RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6139
         (69 letters)



>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
          ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 88

 Score = 49.4 bits (117), Expect = 2e-10
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 2  FTLKKWNAVAMWSWDVECDTCAICRVQVMGTATVYPEPEDK 42
          F +KKWNAVA+W+WD+  D CAICR  +M         +  
Sbjct: 4  FEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQAS 44


>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic
           enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
          Length = 298

 Score = 47.7 bits (113), Expect = 7e-09
 Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 31  GTATVYPEPEDKLAFVKSFVYDYSYSEPSVPTSYSWPK 68
            TA+ YP+PED  AF++S VY   Y    V  SY+WP+
Sbjct: 256 NTASTYPQPEDLEAFIRSQVYSTDY-NCFVADSYTWPE 292


>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic
           enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
          Length = 308

 Score = 46.9 bits (111), Expect = 1e-08
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 31  GTATVYPEPEDKLAFVKSFVYDYSYSEPSVPTSYSWPK 68
           GTA +YP+PED   +V++ VY+  Y E  +  +Y WP+
Sbjct: 255 GTANLYPQPEDLEKYVRAQVYNTEY-EELINATYDWPE 291


>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic
           enzyme {Human (Homo sapiens) [TaxId: 9606]}
          Length = 294

 Score = 45.0 bits (106), Expect = 7e-08
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 31  GTATVYPEPEDKLAFVKSFVYDYSYSEPSVPTSYSWP 67
             A  YPEPEDK  +VK   +   Y +  +P  Y WP
Sbjct: 259 KMAFRYPEPEDKAKYVKERTWRSEY-DSLLPDVYEWP 294


>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
          [TaxId: 10090]}
          Length = 349

 Score = 24.9 bits (53), Expect = 0.88
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 18 ECDTCAICRVQVMGTATVYPEPEDKLAFVKSFVYDYSYSEPSVP 61
          E    + C +Q+ G+ T    P+      KSF +DYSY   + P
Sbjct: 16 EMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSP 59


>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger
          domain-containing protein 1 {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 56

 Score = 22.3 bits (48), Expect = 3.4
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 19 CDTCAICRV 27
          C++C ICR+
Sbjct: 20 CESCGICRI 28


>d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha
          subunit {Methylococcus capsulatus [TaxId: 414]}
          Length = 512

 Score = 22.9 bits (49), Expect = 4.5
 Identities = 6/36 (16%), Positives = 14/36 (38%)

Query: 33 ATVYPEPEDKLAFVKSFVYDYSYSEPSVPTSYSWPK 68
          A      ++   +++SF +D+  +     T Y    
Sbjct: 5  APTSVNAQEVHRWLQSFNWDFKNNRTKYATKYKMAN 40


>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 79

 Score = 21.9 bits (46), Expect = 6.3
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 15 WDVECDTCAICRVQVMGTATVYPEP 39
           + E   C  CR ++ GT  +  +P
Sbjct: 54 QESEGQGCPFCRCEIKGTEPIVVDP 78


>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 64

 Score = 21.6 bits (45), Expect = 8.1
 Identities = 5/16 (31%), Positives = 6/16 (37%)

Query: 13 WSWDVECDTCAICRVQ 28
          W+ D E   C  C   
Sbjct: 2  WAEDNEVQNCMACGKG 17


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.131    0.452 

Gapped
Lambda     K      H
   0.267   0.0510    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 285,701
Number of extensions: 10284
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 10
Length of query: 69
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 32
Effective length of database: 1,899,586
Effective search space: 60786752
Effective search space used: 60786752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)