Query psy6137
Match_columns 93
No_of_seqs 126 out of 1029
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 18:33:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6137.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6137hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4db1_A Myosin-7; S1DC, cardiac 99.9 8E-27 2.7E-31 189.2 8.1 80 2-84 110-189 (783)
2 1lkx_A Myosin IE heavy chain; 99.9 1.1E-26 3.8E-31 186.5 7.8 78 2-82 33-110 (697)
3 2ycu_A Non muscle myosin 2C, a 99.9 1.5E-26 5E-31 191.2 8.6 80 2-84 85-164 (995)
4 4anj_A Unconventional myosin-V 99.9 1.4E-26 4.9E-31 192.0 8.6 79 2-83 82-161 (1052)
5 1w9i_A Myosin II heavy chain; 99.9 2E-26 6.9E-31 186.6 8.1 79 2-83 111-189 (770)
6 1kk8_A Myosin heavy chain, str 99.9 1.9E-26 6.3E-31 188.1 7.5 79 2-83 108-186 (837)
7 1w7j_A Myosin VA; motor protei 99.9 2.3E-26 7.7E-31 186.8 8.0 79 2-83 95-173 (795)
8 1i84_S Smooth muscle myosin he 99.9 2.7E-26 9.2E-31 191.4 8.4 78 3-83 109-186 (1184)
9 2dfs_A Myosin-5A; myosin-V, in 99.9 2.1E-26 7.3E-31 191.3 7.6 79 2-83 95-173 (1080)
10 2v26_A Myosin VI; calmodulin-b 99.9 3.7E-26 1.3E-30 185.3 8.8 79 2-83 78-157 (784)
11 1g8x_A Myosin II heavy chain f 99.9 4.4E-26 1.5E-30 188.6 8.6 79 2-83 111-189 (1010)
12 3ohm_A Guanine nucleotide-bind 65.9 2.4 8.4E-05 30.9 1.6 16 61-76 5-20 (327)
13 1azs_C GS-alpha; complex (lyas 60.7 3.2 0.00011 31.2 1.4 16 61-76 38-53 (402)
14 4fid_A G protein alpha subunit 59.6 4.2 0.00014 29.9 1.8 16 62-77 4-19 (340)
15 1cip_A Protein (guanine nucleo 59.4 3.5 0.00012 30.2 1.4 16 61-76 30-45 (353)
16 2xtz_A Guanine nucleotide-bind 42.8 5.8 0.0002 29.1 0.3 17 60-76 6-22 (354)
17 1zcb_A G alpha I/13; GTP-bindi 36.2 18 0.00062 26.4 2.1 16 61-76 31-46 (362)
18 2p65_A Hypothetical protein PF 26.9 1.1E+02 0.0037 18.4 4.9 16 59-76 39-54 (187)
19 1jbk_A CLPB protein; beta barr 21.2 45 0.0015 20.1 1.7 15 60-76 40-54 (195)
No 1
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=99.93 E-value=8e-27 Score=189.18 Aligned_cols=80 Identities=28% Similarity=0.445 Sum_probs=74.2
Q ss_pred CCCCceeeecccEEEeCCCCCCCCCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKKE 81 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~~ 81 (93)
.+++||||+|++|||||||+++|+|++.++..|+++...++|||||++|++||+.|+++++|||||| |||||. ||-|
T Consensus 110 ~~~~IYTy~G~iLvavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIii--SGESGA-GKTe 186 (783)
T 4db1_A 110 GSWMIYTYSGLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILI--TGESGA-GKTV 186 (783)
T ss_dssp HTTCCEEEETTEEEEECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEE--ECSTTS-SHHH
T ss_pred cCCceEEecCceeEecCCCccCCCCCHHHHHHhcCCCcCCCCchhhHHHHHHHHHHHhhCCCceEEE--eCCCCC-CCch
Confidence 3689999999999999999999999999999999999999999999999999999999999999987 999996 6655
Q ss_pred HHH
Q psy6137 82 EEK 84 (93)
Q Consensus 82 ~~~ 84 (93)
--|
T Consensus 187 ~tK 189 (783)
T 4db1_A 187 NTK 189 (783)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 2
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=99.93 E-value=1.1e-26 Score=186.52 Aligned_cols=78 Identities=28% Similarity=0.489 Sum_probs=72.9
Q ss_pred CCCCceeeecccEEEeCCCCCCCCCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKKE 81 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~~ 81 (93)
.+++||||+|++|||||||+++|+|+++++..|+++...++|||||++|++||+.|+++++|||||| |||||. ||-|
T Consensus 33 ~~~~IYTy~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIii--sGESGA-GKTe 109 (697)
T 1lkx_A 33 KSDNIYTYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVII--SGESGA-GKTE 109 (697)
T ss_dssp HTTCCEEESSSCEEEECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEE--ECSTTS-SHHH
T ss_pred hcCCcEEeeCCeEEEEcCCcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEe--cCCCCC-Cchh
Confidence 3689999999999999999999999999999999999999999999999999999999999999987 999996 5554
Q ss_pred H
Q psy6137 82 E 82 (93)
Q Consensus 82 ~ 82 (93)
-
T Consensus 110 ~ 110 (697)
T 1lkx_A 110 A 110 (697)
T ss_dssp H
T ss_pred h
Confidence 4
No 3
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=99.93 E-value=1.5e-26 Score=191.18 Aligned_cols=80 Identities=33% Similarity=0.490 Sum_probs=74.3
Q ss_pred CCCCceeeecccEEEeCCCCCCCCCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKKE 81 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~~ 81 (93)
.+++||||+|++|||||||+++|+|++.++..|+++...++|||||++|++||++|+++++|||||| |||||. ||-|
T Consensus 85 ~~~~iYTy~G~ilvavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIii--sGESGA-GKTe 161 (995)
T 2ycu_A 85 YSGLIYTYSGLFCVVINPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILC--TGESGA-GKTE 161 (995)
T ss_dssp HTTCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEE--ECBTTS-SHHH
T ss_pred hcCceeeecCceeeeeCCccccCCCCHHHHHHhcCCccCCCCchHHHHhHHHHHHHHhcCCCcEEEe--cCCCCC-Cchh
Confidence 3689999999999999999999999999999999999999999999999999999999999999987 999997 6665
Q ss_pred HHH
Q psy6137 82 EEK 84 (93)
Q Consensus 82 ~~~ 84 (93)
--|
T Consensus 162 ~~K 164 (995)
T 2ycu_A 162 NTK 164 (995)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
No 4
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=99.93 E-value=1.4e-26 Score=191.97 Aligned_cols=79 Identities=34% Similarity=0.631 Sum_probs=73.3
Q ss_pred CCCCceeeecccEEEeCCCCCCC-CCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELP-IYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKK 80 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~-iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~ 80 (93)
.+|+||||+|++|||||||+.+| +|++.++..|+++...++|||||++|++||+.|+++++|||||| |||||. ||-
T Consensus 82 ~~~~IYTy~G~iLIaVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIii--SGESGA-GKT 158 (1052)
T 4anj_A 82 SKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIV--SGESGA-GKT 158 (1052)
T ss_dssp HTTCCEEEETTEEEEECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEE--ECSTTS-SHH
T ss_pred cCCCcEEeECCEEEEECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEE--ecCCCC-CHH
Confidence 36899999999999999999997 99999999999999999999999999999999999999999987 999996 555
Q ss_pred hHH
Q psy6137 81 EEE 83 (93)
Q Consensus 81 ~~~ 83 (93)
|--
T Consensus 159 est 161 (1052)
T 4anj_A 159 ENT 161 (1052)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 5
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=99.93 E-value=2e-26 Score=186.55 Aligned_cols=79 Identities=27% Similarity=0.510 Sum_probs=73.4
Q ss_pred CCCCceeeecccEEEeCCCCCCCCCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKKE 81 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~~ 81 (93)
.+++||||+|++|||||||+++|+|++.++..|+++...++|||||++|++||+.|+++++|||||| |||||. ||-|
T Consensus 111 ~~~~IYTy~G~iLvavNPyk~l~iY~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIii--sGESGA-GKTe 187 (770)
T 1w9i_A 111 NQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLI--TGESGA-GKTE 187 (770)
T ss_dssp HTTCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEE--ECSTTS-SHHH
T ss_pred hcCCceeccCceeEEecCCccccCCCHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHhhcCCcEEEE--ecCCCC-cchH
Confidence 3689999999999999999999999999999999999999999999999999999999999999987 999996 5555
Q ss_pred HH
Q psy6137 82 EE 83 (93)
Q Consensus 82 ~~ 83 (93)
--
T Consensus 188 ~t 189 (770)
T 1w9i_A 188 NT 189 (770)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 6
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=99.93 E-value=1.9e-26 Score=188.06 Aligned_cols=79 Identities=32% Similarity=0.532 Sum_probs=73.4
Q ss_pred CCCCceeeecccEEEeCCCCCCCCCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKKE 81 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~~ 81 (93)
.+++||||+|++|||||||+++|+|++.++..|+++...++|||||++|++||++|+++++|||||| |||||. ||-|
T Consensus 108 ~~~~IYTy~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIii--SGESGA-GKTe 184 (837)
T 1kk8_A 108 TSGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLI--TGESGA-GKTE 184 (837)
T ss_dssp HTTCCEEEETTEEEEECCSSCCSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEE--ECSTTS-SHHH
T ss_pred hcCCceeeccceeEEeCCCcCCCCCCHHHHHHhcCCCcCCCCCcHHHHHHHHHHHHHhcCCCcEEEE--eCCCCC-Cchh
Confidence 3689999999999999999999999999999999999999999999999999999999999999987 999997 5554
Q ss_pred HH
Q psy6137 82 EE 83 (93)
Q Consensus 82 ~~ 83 (93)
--
T Consensus 185 ~t 186 (837)
T 1kk8_A 185 NT 186 (837)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 7
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=99.93 E-value=2.3e-26 Score=186.78 Aligned_cols=79 Identities=47% Similarity=0.720 Sum_probs=73.4
Q ss_pred CCCCceeeecccEEEeCCCCCCCCCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKKE 81 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~~ 81 (93)
.+++||||+|++|||||||+++|+|+++++..|+++...++|||||++|++||+.|+++++|||||| |||||. ||-|
T Consensus 95 ~~~~IYTy~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIii--sGESGA-GKTe 171 (795)
T 1w7j_A 95 DSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIV--SGESGA-GKTV 171 (795)
T ss_dssp HHCCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEE--ECSTTS-SHHH
T ss_pred hcccchhccCcceEEecCccccCcCCHHHHHHHcCCCccCCCccHhHHHHHHHHHhHhcCCCeEEEE--eCCCCC-Ccch
Confidence 4689999999999999999999999999999999999999999999999999999999999999987 999996 5555
Q ss_pred HH
Q psy6137 82 EE 83 (93)
Q Consensus 82 ~~ 83 (93)
--
T Consensus 172 ~t 173 (795)
T 1w7j_A 172 SA 173 (795)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.93 E-value=2.7e-26 Score=191.44 Aligned_cols=78 Identities=32% Similarity=0.513 Sum_probs=72.8
Q ss_pred CCCceeeecccEEEeCCCCCCCCCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhhhH
Q psy6137 3 KEEKEKEIGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKKEE 82 (93)
Q Consensus 3 ~~~iYT~~G~iLIaVNP~k~l~iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~~~ 82 (93)
.++||||+|++|||||||+++|+|++.++..|+++...++|||||+||+.||++|+++++|||||| |||||. ||-|-
T Consensus 109 ~~~iyT~~g~~li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~aia~~ay~~m~~~~~~Q~i~i--sGeSGa-GKTe~ 185 (1184)
T 1i84_S 109 SGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILC--TGESGA-GKTEN 185 (1184)
T ss_dssp HTCCEEEETTEEEEECCCSCCSCCSHHHHHHHSSCCSSSSCCCHHHHHHHHHHHHHHHTCCEEEEC--CCSTTS-STTHH
T ss_pred CCCcEEecCcceeeeCCCcCCCCCCHHHHHHhcCcccccCCccHhhhHHHHHHHHHhcCCCcEEEE--ecCCCC-CccHH
Confidence 589999999999999999999999999999999999999999999999999999999999999987 999996 55544
Q ss_pred H
Q psy6137 83 E 83 (93)
Q Consensus 83 ~ 83 (93)
-
T Consensus 186 ~ 186 (1184)
T 1i84_S 186 T 186 (1184)
T ss_dssp H
T ss_pred H
Confidence 3
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.93 E-value=2.1e-26 Score=191.35 Aligned_cols=79 Identities=47% Similarity=0.720 Sum_probs=73.7
Q ss_pred CCCCceeeecccEEEeCCCCCCCCCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKKE 81 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~~ 81 (93)
.+++||||+|++|||||||+++|+|+++++..|++....++|||||++|++||+.|+++++|||||| |||||. ||-|
T Consensus 95 ~~~~iYTy~G~iLiavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIii--sGESGA-GKTe 171 (1080)
T 2dfs_A 95 DSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIV--SGESGA-GKTV 171 (1080)
T ss_dssp TTCCCEEEETTEEEEECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEE--ECSTTS-SHHH
T ss_pred hcCCchhccCceeEEecCCcccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCcEEEE--cCCCCC-Cccc
Confidence 5799999999999999999999999999999999999999999999999999999999999999987 999996 5554
Q ss_pred HH
Q psy6137 82 EE 83 (93)
Q Consensus 82 ~~ 83 (93)
--
T Consensus 172 ~~ 173 (1080)
T 2dfs_A 172 SA 173 (1080)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 10
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=99.93 E-value=3.7e-26 Score=185.30 Aligned_cols=79 Identities=33% Similarity=0.596 Sum_probs=73.0
Q ss_pred CCCCceeeecccEEEeCCCCCC-CCCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTEL-PIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKK 80 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l-~iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~ 80 (93)
.+++||||+|++|||||||+++ ++|++.++..|+++...++|||||++|++||+.|+++++|||||| |||||. ||-
T Consensus 78 ~~~~IYTy~G~iLiaVNPyk~l~~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIii--SGESGA-GKT 154 (784)
T 2v26_A 78 SKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIV--SGESGA-GKT 154 (784)
T ss_dssp HTTCCEEEETTEEEEECCSSCCTTTTSHHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEE--ECSTTS-SHH
T ss_pred hcCceeeeccceEEEecCCcCcCCCCCHHHHHHHhCCCcccCCchHHHHHHHHHHHHHhcCCCcEEEE--cCCCCC-Cce
Confidence 3689999999999999999999 699999999999999999999999999999999999999999987 999997 555
Q ss_pred hHH
Q psy6137 81 EEE 83 (93)
Q Consensus 81 ~~~ 83 (93)
|--
T Consensus 155 e~t 157 (784)
T 2v26_A 155 ENT 157 (784)
T ss_dssp HHH
T ss_pred ehH
Confidence 443
No 11
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=99.93 E-value=4.4e-26 Score=188.59 Aligned_cols=79 Identities=27% Similarity=0.510 Sum_probs=73.6
Q ss_pred CCCCceeeecccEEEeCCCCCCCCCchHHHHHhhCCCCCCCChhHHHhHHHHHHHHHhcCCCceEEEeccCCcchhhhhh
Q psy6137 2 RKEEKEKEIGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKKE 81 (93)
Q Consensus 2 ~~~~iYT~~G~iLIaVNP~k~l~iY~~~~~~~y~~~~~~~lpPHiyaiA~~Ay~~m~~~~~nQsIvi~~sGESg~~~~~~ 81 (93)
.+++||||+|++|||||||+++|+|++.++..|+++...++|||||++|++||+.|+++++|||||| |||||. ||-|
T Consensus 111 ~~~~iYTy~G~ilvavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIii--sGESGA-GKTe 187 (1010)
T 1g8x_A 111 NQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLI--TGESGA-GKTE 187 (1010)
T ss_dssp TTTCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHTCCEEEEE--EESTTS-SHHH
T ss_pred hhCCceeccCceeEEecCCccccCCCHHHHHHhcCCCccCCCccHHHHHHHHHHHHHhcCCCeEEEE--eCCCCC-Ccch
Confidence 4689999999999999999999999999999999999999999999999999999999999999987 999996 5554
Q ss_pred HH
Q psy6137 82 EE 83 (93)
Q Consensus 82 ~~ 83 (93)
--
T Consensus 188 ~~ 189 (1010)
T 1g8x_A 188 NT 189 (1010)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 12
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=65.95 E-value=2.4 Score=30.90 Aligned_cols=16 Identities=13% Similarity=0.067 Sum_probs=12.6
Q ss_pred CCCceEEEeccCCcch
Q psy6137 61 QPSIDEVNLYEKEEEE 76 (93)
Q Consensus 61 ~~nQsIvi~~sGESg~ 76 (93)
+...-+++|++||||-
T Consensus 5 ~~~~klLlLG~geSGK 20 (327)
T 3ohm_A 5 RRELKLLLLGTGESGK 20 (327)
T ss_dssp CCEEEEEEECSTTSSH
T ss_pred cccceEEEEcCCCccH
Confidence 3455678889999996
No 13
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=60.68 E-value=3.2 Score=31.19 Aligned_cols=16 Identities=13% Similarity=0.001 Sum_probs=13.3
Q ss_pred CCCceEEEeccCCcch
Q psy6137 61 QPSIDEVNLYEKEEEE 76 (93)
Q Consensus 61 ~~nQsIvi~~sGESg~ 76 (93)
+..+-+++|++||||-
T Consensus 38 ~~~~klLLLG~geSGK 53 (402)
T 1azs_C 38 RATHRLLLLGAGESGK 53 (402)
T ss_dssp TTEEEEEEEESTTSSH
T ss_pred hccceEEEecCCCCch
Confidence 4567889999999995
No 14
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=59.58 E-value=4.2 Score=29.87 Aligned_cols=16 Identities=19% Similarity=0.084 Sum_probs=12.7
Q ss_pred CCceEEEeccCCcchh
Q psy6137 62 PSIDEVNLYEKEEEEK 77 (93)
Q Consensus 62 ~nQsIvi~~sGESg~~ 77 (93)
...-+++|++||||--
T Consensus 4 ~~~klLLLG~geSGKS 19 (340)
T 4fid_A 4 KPITVMLLGSGESGKS 19 (340)
T ss_dssp CCEEEEEEECTTSSHH
T ss_pred CcceEEEECCCCCcHH
Confidence 4566788899999963
No 15
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=59.43 E-value=3.5 Score=30.18 Aligned_cols=16 Identities=13% Similarity=0.040 Sum_probs=12.8
Q ss_pred CCCceEEEeccCCcch
Q psy6137 61 QPSIDEVNLYEKEEEE 76 (93)
Q Consensus 61 ~~nQsIvi~~sGESg~ 76 (93)
+...-+++|++||||-
T Consensus 30 ~~~~klLlLG~geSGK 45 (353)
T 1cip_A 30 AREVKLLLLGAGESGK 45 (353)
T ss_dssp -CEEEEEEECSTTSSH
T ss_pred cccceEEEEcCCCCCc
Confidence 4567889999999995
No 16
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=42.80 E-value=5.8 Score=29.06 Aligned_cols=17 Identities=12% Similarity=-0.165 Sum_probs=12.8
Q ss_pred cCCCceEEEeccCCcch
Q psy6137 60 RQPSIDEVNLYEKEEEE 76 (93)
Q Consensus 60 ~~~nQsIvi~~sGESg~ 76 (93)
...-.-|++|++||||-
T Consensus 6 ~~~~~k~lllG~~~sGK 22 (354)
T 2xtz_A 6 GIHIRKLLLLGAGESGK 22 (354)
T ss_dssp CCEEEEEEEECSTTSSH
T ss_pred CCCceeEEEECCCCCcH
Confidence 34455688889999985
No 17
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=36.23 E-value=18 Score=26.41 Aligned_cols=16 Identities=13% Similarity=-0.006 Sum_probs=13.4
Q ss_pred CCCceEEEeccCCcch
Q psy6137 61 QPSIDEVNLYEKEEEE 76 (93)
Q Consensus 61 ~~nQsIvi~~sGESg~ 76 (93)
+...-|+++++||||-
T Consensus 31 ~~~~killlG~~~SGK 46 (362)
T 1zcb_A 31 ARLVKILLLGAGESGK 46 (362)
T ss_dssp CCCEEEEEECSTTSSH
T ss_pred cCccEEEEECCCCCcH
Confidence 4577889999999995
No 18
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=26.89 E-value=1.1e+02 Score=18.39 Aligned_cols=16 Identities=13% Similarity=0.069 Sum_probs=10.5
Q ss_pred hcCCCceEEEeccCCcch
Q psy6137 59 SRQPSIDEVNLYEKEEEE 76 (93)
Q Consensus 59 ~~~~nQsIvi~~sGESg~ 76 (93)
.......+++ +|++|-
T Consensus 39 ~~~~~~~vll--~G~~G~ 54 (187)
T 2p65_A 39 SRRTKNNPIL--LGDPGV 54 (187)
T ss_dssp TSSSSCEEEE--ESCGGG
T ss_pred hCCCCCceEE--ECCCCC
Confidence 3445566655 999985
No 19
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=21.17 E-value=45 Score=20.14 Aligned_cols=15 Identities=20% Similarity=0.054 Sum_probs=9.7
Q ss_pred cCCCceEEEeccCCcch
Q psy6137 60 RQPSIDEVNLYEKEEEE 76 (93)
Q Consensus 60 ~~~nQsIvi~~sGESg~ 76 (93)
.+....+++ +|++|-
T Consensus 40 ~~~~~~~ll--~G~~G~ 54 (195)
T 1jbk_A 40 RRTKNNPVL--IGEPGV 54 (195)
T ss_dssp SSSSCEEEE--ECCTTS
T ss_pred cCCCCceEE--ECCCCC
Confidence 344566655 899884
Done!