RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6137
(93 letters)
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 79.4 bits (195), Expect = 1e-19
Identities = 35/52 (67%), Positives = 41/52 (78%)
Query: 10 IGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQ 61
GIVLVAINPY +LPIYG + I Y G+NMGD+DPHIFAVAEEAY +M +
Sbjct: 41 CGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDE 92
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 78.6 bits (193), Expect = 2e-19
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 10 IGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQ 61
IG V+++ NP+ L IY + I Y G+ ++ PH++A+A +AY M Q
Sbjct: 33 IGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQ 84
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 77.9 bits (191), Expect = 5e-19
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 10 IGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQ 61
G+ V INPY +LPIY I Y+GK ++ PHI+A+A+ AY M +
Sbjct: 38 SGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDR 89
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 77.5 bits (190), Expect = 6e-19
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 10 IGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQ 61
G+ V +NPY LP+Y + YRGK + PHIF++++ AY M + +
Sbjct: 70 SGLFCVTVNPYKWLPVYNPKVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDR 121
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 75.9 bits (186), Expect = 2e-18
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 10 IGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQ 61
G+ +A+NPY LPIY + I YRGK ++ PH+F+VA+ AY M + +
Sbjct: 68 SGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDR 119
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 75.5 bits (185), Expect = 3e-18
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 10 IGIVLVAINPYTELPIYGSNTIWTYRGKNMGDLDPHIFAVAEEAYTKMESRQ 61
G+ LVA+NP+ +PIY + ++G+ ++ PHIFA+++ AY M +
Sbjct: 72 SGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDR 123
>d1dm9a_ d.66.1.3 (A:) Heat shock protein 15 kD {Escherichia coli
[TaxId: 562]}
Length = 104
Score = 24.9 bits (54), Expect = 1.2
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 60 RQPSIDEVNLYEKEEEEKEKKEEEKEEKR 88
R+P+ + LYE+ E EK+E+ ++
Sbjct: 71 RRPASEAALLYEETAESVEKREKMALARK 99
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 23.9 bits (52), Expect = 3.3
Identities = 5/23 (21%), Positives = 16/23 (69%)
Query: 71 EKEEEEKEKKEEEKEEKRKKKEE 93
+K++ ++K++ + E+ K +E+
Sbjct: 107 QKKQLTSQEKKQIRLEREKFEED 129
Score = 23.1 bits (50), Expect = 6.4
Identities = 7/31 (22%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 64 IDEVNLYEKEEEEKEKKEE-EKEEKRKKKEE 93
D +++ + +KE+K++ +EK++ + E
Sbjct: 92 CDFTKMFDYFQLQKEQKKQLTSQEKKQIRLE 122
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 23.5 bits (51), Expect = 4.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 73 EEEEKEKKEEEKEEKRKKKEE 93
+ + + +K+ KEEK K KEE
Sbjct: 110 KAQTEARKQMSKEEKLKIKEE 130
Score = 23.1 bits (50), Expect = 6.2
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 71 EKEEEEKEKKEEEKEEKRKKKEE 93
+++ KE+K + KEE K +E
Sbjct: 115 ARKQMSKEEKLKIKEENEKLLKE 137
>d1zhxa1 d.338.1.1 (A:2-434) Oxysterol-binding protein homolog 4,
KES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 433
Score = 23.5 bits (50), Expect = 5.2
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 70 YEKEEEEKEKKEEEKEEKRKKKEE 93
+ + K + EE + E RK++E
Sbjct: 328 FNLIAKTKTELEETQRELRKEEEA 351
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 23.1 bits (49), Expect = 6.4
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 48 AVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKKEEEKE 85
A K R EV K+ EE+E K E ++
Sbjct: 213 ATLTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAEREK 250
>d1h0ha2 c.81.1.1 (A:1-812) Tungsten containing formate
dehydrogenase, large subunit {Desulfovibrio gigas
[TaxId: 879]}
Length = 812
Score = 23.3 bits (49), Expect = 7.8
Identities = 6/22 (27%), Positives = 9/22 (40%), Gaps = 2/22 (9%)
Query: 32 WTYRGKNMGDLDPHIFAVAEEA 53
Y + G DPH +A+
Sbjct: 636 TDYWVNDHGHFDPH--KIAKLI 655
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate
carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 363
Score = 22.9 bits (49), Expect = 8.6
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 36 GKNMGDLDPHIFAVAEEAYTKMESRQPSIDEVNLYEKEEEEKEKKEEEKEEKR 88
G N G H ++A ++ P I VN + K++E K E R
Sbjct: 228 GYNFGKYLAHWLSMA----QHPAAKLPKIFHVNWFRKDKEGKFLWPGFGENSR 276
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.303 0.127 0.341
Gapped
Lambda K H
0.267 0.0634 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 351,522
Number of extensions: 15528
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 72
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 47 (22.1 bits)