_probs=72.6
Q ss_pred CCCceeeecccEEEeCCCCCCCCCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhhhH
Q psy6137 3 KEEKEKEIGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKKEE 82 (93)
Q Consensus 3 ~~~iYT~~G~iLIaVNP~k~l~iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~~~ 82 (93)
.+.||||+|++||+||||+++|||++.++..|.|+++.++|||||+||+.||++|+.++.||||+| +||||. ||-+-
T Consensus 108 ~~lIyTYSGLFcVviNPyk~lpiYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL~~renQSiLi--TGESGA-GKTeN 184 (1930)
T KOG0161|consen 108 SDLIYTYSGLFCVVINPYKRLPIYTESVVRMYKGKKREEMPPHIFAVADEAYRNMLQDRENQSILI--TGESGA-GKTEN 184 (1930)
T ss_pred hChHHHcccceeEEecCCcCCCCCCHHHHHHhcccccccCCchHHHHHHHHHHHHHhcCCCceEee--ecCCCC-Ccchh
Confidence 589999999999999999999999999999999999999999999999999999999999999987 999997 55443
No 2
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=99.93 E-value=5.2e-26 Score=183.63 Aligned_cols=80 Identities=44% Similarity=0.691 Sum_probs=74.2
Q ss_pred CCCCceeeecccEEEeCCCCCCCCCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKKE 81 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~~ 81 (93)
.+++||||+|++|||||||+.+|+|++.++..|++....++|||||++|++||+.|+.+++|||||| |||||. ||-|
T Consensus 25 ~~~~iYT~~G~iLiavNPyk~l~~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIii--SGESGa-GKTe 101 (691)
T cd01380 25 IQKQIYTYSGIVLVAINPYARLPIYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQMTRDEKNQSIIV--SGESGA-GKTV 101 (691)
T ss_pred cCCCCEEeECCEEEEeCCCCCCCcCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEE--EcCCCC-CchH
Confidence 5799999999999999999999999999999999999999999999999999999999999999987 999997 5655
Q ss_pred HHH
Q psy6137 82 EEK 84 (93)
Q Consensus 82 ~~~ 84 (93)
--|
T Consensus 102 s~K 104 (691)
T cd01380 102 SAK 104 (691)
T ss_pred HHH
Confidence 443
No 3
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=99.93 E-value=6.7e-26 Score=183.07 Aligned_cols=80 Identities=34% Similarity=0.538 Sum_probs=74.0
Q ss_pred CCCCceeeecccEEEeCCCCCCCCCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKKE 81 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~~ 81 (93)
.+|+||||+|++|||||||+++++|++.++..|+++...++|||||++|++||+.|+.+++|||||| |||||. ||-|
T Consensus 30 ~~~~iYT~~G~iLIavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHiyaiA~~Ay~~m~~~~~~QsIii--SGESGA-GKTe 106 (693)
T cd01377 30 YSDLIYTYSGLFCVAVNPYKRLPIYTEEVVEMYRGKKREEMPPHIFAIADNAYRSMLQDRENQSILI--TGESGA-GKTE 106 (693)
T ss_pred hcCCcEEeecceeEeecCCccCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEE--EcCCCC-CchH
Confidence 4789999999999999999999999999999999998889999999999999999999999999987 999997 5655
Q ss_pred HHH
Q psy6137 82 EEK 84 (93)
Q Consensus 82 ~~~ 84 (93)
--|
T Consensus 107 s~K 109 (693)
T cd01377 107 NTK 109 (693)
T ss_pred HHH
Confidence 443
No 4
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=99.93 E-value=7.2e-26 Score=190.25 Aligned_cols=80 Identities=38% Similarity=0.603 Sum_probs=75.0
Q ss_pred CCCCceeeecccEEEeCCCCCCCCCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKKE 81 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~~ 81 (93)
.+|+||||+|.+|||||||..+++|+.++++.|.++.+.+++|||||||+.||+.|+..++|||||| |||||. ||-|
T Consensus 91 ~n~~IYTYSGlvLIAvNPy~~L~iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiI--SGESGA-GKTe 167 (1463)
T COG5022 91 NNGQIYTYSGLVLIAVNPYRDLGIYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIII--SGESGA-GKTE 167 (1463)
T ss_pred hcCceeEEeeeEEEEecCcccCCCccHHHHHHhccCccccCCchHHHHHHHHHHHHHhcCCCceEEE--ecCCCC-CchH
Confidence 5799999999999999999999999999999999999999999999999999999999999999988 999997 6665
Q ss_pred HHH
Q psy6137 82 EEK 84 (93)
Q Consensus 82 ~~~ 84 (93)
..|
T Consensus 168 ~aK 170 (1463)
T COG5022 168 NAK 170 (1463)
T ss_pred HHH
Confidence 544
No 5
>PTZ00014 myosin-A; Provisional
Probab=99.92 E-value=1.6e-25 Score=183.39 Aligned_cols=80 Identities=28% Similarity=0.371 Sum_probs=72.5
Q ss_pred CCCCceeeecccEEEeCCCCCCCCCchHHHHHhhCC-CCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELPIYGSNTIWTYRGK-NMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKK 80 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~iY~~~~~~~y~~~-~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~ 80 (93)
.+|+||||+|++|||||||+.+++|+++++..|++. ...++|||||++|+.||+.|+.+++|||||| |||||. ||-
T Consensus 121 ~~~~IYTy~G~iLIavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~m~~~~~~QsIii--SGESGA-GKT 197 (821)
T PTZ00014 121 LKNQIYTTADPLLVAINPFKDLGNTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQTIIV--SGESGA-GKT 197 (821)
T ss_pred cCCCCeeeECCEEEEECCCCCCCCCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHhcCCCceEEE--EcCCCC-Cch
Confidence 578999999999999999999999999999999986 4678999999999999999999999999987 999997 565
Q ss_pred hHHH
Q psy6137 81 EEEK 84 (93)
Q Consensus 81 ~~~~ 84 (93)
|--|
T Consensus 198 e~tK 201 (821)
T PTZ00014 198 EATK 201 (821)
T ss_pred HHHH
Confidence 5433
No 6
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.92 E-value=1.7e-25 Score=182.32 Aligned_cols=80 Identities=21% Similarity=0.323 Sum_probs=74.0
Q ss_pred CCCCceeeecccEEEeCCCCCCCCCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKKE 81 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~~ 81 (93)
.+|+||||+|++|||||||+.+++|++.++..|++....++|||||++|++||+.|+.+++|||||| |||||. ||-|
T Consensus 25 ~~~~IYT~~G~iLIavNPyk~l~iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIii--SGESGA-GKTe 101 (767)
T cd01386 25 AANLIHTCAGPDLLVLNPMAPLALYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRALLETRRDQSIIF--LGRSGA-GKTT 101 (767)
T ss_pred cCCCCeEeECCeEEEECCCCCCCCCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHcCCCceEEE--ecCCCC-CcHH
Confidence 5799999999999999999999999999999999998899999999999999999999999999987 999997 5655
Q ss_pred HHH
Q psy6137 82 EEK 84 (93)
Q Consensus 82 ~~~ 84 (93)
--|
T Consensus 102 ~tK 104 (767)
T cd01386 102 SCK 104 (767)
T ss_pred HHH
Confidence 433
No 7
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=99.92 E-value=1.3e-25 Score=180.86 Aligned_cols=79 Identities=35% Similarity=0.573 Sum_probs=73.6
Q ss_pred CCCCceeeecccEEEeCCCCCCCCCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKKE 81 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~~ 81 (93)
.+|+||||+|++|||||||+++|+|++.++..|+++...++|||||++|++||+.|+.+++|||||| |||||. ||-|
T Consensus 25 ~~~~iYT~~G~iLiavNPy~~l~ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIii--sGESGa-GKTe 101 (674)
T cd01378 25 QNDLIYTYIGPVLISVNPFKQLPIYTDETIELYKGKSRYELPPHIYALADNAYRSMKSENENQCVII--SGESGA-GKTE 101 (674)
T ss_pred hcCCCeeccCCcEEEEcCCCCCCCCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEE--EcCCCC-Ccch
Confidence 4799999999999999999999999999999999999899999999999999999999999999987 999997 5555
Q ss_pred HH
Q psy6137 82 EE 83 (93)
Q Consensus 82 ~~ 83 (93)
--
T Consensus 102 ~~ 103 (674)
T cd01378 102 AA 103 (674)
T ss_pred HH
Confidence 43
No 8
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=99.92 E-value=1.7e-25 Score=180.21 Aligned_cols=80 Identities=38% Similarity=0.620 Sum_probs=73.9
Q ss_pred CCCCceeeecccEEEeCCCCCCCCCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKKE 81 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~~ 81 (93)
.+|+||||+|++|||||||+.+++|+++++..|+++...++|||||++|++||+.|+++++|||||| |||||. ||-|
T Consensus 25 ~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIii--sGESGa-GKTe 101 (671)
T cd01381 25 KKKLIYTYTGSILVAVNPYQILPIYTADEIKLYKNKSIGELPPHIFAISDNAYTNMQREKKNQCIII--SGESGA-GKTE 101 (671)
T ss_pred ccCCCeEeeCCEEEEeCCCccCCCCCHHHHHHHhcCCccccCCCHHHHHHHHHHHHHHcCCCceEEE--EcCCCC-Ceeh
Confidence 5799999999999999999999999999999999998889999999999999999999999999987 999997 5555
Q ss_pred HHH
Q psy6137 82 EEK 84 (93)
Q Consensus 82 ~~~ 84 (93)
--|
T Consensus 102 s~K 104 (671)
T cd01381 102 STK 104 (671)
T ss_pred HHH
Confidence 433
No 9
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=99.92 E-value=1.7e-25 Score=180.32 Aligned_cols=79 Identities=32% Similarity=0.569 Sum_probs=73.4
Q ss_pred CCCCceeeecccEEEeCCCCCCCCCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKKE 81 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~~ 81 (93)
.+|+||||+|++|||||||+.+|+|+++++..|++....++|||||++|++||+.|+.+++|||||| |||||. ||-|
T Consensus 26 ~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIii--sGESGa-GKTe 102 (677)
T cd01387 26 ERNLIYTYIGSILVSVNPYKMFPIYGPEQVQQYAGRALGENPPHLFAIANLAFAKMLDAKQNQCVII--SGESGS-GKTE 102 (677)
T ss_pred cCCCCeEeECCEEEEECCCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEE--EcCCCC-Ceeh
Confidence 5799999999999999999999999999999999998889999999999999999999999999987 999996 5554
Q ss_pred HH
Q psy6137 82 EE 83 (93)
Q Consensus 82 ~~ 83 (93)
--
T Consensus 103 ~~ 104 (677)
T cd01387 103 AT 104 (677)
T ss_pred HH
Confidence 43
No 10
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=99.92 E-value=3e-25 Score=179.26 Aligned_cols=80 Identities=33% Similarity=0.503 Sum_probs=73.0
Q ss_pred CCCCceeeecccEEEeCCCCCCCCCchHHHHHhhCCC-CCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELPIYGSNTIWTYRGKN-MGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKK 80 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~iY~~~~~~~y~~~~-~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~ 80 (93)
.+|+||||+|++|||||||+++++|++.++..|++.. ..++|||||++|++||+.|+.+++|||||| |||||. ||-
T Consensus 32 ~~~~iYT~~G~iLiavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~Ay~~m~~~~~~QsIii--sGESGA-GKT 108 (692)
T cd01385 32 LQGHIYTYAGSILVAVNPFKFLPIYNPKYVRLYENQQRLGKLPPHIFAIADVAYYNMLRKKVNQCIVI--SGESGS-GKT 108 (692)
T ss_pred hcCCCeEeECCEEEEECCCcCCCCCCHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHhcCCCceEEE--ecCCCC-Cch
Confidence 5789999999999999999999999999999999876 678999999999999999999999999987 999997 555
Q ss_pred hHHH
Q psy6137 81 EEEK 84 (93)
Q Consensus 81 ~~~~ 84 (93)
|--|
T Consensus 109 et~K 112 (692)
T cd01385 109 ESTN 112 (692)
T ss_pred HHHH
Confidence 5443
No 11
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=99.92 E-value=3.5e-25 Score=178.48 Aligned_cols=79 Identities=32% Similarity=0.571 Sum_probs=73.4
Q ss_pred CCCCceeeecccEEEeCCCCCCC-CCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELP-IYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKK 80 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~-iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~ 80 (93)
.+|+||||+|++|||||||+.+| +|++.++..|+++...++|||||++|++||+.|+..++|||||| |||||. ||-
T Consensus 26 ~~~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIii--sGESGa-GKT 102 (674)
T cd01384 26 ELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYRAMINEGKSQSILV--SGESGA-GKT 102 (674)
T ss_pred hcCCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHcCCCceEEE--ECCCCC-Cch
Confidence 47899999999999999999999 99999999999999899999999999999999999999999987 999997 555
Q ss_pred hHH
Q psy6137 81 EEE 83 (93)
Q Consensus 81 ~~~ 83 (93)
|--
T Consensus 103 e~~ 105 (674)
T cd01384 103 ETT 105 (674)
T ss_pred hHH
Confidence 543
No 12
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.91 E-value=4.3e-25 Score=177.44 Aligned_cols=77 Identities=39% Similarity=0.630 Sum_probs=64.4
Q ss_pred CCCCceeeecccEEEeCCCCCCCCCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKKE 81 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~~ 81 (93)
.+|+|||++|++||+||||+.+|+|+++++..|+++...++|||||++|++||+.|+++++|||||+ |||||. ||-|
T Consensus 24 ~~~~iyT~~G~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m~~~~~~Q~Iii--sGeSGs-GKTe 100 (689)
T PF00063_consen 24 KKDLIYTYIGPILIAVNPYKPLPLYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQMLRTRQNQSIII--SGESGS-GKTE 100 (689)
T ss_dssp HTT--EEEETTEEEEE--SS--STSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHHHHHTSEEEEEE--EESTTS-SHHH
T ss_pred ccCCccccCCCeEEEECCchhhhhhhhhhhhhhhhhccccccCccchhhhcccccccccccccceee--cccccc-cccc
Confidence 3689999999999999999999999999999999999999999999999999999999999999987 999996 4544
No 13
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.91 E-value=9.9e-25 Score=175.82 Aligned_cols=79 Identities=37% Similarity=0.633 Sum_probs=73.5
Q ss_pred CCCCceeeecccEEEeCCCCCCCCCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKKE 81 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~~ 81 (93)
.+|+||||+|++|||||||+.+++|+++++..|+++...++|||||++|++||+.|+.+++|||||| |||||. ||-|
T Consensus 25 ~~~~iYT~~G~iLiavNPy~~l~~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIii--sGESGa-GKTe 101 (679)
T cd00124 25 KKDLIYTYAGPILIAVNPYKDLPNYGPETIRKYRGKSRSELPPHVFAIADRAYRNMLRDRRNQSIII--SGESGA-GKTE 101 (679)
T ss_pred cCCCCeEeECCEEEEECCCCCCCCCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEE--ecCCCC-CchH
Confidence 4789999999999999999999999999999999998899999999999999999999999999987 999997 5555
Q ss_pred HH
Q psy6137 82 EE 83 (93)
Q Consensus 82 ~~ 83 (93)
--
T Consensus 102 ~~ 103 (679)
T cd00124 102 NT 103 (679)
T ss_pred HH
Confidence 43
No 14
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=99.91 E-value=1.9e-24 Score=175.21 Aligned_cols=79 Identities=35% Similarity=0.645 Sum_probs=73.2
Q ss_pred CCCCceeeecccEEEeCCCCCCC-CCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELP-IYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKK 80 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~-iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~ 80 (93)
.+++||||+|++||+||||+.+| +|++.++..|+++...++|||||++|++||+.|+.+++|||||| |||||. ||-
T Consensus 29 ~~~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIii--sGESGa-GKT 105 (717)
T cd01382 29 SKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKAYRDMKVLKMSQSIIV--SGESGA-GKT 105 (717)
T ss_pred cCCCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHHHHHHHhcCCCCeEEE--ecCCCC-Chh
Confidence 57899999999999999999997 99999999999999899999999999999999999999999987 999997 555
Q ss_pred hHH
Q psy6137 81 EEE 83 (93)
Q Consensus 81 ~~~ 83 (93)
|--
T Consensus 106 es~ 108 (717)
T cd01382 106 ENT 108 (717)
T ss_pred HHH
Confidence 543
No 15
>KOG0164|consensus
Probab=99.90 E-value=2.1e-24 Score=173.31 Aligned_cols=80 Identities=35% Similarity=0.570 Sum_probs=74.3
Q ss_pred CCCCceeeecccEEEeCCCCCCCCCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKKE 81 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~~ 81 (93)
+++.||||+|++||+||||+.++||+++++..|++....+.|||+||+|+.||+.|.+.++||||+| |||||. ||-|
T Consensus 33 ~~g~IYTyIGeV~VsvNPYrql~IYg~~ti~kYkgre~yE~~PHlfAiad~aYrslk~r~rDtcI~I--SGESGA-GKTE 109 (1001)
T KOG0164|consen 33 ENGRIYTYIGEVLVSVNPYRQLNIYGPETIEKYKGREFYERPPHLFAIADAAYRSLKRRSRDTCILI--SGESGA-GKTE 109 (1001)
T ss_pred hcCceEEEEccEEEEecchhhcCccCHHHHHHhCCeeecccCchHHHhHHHHHHHHHhccCCeEEEE--ecCCCC-CccH
Confidence 5799999999999999999999999999999999999999999999999999999999999999976 999996 5555
Q ss_pred HHH
Q psy6137 82 EEK 84 (93)
Q Consensus 82 ~~~ 84 (93)
..|
T Consensus 110 ASK 112 (1001)
T KOG0164|consen 110 ASK 112 (1001)
T ss_pred HHH
Confidence 443
No 16
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=99.90 E-value=2.3e-24 Score=173.71 Aligned_cols=79 Identities=41% Similarity=0.666 Sum_probs=73.3
Q ss_pred CCCCceeeecccEEEeCCCCCCCCCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKKE 81 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~~ 81 (93)
.+|+|||++|++|||||||+.+++|++.++..|++....++|||||++|++||+.|+.+++|||||| |||||. ||-|
T Consensus 31 ~~~~iYT~~G~iLiavNP~~~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIii--sGESGa-GKTe 107 (677)
T smart00242 31 LKDLIYTYIGLVLVAVNPYKQLPIYTDEVIKKYRGKSRGELPPHVFAIADNAYRNMLNDKENQSIII--SGESGA-GKTE 107 (677)
T ss_pred hhCCccccccceEEEecCCccCCCCCHHHHHHccCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEE--ecCCCC-cchH
Confidence 4689999999999999999999999999999999998889999999999999999999999999987 999997 5555
Q ss_pred HH
Q psy6137 82 EE 83 (93)
Q Consensus 82 ~~ 83 (93)
--
T Consensus 108 ~~ 109 (677)
T smart00242 108 NT 109 (677)
T ss_pred HH
Confidence 43
No 17
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=99.90 E-value=6.3e-24 Score=171.31 Aligned_cols=78 Identities=33% Similarity=0.573 Sum_probs=70.1
Q ss_pred CCCCceeeecccEEEeCCCCCCCCCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKKE 81 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~~ 81 (93)
.+++||||+|++|||||||+.+++|++.++..|++.. ..|||||++|++||+.|+.+++|||||| |||||. ||-|
T Consensus 33 ~~~~iYT~~G~iLiavNPy~~l~ly~~~~~~~y~~~~--~~~PHifaiA~~Ay~~m~~~~~~QsIii--sGESGa-GKTe 107 (677)
T cd01383 33 SQDLIYTKAGPVLVAVNPFKEVPLYGNDYIEAYRKKS--NDSPHVYAIADTAYNEMMRDEVNQSIII--SGESGA-GKTE 107 (677)
T ss_pred cCCCCeEEECCEEEEEcCCcCCCCCCHHHHHHhhCCC--CCCCCHHHHHHHHHHHHHHcCCCceEEE--ecCCCC-Ccch
Confidence 5799999999999999999999999999999998754 3699999999999999999999999987 999997 5555
Q ss_pred HHH
Q psy6137 82 EEK 84 (93)
Q Consensus 82 ~~~ 84 (93)
--|
T Consensus 108 ~~K 110 (677)
T cd01383 108 TAK 110 (677)
T ss_pred HHH
Confidence 433
No 18
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=99.89 E-value=1.3e-23 Score=169.03 Aligned_cols=80 Identities=26% Similarity=0.441 Sum_probs=73.6
Q ss_pred CCCCceeeecccEEEeCCCCCCCCCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKKE 81 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~~ 81 (93)
.+|+||||+|++||+||||+.+++|++.++..|++......|||+|++|+.||+.|+..+++||||+ |||||. ||.+
T Consensus 25 ~~~~iYT~~G~iLiavNPyk~l~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIii--sGESGs-GKTe 101 (653)
T cd01379 25 ETNQIYTYVGDILIAVNPFQQLGLYTTQHSRLYTGQKRSSNPPHIFAIADAAYQSLVTYNQDQCIVI--SGESGS-GKTE 101 (653)
T ss_pred cCCCCeEeECCEEEEECCCCCCCCCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCceEEE--ecCCCC-CchH
Confidence 5799999999999999999999999999999999988888999999999999999999999999987 999997 5555
Q ss_pred HHH
Q psy6137 82 EEK 84 (93)
Q Consensus 82 ~~~ 84 (93)
--|
T Consensus 102 t~K 104 (653)
T cd01379 102 SAH 104 (653)
T ss_pred HHH
Confidence 433
No 19
>KOG0162|consensus
Probab=99.88 E-value=3.6e-23 Score=166.69 Aligned_cols=79 Identities=23% Similarity=0.382 Sum_probs=73.8
Q ss_pred CCCCceeeecccEEEeCCCCCCCCCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKKE 81 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~~ 81 (93)
.++.||||+|.+||+||||+.+|+|+...+..|.|+.+.+.||||||+|++.|++|..+++|||||| |||||. ||-+
T Consensus 43 ~n~~IfTYIG~VLISVNPFk~m~~ft~~~~~~YqG~~q~E~pPHiyAladnmY~nM~~~~EnQCVII--SGESGA-GKT~ 119 (1106)
T KOG0162|consen 43 MNGYIFTYIGHVLISVNPFKQMPYFTEKEMELYQGAAQYENPPHIYALADNMYRNMKIDNENQCVII--SGESGA-GKTV 119 (1106)
T ss_pred hcCceEEEeeeEEEeecchhccccchHHHHHHhhchhhccCCchhhhhHHHHHHHhhhccccceEEE--ecCCCC-CchH
Confidence 5789999999999999999999999999999999999999999999999999999999999999987 999996 5554
Q ss_pred HH
Q psy6137 82 EE 83 (93)
Q Consensus 82 ~~ 83 (93)
..
T Consensus 120 aA 121 (1106)
T KOG0162|consen 120 AA 121 (1106)
T ss_pred HH
Confidence 43
No 20
>KOG0163|consensus
Probab=99.85 E-value=2.5e-22 Score=162.43 Aligned_cols=80 Identities=36% Similarity=0.621 Sum_probs=74.5
Q ss_pred CCCCceeeecccEEEeCCCCCCC-CCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELP-IYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKK 80 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~-iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~ 80 (93)
.+|.||||+.+||||||||..++ +|+++++..|+|++.+.+|||||+||+.||+.|.+.+.+||||| |||||. ||-
T Consensus 82 ~k~kIYtYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k~SQSIIV--SGESGA-GKT 158 (1259)
T KOG0163|consen 82 YKDKIYTYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYKLSQSIIV--SGESGA-GKT 158 (1259)
T ss_pred ccCchhhhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHhhcccEEE--ecCCCC-Ccc
Confidence 47899999999999999999998 99999999999999999999999999999999999999999998 999996 565
Q ss_pred hHHH
Q psy6137 81 EEEK 84 (93)
Q Consensus 81 ~~~~ 84 (93)
|..|
T Consensus 159 EstK 162 (1259)
T KOG0163|consen 159 ESTK 162 (1259)
T ss_pred hhHH
Confidence 5544
No 21
>KOG0160|consensus
Probab=99.75 E-value=8.8e-19 Score=143.70 Aligned_cols=73 Identities=38% Similarity=0.635 Sum_probs=68.8
Q ss_pred CCCceeeecccEEEeCCCCCCC-CCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhh
Q psy6137 3 KEEKEKEIGIVLVAINPYTELP-IYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKE 78 (93)
Q Consensus 3 ~~~iYT~~G~iLIaVNP~k~l~-iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~ 78 (93)
.+.||||.|.+|||||||+.+| +|+.+.+..|. .....+.||+|++|+.||+.|..+..||+||| |||||...
T Consensus 34 ~~~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~-~~~~~l~ph~favA~~ay~~m~~~~~~QsIiv--sGESGAgk 107 (862)
T KOG0160|consen 34 QNQIYTYKGIVLIAINPFKRLPHLYGKKMISAYQ-AIQGELSPHLFAVAEEAYRDMTPDGVNQSIIV--SGESGAGK 107 (862)
T ss_pred hcccchhhceeeeeeccccccchhccHHHHHhhc-ccccccCcchhhHHHHHHHHhhhccCCceeee--eCCCCCch
Confidence 4699999999999999999999 99999999999 78888999999999999999999999999988 99999853
No 22
>KOG4229|consensus
Probab=99.64 E-value=1.3e-16 Score=133.29 Aligned_cols=74 Identities=31% Similarity=0.480 Sum_probs=70.3
Q ss_pred CCCCceeeecccEEEeCCCCCCC-CCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELP-IYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEK 77 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~-iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~ 77 (93)
..+.||||+|.+|++||||++++ +|.+..+..|.+....+.|||||++|+.+|++|++...|||||+ |||||..
T Consensus 86 ~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa~ad~~y~~m~~~~~~Qcivi--sGesgsG 160 (1062)
T KOG4229|consen 86 KRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFAIADLAYQDMLREKEDQCIVI--SGESGSG 160 (1062)
T ss_pred ccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCcchhhhhhhHHHhhhhhccceeEEE--ecccCCC
Confidence 46899999999999999999999 99999999999888999999999999999999999999999987 9999964
No 23
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=93.69 E-value=0.13 Score=35.38 Aligned_cols=28 Identities=4% Similarity=-0.098 Sum_probs=22.6
Q ss_pred HHHhHHHHHHHHHhcCCCceEEEeccCCcch
Q psy6137 46 IFAVAEEAYTKMESRQPSIDEVNLYEKEEEE 76 (93)
Q Consensus 46 iyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~ 76 (93)
||.....++..++ ++.|++|+. .|++|.
T Consensus 8 vf~~~~~~v~~~~-~G~n~~i~~--yG~tGs 35 (186)
T cd01363 8 VFRDVGPLLQSAL-DGYNVCIFA--YGQTGS 35 (186)
T ss_pred HHHHHHHHHHHHh-CCcceeEEE--ECCCCC
Confidence 8888887777776 578999987 888874
No 24
>KOG0925|consensus
Probab=91.29 E-value=0.3 Score=39.80 Aligned_cols=54 Identities=17% Similarity=0.038 Sum_probs=35.6
Q ss_pred cEEEeCCCCCCCCCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcch
Q psy6137 13 VLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEE 76 (93)
Q Consensus 13 iLIaVNP~k~l~iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~ 76 (93)
...++|||...| |++.....+. .+.++|-+-+. +..|-.-..||+||+ +||.|.
T Consensus 20 ~~k~~Npf~~~p-~s~rY~~ilk--~R~~LPvw~~k-----~~F~~~l~~nQ~~v~--vGetgs 73 (699)
T KOG0925|consen 20 NAKAINPFNGKP-YSQRYYDILK--KRRELPVWEQK-----EEFLKLLLNNQIIVL--VGETGS 73 (699)
T ss_pred hhhhcCCCCCCc-CcHHHHHHHH--HHhcCchHHhH-----HHHHHHHhcCceEEE--EecCCC
Confidence 344599999887 7776666654 34456655442 334555568999998 888774
No 25
>PF02495 7kD_coat: 7kD viral coat protein; InterPro: IPR003411 This family consists of a 7 kDa coat protein from Carlavirus and Potexvirus [].
Probab=81.69 E-value=2.5 Score=24.18 Aligned_cols=16 Identities=13% Similarity=0.009 Sum_probs=11.9
Q ss_pred hcCCCceEEEeccCCcc
Q psy6137 59 SRQPSIDEVNLYEKEEE 75 (93)
Q Consensus 59 ~~~~nQsIvi~~sGESg 75 (93)
....++|+| +|||||=
T Consensus 21 ~~~~~~C~I-~ItGeSv 36 (59)
T PF02495_consen 21 SPSSPSCVI-VITGESV 36 (59)
T ss_pred cCCCCCcEE-EEeCcEE
Confidence 566777776 4999983
No 26
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=61.05 E-value=8.6 Score=29.18 Aligned_cols=16 Identities=13% Similarity=0.075 Sum_probs=13.4
Q ss_pred CCCceEEEeccCCcch
Q psy6137 61 QPSIDEVNLYEKEEEE 76 (93)
Q Consensus 61 ~~nQsIvi~~sGESg~ 76 (93)
+....+++||+||||-
T Consensus 19 ~~~~klLLLG~geSGK 34 (342)
T smart00275 19 KREVKLLLLGAGESGK 34 (342)
T ss_pred hcchheeeeecCCCcc
Confidence 4567789999999996
No 27
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=59.43 E-value=5.4 Score=30.43 Aligned_cols=17 Identities=18% Similarity=0.091 Sum_probs=13.9
Q ss_pred cCCCceEEEeccCCcch
Q psy6137 60 RQPSIDEVNLYEKEEEE 76 (93)
Q Consensus 60 ~~~nQsIvi~~sGESg~ 76 (93)
.+....|++||+||||-
T Consensus 55 ~~~~~kiLLLG~geSGK 71 (389)
T PF00503_consen 55 SKREIKILLLGSGESGK 71 (389)
T ss_dssp HHEEEEEEEEESTTSSH
T ss_pred hhccceEEEECCCCcch
Confidence 34677889999999996
No 28
>KOG0082|consensus
Probab=53.47 E-value=13 Score=28.82 Aligned_cols=26 Identities=12% Similarity=0.038 Sum_probs=18.8
Q ss_pred HHHHHHHhcCCCceEEEeccCCcchh
Q psy6137 52 EAYTKMESRQPSIDEVNLYEKEEEEK 77 (93)
Q Consensus 52 ~Ay~~m~~~~~nQsIvi~~sGESg~~ 77 (93)
+....-......+-+++|++||||--
T Consensus 22 ~l~~~~~~~~~~iKlLLLGageSGKS 47 (354)
T KOG0082|consen 22 QLKKEKKKEKKIIKLLLLGAGESGKS 47 (354)
T ss_pred HHHHHHHhhhhheeeeeecCCCCchH
Confidence 33333445667888999999999964
No 29
>KOG0920|consensus
Probab=34.05 E-value=17 Score=31.65 Aligned_cols=15 Identities=13% Similarity=0.000 Sum_probs=10.2
Q ss_pred CCceEEEeccCCcch
Q psy6137 62 PSIDEVNLYEKEEEE 76 (93)
Q Consensus 62 ~nQsIvi~~sGESg~ 76 (93)
-+++.|++||||+|-
T Consensus 185 i~~~qVvvIsGeTGc 199 (924)
T KOG0920|consen 185 IEENQVVVISGETGC 199 (924)
T ss_pred HHhCceEEEeCCCCC
Confidence 344445567999996
No 30
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=32.62 E-value=38 Score=20.15 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=17.0
Q ss_pred CCCCCceeeecc-cEEEeCCCC
Q psy6137 1 MRKEEKEKEIGI-VLVAINPYT 21 (93)
Q Consensus 1 ~~~~~iYT~~G~-iLIaVNP~k 21 (93)
|+...|....|+ ++|.+.||.
T Consensus 38 mr~~rI~I~~GD~V~Ve~spyd 59 (68)
T TIGR00008 38 IRMHYIRILPGDKVKVELSPYD 59 (68)
T ss_pred chhccEEECCCCEEEEEECccc
Confidence 455678888997 889999985
No 31
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=32.33 E-value=96 Score=21.17 Aligned_cols=33 Identities=12% Similarity=-0.066 Sum_probs=20.3
Q ss_pred hhHHHhHHHHHHHHHhcCCCceEEEeccCCc-ch
Q psy6137 44 PHIFAVAEEAYTKMESRQPSIDEVNLYEKEE-EE 76 (93)
Q Consensus 44 PHiyaiA~~Ay~~m~~~~~nQsIvi~~sGES-g~ 76 (93)
|.+-..+-.....+..+-.+..|+|++.||. |.
T Consensus 25 p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~ 58 (168)
T cd01080 25 PCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGK 58 (168)
T ss_pred CChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHH
Confidence 3333333334344444567888999999995 65
No 32
>KOG2862|consensus
Probab=32.16 E-value=1.5e+02 Score=23.27 Aligned_cols=51 Identities=8% Similarity=0.040 Sum_probs=38.4
Q ss_pred CchHHHHHhhCCCCCCCChhHHHhHHHHHHHH---HhcCCCceEEEeccCCcch
Q psy6137 26 YGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM---ESRQPSIDEVNLYEKEEEE 76 (93)
Q Consensus 26 Y~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m---~~~~~nQsIvi~~sGESg~ 76 (93)
.+..++..-.......+.|-.++|-+.....+ +.+...|..|+.+||-||-
T Consensus 28 l~~~V~~A~~~~~lgh~sPe~~qIm~~v~egikyVFkT~n~~tf~isgsGh~g~ 81 (385)
T KOG2862|consen 28 LSGRVQEAMSRPSLGHMSPEFVQIMDEVLEGIKYVFKTANAQTFVISGSGHSGW 81 (385)
T ss_pred CCHHHHHhhcCCccccCCHHHHHHHHHHHHHHHHHhccCCCceEEEecCCcchH
Confidence 44566665555566788899999988876654 5777889999988998884
No 33
>KOG4848|consensus
Probab=30.10 E-value=30 Score=24.97 Aligned_cols=17 Identities=24% Similarity=0.556 Sum_probs=10.1
Q ss_pred CCCChhHHHhHHHHHHH
Q psy6137 40 GDLDPHIFAVAEEAYTK 56 (93)
Q Consensus 40 ~~lpPHiyaiA~~Ay~~ 56 (93)
..+|||-|..-..+|+.
T Consensus 58 ~~~pP~~w~~~~~~y~r 74 (225)
T KOG4848|consen 58 GGMPPVQWDSERRAYRR 74 (225)
T ss_pred CCCCChhhhhccHHHHH
Confidence 35567766666566654
No 34
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=28.09 E-value=19 Score=27.18 Aligned_cols=32 Identities=9% Similarity=0.068 Sum_probs=17.6
Q ss_pred hhHHHhHHHHHHHHHhcCCCceEEEeccCCcch
Q psy6137 44 PHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEE 76 (93)
Q Consensus 44 PHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~ 76 (93)
|.++..++-.... -......+|+||++|.|+.
T Consensus 172 ~~v~Hss~~~~~~-~~~~~~~~V~VVGgGQSAA 203 (341)
T PF13434_consen 172 PRVFHSSEYLSRI-DQSLAGKRVAVVGGGQSAA 203 (341)
T ss_dssp TTEEEGGGHHHHH-T-----EEEEEE-SSHHHH
T ss_pred CCEEEehHhhhcc-ccccCCCeEEEECCcHhHH
Confidence 6666666544322 1256788999999999975
No 35
>KOG0099|consensus
Probab=27.69 E-value=24 Score=27.08 Aligned_cols=15 Identities=13% Similarity=-0.037 Sum_probs=11.9
Q ss_pred CceEEEeccCCcchh
Q psy6137 63 SIDEVNLYEKEEEEK 77 (93)
Q Consensus 63 nQsIvi~~sGESg~~ 77 (93)
...+++|+.||||-.
T Consensus 40 ThrlLLLGagESGKs 54 (379)
T KOG0099|consen 40 THRLLLLGAGESGKS 54 (379)
T ss_pred hHHhheeccccccch
Confidence 455788899999964
No 36
>KOG0085|consensus
Probab=27.00 E-value=61 Score=24.54 Aligned_cols=17 Identities=12% Similarity=0.065 Sum_probs=12.7
Q ss_pred CCCceEEEeccCCcchh
Q psy6137 61 QPSIDEVNLYEKEEEEK 77 (93)
Q Consensus 61 ~~nQsIvi~~sGESg~~ 77 (93)
++.--.+++++||||..
T Consensus 37 rrelkllllgtgesgks 53 (359)
T KOG0085|consen 37 RRELKLLLLGTGESGKS 53 (359)
T ss_pred hhhheeeeecCCCcchh
Confidence 34556778899999963
No 37
>PF14736 N_Asn_amidohyd: Protein N-terminal asparagine amidohydrolase
Probab=26.05 E-value=2.7e+02 Score=20.87 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=35.2
Q ss_pred cEEEeCCCCCCCCC--------chHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhc
Q psy6137 13 VLVAINPYTELPIY--------GSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESR 60 (93)
Q Consensus 13 iLIaVNP~k~l~iY--------~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~ 60 (93)
=.+.|.||.+.|.- ++...-.+..++..--|||-..-..++++.|...
T Consensus 193 ~~l~I~Pf~~~p~~~~~~~l~~~D~~iL~~lSTSP~aEpp~Fv~~ir~~l~fl~~h 248 (274)
T PF14736_consen 193 DQLRIGPFHWRPFPHADFWLSQSDSEILQYLSTSPEAEPPHFVEHIRSTLRFLQEH 248 (274)
T ss_pred CeEEECCCcCCCccChHHHhhCCHHHHHHhcCCCcCCCCchHHHHHHHHHHHHHHC
Confidence 45778999887633 3445555666777778999998888888888754
No 38
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=25.32 E-value=51 Score=23.33 Aligned_cols=15 Identities=60% Similarity=0.926 Sum_probs=11.2
Q ss_pred hhhhhHHHHHHHhhh
Q psy6137 77 KEKKEEEKEEKRKKK 91 (93)
Q Consensus 77 ~~~~~~~~~~~~~~~ 91 (93)
++|..+++||||.++
T Consensus 104 kEKq~q~EEEKRrqk 118 (190)
T PF06936_consen 104 KEKQKQEEEEKRRQK 118 (190)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 677777778888765
No 39
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=24.60 E-value=45 Score=21.56 Aligned_cols=12 Identities=42% Similarity=0.822 Sum_probs=6.1
Q ss_pred hhhhhhHHHHHH
Q psy6137 76 EKEKKEEEKEEK 87 (93)
Q Consensus 76 ~~~~~~~~~~~~ 87 (93)
|.+|+|++.+++
T Consensus 51 ER~K~E~~~q~r 62 (121)
T PF10669_consen 51 ERSKKEEKRQKR 62 (121)
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
No 40
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=23.47 E-value=1.7e+02 Score=26.06 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=35.2
Q ss_pred eeecccEEEeCCCCCCCCCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEE
Q psy6137 8 KEIGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVN 68 (93)
Q Consensus 8 T~~G~iLIaVNP~k~l~iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi 68 (93)
...|+++|.+-|-+- +..+....|++... |||...+|- |..|.....-.+||=
T Consensus 379 i~~GNV~i~~QP~RG---~~~d~~~lyHd~~l---pP~HqYlAf--Y~wl~~~f~ADAviH 431 (1098)
T PF02514_consen 379 IRFGNVFIGPQPPRG---WEEDPMKLYHDPDL---PPPHQYLAF--YLWLQEVFGADAVIH 431 (1098)
T ss_pred eeeCCEEEEeCCCCC---cCCCcchhhcCCCC---CcCchHHHH--HHHHHhhcCCCEEEE
Confidence 567899999999665 55566677765433 444444653 667776667777765
No 41
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=23.25 E-value=66 Score=21.24 Aligned_cols=26 Identities=27% Similarity=0.137 Sum_probs=18.6
Q ss_pred EEEeccCCcchhhhhhHHHHHHHhhh
Q psy6137 66 EVNLYEKEEEEKEKKEEEKEEKRKKK 91 (93)
Q Consensus 66 Ivi~~sGESg~~~~~~~~~~~~~~~~ 91 (93)
.|+++||-||--+-.++.++-=|++.
T Consensus 64 ~ivvGTG~~G~l~l~~ea~e~~r~k~ 89 (121)
T COG1504 64 VIVVGTGQSGMLELSEEAREFFRKKG 89 (121)
T ss_pred EEEEecCceeEEEeCHHHHHHHHhcC
Confidence 34469999999887777766555543
No 42
>PHA00198 nonstructural protein
Probab=22.72 E-value=55 Score=20.25 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=22.3
Q ss_pred CCChhHHHhHHHHHHHHHhcCCCceEE
Q psy6137 41 DLDPHIFAVAEEAYTKMESRQPSIDEV 67 (93)
Q Consensus 41 ~lpPHiyaiA~~Ay~~m~~~~~nQsIv 67 (93)
..+-|--.-|.++|+.|+.+..+|+++
T Consensus 19 pF~~~~~gaAiR~F~d~v~D~~skn~~ 45 (86)
T PHA00198 19 PFFMQATGAAIRAFSDMVNDDPSKNQF 45 (86)
T ss_pred cccccccHHHHHHHHHHHccCcchhhh
Confidence 345677788999999999998888876
No 43
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=22.43 E-value=66 Score=17.82 Aligned_cols=12 Identities=58% Similarity=0.689 Sum_probs=6.1
Q ss_pred hhhhHHHHHHHh
Q psy6137 78 EKKEEEKEEKRK 89 (93)
Q Consensus 78 ~~~~~~~~~~~~ 89 (93)
|||.+.|+.++|
T Consensus 34 gKkk~KKeie~k 45 (49)
T PF11044_consen 34 GKKKEKKEIERK 45 (49)
T ss_pred hhhhhHHHHHHH
Confidence 455555555444
No 44
>COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid [General function prediction only]
Probab=21.40 E-value=98 Score=20.42 Aligned_cols=30 Identities=13% Similarity=0.105 Sum_probs=22.1
Q ss_pred hhHHHhHHHHHHHHHhcCCCceEEEeccCCcch
Q psy6137 44 PHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEE 76 (93)
Q Consensus 44 PHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~ 76 (93)
.-+|..+++++..|-.+.-.|.- |.|++|-
T Consensus 50 a~~~g~~er~~~~l~~g~leqi~---I~g~~g~ 79 (119)
T COG2018 50 ATALGLAERAADELGGGELEQIM---IEGKKGK 79 (119)
T ss_pred HHHHHHhHHHHHHhCCCCceEEE---EeccccE
Confidence 56889999999888766666654 4788773
No 45
>KOG2884|consensus
Probab=21.08 E-value=2.3e+02 Score=21.00 Aligned_cols=47 Identities=26% Similarity=0.175 Sum_probs=24.6
Q ss_pred hHHHhHHHHHHHHH-hcCCC--ceEEEeccCCcchhhhhhHHHHHHHhhhc
Q psy6137 45 HIFAVAEEAYTKME-SRQPS--IDEVNLYEKEEEEKEKKEEEKEEKRKKKE 92 (93)
Q Consensus 45 HiyaiA~~Ay~~m~-~~~~n--QsIvi~~sGESg~~~~~~~~~~~~~~~~~ 92 (93)
++-+.-+.|...+- |++.+ |.||+.+--+--+-|| +-.+--||-||+
T Consensus 86 ~~~~~i~iA~lalkhRqnk~~~~riVvFvGSpi~e~ek-eLv~~akrlkk~ 135 (259)
T KOG2884|consen 86 NFMTGIQIAQLALKHRQNKNQKQRIVVFVGSPIEESEK-ELVKLAKRLKKN 135 (259)
T ss_pred cHHHHHHHHHHHHHhhcCCCcceEEEEEecCcchhhHH-HHHHHHHHHHhc
Confidence 44444444544443 44455 8887643333333333 666667777764
No 46
>KOG1680|consensus
Probab=20.50 E-value=2.3e+02 Score=21.53 Aligned_cols=21 Identities=24% Similarity=0.053 Sum_probs=16.1
Q ss_pred HHHHHHHhcCCCceEEEeccC
Q psy6137 52 EAYTKMESRQPSIDEVNLYEK 72 (93)
Q Consensus 52 ~Ay~~m~~~~~nQsIvi~~sG 72 (93)
.|+..+..|...+.||+-++|
T Consensus 71 ~A~~~~e~D~s~~viVltG~g 91 (290)
T KOG1680|consen 71 EAFKDFESDDSVGVIVLTGSG 91 (290)
T ss_pred HHHHHhhccCcccEEEEEcCC
Confidence 677778888889999884554
No 47
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=20.12 E-value=71 Score=25.02 Aligned_cols=16 Identities=13% Similarity=-0.047 Sum_probs=12.9
Q ss_pred CCCceEEEeccCCcch
Q psy6137 61 QPSIDEVNLYEKEEEE 76 (93)
Q Consensus 61 ~~nQsIvi~~sGESg~ 76 (93)
..+|.+.+|+|||-|-
T Consensus 10 ~~a~kvmLLGSGELGK 25 (394)
T COG0027 10 PQATKVMLLGSGELGK 25 (394)
T ss_pred CCCeEEEEecCCccch
Confidence 4678888899999883
Done!