Query psy6139
Match_columns 69
No_of_seqs 104 out of 327
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 18:35:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6139.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6139hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a0k_B E3 ubiquitin-protein li 99.5 2.7E-14 9.2E-19 90.4 3.6 55 1-56 30-89 (117)
2 3dpl_R Ring-box protein 1; ubi 99.4 4.7E-14 1.6E-18 87.5 2.3 47 1-47 19-70 (106)
3 2ecl_A Ring-box protein 2; RNF 98.7 1.3E-09 4.4E-14 63.6 -1.2 34 6-39 2-35 (81)
4 1gq2_A Malic enzyme; oxidoredu 97.2 0.00029 9.9E-09 54.1 4.0 39 30-69 512-550 (555)
5 1pj3_A NAD-dependent malic enz 97.1 0.00042 1.4E-08 53.3 3.9 39 30-69 517-555 (564)
6 1o0s_A NAD-ME, NAD-dependent m 97.1 0.00037 1.3E-08 54.0 3.6 38 30-68 549-586 (605)
7 2ct0_A Non-SMC element 1 homol 86.1 0.16 5.4E-06 29.2 0.2 13 18-30 14-26 (74)
8 1v87_A Deltex protein 2; ring- 77.1 1.3 4.4E-05 25.8 1.9 17 18-34 24-40 (114)
9 2ecm_A Ring finger and CHY zin 61.2 2.4 8.1E-05 21.2 0.5 15 17-31 3-17 (55)
10 1iym_A EL5; ring-H2 finger, ub 57.9 2.8 9.7E-05 21.0 0.5 14 18-31 4-17 (55)
11 1x4j_A Ring finger protein 38; 55.8 3.5 0.00012 22.1 0.7 14 18-31 22-35 (75)
12 1wvk_A AT2G23090/F21P24.15; st 54.4 3.2 0.00011 24.6 0.4 14 20-33 46-59 (86)
13 2ep4_A Ring finger protein 24; 53.7 3.8 0.00013 21.8 0.6 14 18-31 14-27 (74)
14 2xeu_A Ring finger protein 4; 52.6 4 0.00014 20.8 0.5 14 18-31 2-15 (64)
15 3ng2_A RNF4, snurf, ring finge 50.9 4.4 0.00015 21.2 0.5 14 18-31 9-22 (71)
16 2kiz_A E3 ubiquitin-protein li 49.8 4.8 0.00016 21.1 0.6 14 18-31 13-26 (69)
17 2ea6_A Ring finger protein 4; 48.6 4.7 0.00016 20.8 0.4 15 18-32 14-28 (69)
18 1e7l_A GP49, recombination end 46.1 5.6 0.00019 26.0 0.6 14 18-31 19-32 (157)
19 1chc_A Equine herpes virus-1 r 45.5 5.7 0.0002 20.7 0.5 14 18-31 4-17 (68)
20 2ecj_A Tripartite motif-contai 45.3 6.6 0.00023 19.6 0.7 15 18-32 14-28 (58)
21 2ysj_A Tripartite motif-contai 44.2 6.9 0.00024 20.1 0.7 15 18-32 19-33 (63)
22 2d8s_A Cellular modulator of i 43.8 6.4 0.00022 22.2 0.5 14 17-30 13-26 (80)
23 2l0b_A E3 ubiquitin-protein li 43.4 6.9 0.00024 22.0 0.6 14 18-31 39-52 (91)
24 2d8t_A Dactylidin, ring finger 42.7 7.3 0.00025 20.6 0.6 14 18-31 14-27 (71)
25 3oj6_A Blasticidin-S deaminase 41.2 4.4 0.00015 26.2 -0.5 14 20-33 110-123 (158)
26 3dmo_A Cytidine deaminase; str 38.3 3.7 0.00013 26.0 -1.2 15 19-33 93-107 (138)
27 2d30_A Cytidine deaminase; pur 38.2 5.3 0.00018 25.2 -0.5 16 19-34 92-107 (141)
28 2egp_A Tripartite motif-contai 37.1 10 0.00036 20.1 0.7 14 18-31 11-24 (79)
29 3mpz_A Cytidine deaminase; ssg 37.0 4.2 0.00014 26.1 -1.1 15 20-34 106-120 (150)
30 2ysl_A Tripartite motif-contai 36.1 10 0.00036 19.8 0.6 14 18-31 19-32 (73)
31 2ecw_A Tripartite motif-contai 34.5 11 0.00038 20.0 0.5 14 18-31 18-31 (85)
32 2ecn_A Ring finger protein 141 34.5 15 0.0005 19.2 1.0 14 18-31 14-27 (70)
33 3r2n_A Cytidine deaminase; str 33.8 5.1 0.00017 25.3 -1.1 16 19-34 90-105 (138)
34 2puy_A PHD finger protein 21A; 33.4 13 0.00043 19.6 0.6 13 16-28 2-14 (60)
35 1r5t_A Cytidine deaminase; zin 32.4 9.3 0.00032 23.9 -0.0 15 20-34 94-108 (142)
36 2ecv_A Tripartite motif-contai 32.1 13 0.00045 19.7 0.6 14 18-31 18-31 (85)
37 3vdp_A Recombination protein R 31.9 4.4 0.00015 27.6 -1.7 39 18-56 79-119 (212)
38 2ct2_A Tripartite motif protei 31.9 13 0.00046 20.0 0.6 14 18-31 14-27 (88)
39 1g25_A CDK-activating kinase a 31.3 17 0.00057 18.7 0.9 15 18-32 2-17 (65)
40 2djb_A Polycomb group ring fin 31.2 9.9 0.00034 20.1 -0.0 14 18-31 14-27 (72)
41 3b8f_A Putative blasticidin S 31.0 11 0.00037 23.5 0.1 14 21-34 88-101 (142)
42 2yur_A Retinoblastoma-binding 31.0 11 0.00038 20.1 0.1 14 18-31 14-27 (74)
43 2z3g_A Blasticidin-S deaminase 30.9 8 0.00027 23.8 -0.5 14 20-33 86-99 (130)
44 1bor_A Transcription factor PM 30.5 15 0.00051 18.7 0.6 14 18-31 5-18 (56)
45 2ysm_A Myeloid/lymphoid or mix 30.3 22 0.00074 20.7 1.4 22 17-38 5-30 (111)
46 1wii_A Hypothetical UPF0222 pr 29.7 18 0.00062 21.1 0.9 25 18-42 46-70 (85)
47 2fr5_A Cytidine deaminase; tet 28.0 11 0.00039 23.7 -0.2 15 19-33 96-110 (146)
48 4eg2_A Cytidine deaminase; UMP 28.0 13 0.00043 26.4 0.0 16 19-34 129-144 (298)
49 2ect_A Ring finger protein 126 27.8 22 0.00075 18.8 1.0 13 18-30 14-26 (78)
50 2ecy_A TNF receptor-associated 26.8 15 0.00053 18.9 0.2 15 18-32 14-28 (66)
51 2dvm_A Malic enzyme, 439AA lon 26.7 8.8 0.0003 28.3 -1.0 26 30-55 395-420 (439)
52 3rsn_A SET1/ASH2 histone methy 26.4 13 0.00044 24.6 -0.1 25 14-38 15-39 (177)
53 1k3s_A SIGE; type III, secreti 25.5 4.8 0.00016 25.0 -2.2 27 28-56 39-65 (113)
54 1vdd_A Recombination protein R 25.1 6.9 0.00024 27.0 -1.7 39 18-56 65-105 (228)
55 2dkt_A Ring finger and CHY zin 24.2 16 0.00054 23.4 -0.1 9 20-28 102-110 (143)
56 4ap4_A E3 ubiquitin ligase RNF 23.9 22 0.00075 20.3 0.6 14 18-31 6-19 (133)
57 1t1h_A Gspef-atpub14, armadill 23.6 22 0.00074 18.8 0.5 13 19-31 8-20 (78)
58 2csy_A Zinc finger protein 183 23.1 24 0.00082 18.9 0.6 13 19-31 15-27 (81)
59 3ztg_A E3 ubiquitin-protein li 22.9 26 0.00087 19.2 0.7 14 18-31 12-25 (92)
60 2l9z_A PR domain zinc finger p 22.9 25 0.00086 17.9 0.6 16 21-36 13-28 (39)
61 2vpb_A Hpygo1, pygopus homolog 22.6 22 0.00074 19.4 0.3 13 18-30 7-19 (65)
62 2vje_B MDM4 protein; proto-onc 22.6 19 0.00066 18.8 0.1 9 21-29 46-54 (63)
63 2ckl_A Polycomb group ring fin 21.3 22 0.00076 20.2 0.2 14 18-31 14-27 (108)
No 1
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.46 E-value=2.7e-14 Score=90.45 Aligned_cols=55 Identities=33% Similarity=0.755 Sum_probs=18.5
Q ss_pred CEEEEEEEeEEEeEeecCCCeeccccchhhccCCCCCCC-----CchhhHHhhhcccccCC
Q psy6139 1 MFTLKKWNAVAMWSWDVECDTCAICRVQVMGTATVYPEP-----EDKLAFVKSFVYDYSYS 56 (69)
Q Consensus 1 ~~~i~~~~~v~~W~W~~~~d~CaICr~~~~g~a~~~p~P-----~D~~~~V~~~~Y~~~Y~ 56 (69)
||+||+|++|+.|+||+.+|+|+||++.|++.|+.|..+ ++.+..+... ..+.|+
T Consensus 30 r~~ikkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH 89 (117)
T 4a0k_B 30 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFH 89 (117)
T ss_dssp SEEEEEEEEEEEEEECCCC------------------------------------------
T ss_pred ceEEEEEEEEEEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEc
Confidence 699999999999999999999999999999999999874 7777665443 455554
No 2
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.42 E-value=4.7e-14 Score=87.53 Aligned_cols=47 Identities=38% Similarity=0.848 Sum_probs=39.4
Q ss_pred CEEEEEEEeEEEeEeecCCCeeccccchhhccCCCCC-----CCCchhhHHh
Q psy6139 1 MFTLKKWNAVAMWSWDVECDTCAICRVQVMGTATVYP-----EPEDKLAFVK 47 (69)
Q Consensus 1 ~~~i~~~~~v~~W~W~~~~d~CaICr~~~~g~a~~~p-----~P~D~~~~V~ 47 (69)
||+||+|++|+.|+|++.+|+|+||++.|++.|+.|. .|++.+..+.
T Consensus 19 r~~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~ 70 (106)
T 3dpl_R 19 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW 70 (106)
T ss_dssp SEEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEE
T ss_pred ceeEEEEEEeeEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEee
Confidence 7999999999999999999999999999999999887 4666665443
No 3
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=1.3e-09 Score=63.61 Aligned_cols=34 Identities=56% Similarity=1.055 Sum_probs=31.4
Q ss_pred EEEeEEEeEeecCCCeeccccchhhccCCCCCCC
Q psy6139 6 KWNAVAMWSWDVECDTCAICRVQVMGTATVYPEP 39 (69)
Q Consensus 6 ~~~~v~~W~W~~~~d~CaICr~~~~g~a~~~p~P 39 (69)
++++|+.|+|+++++.|+||++.|++.|+.|.++
T Consensus 2 ~~~~~~~w~~~~~~~~C~IC~~~~~~~C~iC~~~ 35 (81)
T 2ecl_A 2 SSGSSGMWSWDVECDTCAICRVQVMDACLRCQAE 35 (81)
T ss_dssp CCCCCCCCCCSCCCSCBTTTTBCTTSCCTTHHHH
T ss_pred CcceeEEeeecCCCCCCcccChhhhccCcccccc
Confidence 5799999999999999999999999999988664
No 4
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A
Probab=97.19 E-value=0.00029 Score=54.12 Aligned_cols=39 Identities=46% Similarity=0.820 Sum_probs=35.5
Q ss_pred hccCCCCCCCCchhhHHhhhcccccCCCCCCCccccCCCC
Q psy6139 30 MGTATVYPEPEDKLAFVKSFVYDYSYSEPSVPTSYSWPKL 69 (69)
Q Consensus 30 ~g~a~~~p~P~D~~~~V~~~~Y~~~Y~~s~lp~~y~wp~~ 69 (69)
+|+|...++|+|..+||+++||+++|+ ++.+.+|+||+.
T Consensus 512 ~GvA~~~~~~~d~~~~i~~~~~~P~Y~-~~~~~~~~~p~~ 550 (555)
T 1gq2_A 512 NNTASTYPQPEDLEAFIRSQVYSTDYN-CFVADSYTWPEE 550 (555)
T ss_dssp TTCCCCSSCCSSHHHHHHTTSCCCSCC-CCSCCCCCCCSS
T ss_pred cCCCCCCCChHHHHHHHHHhccCCCCC-CccccccCCCcc
Confidence 578888899999999999999999997 799999999963
No 5
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*
Probab=97.08 E-value=0.00042 Score=53.32 Aligned_cols=39 Identities=38% Similarity=0.731 Sum_probs=34.7
Q ss_pred hccCCCCCCCCchhhHHhhhcccccCCCCCCCccccCCCC
Q psy6139 30 MGTATVYPEPEDKLAFVKSFVYDYSYSEPSVPTSYSWPKL 69 (69)
Q Consensus 30 ~g~a~~~p~P~D~~~~V~~~~Y~~~Y~~s~lp~~y~wp~~ 69 (69)
+|+|...++|+|..+||+++||++.|. ++.+..|+||+.
T Consensus 517 ~GvA~~~~~~~d~~~~i~~~~~~p~Y~-~~~~~~~~~p~~ 555 (564)
T 1pj3_A 517 NKMAFRYPEPEDKAKYVKERTWRSEYD-SLLPDVYEWPES 555 (564)
T ss_dssp TTCCCCSSCCSSHHHHHHHTCCCCSCC-CCCCCCCCCC--
T ss_pred cCCCCCCCChHHHHHHHHHHhhCCCCC-CccccccCCCcc
Confidence 578888899999999999999999997 899999999963
No 6
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*
Probab=97.07 E-value=0.00037 Score=54.00 Aligned_cols=38 Identities=39% Similarity=0.892 Sum_probs=35.1
Q ss_pred hccCCCCCCCCchhhHHhhhcccccCCCCCCCccccCCC
Q psy6139 30 MGTATVYPEPEDKLAFVKSFVYDYSYSEPSVPTSYSWPK 68 (69)
Q Consensus 30 ~g~a~~~p~P~D~~~~V~~~~Y~~~Y~~s~lp~~y~wp~ 68 (69)
+|+|...++|+|..+||+++||+++|+ ++.+.+|+||+
T Consensus 549 ~GvA~~~~~~~d~~~~i~~~~w~P~Y~-~~~~~~~~~p~ 586 (605)
T 1o0s_A 549 NGTANLYPQPEDLEKYVRAQVYNTEYE-ELINATYDWPE 586 (605)
T ss_dssp TTCBCSSSCCSCHHHHHHHHSCCCSCC-CCSCCCBCCCG
T ss_pred cCCCCCCCChHHHHHHHHHhccCCCCC-cccccccCCCc
Confidence 578888899999999999999999997 79999999995
No 7
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.11 E-value=0.16 Score=29.16 Aligned_cols=13 Identities=23% Similarity=0.741 Sum_probs=11.3
Q ss_pred CCCeeccccchhh
Q psy6139 18 ECDTCAICRVQVM 30 (69)
Q Consensus 18 ~~d~CaICr~~~~ 30 (69)
..+.|+||++.|+
T Consensus 14 ~i~~C~IC~~~i~ 26 (74)
T 2ct0_A 14 AVKICNICHSLLI 26 (74)
T ss_dssp SSCBCSSSCCBCS
T ss_pred CCCcCcchhhHcc
Confidence 4689999999996
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=77.05 E-value=1.3 Score=25.76 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=13.9
Q ss_pred CCCeeccccchhhccCC
Q psy6139 18 ECDTCAICRVQVMGTAT 34 (69)
Q Consensus 18 ~~d~CaICr~~~~g~a~ 34 (69)
.++.|+||...|.....
T Consensus 24 ~~~~C~ICl~~~~~~~~ 40 (114)
T 1v87_A 24 PEEDCIICMEKLAVASG 40 (114)
T ss_dssp CSCEETTTTEETTSCCS
T ss_pred CCCcCccCChhhcCccc
Confidence 57899999999977543
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=61.20 E-value=2.4 Score=21.24 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=11.8
Q ss_pred cCCCeeccccchhhc
Q psy6139 17 VECDTCAICRVQVMG 31 (69)
Q Consensus 17 ~~~d~CaICr~~~~g 31 (69)
..++.|+||...|..
T Consensus 3 ~~~~~C~IC~~~~~~ 17 (55)
T 2ecm_A 3 SGSSGCPICLEDIHT 17 (55)
T ss_dssp SCCCSCTTTCCCCCT
T ss_pred CCCCcCcccChhhcC
Confidence 357899999998843
No 10
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=57.86 E-value=2.8 Score=20.99 Aligned_cols=14 Identities=21% Similarity=0.612 Sum_probs=11.5
Q ss_pred CCCeeccccchhhc
Q psy6139 18 ECDTCAICRVQVMG 31 (69)
Q Consensus 18 ~~d~CaICr~~~~g 31 (69)
+++.|+||...|..
T Consensus 4 ~~~~C~IC~~~~~~ 17 (55)
T 1iym_A 4 DGVECAVCLAELED 17 (55)
T ss_dssp CSCCCTTTCCCCCT
T ss_pred CCCcCccCCccccC
Confidence 46789999999865
No 11
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.77 E-value=3.5 Score=22.15 Aligned_cols=14 Identities=21% Similarity=0.567 Sum_probs=11.6
Q ss_pred CCCeeccccchhhc
Q psy6139 18 ECDTCAICRVQVMG 31 (69)
Q Consensus 18 ~~d~CaICr~~~~g 31 (69)
+++.|+||...|..
T Consensus 22 ~~~~C~IC~~~~~~ 35 (75)
T 1x4j_A 22 EQTLCVVCMCDFES 35 (75)
T ss_dssp SCCEETTTTEECCB
T ss_pred CCCCCeECCcccCC
Confidence 56889999998865
No 12
>1wvk_A AT2G23090/F21P24.15; structural genomics, protein structure initiative, cell free, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: g.82.1.1
Probab=54.39 E-value=3.2 Score=24.62 Aligned_cols=14 Identities=21% Similarity=0.534 Sum_probs=11.5
Q ss_pred CeeccccchhhccC
Q psy6139 20 DTCAICRVQVMGTA 33 (69)
Q Consensus 20 d~CaICr~~~~g~a 33 (69)
=.|.|||..|+.+.
T Consensus 46 i~C~VCr~tFm~t~ 59 (86)
T 1wvk_A 46 IQCKVCMQTFICTT 59 (86)
T ss_dssp EEETTTTEEECCSS
T ss_pred CCChHhHhhHHhcC
Confidence 47999999997654
No 13
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.72 E-value=3.8 Score=21.81 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=11.4
Q ss_pred CCCeeccccchhhc
Q psy6139 18 ECDTCAICRVQVMG 31 (69)
Q Consensus 18 ~~d~CaICr~~~~g 31 (69)
.++.|+||...|..
T Consensus 14 ~~~~C~IC~~~~~~ 27 (74)
T 2ep4_A 14 LHELCAVCLEDFKP 27 (74)
T ss_dssp CSCBCSSSCCBCCS
T ss_pred CCCCCcCCCcccCC
Confidence 47889999998854
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=52.56 E-value=4 Score=20.80 Aligned_cols=14 Identities=21% Similarity=0.384 Sum_probs=11.1
Q ss_pred CCCeeccccchhhc
Q psy6139 18 ECDTCAICRVQVMG 31 (69)
Q Consensus 18 ~~d~CaICr~~~~g 31 (69)
++..|+||...|.+
T Consensus 2 ~~~~C~IC~~~~~~ 15 (64)
T 2xeu_A 2 AMVSCPICMDGYSE 15 (64)
T ss_dssp CCCBCTTTCCBHHH
T ss_pred CCCCCCccChhhhC
Confidence 46789999988865
No 15
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=50.93 E-value=4.4 Score=21.21 Aligned_cols=14 Identities=21% Similarity=0.375 Sum_probs=11.8
Q ss_pred CCCeeccccchhhc
Q psy6139 18 ECDTCAICRVQVMG 31 (69)
Q Consensus 18 ~~d~CaICr~~~~g 31 (69)
++..|+||...|..
T Consensus 9 ~~~~C~IC~~~~~~ 22 (71)
T 3ng2_A 9 GTVSCPICMDGYSE 22 (71)
T ss_dssp TCCBCTTTCCBHHH
T ss_pred CCCCCcccChhhhc
Confidence 57889999998866
No 16
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=49.75 E-value=4.8 Score=21.10 Aligned_cols=14 Identities=21% Similarity=0.506 Sum_probs=11.0
Q ss_pred CCCeeccccchhhc
Q psy6139 18 ECDTCAICRVQVMG 31 (69)
Q Consensus 18 ~~d~CaICr~~~~g 31 (69)
.++.|+||...|..
T Consensus 13 ~~~~C~IC~~~~~~ 26 (69)
T 2kiz_A 13 TEEKCTICLSILEE 26 (69)
T ss_dssp CCCSBTTTTBCCCS
T ss_pred CCCCCeeCCccccC
Confidence 46789999988853
No 17
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.62 E-value=4.7 Score=20.82 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=12.3
Q ss_pred CCCeeccccchhhcc
Q psy6139 18 ECDTCAICRVQVMGT 32 (69)
Q Consensus 18 ~~d~CaICr~~~~g~ 32 (69)
++..|+||...|...
T Consensus 14 ~~~~C~IC~~~~~~~ 28 (69)
T 2ea6_A 14 GTVSCPICMDGYSEI 28 (69)
T ss_dssp CCCCCTTTCCCHHHH
T ss_pred CCCCCcccCcccccc
Confidence 567899999998764
No 18
>1e7l_A GP49, recombination endonuclease VII; resolvase, holliday junction, DNAse; HET: SO4; 1.32A {Bacteriophage T4} SCOP: a.140.4.1 d.4.1.5 PDB: 2qnc_A* 1en7_A 1e7d_A 2qnf_A*
Probab=46.12 E-value=5.6 Score=25.96 Aligned_cols=14 Identities=21% Similarity=0.598 Sum_probs=12.0
Q ss_pred CCCeeccccchhhc
Q psy6139 18 ECDTCAICRVQVMG 31 (69)
Q Consensus 18 ~~d~CaICr~~~~g 31 (69)
+...|+||+.+|++
T Consensus 19 Q~g~C~IC~~~l~~ 32 (157)
T 1e7l_A 19 QNGKCLICQRELNP 32 (157)
T ss_dssp TTTBCTTTCCBCCS
T ss_pred hCCcCcccCCcccc
Confidence 67899999998765
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=45.50 E-value=5.7 Score=20.65 Aligned_cols=14 Identities=21% Similarity=0.534 Sum_probs=10.8
Q ss_pred CCCeeccccchhhc
Q psy6139 18 ECDTCAICRVQVMG 31 (69)
Q Consensus 18 ~~d~CaICr~~~~g 31 (69)
.++.|+||...+..
T Consensus 4 ~~~~C~IC~~~~~~ 17 (68)
T 1chc_A 4 VAERCPICLEDPSN 17 (68)
T ss_dssp CCCCCSSCCSCCCS
T ss_pred CCCCCeeCCccccC
Confidence 46789999888754
No 20
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.30 E-value=6.6 Score=19.62 Aligned_cols=15 Identities=13% Similarity=0.388 Sum_probs=12.2
Q ss_pred CCCeeccccchhhcc
Q psy6139 18 ECDTCAICRVQVMGT 32 (69)
Q Consensus 18 ~~d~CaICr~~~~g~ 32 (69)
++..|.||...|...
T Consensus 14 ~~~~C~IC~~~~~~p 28 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP 28 (58)
T ss_dssp CCCBCSSSCCBCSSC
T ss_pred cCCCCccCCcccCcc
Confidence 467899999998764
No 21
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.24 E-value=6.9 Score=20.12 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=12.0
Q ss_pred CCCeeccccchhhcc
Q psy6139 18 ECDTCAICRVQVMGT 32 (69)
Q Consensus 18 ~~d~CaICr~~~~g~ 32 (69)
++..|.||...|...
T Consensus 19 ~~~~C~IC~~~~~~p 33 (63)
T 2ysj_A 19 EEVICPICLDILQKP 33 (63)
T ss_dssp CCCBCTTTCSBCSSC
T ss_pred cCCCCCcCCchhCCe
Confidence 467899999988753
No 22
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.81 E-value=6.4 Score=22.22 Aligned_cols=14 Identities=29% Similarity=0.555 Sum_probs=11.3
Q ss_pred cCCCeeccccchhh
Q psy6139 17 VECDTCAICRVQVM 30 (69)
Q Consensus 17 ~~~d~CaICr~~~~ 30 (69)
..++.|+||...|+
T Consensus 13 ~~~~~C~IC~~~~~ 26 (80)
T 2d8s_A 13 SSQDICRICHCEGD 26 (80)
T ss_dssp TTSCCCSSSCCCCC
T ss_pred CCCCCCeEcCcccc
Confidence 35789999998875
No 23
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=43.44 E-value=6.9 Score=21.97 Aligned_cols=14 Identities=21% Similarity=0.487 Sum_probs=11.1
Q ss_pred CCCeeccccchhhc
Q psy6139 18 ECDTCAICRVQVMG 31 (69)
Q Consensus 18 ~~d~CaICr~~~~g 31 (69)
.+..|+||...|..
T Consensus 39 ~~~~C~IC~~~~~~ 52 (91)
T 2l0b_A 39 QEMCCPICCSEYVK 52 (91)
T ss_dssp SCSEETTTTEECCT
T ss_pred CCCCCcccChhhcC
Confidence 46789999988854
No 24
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.67 E-value=7.3 Score=20.64 Aligned_cols=14 Identities=29% Similarity=0.596 Sum_probs=11.0
Q ss_pred CCCeeccccchhhc
Q psy6139 18 ECDTCAICRVQVMG 31 (69)
Q Consensus 18 ~~d~CaICr~~~~g 31 (69)
.+..|+||...|..
T Consensus 14 ~~~~C~IC~~~~~~ 27 (71)
T 2d8t_A 14 TVPECAICLQTCVH 27 (71)
T ss_dssp SCCBCSSSSSBCSS
T ss_pred CCCCCccCCcccCC
Confidence 46789999988754
No 25
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=41.22 E-value=4.4 Score=26.21 Aligned_cols=14 Identities=21% Similarity=0.536 Sum_probs=12.3
Q ss_pred CeeccccchhhccC
Q psy6139 20 DTCAICRVQVMGTA 33 (69)
Q Consensus 20 d~CaICr~~~~g~a 33 (69)
--||+||+-+.+.+
T Consensus 110 ~PCG~CRQvL~Ef~ 123 (158)
T 3oj6_A 110 SPCGRCRQVLADLH 123 (158)
T ss_dssp CCCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHhC
Confidence 47999999999885
No 26
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=38.32 E-value=3.7 Score=26.02 Aligned_cols=15 Identities=20% Similarity=0.570 Sum_probs=12.6
Q ss_pred CCeeccccchhhccC
Q psy6139 19 CDTCAICRVQVMGTA 33 (69)
Q Consensus 19 ~d~CaICr~~~~g~a 33 (69)
.--||+||+-+.+.+
T Consensus 93 ~~PCG~CRQ~l~Ef~ 107 (138)
T 3dmo_A 93 IAPCGACRQVMIELG 107 (138)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhC
Confidence 357999999998876
No 27
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=38.21 E-value=5.3 Score=25.20 Aligned_cols=16 Identities=19% Similarity=0.532 Sum_probs=13.3
Q ss_pred CCeeccccchhhccCC
Q psy6139 19 CDTCAICRVQVMGTAT 34 (69)
Q Consensus 19 ~d~CaICr~~~~g~a~ 34 (69)
..-||.||+.+.+.+.
T Consensus 92 ~~PCG~CRQ~l~E~~~ 107 (141)
T 2d30_A 92 VPPCGACRQVMVELCK 107 (141)
T ss_dssp CCCCHHHHHHHHHHSC
T ss_pred cCcCHHHHHHHHHhcC
Confidence 3579999999999864
No 28
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=37.09 E-value=10 Score=20.07 Aligned_cols=14 Identities=36% Similarity=0.529 Sum_probs=10.8
Q ss_pred CCCeeccccchhhc
Q psy6139 18 ECDTCAICRVQVMG 31 (69)
Q Consensus 18 ~~d~CaICr~~~~g 31 (69)
++..|.||...|..
T Consensus 11 ~~~~C~IC~~~~~~ 24 (79)
T 2egp_A 11 EEVTCPICLELLTE 24 (79)
T ss_dssp CCCEETTTTEECSS
T ss_pred cCCCCcCCCcccCC
Confidence 46789999888755
No 29
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=36.97 E-value=4.2 Score=26.13 Aligned_cols=15 Identities=20% Similarity=0.507 Sum_probs=12.5
Q ss_pred CeeccccchhhccCC
Q psy6139 20 DTCAICRVQVMGTAT 34 (69)
Q Consensus 20 d~CaICr~~~~g~a~ 34 (69)
--||+||+-+.+.+.
T Consensus 106 ~PCG~CRQ~L~Ef~~ 120 (150)
T 3mpz_A 106 MPCGRCRQVLLEHGG 120 (150)
T ss_dssp CCCHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHhCC
Confidence 479999999988763
No 30
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.14 E-value=10 Score=19.81 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=11.3
Q ss_pred CCCeeccccchhhc
Q psy6139 18 ECDTCAICRVQVMG 31 (69)
Q Consensus 18 ~~d~CaICr~~~~g 31 (69)
.+..|.||...|..
T Consensus 19 ~~~~C~IC~~~~~~ 32 (73)
T 2ysl_A 19 EEVICPICLDILQK 32 (73)
T ss_dssp CCCBCTTTCSBCSS
T ss_pred cCCEeccCCcccCC
Confidence 45789999998865
No 31
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=34.51 E-value=11 Score=20.02 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=10.7
Q ss_pred CCCeeccccchhhc
Q psy6139 18 ECDTCAICRVQVMG 31 (69)
Q Consensus 18 ~~d~CaICr~~~~g 31 (69)
++..|.||...|..
T Consensus 18 ~~~~C~IC~~~~~~ 31 (85)
T 2ecw_A 18 EEVTCPICLELLKE 31 (85)
T ss_dssp TTTSCTTTCSCCSS
T ss_pred cCCCCcCCChhhCc
Confidence 46789999888754
No 32
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.46 E-value=15 Score=19.15 Aligned_cols=14 Identities=21% Similarity=0.515 Sum_probs=9.5
Q ss_pred CCCeeccccchhhc
Q psy6139 18 ECDTCAICRVQVMG 31 (69)
Q Consensus 18 ~~d~CaICr~~~~g 31 (69)
.+..|.||...+..
T Consensus 14 ~~~~C~IC~~~~~~ 27 (70)
T 2ecn_A 14 DEEECCICMDGRAD 27 (70)
T ss_dssp CCCCCSSSCCSCCS
T ss_pred CCCCCeeCCcCccC
Confidence 35678888777644
No 33
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=33.77 E-value=5.1 Score=25.25 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=13.0
Q ss_pred CCeeccccchhhccCC
Q psy6139 19 CDTCAICRVQVMGTAT 34 (69)
Q Consensus 19 ~d~CaICr~~~~g~a~ 34 (69)
.--||+||+.+.+.+.
T Consensus 90 ~~PCG~CRQ~l~E~~~ 105 (138)
T 3r2n_A 90 LMPCGRCRQLLYEHGG 105 (138)
T ss_dssp CCCCHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHhCC
Confidence 3579999999988763
No 34
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=33.43 E-value=13 Score=19.64 Aligned_cols=13 Identities=31% Similarity=0.779 Sum_probs=10.3
Q ss_pred ecCCCeeccccch
Q psy6139 16 DVECDTCAICRVQ 28 (69)
Q Consensus 16 ~~~~d~CaICr~~ 28 (69)
|+.++.|.+|+..
T Consensus 2 d~~~~~C~vC~~~ 14 (60)
T 2puy_A 2 MIHEDFCSVCRKS 14 (60)
T ss_dssp CCCCSSCTTTCCC
T ss_pred CCCCCCCcCCCCC
Confidence 4678999999864
No 35
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=32.41 E-value=9.3 Score=23.86 Aligned_cols=15 Identities=20% Similarity=0.574 Sum_probs=13.0
Q ss_pred CeeccccchhhccCC
Q psy6139 20 DTCAICRVQVMGTAT 34 (69)
Q Consensus 20 d~CaICr~~~~g~a~ 34 (69)
.-||.||+.+...+.
T Consensus 94 ~PCG~CRq~l~e~~~ 108 (142)
T 1r5t_A 94 SPCGVCRQFINEFVV 108 (142)
T ss_dssp CCCHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHhCC
Confidence 579999999999864
No 36
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.07 E-value=13 Score=19.70 Aligned_cols=14 Identities=36% Similarity=0.524 Sum_probs=11.1
Q ss_pred CCCeeccccchhhc
Q psy6139 18 ECDTCAICRVQVMG 31 (69)
Q Consensus 18 ~~d~CaICr~~~~g 31 (69)
++..|.||...|..
T Consensus 18 ~~~~C~IC~~~~~~ 31 (85)
T 2ecv_A 18 EEVTCPICLELLTQ 31 (85)
T ss_dssp CCCCCTTTCSCCSS
T ss_pred CCCCCCCCCcccCC
Confidence 46789999988865
No 37
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=31.91 E-value=4.4 Score=27.61 Aligned_cols=39 Identities=26% Similarity=0.439 Sum_probs=31.4
Q ss_pred CCCeeccccchhhccCCCC--CCCCchhhHHhhhcccccCC
Q psy6139 18 ECDTCAICRVQVMGTATVY--PEPEDKLAFVKSFVYDYSYS 56 (69)
Q Consensus 18 ~~d~CaICr~~~~g~a~~~--p~P~D~~~~V~~~~Y~~~Y~ 56 (69)
+.|.|.||+++-.+....| -.|.|.-++=++..|+=-|.
T Consensus 79 e~~~C~IC~d~~Rd~~~iCVVE~~~Dv~aiE~t~~y~G~Yh 119 (212)
T 3vdp_A 79 DKEVCDICSDENRDHSTICVVSHPMDVVAMEKVKEYKGVYH 119 (212)
T ss_dssp SSSSCHHHHCTTSEEEEEEEESSHHHHHHHHTTSCCCEEEE
T ss_pred CCCcCCCCCCCCCCCCEEEEECCHHHHHHHHhhCccceEEE
Confidence 6789999999887655544 57889999999998887775
No 38
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.90 E-value=13 Score=19.98 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=10.7
Q ss_pred CCCeeccccchhhc
Q psy6139 18 ECDTCAICRVQVMG 31 (69)
Q Consensus 18 ~~d~CaICr~~~~g 31 (69)
++..|+||...|..
T Consensus 14 ~~~~C~IC~~~~~~ 27 (88)
T 2ct2_A 14 EVLECPICMESFTE 27 (88)
T ss_dssp SCCBCTTTCCBCCT
T ss_pred CCCCCccCCccccc
Confidence 35679999988765
No 39
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=31.26 E-value=17 Score=18.71 Aligned_cols=15 Identities=13% Similarity=0.492 Sum_probs=9.9
Q ss_pred CCCeeccccc-hhhcc
Q psy6139 18 ECDTCAICRV-QVMGT 32 (69)
Q Consensus 18 ~~d~CaICr~-~~~g~ 32 (69)
++..|.||.. .|.+.
T Consensus 2 ~~~~C~IC~~~~~~~~ 17 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNP 17 (65)
T ss_dssp CTTCCSTTTTHHHHCS
T ss_pred CCCcCCcCCCCccCCC
Confidence 4567888887 55443
No 40
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.23 E-value=9.9 Score=20.13 Aligned_cols=14 Identities=21% Similarity=0.574 Sum_probs=11.0
Q ss_pred CCCeeccccchhhc
Q psy6139 18 ECDTCAICRVQVMG 31 (69)
Q Consensus 18 ~~d~CaICr~~~~g 31 (69)
++..|.||...|..
T Consensus 14 ~~~~C~IC~~~~~~ 27 (72)
T 2djb_A 14 PYILCSICKGYLID 27 (72)
T ss_dssp GGGSCTTTSSCCSS
T ss_pred CCCCCCCCChHHHC
Confidence 35689999988865
No 41
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=31.03 E-value=11 Score=23.53 Aligned_cols=14 Identities=14% Similarity=0.579 Sum_probs=12.1
Q ss_pred eeccccchhhccCC
Q psy6139 21 TCAICRVQVMGTAT 34 (69)
Q Consensus 21 ~CaICr~~~~g~a~ 34 (69)
-||.||+.+...++
T Consensus 88 PCG~CRq~l~e~~~ 101 (142)
T 3b8f_A 88 PCGVCQERLFYWGP 101 (142)
T ss_dssp CCHHHHHHHGGGCT
T ss_pred cHHHHHHHHHHhCC
Confidence 69999999998853
No 42
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=30.99 E-value=11 Score=20.15 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=10.7
Q ss_pred CCCeeccccchhhc
Q psy6139 18 ECDTCAICRVQVMG 31 (69)
Q Consensus 18 ~~d~CaICr~~~~g 31 (69)
++..|.||...|..
T Consensus 14 ~~~~C~IC~~~~~~ 27 (74)
T 2yur_A 14 DELLCLICKDIMTD 27 (74)
T ss_dssp GGGSCSSSCCCCTT
T ss_pred CCCCCcCCChHHhC
Confidence 35679999888865
No 43
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=30.92 E-value=8 Score=23.78 Aligned_cols=14 Identities=21% Similarity=0.619 Sum_probs=12.4
Q ss_pred CeeccccchhhccC
Q psy6139 20 DTCAICRVQVMGTA 33 (69)
Q Consensus 20 d~CaICr~~~~g~a 33 (69)
.-||.||+.+...+
T Consensus 86 ~PCG~Crq~l~e~~ 99 (130)
T 2z3g_A 86 SPCGRCRQVLLDLH 99 (130)
T ss_dssp CCCHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHhC
Confidence 47999999999986
No 44
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=30.46 E-value=15 Score=18.69 Aligned_cols=14 Identities=14% Similarity=0.420 Sum_probs=10.6
Q ss_pred CCCeeccccchhhc
Q psy6139 18 ECDTCAICRVQVMG 31 (69)
Q Consensus 18 ~~d~CaICr~~~~g 31 (69)
++-.|+||...|..
T Consensus 5 ~~~~C~IC~~~~~~ 18 (56)
T 1bor_A 5 QFLRCQQCQAEAKC 18 (56)
T ss_dssp CCSSCSSSCSSCBC
T ss_pred cCCCceEeCCccCC
Confidence 45679999888765
No 45
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=30.27 E-value=22 Score=20.74 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=13.3
Q ss_pred cCCCeeccccchhhc----cCCCCCC
Q psy6139 17 VECDTCAICRVQVMG----TATVYPE 38 (69)
Q Consensus 17 ~~~d~CaICr~~~~g----~a~~~p~ 38 (69)
..+|.|+||...=+. .|..|++
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~ 30 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQ 30 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCC
Confidence 467888888765432 4555543
No 46
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=29.69 E-value=18 Score=21.11 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=20.9
Q ss_pred CCCeeccccchhhccCCCCCCCCch
Q psy6139 18 ECDTCAICRVQVMGTATVYPEPEDK 42 (69)
Q Consensus 18 ~~d~CaICr~~~~g~a~~~p~P~D~ 42 (69)
..-.|++|...|.-.-+..-+|-|.
T Consensus 46 g~l~C~~Cg~~~~~~i~~L~epiDV 70 (85)
T 1wii_A 46 GVISCTVCLEEFQTPITYLSEPVDV 70 (85)
T ss_dssp EEEEESSSCCEEEEECCSSCCTTHH
T ss_pred EEEEcccCCCeEEeccCccCcchhh
Confidence 4568999999998888888888775
No 47
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=28.00 E-value=11 Score=23.71 Aligned_cols=15 Identities=20% Similarity=0.474 Sum_probs=12.8
Q ss_pred CCeeccccchhhccC
Q psy6139 19 CDTCAICRVQVMGTA 33 (69)
Q Consensus 19 ~d~CaICr~~~~g~a 33 (69)
..-||.||+.+.+.+
T Consensus 96 ~~PCG~Crq~l~E~~ 110 (146)
T 2fr5_A 96 ISPCGACRQVMREFG 110 (146)
T ss_dssp CCCCHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHhC
Confidence 347999999999987
No 48
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=27.96 E-value=13 Score=26.38 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=13.9
Q ss_pred CCeeccccchhhccCC
Q psy6139 19 CDTCAICRVQVMGTAT 34 (69)
Q Consensus 19 ~d~CaICr~~~~g~a~ 34 (69)
.--||+||+-+.+.+.
T Consensus 129 ~~PCG~CRQ~l~Ef~~ 144 (298)
T 4eg2_A 129 FSPCGHCRQFMNELTT 144 (298)
T ss_dssp SCCCHHHHHHHTTBTT
T ss_pred cCCCHHHHHHHHHhcC
Confidence 5789999999998864
No 49
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.85 E-value=22 Score=18.81 Aligned_cols=13 Identities=15% Similarity=0.524 Sum_probs=8.9
Q ss_pred CCCeeccccchhh
Q psy6139 18 ECDTCAICRVQVM 30 (69)
Q Consensus 18 ~~d~CaICr~~~~ 30 (69)
.+..|+||...|.
T Consensus 14 ~~~~C~IC~~~~~ 26 (78)
T 2ect_A 14 SGLECPVCKEDYA 26 (78)
T ss_dssp SSCCCTTTTSCCC
T ss_pred CCCCCeeCCcccc
Confidence 4567888877664
No 50
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.79 E-value=15 Score=18.91 Aligned_cols=15 Identities=13% Similarity=0.454 Sum_probs=11.3
Q ss_pred CCCeeccccchhhcc
Q psy6139 18 ECDTCAICRVQVMGT 32 (69)
Q Consensus 18 ~~d~CaICr~~~~g~ 32 (69)
++..|.||...+...
T Consensus 14 ~~~~C~IC~~~~~~p 28 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSP 28 (66)
T ss_dssp CCEECTTTCCEESSC
T ss_pred cCCCCCCCChHhcCe
Confidence 356799999888653
No 51
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*
Probab=26.73 E-value=8.8 Score=28.29 Aligned_cols=26 Identities=15% Similarity=-0.017 Sum_probs=22.4
Q ss_pred hccCCCCCCCCchhhHHhhhcccccC
Q psy6139 30 MGTATVYPEPEDKLAFVKSFVYDYSY 55 (69)
Q Consensus 30 ~g~a~~~p~P~D~~~~V~~~~Y~~~Y 55 (69)
+|.|...++|.|..++|+++||+..+
T Consensus 395 ~g~a~~~~~~~~~~~~~~~~~~~~~~ 420 (439)
T 2dvm_A 395 EGVARTKVKGEWVEEHTIRLIEFYEN 420 (439)
T ss_dssp HTCCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCChHHHHHHHHHHhhhhHH
Confidence 47888778899999999999998765
No 52
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=26.44 E-value=13 Score=24.56 Aligned_cols=25 Identities=12% Similarity=0.073 Sum_probs=21.0
Q ss_pred EeecCCCeeccccchhhccCCCCCC
Q psy6139 14 SWDVECDTCAICRVQVMGTATVYPE 38 (69)
Q Consensus 14 ~W~~~~d~CaICr~~~~g~a~~~p~ 38 (69)
.|+..+=.|+.|++=|++.|..++.
T Consensus 15 ~~~~~mLqC~~C~qWFH~~Cl~~~~ 39 (177)
T 3rsn_A 15 QLGEVELQCGICTKWFTADTFGIDT 39 (177)
T ss_dssp CTTSCEEECTTTCCEEEGGGGTCCC
T ss_pred CCCceeEeeccccceecHHHhcccc
Confidence 4567778899999999999998764
No 53
>1k3s_A SIGE; type III, secretion, chaperone; 1.90A {Salmonella enterica} SCOP: d.198.1.1
Probab=25.53 E-value=4.8 Score=25.02 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=20.3
Q ss_pred hhhccCCCCCCCCchhhHHhhhcccccCC
Q psy6139 28 QVMGTATVYPEPEDKLAFVKSFVYDYSYS 56 (69)
Q Consensus 28 ~~~g~a~~~p~P~D~~~~V~~~~Y~~~Y~ 56 (69)
.++-+||.||.|+|...++ +.-+.+|.
T Consensus 39 ~lem~CPf~~lPd~i~~Lq--~~L~lNY~ 65 (113)
T 1k3s_A 39 TLEMCCPFMPLPDDILTLQ--HFLRLNYT 65 (113)
T ss_dssp EEEEEEEEEECCCSHHHHH--HHHHHHHH
T ss_pred hhhccCCcccCcchHHHHH--HHHhhccc
Confidence 3577899999999999876 44455564
No 54
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=25.11 E-value=6.9 Score=26.96 Aligned_cols=39 Identities=26% Similarity=0.471 Sum_probs=29.8
Q ss_pred CCCeeccccchhhccCCCC--CCCCchhhHHhhhcccccCC
Q psy6139 18 ECDTCAICRVQVMGTATVY--PEPEDKLAFVKSFVYDYSYS 56 (69)
Q Consensus 18 ~~d~CaICr~~~~g~a~~~--p~P~D~~~~V~~~~Y~~~Y~ 56 (69)
+.|.|.||+++-.+....| -.|.|.-++=++..|+=-|.
T Consensus 65 e~~~C~IC~d~~Rd~~~iCVVE~~~Dv~aiE~t~~y~G~Yh 105 (228)
T 1vdd_A 65 DAEKCDVCADPSRDQRTICVVEEPGDVIALERSGEYRGLYH 105 (228)
T ss_dssp SSSSCHHHHCSSSCTTEEEEESSHHHHHHTTTTSSCCSEEE
T ss_pred CCCcCCCCCCCCcCCCeEEEECCHHHHHHHHHhcccceEEE
Confidence 6899999998876544433 57888888888888887774
No 55
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=24.17 E-value=16 Score=23.40 Aligned_cols=9 Identities=44% Similarity=1.424 Sum_probs=7.7
Q ss_pred Ceeccccch
Q psy6139 20 DTCAICRVQ 28 (69)
Q Consensus 20 d~CaICr~~ 28 (69)
|.|||||.=
T Consensus 102 ~~CgiCR~G 110 (143)
T 2dkt_A 102 ESCGICRIG 110 (143)
T ss_dssp TTTTEEEES
T ss_pred CCCCceecc
Confidence 689999985
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=23.93 E-value=22 Score=20.32 Aligned_cols=14 Identities=21% Similarity=0.375 Sum_probs=10.9
Q ss_pred CCCeeccccchhhc
Q psy6139 18 ECDTCAICRVQVMG 31 (69)
Q Consensus 18 ~~d~CaICr~~~~g 31 (69)
++..|+||...|..
T Consensus 6 ~~~~C~IC~~~~~~ 19 (133)
T 4ap4_A 6 GTVSCPICMDGYSE 19 (133)
T ss_dssp CSCBCTTTCCBHHH
T ss_pred CCCCCcccChhhhC
Confidence 46789999888754
No 57
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=23.57 E-value=22 Score=18.84 Aligned_cols=13 Identities=15% Similarity=0.138 Sum_probs=8.9
Q ss_pred CCeeccccchhhc
Q psy6139 19 CDTCAICRVQVMG 31 (69)
Q Consensus 19 ~d~CaICr~~~~g 31 (69)
+-.|.||...|.+
T Consensus 8 ~~~C~IC~~~~~~ 20 (78)
T 1t1h_A 8 YFRCPISLELMKD 20 (78)
T ss_dssp SSSCTTTSCCCSS
T ss_pred cCCCCCccccccC
Confidence 5578888777743
No 58
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.14 E-value=24 Score=18.90 Aligned_cols=13 Identities=31% Similarity=0.498 Sum_probs=9.4
Q ss_pred CCeeccccchhhc
Q psy6139 19 CDTCAICRVQVMG 31 (69)
Q Consensus 19 ~d~CaICr~~~~g 31 (69)
+..|.||...|..
T Consensus 15 ~~~C~IC~~~~~~ 27 (81)
T 2csy_A 15 PFRCFICRQAFQN 27 (81)
T ss_dssp CSBCSSSCSBCCS
T ss_pred CCCCcCCCchhcC
Confidence 4479999887744
No 59
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=22.90 E-value=26 Score=19.16 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=9.9
Q ss_pred CCCeeccccchhhc
Q psy6139 18 ECDTCAICRVQVMG 31 (69)
Q Consensus 18 ~~d~CaICr~~~~g 31 (69)
++-.|.||...|.+
T Consensus 12 ~~~~C~IC~~~~~~ 25 (92)
T 3ztg_A 12 DELLCLICKDIMTD 25 (92)
T ss_dssp TTTEETTTTEECSS
T ss_pred cCCCCCCCChhhcC
Confidence 35678888877754
No 60
>2l9z_A PR domain zinc finger protein 4; zinc-binding domain, transcription; NMR {Homo sapiens}
Probab=22.89 E-value=25 Score=17.94 Aligned_cols=16 Identities=13% Similarity=0.289 Sum_probs=13.6
Q ss_pred eeccccchhhccCCCC
Q psy6139 21 TCAICRVQVMGTATVY 36 (69)
Q Consensus 21 ~CaICr~~~~g~a~~~ 36 (69)
-|-.|++.|.+-|+..
T Consensus 13 ~CE~C~~~~~~~Cp~H 28 (39)
T 2l9z_A 13 WCTLCDRAYPSDCPEH 28 (39)
T ss_dssp EEGGGTEEESSSBTTT
T ss_pred HHHHHhhhchhhchhc
Confidence 5999999999988765
No 61
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=22.64 E-value=22 Score=19.40 Aligned_cols=13 Identities=31% Similarity=0.636 Sum_probs=9.0
Q ss_pred CCCeeccccchhh
Q psy6139 18 ECDTCAICRVQVM 30 (69)
Q Consensus 18 ~~d~CaICr~~~~ 30 (69)
....|++|+.+.+
T Consensus 7 ~~~~C~~C~~p~~ 19 (65)
T 2vpb_A 7 PVYPCGICTNEVN 19 (65)
T ss_dssp --CBCTTTCSBCC
T ss_pred CcCcCccCCCccC
Confidence 4678999998864
No 62
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=22.61 E-value=19 Score=18.83 Aligned_cols=9 Identities=33% Similarity=1.280 Sum_probs=4.2
Q ss_pred eeccccchh
Q psy6139 21 TCAICRVQV 29 (69)
Q Consensus 21 ~CaICr~~~ 29 (69)
.|-|||..+
T Consensus 46 ~CPiCR~~i 54 (63)
T 2vje_B 46 SCPICKKEI 54 (63)
T ss_dssp BCTTTCCBC
T ss_pred cCCCcCchh
Confidence 444444444
No 63
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=21.25 E-value=22 Score=20.18 Aligned_cols=14 Identities=14% Similarity=0.387 Sum_probs=9.6
Q ss_pred CCCeeccccchhhc
Q psy6139 18 ECDTCAICRVQVMG 31 (69)
Q Consensus 18 ~~d~CaICr~~~~g 31 (69)
++..|.||...|.+
T Consensus 14 ~~~~C~IC~~~~~~ 27 (108)
T 2ckl_A 14 PHLMCVLCGGYFID 27 (108)
T ss_dssp GGTBCTTTSSBCSS
T ss_pred CcCCCccCChHHhC
Confidence 35678888877643
Done!