RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6139
(69 letters)
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA
complex, DNA-binding protein- complex; HET: DNA 3DR;
5.93A {Mus musculus}
Length = 117
Score = 54.5 bits (130), Expect = 1e-11
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 1 MFTLKKWNAVAMWSWDVECDTCAICRVQVMGTATVYPEPE 40
F +KKWNAVA+W+WD+ D CAICR +M +
Sbjct: 30 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 69
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 51.4 bits (123), Expect = 8e-11
Identities = 19/29 (65%), Positives = 20/29 (68%)
Query: 7 WNAVAMWSWDVECDTCAICRVQVMGTATV 35
+ MWSWDVECDTCAICRVQVM
Sbjct: 3 SGSSGMWSWDVECDTCAICRVQVMDACLR 31
Score = 24.9 bits (54), Expect = 1.6
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 7 WNAVAMWSWDVECDTCAICR 26
++ M W + + C +C+
Sbjct: 52 FHNCCMSLWVKQNNRCPLCQ 71
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus
interaction, receptor, UBL conjugation, UBL conjugation
pathway, acetylation, cytoplasm; 2.60A {Homo sapiens}
SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D
4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Length = 106
Score = 50.2 bits (119), Expect = 4e-10
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 1 MFTLKKWNAVAMWSWDVECDTCAICRVQVMGTATVYPEP 39
F +KKWNAVA+W+WD+ D CAICR +M
Sbjct: 19 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQAN 57
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent,
NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET:
NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB:
2aw5_A
Length = 555
Score = 50.0 bits (120), Expect = 2e-09
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 31 GTATVYPEPEDKLAFVKSFVYDYSYSEPSVPTSYSWPK 68
TA+ YP+PED AF++S VY Y V SY+WP+
Sbjct: 513 NTASTYPQPEDLEAFIRSQVYSTDY-NCFVADSYTWPE 549
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase,
oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP:
c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A*
1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*
Length = 564
Score = 48.9 bits (117), Expect = 7e-09
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 31 GTATVYPEPEDKLAFVKSFVYDYSYSEPSVPTSYSWPK 68
A YPEPEDK +VK + Y + +P Y WP+
Sbjct: 518 KMAFRYPEPEDKAKYVKERTWRSEY-DSLLPDVYEWPE 554
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative
decarboxylase, rossmann fold, MAla dehydrogenase; HET:
NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB:
1llq_A*
Length = 605
Score = 48.6 bits (116), Expect = 8e-09
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 31 GTATVYPEPEDKLAFVKSFVYDYSYSEPSVPTSYSWPK 68
GTA +YP+PED +V++ VY+ Y E + +Y WP+
Sbjct: 550 GTANLYPQPEDLEKYVRAQVYNTEY-EELINATYDWPE 586
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor
protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus
musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A*
1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A*
2hxf_C* 1ia0_K* 2hxh_C*
Length = 366
Score = 30.2 bits (69), Expect = 0.031
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 18 ECDTCAICRVQVMGTATVYPEPEDKLAFVKSFVYDYSYSEPSVPTS 63
E + C +Q+ G+ T P+ KSF +DYSY + P
Sbjct: 19 EMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPED 64
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 24.2 bits (53), Expect = 3.7
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 16 DVECDTCAICRVQVMGTATVYPEPEDKLAFVKSFVYDYSY 55
D + ++ Q A ++ KSF +D S+
Sbjct: 65 DPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSF 104
>2asf_A Hypothetical protein RV2074; H37RV, structural genomics, PSI,
protein structure initiative, TB structural genomics
consortium, TBSGC; HET: CIT; 1.60A {Mycobacterium
tuberculosis} SCOP: b.45.1.1
Length = 137
Score = 23.7 bits (51), Expect = 5.5
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 27 VQVMGTATVYPEPEDKLAFVKSFVYDYSYSEP 58
+ + G A V + + + Y P
Sbjct: 82 LSLEGRAAVNSDIDAVRDAELRYAQRYRTPRP 113
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1,
ring domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 22.8 bits (49), Expect = 7.9
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 18 ECDTCAICRVQVMGTATVY 36
C +CR V + +
Sbjct: 45 YFQQCPMCRQFVQESFALS 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase
complex, ring zinc-finger, UBL conjugation pathway;
2.10A {Homo sapiens} PDB: 2yhn_A
Length = 79
Score = 22.8 bits (49), Expect = 8.1
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 18 ECDTCAICRVQVMGTATVY 36
+ +C +CR +V VY
Sbjct: 48 QLQSCPVCRSRVEHVQHVY 66
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.131 0.452
Gapped
Lambda K H
0.267 0.0475 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,082,642
Number of extensions: 45800
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 17
Length of query: 69
Length of database: 6,701,793
Length adjustment: 39
Effective length of query: 30
Effective length of database: 5,612,874
Effective search space: 168386220
Effective search space used: 168386220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.0 bits)