BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6139
         (69 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp
          Abasic Site Containing Dna-Duplex
          Length = 117

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 18/29 (62%), Positives = 23/29 (79%)

Query: 2  FTLKKWNAVAMWSWDVECDTCAICRVQVM 30
          F +KKWNAVA+W+WD+  D CAICR  +M
Sbjct: 31 FEVKKWNAVALWAWDIVVDNCAICRNHIM 59


>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
          Ligases: Conformational Control Of Conjugation.
 pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
          Protein Transfer: Structural Insights Into Cullin-Ring
          Ligases
 pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
          Protein Transfer: Structural Insights Into Cullin-Ring
          Ligases
 pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
          Protein Transfer: Structural Insights Into Cullin-Ring
          Ligases
 pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
          Protein Transfer: Structural Insights Into Cullin-Ring
          Ligases
 pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
 pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
          Length = 106

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 18/29 (62%), Positives = 23/29 (79%)

Query: 2  FTLKKWNAVAMWSWDVECDTCAICRVQVM 30
          F +KKWNAVA+W+WD+  D CAICR  +M
Sbjct: 20 FEVKKWNAVALWAWDIVVDNCAICRNHIM 48


>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
 pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
          Length = 108

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 18/29 (62%), Positives = 23/29 (79%)

Query: 2  FTLKKWNAVAMWSWDVECDTCAICRVQVM 30
          F +KKWNAVA+W+WD+  D CAICR  +M
Sbjct: 22 FEVKKWNAVALWAWDIVVDNCAICRNHIM 50


>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
 pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
 pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp
          Abasic Site Containing Dna-Duplex
 pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp
          Abasic Site Containing Dna-Duplex
          Length = 98

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 18/29 (62%), Positives = 23/29 (79%)

Query: 2  FTLKKWNAVAMWSWDVECDTCAICRVQVM 30
          F +KKWNAVA+W+WD+  D CAICR  +M
Sbjct: 12 FEVKKWNAVALWAWDIVVDNCAICRNHIM 40


>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
          Ring-Box Protein 2
          Length = 81

 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/31 (70%), Positives = 25/31 (80%), Gaps = 1/31 (3%)

Query: 12 MWSWDVECDTCAICRVQVMGTATVYPEPEDK 42
          MWSWDVECDTCAICRVQVM  A +  + E+K
Sbjct: 8  MWSWDVECDTCAICRVQVM-DACLRCQAENK 37


>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme
 pdb|2AW5|B Chain B, Crystal Structure Of A Human Malic Enzyme
 pdb|2AW5|C Chain C, Crystal Structure Of A Human Malic Enzyme
          Length = 575

 Score = 46.6 bits (109), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)

Query: 32  TATVYPEPEDKLAFVKSFVYDYSYSEPSVPTSYSWPK 68
           TATVYPEP++K AFV+S +Y   Y +  +P  YSWP+
Sbjct: 537 TATVYPEPQNKEAFVRSQMYSTDYDQ-ILPDCYSWPE 572


>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
          Ligase Complex
 pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
          Ligase Complex
          Length = 90

 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 18/29 (62%), Positives = 23/29 (79%)

Query: 2  FTLKKWNAVAMWSWDVECDTCAICRVQVM 30
          F +KKWNAVA+W+WD+  D CAICR  +M
Sbjct: 4  FEVKKWNAVALWAWDIVVDNCAICRNHIM 32


>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
          Ligases: Conformational Control Of Conjugation
 pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
          Ligases: Conformational Control Of Conjugation
          Length = 106

 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 17/28 (60%), Positives = 22/28 (78%)

Query: 2  FTLKKWNAVAMWSWDVECDTCAICRVQV 29
          F +KKWNAVA+W+WD+  D CAICR  +
Sbjct: 20 FEVKKWNAVALWAWDIVVDNCAICRNHI 47


>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|B Chain B, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|C Chain C, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|D Chain D, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|E Chain E, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|F Chain F, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|G Chain G, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|H Chain H, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|I Chain I, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|J Chain J, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|K Chain K, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|L Chain L, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|M Chain M, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|N Chain N, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|O Chain O, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|P Chain P, Malic Enzyme From Pigeon Liver
          Length = 555

 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 32  TATVYPEPEDKLAFVKSFVYDYSYSEPSVPTSYSWPK 68
           TA+ YP+PED  AF++S VY   Y+   V  SY+WP+
Sbjct: 514 TASTYPQPEDLEAFIRSQVYSTDYN-CFVADSYTWPE 549


>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
           Complexed With Nicotinamide Adenine Dinucleotide
 pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
           Complexed With Nicotinamide Adenine Dinucleotide
 pdb|1O0S|A Chain A, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
           With Nadh
 pdb|1O0S|B Chain B, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
           With Nadh
          Length = 605

 Score = 40.0 bits (92), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 31  GTATVYPEPEDKLAFVKSFVYDYSYSEPSVPTSYSWPK 68
           GTA +YP+PED   +V++ VY+  Y E  +  +Y WP+
Sbjct: 550 GTANLYPQPEDLEKYVRAQVYNTEYEE-LINATYDWPE 586


>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human
           Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
           Fumarate
 pdb|1GZ3|B Chain B, Molecular Mechanism For The Regulation Of Human
           Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
           Fumarate
 pdb|1GZ3|C Chain C, Molecular Mechanism For The Regulation Of Human
           Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
           Fumarate
 pdb|1GZ3|D Chain D, Molecular Mechanism For The Regulation Of Human
           Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
           Fumarate
          Length = 554

 Score = 36.2 bits (82), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 33  ATVYPEPEDKLAFVKSFVYDYSYSEPSVPTSYSWP 67
           A VYPEPEDK  +VK   +   Y +  +P  Y WP
Sbjct: 521 AFVYPEPEDKAKYVKEQTWRSEY-DSLLPDVYEWP 554


>pdb|2LGV|A Chain A, Rbx1
          Length = 100

 Score = 34.7 bits (78), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 19/29 (65%)

Query: 2  FTLKKWNAVAMWSWDVECDTCAICRVQVM 30
          F +KK NA A  +WD+  D CAICR  +M
Sbjct: 14 FEVKKSNASAQSAWDIVVDNCAICRNHIM 42


>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
 pdb|1QR6|B Chain B, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
          Length = 584

 Score = 34.3 bits (77), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 36  YPEPEDKLAFVKSFVYDYSYSEPSVPTSYSWPK 68
           YPEPEDK  +VK   +   Y +  +P  Y WP+
Sbjct: 543 YPEPEDKAKYVKERTWRSEY-DSLLPDVYEWPE 574


>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With
           Ketomalonate
 pdb|1EFK|B Chain B, Structure Of Human Malic Enzyme In Complex With
           Ketomalonate
 pdb|1EFK|C Chain C, Structure Of Human Malic Enzyme In Complex With
           Ketomalonate
 pdb|1EFK|D Chain D, Structure Of Human Malic Enzyme In Complex With
           Ketomalonate
 pdb|1EFL|A Chain A, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
           And Tartronate
 pdb|1EFL|B Chain B, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
           And Tartronate
 pdb|1EFL|C Chain C, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
           And Tartronate
 pdb|1EFL|D Chain D, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
           And Tartronate
 pdb|1PJL|A Chain A, Crystal Structure Of Human M-Nad-Me In Ternary Complex
           With Nad And Lu3+
 pdb|1PJL|B Chain B, Crystal Structure Of Human M-Nad-Me In Ternary Complex
           With Nad And Lu3+
 pdb|1PJL|C Chain C, Crystal Structure Of Human M-Nad-Me In Ternary Complex
           With Nad And Lu3+
 pdb|1PJL|D Chain D, Crystal Structure Of Human M-Nad-Me In Ternary Complex
           With Nad And Lu3+
 pdb|1PJL|E Chain E, Crystal Structure Of Human M-Nad-Me In Ternary Complex
           With Nad And Lu3+
 pdb|1PJL|F Chain F, Crystal Structure Of Human M-Nad-Me In Ternary Complex
           With Nad And Lu3+
 pdb|1PJL|G Chain G, Crystal Structure Of Human M-Nad-Me In Ternary Complex
           With Nad And Lu3+
 pdb|1PJL|H Chain H, Crystal Structure Of Human M-Nad-Me In Ternary Complex
           With Nad And Lu3+
          Length = 584

 Score = 34.3 bits (77), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 36  YPEPEDKLAFVKSFVYDYSYSEPSVPTSYSWPK 68
           YPEPEDK  +VK   +   Y +  +P  Y WP+
Sbjct: 543 YPEPEDKAKYVKERTWRSEY-DSLLPDVYEWPE 574


>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial
           Nad(P)+-Dependent Malic Enzyme
 pdb|1DO8|B Chain B, Crystal Structure Of A Closed Form Of Human Mitochondrial
           Nad(P)+-Dependent Malic Enzyme
 pdb|1DO8|C Chain C, Crystal Structure Of A Closed Form Of Human Mitochondrial
           Nad(P)+-Dependent Malic Enzyme
 pdb|1DO8|D Chain D, Crystal Structure Of A Closed Form Of Human Mitochondrial
           Nad(P)+-Dependent Malic Enzyme
 pdb|1PJ4|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
           Malic Enzyme In A Pentary Complex With Natural Substrate
           Malate, Atp, Mn++, And Allosteric Activator Fumarate.
 pdb|1PJ4|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
           Malic Enzyme In A Pentary Complex With Natural Substrate
           Malate, Atp, Mn++, And Allosteric Activator Fumarate.
 pdb|1PJ4|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
           Malic Enzyme In A Pentary Complex With Natural Substrate
           Malate, Atp, Mn++, And Allosteric Activator Fumarate.
 pdb|1PJ4|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
           Malic Enzyme In A Pentary Complex With Natural Substrate
           Malate, Atp, Mn++, And Allosteric Activator Fumarate.
 pdb|1PJ2|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
           Malic Enzyme In A Pentary Complex With Natural Substrate
           Malate, Cofactor Nadh, Mn++, And Allosteric Activator
           Fumarate
 pdb|1PJ2|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
           Malic Enzyme In A Pentary Complex With Natural Substrate
           Malate, Cofactor Nadh, Mn++, And Allosteric Activator
           Fumarate
 pdb|1PJ2|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
           Malic Enzyme In A Pentary Complex With Natural Substrate
           Malate, Cofactor Nadh, Mn++, And Allosteric Activator
           Fumarate
 pdb|1PJ2|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
           Malic Enzyme In A Pentary Complex With Natural Substrate
           Malate, Cofactor Nadh, Mn++, And Allosteric Activator
           Fumarate
 pdb|1PJ3|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
           Malic Enzyme In A Pentary Complex With Natural Substrate
           Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
           Fumarate.
 pdb|1PJ3|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
           Malic Enzyme In A Pentary Complex With Natural Substrate
           Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
           Fumarate.
 pdb|1PJ3|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
           Malic Enzyme In A Pentary Complex With Natural Substrate
           Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
           Fumarate.
 pdb|1PJ3|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
           Malic Enzyme In A Pentary Complex With Natural Substrate
           Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
           Fumarate
          Length = 564

 Score = 34.3 bits (77), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 36  YPEPEDKLAFVKSFVYDYSYSEPSVPTSYSWPK 68
           YPEPEDK  +VK   +   Y +  +P  Y WP+
Sbjct: 523 YPEPEDKAKYVKERTWRSEY-DSLLPDVYEWPE 554


>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human
           Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
           Fumarate
 pdb|1GZ4|B Chain B, Molecular Mechanism Of The Regulation Of Human
           Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
           Fumarate
 pdb|1GZ4|C Chain C, Molecular Mechanism Of The Regulation Of Human
           Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
           Fumarate
 pdb|1GZ4|D Chain D, Molecular Mechanism Of The Regulation Of Human
           Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
           Fumarate
          Length = 551

 Score = 33.9 bits (76), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 36  YPEPEDKLAFVKSFVYDYSYSEPSVPTSYSWP 67
           YPEPEDK  +VK   +   Y +  +P  Y WP
Sbjct: 521 YPEPEDKAKYVKERTWRSEY-DSLLPDVYEWP 551


>pdb|1X63|A Chain A, Solution Structure Of The Second Lim Domain Of Skeletal
          Muscle Lim Protein 1
          Length = 82

 Score = 30.0 bits (66), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)

Query: 15 WDVECDTCAICRVQVMGTATVYPEPED 41
          W  +C TC+ C+ QV+GT + +P+ ED
Sbjct: 39 WHKDCFTCSNCK-QVIGTGSFFPKGED 64


>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed
          With Mg-Amppnp
 pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed
          With Mg-Amppnp
 pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed
          With Adp-mg-alfx
 pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed
          With Adp-Mg-Vo4
 pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
          Release
 pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
          Release: Mg-Releasing Transition-1
 pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
          Release: Mg-Releasing Transition-2
 pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
          Release: Mg-Releasing Transition-3
 pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
          Release
          Length = 366

 Score = 30.0 bits (66), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 25 CRVQVMGTATVYPEPEDKLAFVKSFVYDYSYSEPSVPTSYSW 66
          C +Q+ G+ T    P+      KSF +DYSY   + P   ++
Sbjct: 26 CIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINY 67


>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed
          With Mg-Amppcp
          Length = 366

 Score = 30.0 bits (66), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 25 CRVQVMGTATVYPEPEDKLAFVKSFVYDYSYSEPSVPTSYSW 66
          C +Q+ G+ T    P+      KSF +DYSY   + P   ++
Sbjct: 26 CIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINY 67


>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed
          With Mg-Adp
          Length = 367

 Score = 29.6 bits (65), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 25 CRVQVMGTATVYPEPEDKLAFVKSFVYDYSYSEPSVPTSYSW 66
          C +Q+ G+ T    P+      KSF +DYSY   + P   ++
Sbjct: 26 CIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINY 67


>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
 pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
 pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
          Length = 394

 Score = 29.6 bits (65), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 25 CRVQVMGTATVYPEPEDKLAFVKSFVYDYSYSEPSVPTSYSW 66
          C +Q+ G+ T    P+      KSF +DYSY   + P   ++
Sbjct: 42 CIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINY 83


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.131    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,378,678
Number of Sequences: 62578
Number of extensions: 74344
Number of successful extensions: 154
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 21
length of query: 69
length of database: 14,973,337
effective HSP length: 39
effective length of query: 30
effective length of database: 12,532,795
effective search space: 375983850
effective search space used: 375983850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)