RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6137
(93 letters)
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 88.8 bits (221), Expect = 2e-22
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 10 IGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESR 60
IG V+++ NP+ L IY + I Y G+ ++ PH++A+A +AY M
Sbjct: 41 IGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQS 91
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 88.9 bits (221), Expect = 2e-22
Identities = 35/48 (72%), Positives = 40/48 (83%)
Query: 10 IGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM 57
GIVLVAINPY +LPIYG + I Y G+NMGD+DPHIFAVAEEAY +M
Sbjct: 103 CGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQM 150
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 86.9 bits (216), Expect = 7e-22
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 10 IGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM 57
G+ LVA+NP+ +PIY + ++G+ ++ PHIFA+++ AY M
Sbjct: 119 SGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSM 166
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 86.6 bits (215), Expect = 1e-21
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 10 IGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM 57
G+ V +NPY LP+Y + YRGK + PHIF++++ AY M
Sbjct: 118 SGLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYM 165
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 83.8 bits (208), Expect = 1e-20
Identities = 22/49 (44%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
Query: 10 IGIVLVAINPYTELP-IYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM 57
+ +L+A+NPY ++P IY S TI +Y+GK++G + PH+FA+A++A+ M
Sbjct: 86 VANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDM 134
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 82.8 bits (205), Expect = 2e-20
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 10 IGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM 57
G+ V INPY +LPIY + YRGK ++ PH++AV E AY M
Sbjct: 93 SGLFCVVINPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSM 140
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 81.6 bits (202), Expect = 5e-20
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 10 IGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM 57
G+ LVA+NP+ +PIY + ++G+ ++ PHIFA+++ AY M
Sbjct: 119 SGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSM 166
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 77.8 bits (192), Expect = 1e-18
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 10 IGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM 57
G+ +A+NPY LPIY + I YRGK ++ PH+F+VA+ AY M
Sbjct: 116 SGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNM 163
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 75.9 bits (187), Expect = 6e-18
Identities = 35/52 (67%), Positives = 41/52 (78%)
Query: 10 IGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQ 61
GIVLVAINPY +LPIYG + I Y G+NMGD+DPHIFAVAEEAY +M +
Sbjct: 103 CGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDE 154
Score = 25.1 bits (55), Expect = 4.5
Identities = 7/43 (16%), Positives = 11/43 (25%), Gaps = 2/43 (4%)
Query: 51 EEAYTKMESRQPSIDEVNLYEKEEEEKEKKEEEKEEKRKKKEE 93
E +E E + E EEE + +
Sbjct: 948 LEKMNNLEIT--YSTETEKLRSDVERLRMSEEEAKNATNRVLS 988
Score = 24.3 bits (53), Expect = 8.7
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 51 EEAYTKMESRQPSIDEVNLYEKEEEEKEKKEEEKEEKRK 89
EE ++ + I E + EE K+ + + +E+ +
Sbjct: 1040 EELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLR 1078
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 63.3 bits (154), Expect = 1e-13
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 10 IGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKM 57
G+ V INPY +LPIY I Y+GK ++ PHI+A+A+ AY M
Sbjct: 116 SGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSM 163
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 0.068
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 69 LYEKEEEEKEKKEEEKEEKRKKKEE 93
L E + K ++E +E+ +K EE
Sbjct: 98 LQELDAASKVMEQEWREKAKKDLEE 122
Score = 25.1 bits (54), Expect = 3.8
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 71 EKEEEEKEKKEEEKEEKRKKKEE 93
K EE+ K+ +E + K E+
Sbjct: 88 RKWREEQRKRLQELDAASKVMEQ 110
Score = 24.3 bits (52), Expect = 7.2
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 72 KEEEEKEKKEEEKEEKRKKKE 92
+EE+ K +E + K ++E
Sbjct: 91 REEQRKRLQELDAASKVMEQE 111
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase,
isoform A, structural genomics, structural genomics
consortium, SGC transferase; 1.85A {Homo sapiens} PDB:
2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A*
3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A
Length = 312
Score = 28.4 bits (64), Expect = 0.25
Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 17/71 (23%)
Query: 27 GSNTIWTYRGKNM----GDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKKEE 82
GS TI Y D + + + +E R E+ + +
Sbjct: 120 GSRTILYYDRSLPDVSATDFEKVDLTQFKWIH--IEGRNA-----------SEQVKMLQR 166
Query: 83 EKEEKRKKKEE 93
++ E
Sbjct: 167 IDAHNTRQPPE 177
>3qnq_A PTS system, cellobiose-specific IIC component; membrane protein,
transporter, enzyme IIC, phosphoenolpyruva
phosphotransferase system; HET: CBS ZDM MAL CIT; 3.29A
{Bacillus cereus}
Length = 442
Score = 26.1 bits (58), Expect = 1.7
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 67 VNLYEKEEEEKEKKEEEKEE 86
+ +++K++ +EK E E
Sbjct: 419 LKIWDKQKIAEEKGEAAAEN 438
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 26.4 bits (58), Expect = 1.7
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 72 KEEEEKEKKEEEKEEKRKKKEE 93
K+E E +K++E+EE+R + E
Sbjct: 392 KQENENMRKKKEEEERRARMEA 413
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 26.3 bits (58), Expect = 1.8
Identities = 3/27 (11%), Positives = 7/27 (25%), Gaps = 5/27 (18%)
Query: 40 GDLDPHI-----FAVAEEAYTKMESRQ 61
G + P + +A +
Sbjct: 386 GRIHPTLSKVYSLEDTGQAAYDVHRNL 412
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 26.0 bits (58), Expect = 1.9
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 5/27 (18%)
Query: 40 GDLDPHIFAV-----AEEAYTKMESRQ 61
G L P + V A E + +E R+
Sbjct: 307 GKLKPVVGQVLPLEAAAEGHRLLEERR 333
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat
shock proteins, protein-RNA interactions, ribosome,
structural genomics; 2.00A {Escherichia coli} SCOP:
d.66.1.3 PDB: 3bbu_A
Length = 133
Score = 25.6 bits (56), Expect = 2.4
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 58 ESRQPSIDEVNLYEKEEEEKEKKEEEKEEKRKKKE 92
E R+P+ + LYE+ E EK+E+ ++
Sbjct: 73 EQRRPASEAALLYEETAESVEKREKMALARKLNAL 107
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 25.4 bits (55), Expect = 2.9
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 52 EAYTKMESRQPSIDEVNLYEKEEEEKEKKEEEKEEKRKKKEE 93
Y+ ++ + + KE ++ K E + E
Sbjct: 217 GLYSLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAE 258
>3t2c_A Fructose-1,6-bisphosphate aldolase/phosphatase; (beta/alpha)8 TIM
barrel, FBP, F6P, DHAP, GAP, phosphorylati lyase,
hydrolase; HET: 13P; 1.30A {Thermoproteus neutrophilus}
PDB: 3t2b_A* 3t2d_A* 3t2e_A* 3t2f_A 3t2g_A*
Length = 407
Score = 25.3 bits (55), Expect = 3.2
Identities = 10/55 (18%), Positives = 21/55 (38%)
Query: 39 MGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKKEEEKEEKRKKKEE 93
MG PH E YT + + + E++ K+ E + + ++ +
Sbjct: 343 MGPFQPHRLPPEEMEYTALPKILAKVKPYPADQYEKDRKKYIEAVVKGAKVEESQ 397
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 25.1 bits (55), Expect = 4.5
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 66 EVNLYEKEEEEKEKKEEEKEEKRKKKEE 93
E + EE+ + + KE+ K++ E
Sbjct: 311 ENQKRRETEEKMRRAKLAKEKAEKERLE 338
Score = 23.9 bits (52), Expect = 9.4
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 67 VNLYEKEEEEKEKKEEEKEEKRKKKEE 93
N++ + +E +K+ E +E+ R+ K
Sbjct: 302 RNMFLQAVKENQKRRETEEKMRRAKLA 328
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP,
deubiquitinating enzyme, substrate recognition; 3.20A
{Homo sapiens}
Length = 522
Score = 24.9 bits (54), Expect = 4.6
Identities = 6/39 (15%), Positives = 24/39 (61%)
Query: 55 TKMESRQPSIDEVNLYEKEEEEKEKKEEEKEEKRKKKEE 93
+K+ ++ + ++ ++ E ++++ + +KRK+++E
Sbjct: 484 SKLSEVLQAVTDHDIPQQLVERLQEEKRIEAQKRKERQE 522
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.0 bits (54), Expect = 5.4
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 7/37 (18%)
Query: 30 TIWTYRGKNMGDLD------PHIFAVAEEAYTKMESR 60
T +T+R + G L P + + + A+ ++S+
Sbjct: 1715 TSYTFRSEK-GLLSATQFTQPALTLMEKAAFEDLKSK 1750
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 24.5 bits (53), Expect = 6.5
Identities = 5/21 (23%), Positives = 15/21 (71%)
Query: 73 EEEEKEKKEEEKEEKRKKKEE 93
+ ++++KK+ +EK++ + E
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLE 122
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 24.6 bits (53), Expect = 6.6
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 73 EEEEKEKKEEEKEEKRKKKEE 93
+ ++K KEEK+ KE+
Sbjct: 112 LVQREKKLSRTKEEKKAIKEK 132
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 152
Score = 23.8 bits (51), Expect = 8.9
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 70 YEKEEEEKEKKEEEKEEKRK 89
Y + E++K+++ ++ E K
Sbjct: 85 YWEFEKDKDREHDKLVELCK 104
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 23.7 bits (51), Expect = 9.8
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 66 EVNLYEKEEEEKEKKEEEKEEKRKKKEE 93
E+ L EKE+ + +EE ++K+ +++
Sbjct: 147 EMILTEKEQIVPKPEEEVAQKKKISQKK 174
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.303 0.127 0.341
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,421,913
Number of extensions: 77984
Number of successful extensions: 772
Number of sequences better than 10.0: 1
Number of HSP's gapped: 610
Number of HSP's successfully gapped: 246
Length of query: 93
Length of database: 6,701,793
Length adjustment: 60
Effective length of query: 33
Effective length of database: 5,026,533
Effective search space: 165875589
Effective search space used: 165875589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 51 (24.2 bits)