Query psy6141
Match_columns 144
No_of_seqs 175 out of 1582
Neff 10.8
Searched_HMMs 46136
Date Fri Aug 16 18:43:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6141.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6141hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02332 HpaX 4-hydroxyphenyl 99.9 8.4E-21 1.8E-25 135.6 10.7 137 2-141 4-140 (412)
2 PRK03545 putative arabinose tr 99.8 6.7E-20 1.5E-24 129.9 10.8 137 2-141 5-141 (390)
3 TIGR00891 2A0112 putative sial 99.8 1.4E-19 3E-24 128.1 10.5 138 2-142 8-145 (405)
4 TIGR01299 synapt_SV2 synaptic 99.8 1.8E-19 3.9E-24 135.8 10.1 136 3-141 164-299 (742)
5 PRK14995 methyl viologen resis 99.8 2.5E-19 5.3E-24 130.7 10.5 139 1-142 1-140 (495)
6 PRK12307 putative sialic acid 99.8 3.4E-19 7.3E-24 127.5 10.4 137 3-142 15-151 (426)
7 COG2814 AraJ Arabinose efflux 99.8 5.7E-19 1.2E-23 123.7 10.8 137 2-141 9-145 (394)
8 PRK10077 xylE D-xylose transpo 99.8 4.5E-19 9.8E-24 128.5 10.4 138 4-141 10-164 (479)
9 PRK10213 nepI ribonucleoside t 99.8 6.5E-19 1.4E-23 125.3 10.9 136 3-141 17-152 (394)
10 PRK11551 putative 3-hydroxyphe 99.8 6.8E-19 1.5E-23 125.2 10.3 137 3-142 12-148 (406)
11 PRK03633 putative MFS family t 99.8 1.3E-18 2.8E-23 123.1 10.7 137 2-141 2-138 (381)
12 PRK09556 uhpT sugar phosphate 99.8 7.9E-19 1.7E-23 127.2 9.6 132 8-142 31-167 (467)
13 PRK10406 alpha-ketoglutarate t 99.8 1E-18 2.3E-23 125.5 9.6 135 3-140 19-167 (432)
14 TIGR00710 efflux_Bcr_CflA drug 99.8 2.4E-18 5.3E-23 121.2 10.7 133 6-141 5-137 (385)
15 PRK03699 putative transporter; 99.8 2.8E-18 6.1E-23 121.9 10.1 136 2-140 3-138 (394)
16 TIGR00711 efflux_EmrB drug res 99.8 2.5E-18 5.5E-23 124.6 9.6 132 7-141 3-134 (485)
17 TIGR00887 2A0109 phosphate:H+ 99.8 3E-18 6.4E-23 125.2 9.7 141 2-142 12-160 (502)
18 PRK11663 regulatory protein Uh 99.8 4.3E-18 9.2E-23 122.4 9.9 134 6-142 23-156 (434)
19 PRK10642 proline/glycine betai 99.8 4.4E-18 9.5E-23 124.1 10.1 133 5-140 15-161 (490)
20 KOG1330|consensus 99.8 4.1E-18 8.9E-23 120.2 8.6 138 3-143 30-167 (493)
21 PRK10091 MFS transport protein 99.8 8.4E-18 1.8E-22 119.0 10.1 130 8-140 5-134 (382)
22 PRK10504 putative transporter; 99.8 8.5E-18 1.9E-22 121.8 10.3 134 5-141 9-142 (471)
23 PRK03893 putative sialic acid 99.8 8.5E-18 1.8E-22 122.4 10.2 136 3-141 17-152 (496)
24 TIGR00895 2A0115 benzoate tran 99.8 1.1E-17 2.4E-22 118.0 10.3 136 4-142 15-150 (398)
25 PRK09705 cynX putative cyanate 99.8 1.5E-17 3.1E-22 118.3 10.9 114 23-140 26-139 (393)
26 TIGR00890 2A0111 Oxalate/Forma 99.7 5.2E-18 1.1E-22 118.8 8.2 127 11-142 9-135 (377)
27 PRK15402 multidrug efflux syst 99.7 2.1E-17 4.6E-22 117.7 11.2 135 3-140 10-144 (406)
28 PRK15075 citrate-proton sympor 99.7 1.1E-17 2.3E-22 120.3 9.6 135 3-140 12-160 (434)
29 PRK12382 putative transporter; 99.7 1.7E-17 3.6E-22 117.7 10.5 132 8-141 17-156 (392)
30 PRK15403 multidrug efflux syst 99.7 2.7E-17 5.8E-22 117.7 10.7 127 12-141 22-148 (413)
31 PRK05122 major facilitator sup 99.7 1.4E-17 3E-22 118.4 9.2 137 3-141 12-156 (399)
32 PF07690 MFS_1: Major Facilita 99.7 2E-17 4.2E-22 115.1 9.8 127 13-142 3-130 (352)
33 TIGR00893 2A0114 d-galactonate 99.7 1.2E-17 2.6E-22 117.4 8.0 123 17-142 5-127 (399)
34 PRK10133 L-fucose transporter; 99.7 3.1E-17 6.7E-22 118.2 10.0 135 4-141 24-161 (438)
35 PLN00028 nitrate transmembrane 99.7 4.7E-17 1E-21 118.3 10.9 133 4-140 34-166 (476)
36 TIGR00903 2A0129 major facilit 99.7 1.6E-17 3.5E-22 117.2 8.2 117 22-142 7-123 (368)
37 TIGR00886 2A0108 nitrite extru 99.7 4.1E-17 8.9E-22 114.5 9.9 126 11-140 6-133 (366)
38 TIGR00881 2A0104 phosphoglycer 99.7 1.2E-17 2.6E-22 117.1 6.8 125 15-142 4-128 (379)
39 cd06174 MFS The Major Facilita 99.7 5.5E-17 1.2E-21 112.5 9.9 129 11-142 4-132 (352)
40 PRK11652 emrD multidrug resist 99.7 7.1E-17 1.5E-21 114.6 10.7 135 3-140 5-139 (394)
41 TIGR00885 fucP L-fucose:H+ sym 99.7 4.9E-17 1.1E-21 116.2 9.9 133 7-142 4-139 (410)
42 TIGR00879 SP MFS transporter, 99.7 3.5E-17 7.5E-22 117.8 8.7 134 6-142 28-172 (481)
43 TIGR00900 2A0121 H+ Antiporter 99.7 3.5E-17 7.7E-22 114.3 8.3 127 13-142 6-137 (365)
44 PRK11273 glpT sn-glycerol-3-ph 99.7 5.7E-17 1.2E-21 117.1 9.5 126 13-142 36-165 (452)
45 PRK09952 shikimate transporter 99.7 6E-17 1.3E-21 116.7 9.5 135 4-141 20-169 (438)
46 PRK10054 putative transporter; 99.7 1.3E-16 2.8E-21 113.6 9.6 132 9-142 10-141 (395)
47 PRK10473 multidrug efflux syst 99.7 1.9E-16 4.1E-21 112.4 10.2 119 20-141 17-135 (392)
48 TIGR00894 2A0114euk Na(+)-depe 99.7 3.4E-16 7.4E-21 113.4 11.6 140 3-142 16-176 (465)
49 KOG0254|consensus 99.7 2.5E-16 5.4E-21 115.5 10.9 138 5-142 44-187 (513)
50 PRK15034 nitrate/nitrite trans 99.7 3.9E-16 8.5E-21 112.4 11.4 132 6-140 34-170 (462)
51 TIGR00806 rfc RFC reduced fola 99.7 2.2E-16 4.8E-21 113.0 9.9 115 23-141 43-158 (511)
52 PRK11102 bicyclomycin/multidru 99.7 1.5E-16 3.3E-21 112.1 8.4 118 21-141 6-123 (377)
53 COG2271 UhpC Sugar phosphate p 99.7 2E-16 4.3E-21 110.8 8.4 137 4-143 27-163 (448)
54 PRK11195 lysophospholipid tran 99.7 2.8E-16 6.1E-21 111.8 9.1 125 12-142 9-133 (393)
55 PRK11043 putative transporter; 99.7 4.9E-16 1.1E-20 110.6 10.2 122 14-138 14-135 (401)
56 PRK11646 multidrug resistance 99.7 4.2E-16 9E-21 111.2 9.4 131 10-142 14-144 (400)
57 TIGR00897 2A0118 polyol permea 99.7 5.4E-16 1.2E-20 110.6 9.6 129 10-141 17-149 (402)
58 TIGR00898 2A0119 cation transp 99.7 3.1E-16 6.8E-21 114.5 8.3 112 27-141 110-224 (505)
59 TIGR00924 yjdL_sub1_fam amino 99.6 1.2E-15 2.6E-20 111.0 8.9 138 6-143 10-151 (475)
60 PRK09874 drug efflux system pr 99.6 3.3E-15 7.2E-20 106.2 11.0 130 8-141 16-150 (408)
61 TIGR00712 glpT glycerol-3-phos 99.6 1.4E-15 3E-20 109.5 8.5 130 9-142 30-163 (438)
62 KOG0252|consensus 99.6 8.9E-16 1.9E-20 108.6 6.9 137 2-138 37-185 (538)
63 PRK10207 dipeptide/tripeptide 99.6 1.6E-15 3.4E-20 110.7 8.1 138 3-142 11-152 (489)
64 TIGR00892 2A0113 monocarboxyla 99.6 7E-15 1.5E-19 106.5 10.4 116 23-142 36-152 (455)
65 TIGR00896 CynX cyanate transpo 99.6 5.1E-15 1.1E-19 103.8 8.3 114 23-141 17-130 (355)
66 COG2223 NarK Nitrate/nitrite t 99.6 4.5E-15 9.8E-20 103.9 7.8 135 4-143 12-149 (417)
67 TIGR00805 oat sodium-independe 99.6 1E-15 2.3E-20 114.5 5.0 131 9-142 36-217 (633)
68 PTZ00207 hypothetical protein; 99.6 2.2E-14 4.7E-19 106.0 9.9 134 3-142 25-164 (591)
69 KOG0569|consensus 99.6 2.9E-14 6.2E-19 102.9 9.8 137 6-142 11-161 (485)
70 KOG0255|consensus 99.6 1.2E-14 2.6E-19 106.8 7.8 100 38-137 112-211 (521)
71 PRK10489 enterobactin exporter 99.6 7.8E-15 1.7E-19 105.0 6.2 124 15-141 26-154 (417)
72 TIGR00899 2A0120 sugar efflux 99.6 4E-14 8.6E-19 99.6 9.5 119 13-133 4-123 (375)
73 KOG3764|consensus 99.5 1.1E-14 2.3E-19 101.6 5.5 103 40-142 102-205 (464)
74 PF00083 Sugar_tr: Sugar (and 99.5 2.4E-16 5.2E-21 113.6 -2.9 131 12-142 6-147 (451)
75 TIGR00901 2A0125 AmpG-related 99.5 1E-13 2.2E-18 97.3 10.3 126 15-143 218-355 (356)
76 PRK15462 dipeptide/tripeptide 99.5 5.5E-14 1.2E-18 102.2 9.1 139 3-143 6-148 (493)
77 KOG2615|consensus 99.5 9.6E-14 2.1E-18 96.5 8.6 102 40-142 64-165 (451)
78 PRK11551 putative 3-hydroxyphe 99.5 3.6E-13 7.7E-18 96.0 10.6 116 24-142 238-353 (406)
79 PRK10642 proline/glycine betai 99.5 4.8E-13 1E-17 97.8 10.4 119 20-140 264-385 (490)
80 cd06174 MFS The Major Facilita 99.5 4.9E-13 1.1E-17 92.8 9.5 128 13-142 182-310 (352)
81 TIGR00883 2A0106 metabolite-pr 99.5 9E-14 1.9E-18 98.0 5.9 122 18-141 5-140 (394)
82 TIGR01299 synapt_SV2 synaptic 99.5 5.9E-13 1.3E-17 101.0 10.1 95 48-142 599-693 (742)
83 COG0738 FucP Fucose permease [ 99.5 7.8E-13 1.7E-17 92.5 9.8 136 4-142 11-149 (422)
84 TIGR00891 2A0112 putative sial 99.5 9.7E-13 2.1E-17 93.3 10.5 119 22-142 254-373 (405)
85 KOG2532|consensus 99.5 2.8E-13 6.1E-18 98.1 7.7 104 38-141 67-172 (466)
86 PRK09584 tppB putative tripept 99.4 5.3E-13 1.1E-17 97.8 8.8 132 8-141 23-158 (500)
87 TIGR00880 2_A_01_02 Multidrug 99.4 2E-13 4.4E-18 83.1 5.5 93 50-142 4-96 (141)
88 TIGR00895 2A0115 benzoate tran 99.4 1.4E-12 3.1E-17 92.1 10.2 123 17-142 261-383 (398)
89 PRK08633 2-acyl-glycerophospho 99.4 8.8E-13 1.9E-17 104.5 9.0 100 43-142 46-148 (1146)
90 PRK09556 uhpT sugar phosphate 99.4 2E-12 4.4E-17 94.0 10.1 133 8-142 260-394 (467)
91 TIGR00900 2A0121 H+ Antiporter 99.4 2.2E-12 4.8E-17 90.1 9.8 114 27-142 232-346 (365)
92 TIGR00890 2A0111 Oxalate/Forma 99.4 1.2E-12 2.6E-17 91.7 8.5 112 28-142 227-340 (377)
93 PRK11902 ampG muropeptide tran 99.4 1.4E-12 3.1E-17 93.0 8.9 125 12-141 5-138 (402)
94 PRK11010 ampG muropeptide tran 99.4 1.8E-12 4E-17 94.8 8.9 130 7-141 13-151 (491)
95 PRK15011 sugar efflux transpor 99.4 3.2E-12 7E-17 91.0 9.5 114 25-141 235-348 (393)
96 TIGR00883 2A0106 metabolite-pr 99.4 4.1E-12 9E-17 89.5 9.9 126 12-139 225-354 (394)
97 TIGR00902 2A0127 phenyl propri 99.4 7.4E-12 1.6E-16 88.9 10.7 123 13-139 212-334 (382)
98 PRK15075 citrate-proton sympor 99.4 5.5E-12 1.2E-16 90.9 9.9 120 19-140 251-374 (434)
99 TIGR00901 2A0125 AmpG-related 99.4 2.7E-12 5.8E-17 90.1 7.4 114 23-141 5-127 (356)
100 PRK10406 alpha-ketoglutarate t 99.4 1.1E-11 2.3E-16 89.4 10.6 119 22-142 259-381 (432)
101 PRK09952 shikimate transporter 99.3 1.6E-11 3.4E-16 88.7 10.6 116 23-140 267-386 (438)
102 PF06609 TRI12: Fungal trichot 99.3 2.3E-11 5E-16 90.1 10.4 114 21-139 59-172 (599)
103 PRK05122 major facilitator sup 99.3 2.3E-11 5.1E-16 86.6 9.9 112 25-141 235-346 (399)
104 PRK06814 acylglycerophosphoeth 99.3 1.8E-11 4E-16 97.2 9.8 99 44-142 52-153 (1140)
105 PRK10489 enterobactin exporter 99.3 4E-11 8.6E-16 86.0 10.7 116 25-142 242-357 (417)
106 PRK12382 putative transporter; 99.3 2.2E-11 4.7E-16 86.6 9.3 113 25-142 235-347 (392)
107 TIGR00889 2A0110 nucleoside tr 99.3 1.3E-11 2.9E-16 88.7 8.1 97 43-139 250-350 (418)
108 TIGR00882 2A0105 oligosacchari 99.3 3.1E-11 6.8E-16 85.9 9.8 117 9-127 5-129 (396)
109 TIGR00902 2A0127 phenyl propri 99.3 2E-11 4.4E-16 86.7 8.7 125 11-140 9-135 (382)
110 TIGR00711 efflux_EmrB drug res 99.3 1.8E-11 4E-16 89.0 8.7 118 23-142 272-393 (485)
111 TIGR00899 2A0120 sugar efflux 99.3 3.5E-11 7.6E-16 84.7 9.7 113 27-142 220-332 (375)
112 PRK03893 putative sialic acid 99.3 3.2E-11 6.9E-16 88.1 9.7 115 26-142 295-411 (496)
113 TIGR01301 GPH_sucrose GPH fami 99.3 1.6E-11 3.4E-16 89.2 8.0 130 8-140 6-159 (477)
114 PRK12307 putative sialic acid 99.3 5.7E-11 1.2E-15 85.2 10.6 114 26-142 251-366 (426)
115 KOG2533|consensus 99.3 1.2E-10 2.6E-15 85.0 11.6 106 37-142 74-179 (495)
116 KOG2504|consensus 99.3 2.4E-11 5.2E-16 89.1 7.9 115 23-141 63-178 (509)
117 PRK09528 lacY galactoside perm 99.3 4.7E-11 1E-15 85.7 9.2 99 39-137 257-355 (420)
118 PRK14995 methyl viologen resis 99.3 4E-11 8.6E-16 87.9 8.8 117 24-142 277-396 (495)
119 PRK15011 sugar efflux transpor 99.3 7.3E-11 1.6E-15 84.1 9.9 120 9-131 18-139 (393)
120 PRK11128 putative 3-phenylprop 99.2 5.4E-11 1.2E-15 84.4 8.7 118 15-139 13-134 (382)
121 PRK03699 putative transporter; 99.2 9.5E-11 2.1E-15 83.5 9.7 125 12-139 211-335 (394)
122 PRK11128 putative 3-phenylprop 99.2 1.2E-10 2.6E-15 82.7 10.2 111 25-139 224-334 (382)
123 TIGR00893 2A0114 d-galactonate 99.2 6E-11 1.3E-15 83.4 8.6 131 9-142 218-356 (399)
124 PF05977 MFS_3: Transmembrane 99.2 1.3E-10 2.9E-15 85.5 9.7 116 24-141 236-351 (524)
125 PF11700 ATG22: Vacuole efflux 99.2 2.5E-10 5.5E-15 83.2 10.7 136 5-142 280-425 (477)
126 PRK09528 lacY galactoside perm 99.2 1E-10 2.3E-15 83.9 8.6 79 7-87 11-89 (420)
127 PRK09874 drug efflux system pr 99.2 1E-10 2.2E-15 83.3 8.5 96 46-141 260-355 (408)
128 TIGR00889 2A0110 nucleoside tr 99.2 1.3E-10 2.9E-15 83.6 9.1 108 11-120 7-115 (418)
129 PRK08633 2-acyl-glycerophospho 99.2 9.7E-11 2.1E-15 93.1 8.7 116 25-142 251-367 (1146)
130 TIGR00887 2A0109 phosphate:H+ 99.2 2.2E-10 4.7E-15 84.2 10.0 121 19-142 301-437 (502)
131 PRK10504 putative transporter; 99.2 1.7E-10 3.6E-15 83.9 9.0 117 23-141 278-397 (471)
132 TIGR00879 SP MFS transporter, 99.2 2.3E-10 5E-15 82.5 9.4 117 23-142 301-428 (481)
133 PF05977 MFS_3: Transmembrane 99.2 1.8E-10 3.9E-15 84.8 8.9 114 27-143 31-149 (524)
134 TIGR00897 2A0118 polyol permea 99.2 3E-10 6.6E-15 81.2 9.8 123 15-142 231-359 (402)
135 TIGR00892 2A0113 monocarboxyla 99.2 2.3E-10 5E-15 83.1 9.3 124 16-142 251-378 (455)
136 PRK10077 xylE D-xylose transpo 99.2 2.7E-10 5.9E-15 82.9 9.3 112 27-141 292-408 (479)
137 PF07690 MFS_1: Major Facilita 99.2 5.9E-11 1.3E-15 82.6 5.3 120 21-142 221-344 (352)
138 PRK09705 cynX putative cyanate 99.1 4.6E-10 1E-14 80.1 9.4 124 14-142 213-338 (393)
139 PRK03545 putative arabinose tr 99.1 5.5E-10 1.2E-14 79.5 9.8 110 28-141 227-337 (390)
140 TIGR00896 CynX cyanate transpo 99.1 7E-10 1.5E-14 77.9 10.1 115 23-141 214-330 (355)
141 PRK03633 putative MFS family t 99.1 5E-10 1.1E-14 79.5 9.2 107 26-138 220-326 (381)
142 TIGR02332 HpaX 4-hydroxyphenyl 99.1 4.8E-10 1E-14 80.5 9.2 130 11-143 247-379 (412)
143 TIGR00792 gph sugar (Glycoside 99.1 5.5E-11 1.2E-15 85.5 3.7 122 18-141 11-144 (437)
144 TIGR00792 gph sugar (Glycoside 99.1 1.6E-09 3.4E-14 78.0 11.0 100 42-141 255-362 (437)
145 TIGR00710 efflux_Bcr_CflA drug 99.1 1.2E-09 2.5E-14 77.2 10.2 113 26-141 226-343 (385)
146 TIGR00886 2A0108 nitrite extru 99.1 4.3E-10 9.2E-15 79.0 7.5 117 24-143 243-363 (366)
147 PRK11273 glpT sn-glycerol-3-ph 99.1 1.1E-09 2.5E-14 79.4 9.9 130 10-141 257-391 (452)
148 TIGR00903 2A0129 major facilit 99.1 9.7E-10 2.1E-14 77.9 8.9 128 9-143 195-326 (368)
149 TIGR00881 2A0104 phosphoglycer 99.1 1.2E-09 2.7E-14 76.6 9.1 130 11-142 221-355 (379)
150 TIGR00898 2A0119 cation transp 99.1 2.6E-09 5.7E-14 78.3 11.0 93 50-142 361-455 (505)
151 PRK06814 acylglycerophosphoeth 99.1 5.2E-10 1.1E-14 89.1 7.5 123 18-142 237-379 (1140)
152 PRK15402 multidrug efflux syst 99.0 2.1E-09 4.6E-14 76.8 9.0 112 27-141 236-352 (406)
153 TIGR00882 2A0105 oligosacchari 99.0 4.8E-09 1E-13 74.8 10.8 98 40-137 250-347 (396)
154 KOG2325|consensus 99.0 2.5E-09 5.4E-14 77.4 9.0 137 2-140 30-172 (488)
155 PRK11646 multidrug resistance 99.0 3.9E-09 8.5E-14 75.5 10.0 112 27-141 229-341 (400)
156 COG2271 UhpC Sugar phosphate p 99.0 4.6E-09 1E-13 74.4 9.8 135 6-142 252-391 (448)
157 COG2270 Permeases of the major 99.0 2.5E-09 5.4E-14 75.7 8.5 105 38-142 282-386 (438)
158 PRK11195 lysophospholipid tran 99.0 4.9E-09 1.1E-13 74.9 10.0 104 38-142 235-339 (393)
159 COG2807 CynX Cyanate permease 99.0 5.5E-09 1.2E-13 72.7 9.7 117 20-141 26-142 (395)
160 KOG0253|consensus 99.0 5.8E-10 1.3E-14 78.0 4.8 130 5-138 77-206 (528)
161 PF03825 Nuc_H_symport: Nucleo 99.0 5.5E-09 1.2E-13 74.8 9.6 114 12-128 8-122 (400)
162 PRK11663 regulatory protein Uh 99.0 5.1E-09 1.1E-13 75.7 9.5 130 11-142 248-382 (434)
163 PRK09848 glucuronide transport 99.0 1.3E-08 2.8E-13 73.8 11.2 116 24-141 246-370 (448)
164 TIGR00712 glpT glycerol-3-phos 99.0 5.7E-09 1.2E-13 75.5 9.3 117 23-141 268-389 (438)
165 PF06813 Nodulin-like: Nodulin 99.0 8.1E-09 1.8E-13 69.3 9.0 116 21-141 17-139 (250)
166 TIGR02718 sider_RhtX_FptX side 99.0 7.7E-09 1.7E-13 73.6 9.4 112 27-141 229-348 (390)
167 TIGR01272 gluP glucose/galacto 99.0 1.4E-08 3.1E-13 70.4 10.5 120 9-129 143-262 (310)
168 PF05631 DUF791: Protein of un 98.9 1.3E-08 2.8E-13 70.9 9.9 97 25-125 53-150 (354)
169 PLN00028 nitrate transmembrane 98.9 3.5E-09 7.5E-14 77.5 7.5 115 25-142 271-392 (476)
170 COG2223 NarK Nitrate/nitrite t 98.9 2.7E-09 5.9E-14 75.4 6.2 129 7-142 219-358 (417)
171 PRK11102 bicyclomycin/multidru 98.9 1.8E-08 4E-13 71.2 10.2 111 27-140 215-329 (377)
172 COG3104 PTR2 Dipeptide/tripept 98.9 5.8E-09 1.3E-13 75.2 7.3 139 5-143 20-165 (498)
173 PRK10213 nepI ribonucleoside t 98.9 2.1E-08 4.5E-13 71.7 10.1 105 29-137 240-344 (394)
174 COG2814 AraJ Arabinose efflux 98.9 1.7E-08 3.7E-13 71.5 9.4 116 23-143 229-345 (394)
175 PRK10429 melibiose:sodium symp 98.9 2.2E-09 4.7E-14 78.4 5.1 129 8-138 8-148 (473)
176 PF13347 MFS_2: MFS/sugar tran 98.9 6.6E-09 1.4E-13 74.9 7.3 115 12-129 231-347 (428)
177 PF12832 MFS_1_like: MFS_1 lik 98.9 8.4E-09 1.8E-13 56.9 5.9 69 12-83 6-74 (77)
178 PRK09669 putative symporter Ya 98.9 2.9E-09 6.2E-14 77.1 5.1 129 10-140 13-153 (444)
179 PRK10054 putative transporter; 98.9 1.3E-08 2.8E-13 72.8 8.2 102 38-139 238-340 (395)
180 KOG0569|consensus 98.9 3.6E-08 7.8E-13 71.8 10.5 114 25-141 289-412 (485)
181 PRK11010 ampG muropeptide tran 98.9 3.9E-08 8.5E-13 72.3 10.8 104 38-141 252-360 (491)
182 PRK10133 L-fucose transporter; 98.9 3.4E-08 7.5E-13 71.6 10.2 99 38-138 289-387 (438)
183 PRK11043 putative transporter; 98.8 5.5E-08 1.2E-12 69.5 10.5 111 27-141 224-339 (401)
184 PF06779 DUF1228: Protein of u 98.8 1.3E-08 2.9E-13 56.8 5.5 80 18-100 4-83 (85)
185 PRK10429 melibiose:sodium symp 98.8 8.6E-08 1.9E-12 70.1 11.2 87 42-128 264-355 (473)
186 PRK15034 nitrate/nitrite trans 98.8 4.6E-08 9.9E-13 71.1 8.5 115 10-128 256-376 (462)
187 PF03825 Nuc_H_symport: Nucleo 98.8 9.7E-08 2.1E-12 68.5 9.5 127 12-141 213-345 (400)
188 TIGR02718 sider_RhtX_FptX side 98.8 6E-08 1.3E-12 69.1 8.4 129 8-139 3-139 (390)
189 COG0477 ProP Permeases of the 98.8 1E-07 2.2E-12 64.4 9.2 118 20-140 16-138 (338)
190 TIGR00788 fbt folate/biopterin 98.7 1.5E-07 3.2E-12 68.9 9.5 122 9-135 29-157 (468)
191 PRK10091 MFS transport protein 98.7 2.1E-07 4.5E-12 66.2 9.7 97 38-134 229-327 (382)
192 PRK11902 ampG muropeptide tran 98.7 2.5E-07 5.5E-12 66.2 10.2 100 38-137 239-347 (402)
193 KOG0253|consensus 98.7 1.6E-08 3.6E-13 70.9 3.7 91 52-142 389-479 (528)
194 KOG2563|consensus 98.7 1.4E-07 3E-12 67.6 7.5 136 2-141 41-184 (480)
195 PRK10473 multidrug efflux syst 98.6 3.9E-07 8.3E-12 64.9 9.8 100 29-132 226-325 (392)
196 PRK09848 glucuronide transport 98.6 6.9E-08 1.5E-12 70.0 6.0 129 9-139 11-152 (448)
197 PRK09584 tppB putative tripept 98.6 4.8E-07 1E-11 66.7 10.4 94 46-139 318-424 (500)
198 PRK09669 putative symporter Ya 98.6 5.6E-07 1.2E-11 65.3 10.6 84 45-128 265-350 (444)
199 TIGR00894 2A0114euk Na(+)-depe 98.6 2.2E-07 4.8E-12 67.7 8.5 132 8-142 263-405 (465)
200 COG2211 MelB Na+/melibiose sym 98.6 6E-07 1.3E-11 65.1 10.4 105 22-128 252-358 (467)
201 KOG2504|consensus 98.6 3.3E-07 7.1E-12 67.7 8.8 128 11-141 303-432 (509)
202 TIGR00924 yjdL_sub1_fam amino 98.6 4.6E-07 9.9E-12 66.5 9.5 96 46-141 314-425 (475)
203 COG2807 CynX Cyanate permease 98.6 4.8E-07 1E-11 63.3 8.6 130 9-142 211-342 (395)
204 PRK11462 putative transporter; 98.6 1.7E-07 3.6E-12 68.5 6.6 131 10-142 13-155 (460)
205 PF01306 LacY_symp: LacY proto 98.6 6.6E-07 1.4E-11 64.1 9.1 101 38-138 253-353 (412)
206 KOG4686|consensus 98.6 5E-09 1.1E-13 71.3 -1.5 135 4-141 42-180 (459)
207 KOG4686|consensus 98.6 5.4E-07 1.2E-11 61.6 8.1 132 5-143 266-398 (459)
208 KOG0254|consensus 98.6 1.3E-06 2.8E-11 64.7 10.8 128 10-141 299-439 (513)
209 TIGR00885 fucP L-fucose:H+ sym 98.5 1.5E-06 3.2E-11 62.7 10.3 117 14-132 240-356 (410)
210 PF05978 UNC-93: Ion channel r 98.5 3.1E-06 6.7E-11 53.0 10.0 92 48-140 41-132 (156)
211 PF13347 MFS_2: MFS/sugar tran 98.5 2.6E-08 5.7E-13 71.8 0.7 113 27-141 22-148 (428)
212 PRK10207 dipeptide/tripeptide 98.5 2.1E-06 4.5E-11 63.3 10.1 95 47-141 312-423 (489)
213 PRK11652 emrD multidrug resist 98.5 2.5E-06 5.3E-11 60.9 9.8 110 29-141 230-342 (394)
214 PF01306 LacY_symp: LacY proto 98.4 2.6E-07 5.6E-12 66.2 4.4 117 7-125 8-132 (412)
215 PRK11462 putative transporter; 98.4 1.7E-05 3.7E-10 58.1 12.0 84 44-127 263-348 (460)
216 TIGR00788 fbt folate/biopterin 98.3 1.5E-06 3.2E-11 63.7 5.5 106 38-143 282-397 (468)
217 PF03209 PUCC: PUCC protein; 98.2 7E-05 1.5E-09 53.5 12.2 103 38-140 238-344 (403)
218 COG2211 MelB Na+/melibiose sym 98.2 3.9E-06 8.5E-11 61.0 5.0 135 6-142 12-158 (467)
219 KOG3762|consensus 98.1 4.2E-06 9.2E-11 61.4 4.9 115 23-140 388-502 (618)
220 COG0738 FucP Fucose permease [ 98.1 6.4E-05 1.4E-09 53.6 9.9 119 8-129 238-356 (422)
221 PF00083 Sugar_tr: Sugar (and 98.1 2.8E-08 6.2E-13 71.9 -7.0 113 25-142 272-394 (451)
222 PRK15403 multidrug efflux syst 98.0 0.00012 2.6E-09 52.8 10.1 115 23-140 235-354 (413)
223 PRK15462 dipeptide/tripeptide 98.0 0.00011 2.4E-09 54.3 9.6 96 45-140 309-420 (493)
224 PF06609 TRI12: Fungal trichot 97.9 4.8E-05 1E-09 57.2 7.5 131 9-141 313-449 (599)
225 PF03209 PUCC: PUCC protein; 97.9 7.4E-05 1.6E-09 53.4 7.4 103 38-141 9-133 (403)
226 KOG2533|consensus 97.9 9.3E-05 2E-09 54.7 7.5 126 6-133 273-403 (495)
227 KOG0637|consensus 97.8 4.2E-05 9.2E-10 55.3 4.9 133 6-141 32-187 (498)
228 TIGR00926 2A1704 Peptide:H+ sy 97.8 0.00011 2.4E-09 56.1 7.3 105 38-142 17-133 (654)
229 TIGR01301 GPH_sucrose GPH fami 97.8 0.00093 2E-08 49.3 11.7 96 47-142 308-427 (477)
230 COG2270 Permeases of the major 97.8 0.0002 4.2E-09 51.5 7.5 119 23-141 32-159 (438)
231 PF03137 OATP: Organic Anion T 97.7 6E-06 1.3E-10 61.5 -0.2 130 10-142 7-186 (539)
232 PF11700 ATG22: Vacuole efflux 97.7 0.00033 7.1E-09 51.7 8.7 86 46-131 72-160 (477)
233 KOG2532|consensus 97.7 0.00012 2.6E-09 53.8 5.9 66 6-73 258-323 (466)
234 KOG3762|consensus 97.7 2.7E-05 5.9E-10 57.4 2.5 70 14-86 19-88 (618)
235 KOG0252|consensus 97.7 8.3E-06 1.8E-10 59.0 -0.4 134 6-142 304-451 (538)
236 PF06963 FPN1: Ferroportin1 (F 97.6 0.0013 2.8E-08 47.9 10.0 114 25-141 277-400 (432)
237 KOG2816|consensus 97.6 0.00065 1.4E-08 49.9 8.1 84 52-140 70-155 (463)
238 KOG2816|consensus 97.5 0.0019 4.2E-08 47.5 10.3 110 29-141 264-374 (463)
239 KOG3764|consensus 97.4 0.00019 4.1E-09 51.4 3.9 114 17-132 281-396 (464)
240 KOG0255|consensus 97.3 0.0059 1.3E-07 45.4 10.5 88 54-141 360-450 (521)
241 KOG4332|consensus 97.2 0.0002 4.2E-09 49.1 1.7 88 38-126 66-154 (454)
242 PTZ00207 hypothetical protein; 97.2 0.0033 7.1E-08 47.7 8.1 87 49-137 396-491 (591)
243 KOG3098|consensus 97.1 0.0019 4.2E-08 47.3 6.0 91 50-141 56-146 (461)
244 PF01770 Folate_carrier: Reduc 97.0 0.032 7E-07 40.5 11.6 111 25-137 22-133 (412)
245 KOG2615|consensus 96.9 0.0057 1.2E-07 43.9 6.9 105 38-142 291-397 (451)
246 TIGR00805 oat sodium-independe 96.8 0.0017 3.7E-08 49.7 4.1 77 10-88 334-413 (633)
247 TIGR00769 AAA ADP/ATP carrier 96.6 0.076 1.6E-06 39.4 11.1 138 4-143 5-175 (472)
248 COG3104 PTR2 Dipeptide/tripept 96.6 0.056 1.2E-06 40.1 10.0 97 45-141 325-438 (498)
249 PF03092 BT1: BT1 family; Int 96.5 0.015 3.3E-07 42.6 7.1 105 29-137 13-128 (433)
250 KOG3098|consensus 96.2 0.13 2.8E-06 38.1 10.0 127 10-137 244-392 (461)
251 KOG1330|consensus 96.0 0.02 4.4E-07 42.0 5.1 101 40-140 279-392 (493)
252 KOG3626|consensus 95.9 0.0059 1.3E-07 47.1 2.4 132 8-142 99-282 (735)
253 TIGR01272 gluP glucose/galacto 95.8 0.015 3.2E-07 40.6 3.9 52 92-143 5-56 (310)
254 KOG3574|consensus 95.8 0.12 2.6E-06 37.5 8.2 127 4-137 29-173 (510)
255 PF02487 CLN3: CLN3 protein; 95.2 0.28 6.1E-06 35.7 8.6 96 42-141 279-379 (402)
256 KOG2563|consensus 95.0 0.024 5.3E-07 41.5 2.8 94 38-131 295-394 (480)
257 KOG1237|consensus 94.0 0.52 1.1E-05 36.1 8.0 90 38-127 67-182 (571)
258 PF01770 Folate_carrier: Reduc 93.8 2 4.3E-05 31.6 10.7 97 45-141 286-384 (412)
259 TIGR00939 2a57 Equilibrative N 93.2 1.7 3.7E-05 32.1 9.4 96 45-141 308-416 (437)
260 TIGR00806 rfc RFC reduced fola 92.1 2.3 5.1E-05 32.1 8.7 96 46-141 300-397 (511)
261 PF03137 OATP: Organic Anion T 90.7 0.074 1.6E-06 40.2 0.0 73 9-83 308-383 (539)
262 TIGR00880 2_A_01_02 Multidrug 90.3 1.4 3E-05 25.9 5.5 38 45-82 88-125 (141)
263 PF00854 PTR2: POT family; In 89.7 0.57 1.2E-05 33.5 3.9 67 75-141 2-80 (372)
264 KOG3626|consensus 89.7 0.5 1.1E-05 37.1 3.7 62 9-72 395-457 (735)
265 PF03092 BT1: BT1 family; Int 89.5 1.2 2.5E-05 32.9 5.3 103 41-143 252-364 (433)
266 KOG4332|consensus 89.1 6.2 0.00013 27.9 10.6 119 15-138 258-385 (454)
267 PF02487 CLN3: CLN3 protein; 89.0 4.4 9.5E-05 29.8 7.8 82 47-129 62-143 (402)
268 KOG0637|consensus 87.4 3.6 7.9E-05 30.8 6.6 77 47-123 335-411 (498)
269 KOG3810|consensus 84.6 3.6 7.8E-05 29.9 5.3 95 47-141 274-370 (433)
270 PF01733 Nucleoside_tran: Nucl 84.6 0.38 8.2E-06 33.7 0.5 94 48-141 186-292 (309)
271 PF13000 Acatn: Acetyl-coenzym 83.9 3 6.6E-05 31.6 4.8 68 9-79 3-75 (544)
272 PF11947 DUF3464: Protein of u 82.1 5.5 0.00012 25.1 4.8 72 66-141 56-138 (153)
273 COG1268 BioY Uncharacterized c 77.8 15 0.00032 23.9 6.0 26 51-76 89-114 (184)
274 KOG1479|consensus 77.7 21 0.00046 26.4 7.3 114 25-140 262-386 (406)
275 PRK03612 spermidine synthase; 77.7 29 0.00063 26.5 10.1 33 38-70 44-76 (521)
276 KOG3097|consensus 74.6 6.7 0.00015 28.3 4.0 73 54-127 68-140 (390)
277 PF02694 UPF0060: Uncharacteri 72.3 7.6 0.00017 22.8 3.3 48 44-91 54-101 (107)
278 PF02632 BioY: BioY family; I 68.8 26 0.00056 21.9 6.8 40 50-89 59-98 (148)
279 PRK02237 hypothetical protein; 68.5 16 0.00034 21.6 4.0 49 44-92 56-104 (109)
280 PF03219 TLC: TLC ATP/ADP tran 68.3 51 0.0011 25.1 10.9 83 5-91 23-106 (491)
281 COG5336 Uncharacterized protei 68.2 14 0.00031 21.8 3.8 22 50-71 48-69 (116)
282 PF06963 FPN1: Ferroportin1 (F 67.6 23 0.0005 26.4 5.7 72 12-86 8-80 (432)
283 KOG3880|consensus 61.7 34 0.00073 24.8 5.3 49 92-140 337-385 (409)
284 PLN02878 homogentisate phytylt 57.1 65 0.0014 22.6 6.1 71 71-142 196-266 (280)
285 KOG3810|consensus 55.8 22 0.00047 26.1 3.6 100 38-138 35-135 (433)
286 PF07672 MFS_Mycoplasma: Mycop 52.9 76 0.0017 22.1 5.9 91 47-137 144-246 (267)
287 KOG4830|consensus 52.8 4.6 0.0001 28.2 0.0 53 22-77 33-94 (412)
288 COG2119 Predicted membrane pro 52.0 61 0.0013 21.2 4.9 36 53-88 143-178 (190)
289 COG3202 ATP/ADP translocase [E 48.1 1.3E+02 0.0027 23.2 7.3 82 7-92 28-110 (509)
290 COG2233 UraA Xanthine/uracil p 46.9 1.3E+02 0.0027 22.9 9.8 107 25-133 32-141 (451)
291 PF05232 BTP: Bacterial Transm 43.7 29 0.00062 18.5 2.2 37 38-74 28-64 (67)
292 PF04550 Phage_holin_2: Phage 43.2 44 0.00095 18.9 2.9 36 98-133 32-67 (89)
293 TIGR03173 pbuX xanthine permea 42.9 1.3E+02 0.0029 22.1 7.3 95 38-133 22-117 (406)
294 COG2076 EmrE Membrane transpor 42.1 73 0.0016 18.8 7.5 68 61-128 17-85 (106)
295 PRK12887 ubiA tocopherol phyty 41.6 1.3E+02 0.0028 21.4 6.2 22 121-142 271-292 (308)
296 KOG3880|consensus 39.6 24 0.00051 25.5 1.8 70 46-115 64-133 (409)
297 COG1230 CzcD Co/Zn/Cd efflux s 38.3 88 0.0019 22.2 4.4 77 3-88 22-101 (296)
298 KOG2325|consensus 37.4 39 0.00084 25.8 2.8 39 104-142 395-433 (488)
299 PF13493 DUF4118: Domain of un 36.9 49 0.0011 18.8 2.7 23 52-74 83-105 (105)
300 PF03219 TLC: TLC ATP/ADP tran 36.7 1.9E+02 0.0042 22.1 6.3 41 46-86 321-361 (491)
301 COG4769 Predicted membrane pro 36.4 1.2E+02 0.0025 19.6 4.3 22 57-78 86-107 (181)
302 PF09527 ATPase_gene1: Putativ 36.3 60 0.0013 16.2 5.3 27 52-78 8-35 (55)
303 PF10785 NADH-u_ox-rdase: NADH 36.0 83 0.0018 17.7 4.8 41 56-96 30-77 (86)
304 TIGR00769 AAA ADP/ATP carrier 35.6 2E+02 0.0043 22.0 6.1 41 46-86 305-345 (472)
305 COG1009 NuoL NADH:ubiquinone o 33.9 2.2E+02 0.0048 22.6 6.3 69 41-110 72-140 (606)
306 TIGR01667 YCCS_YHJK integral m 33.9 1.5E+02 0.0032 24.0 5.5 47 65-111 44-95 (701)
307 TIGR00939 2a57 Equilibrative N 33.5 2.1E+02 0.0045 21.5 7.0 81 50-131 51-139 (437)
308 PF04474 DUF554: Protein of un 32.9 1.5E+02 0.0032 20.2 4.7 57 53-110 11-67 (226)
309 TIGR01666 YCCS hypothetical me 31.7 1.7E+02 0.0037 23.6 5.5 44 65-108 44-92 (704)
310 COG1811 Uncharacterized membra 31.7 1.5E+02 0.0033 20.1 4.4 50 54-103 13-62 (228)
311 KOG2601|consensus 31.3 96 0.0021 23.3 3.8 68 13-83 34-102 (503)
312 KOG2601|consensus 31.0 94 0.002 23.3 3.7 33 109-141 398-430 (503)
313 PF00860 Xan_ur_permease: Perm 30.9 1.7E+02 0.0036 21.5 5.1 100 29-134 21-127 (389)
314 PF00854 PTR2: POT family; In 28.3 99 0.0021 22.2 3.6 47 47-93 75-121 (372)
315 PF12670 DUF3792: Protein of u 28.0 1.4E+02 0.003 17.7 7.7 35 52-86 42-76 (116)
316 TIGR02230 ATPase_gene1 F0F1-AT 27.9 1.3E+02 0.0029 17.5 5.8 23 56-78 54-77 (100)
317 PF11299 DUF3100: Protein of u 27.9 53 0.0012 22.4 2.0 25 105-129 179-203 (241)
318 TIGR03802 Asp_Ala_antiprt aspa 27.7 3E+02 0.0065 21.6 6.1 92 45-139 451-544 (562)
319 PRK10692 hypothetical protein; 27.6 1.3E+02 0.0027 17.1 3.7 41 73-113 3-54 (92)
320 COG1742 Uncharacterized conser 27.0 43 0.00092 19.7 1.2 44 44-87 55-98 (109)
321 PF09605 Trep_Strep: Hypotheti 26.6 1.9E+02 0.0041 18.8 6.7 38 52-89 36-73 (186)
322 KOG1479|consensus 25.2 3E+02 0.0065 20.7 8.7 50 21-70 33-82 (406)
323 PF13000 Acatn: Acetyl-coenzym 24.2 3.5E+02 0.0077 21.2 8.8 42 103-144 411-452 (544)
324 KOG3574|consensus 24.2 3.3E+02 0.0071 20.8 6.0 106 38-143 294-415 (510)
325 PF04117 Mpv17_PMP22: Mpv17 / 23.3 53 0.0011 17.2 1.1 29 115-143 31-59 (68)
326 PF10762 DUF2583: Protein of u 23.3 1.5E+02 0.0033 16.7 3.2 41 73-113 3-54 (89)
327 COG5547 Small integral membran 23.1 1.3E+02 0.0027 15.6 4.1 20 74-93 8-27 (62)
328 TIGR00801 ncs2 uracil-xanthine 22.6 3.3E+02 0.0071 20.3 7.9 101 29-133 25-130 (415)
329 PF06341 DUF1056: Protein of u 22.3 1.4E+02 0.003 15.8 4.5 35 97-132 28-62 (63)
330 PF05631 DUF791: Protein of un 22.1 3.3E+02 0.0071 20.0 7.6 51 16-71 255-305 (354)
331 COG2610 GntT H+/gluconate symp 22.1 3.6E+02 0.0078 20.5 7.0 42 45-86 58-108 (442)
332 PF01148 CTP_transf_1: Cytidyl 22.1 2.5E+02 0.0055 18.7 5.3 16 68-83 158-173 (259)
333 PF02659 DUF204: Domain of unk 22.0 1.3E+02 0.0029 15.5 4.3 24 57-80 37-60 (67)
334 PF08080 zf-RNPHF: RNPHF zinc 21.9 30 0.00065 15.8 0.0 10 68-77 3-12 (36)
335 COG4890 Predicted outer membra 21.6 87 0.0019 14.2 1.4 26 107-132 8-33 (37)
336 PRK10907 intramembrane serine 21.5 3E+02 0.0065 19.3 5.0 35 58-92 155-190 (276)
337 PF06912 DUF1275: Protein of u 21.4 2.5E+02 0.0054 18.4 7.5 17 51-67 53-69 (209)
338 PF07178 TraL: TraL protein; 20.7 1.8E+02 0.0039 16.5 3.2 33 29-61 5-38 (95)
339 PF12173 BacteriocIIc_cy: Bact 20.5 30 0.00065 19.2 -0.2 37 38-74 8-44 (91)
340 PF11298 DUF3099: Protein of u 20.2 1.7E+02 0.0037 16.0 4.2 30 67-96 10-39 (73)
No 1
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.85 E-value=8.4e-21 Score=135.60 Aligned_cols=137 Identities=12% Similarity=0.027 Sum_probs=126.4
Q ss_pred cchhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhc
Q psy6141 2 KSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTG 81 (144)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~ 81 (144)
|++|+....+.+..+.+.++........|.+.+ +++.++++.+++.+.+.++..+++++.|++.||+|||+.+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~ 80 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGK---DLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIM 80 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHh---hcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHH
Confidence 446778888888888889999999988998777 99999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 82 LPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
++..++.....+++|++.+++.|++.|++.+...+....+++|++|+++|+++.++.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~ 140 (412)
T TIGR02332 81 VLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIA 140 (412)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888888999999999999999888754
No 2
>PRK03545 putative arabinose transporter; Provisional
Probab=99.83 E-value=6.7e-20 Score=129.93 Aligned_cols=137 Identities=16% Similarity=0.100 Sum_probs=119.9
Q ss_pred cchhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhc
Q psy6141 2 KSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTG 81 (144)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~ 81 (144)
++++...+.+.+..+..........+..|.+.+ ++|.++++.++..+.+.++..+++++.|++.||+||||.+..+.
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 81 (390)
T PRK03545 5 KVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQ---SFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLF 81 (390)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHcchHHHHh---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 456666666677666655555555567888887 89999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 82 LPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
+...++...+.+++|++.+++.|+++|++.+...+....++.|++|+|+|+++.++.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~ 141 (390)
T PRK03545 82 VLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATG 141 (390)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHH
Confidence 999999999999999999999999999999888888899999999999999999887654
No 3
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.82 E-value=1.4e-19 Score=128.13 Aligned_cols=138 Identities=19% Similarity=0.152 Sum_probs=127.1
Q ss_pred cchhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhc
Q psy6141 2 KSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTG 81 (144)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~ 81 (144)
+++++......++.+.+.++.....+..|.+.+ +++.++++.+++.+...++..++.++.|+++||+|||+.+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~ 84 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAG---EFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSI 84 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 456777788888899999999999999999888 89999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 82 LPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
+...++.....+.++++.+++.|++.|++.+...+....++.|++|+++|+++.++.+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 145 (405)
T TIGR00891 85 VLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGY 145 (405)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHH
Confidence 9999999888899999999999999999999999999999999999999999998876543
No 4
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.81 E-value=1.8e-19 Score=135.81 Aligned_cols=136 Identities=19% Similarity=0.216 Sum_probs=123.0
Q ss_pred chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch
Q psy6141 3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL 82 (144)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~ 82 (144)
++|.....++++.+..+++...+...+|.+.+ +++.+..+.+++.+...++.+++.+++|+++||+|||+.++++.+
T Consensus 164 ~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~---~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~li 240 (742)
T TIGR01299 164 FQWALFFVLGLALMADGVEVFVVGFVLPSAEK---DLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS 240 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 45666677777778888888888888998887 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 83 PFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
+..++.++..++++++.+++.|++.|++.|+..+....+++|++|+++|++..++.+.+
T Consensus 241 l~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~ 299 (742)
T TIGR01299 241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMF 299 (742)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 99999988899999999999999999999999999999999999999999988776544
No 5
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.81 E-value=2.5e-19 Score=130.72 Aligned_cols=139 Identities=17% Similarity=0.162 Sum_probs=126.6
Q ss_pred CcchhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhh
Q psy6141 1 MKSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILST 80 (144)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~ 80 (144)
+.|++.....+++..+....+.......+|.+.+ ++|.+.++.+|+.+.+.++...+.++.|+++||+|||+.++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~---~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~ 77 (495)
T PRK14995 1 MFRQWLTLVIIVLVYIPVAIDATVLHVAAPTLSM---TLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLG 77 (495)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3567888899999999999999999999999988 8999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhcc-Ccchhhhhchhhhhhc
Q psy6141 81 GLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETV-QPEVRGTLGLLPTFLG 142 (144)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~ 142 (144)
.+...++.+.+..++|++.++++|.++|++.+...+.....+.+.+ |+++|+++.++.....
T Consensus 78 ~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~ 140 (495)
T PRK14995 78 GTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVG 140 (495)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988887777776765 6789999988876543
No 6
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.81 E-value=3.4e-19 Score=127.48 Aligned_cols=137 Identities=18% Similarity=0.206 Sum_probs=124.0
Q ss_pred chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch
Q psy6141 3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL 82 (144)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~ 82 (144)
.++.......+..+..+++.....+..|.+.+ +++.++.+.++..+...++..+++++.|+++||+|||+.+..+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~ 91 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKA---DLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIV 91 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 34555667777778888888888888898887 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 83 PFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
...++.....++++++.+++.|++.|++.+...+....++.|.+|+|+|+++.++.+...
T Consensus 92 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 151 (426)
T PRK12307 92 AYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGF 151 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988876543
No 7
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.80 E-value=5.7e-19 Score=123.72 Aligned_cols=137 Identities=26% Similarity=0.262 Sum_probs=130.0
Q ss_pred cchhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhc
Q psy6141 2 KSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTG 81 (144)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~ 81 (144)
++.+...+.+.++.|..+.........+|.+.+ |++.|..+.|+..+.+..+..++.++...++||+.||+.++...
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~---dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l 85 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAA---DLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLL 85 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHH
Confidence 345778888899999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 82 LPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
.+++++.+.+++++|++.+.++|++.|+..|...+.......|+.|+++|+++.++....
T Consensus 86 ~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G 145 (394)
T COG2814 86 ALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTG 145 (394)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887654
No 8
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.80 E-value=4.5e-19 Score=128.50 Aligned_cols=138 Identities=25% Similarity=0.419 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHHhhhhhhhhcccccccccccC-----CCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHh
Q psy6141 4 AVLASLTVSLGSMIVGFASAYTSPAIPSMNQM-----GSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTIL 78 (144)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~ 78 (144)
+.+..+...++.+.++++.....+..|.+.++ .++.+.++++.+++.+...++..++++++|+++||+|||++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~ 89 (479)
T PRK10077 10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK 89 (479)
T ss_pred HHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 35566777788899999999998888877662 1233788889999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHh------------chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 79 STGLPFIVSFLLIALA------------NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 79 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
.+.++..++.....++ +.++.+++.|+++|++.|...+...++++|++|+++|++++++.+..
T Consensus 90 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~ 164 (479)
T PRK10077 90 IAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFA 164 (479)
T ss_pred HHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHH
Confidence 9999988887766652 22566789999999999999999999999999999999999887654
No 9
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.80 E-value=6.5e-19 Score=125.26 Aligned_cols=136 Identities=17% Similarity=0.152 Sum_probs=118.2
Q ss_pred chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch
Q psy6141 3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL 82 (144)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~ 82 (144)
+.|+....+..+.+..........+.+|.+.+ ++|.++++.++..+...++..+++++.|++.||+|||+.+..+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~ 93 (394)
T PRK10213 17 PNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQ---DLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAV 93 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHH
Confidence 45555566666655555555455567788877 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 83 PFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
+..++.+....+++++.+++.|+++|++.+...+....++.|++|+|+|+++.++....
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~ 152 (394)
T PRK10213 94 LLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGA 152 (394)
T ss_pred HHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHH
Confidence 99999988888999999999999999999999999999999999999999998887654
No 10
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.79 E-value=6.8e-19 Score=125.23 Aligned_cols=137 Identities=26% Similarity=0.259 Sum_probs=124.3
Q ss_pred chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch
Q psy6141 3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL 82 (144)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~ 82 (144)
++|..........+.++++........|.+.+ +++.++++.+++.+...++..++.++.|+++||+|||+.+..+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 88 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQ---EFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA 88 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence 45667777778888889999888888999988 899999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 83 PFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
+..++.+...+.++++.+.+.|++.|++.+...+....++.|++|+|+|+++.++.+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 148 (406)
T PRK11551 89 LFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGV 148 (406)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 888888888888999999999999999999999999999999999999999998876543
No 11
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.79 E-value=1.3e-18 Score=123.09 Aligned_cols=137 Identities=18% Similarity=0.141 Sum_probs=122.1
Q ss_pred cchhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhc
Q psy6141 2 KSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTG 81 (144)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~ 81 (144)
++..+..+.+..+.+..........+.+|.+.+ ++|.|+++.+++.+...++..+++++.|+++||+|||+.+..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~---~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~ 78 (381)
T PRK03633 2 STYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLA---QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLAS 78 (381)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344445666777788888888999999999998 88999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 82 LPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
++..++.....++++++.+++.|+++|++.+...+.....+.|..|+++|+++.+..+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (381)
T PRK03633 79 LIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMV 138 (381)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999988889999999999999999999988888878888999999999998886654
No 12
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.79 E-value=7.9e-19 Score=127.21 Aligned_cols=132 Identities=12% Similarity=0.044 Sum_probs=112.7
Q ss_pred HHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHH
Q psy6141 8 SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVS 87 (144)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 87 (144)
.....+.......+........|.+.+ +++.++++.+++.+.+.+++.+++++.|+++||+|||+.+..+.+...+.
T Consensus 31 ~~~~~~~~~~~y~~r~~~~~~~~~i~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~ 107 (467)
T PRK09556 31 YLVVFIGYLTMYLIRKNFKAAQNDMIS---TYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAIC 107 (467)
T ss_pred HHHHHHHHHHHHHHhcChhhhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHH
Confidence 344445555556677888888999888 89999999999999999999999999999999999999998877777666
Q ss_pred HHHHHH-----hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 88 FLLIAL-----ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 88 ~~~~~~-----~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
...... +++++.+++.|++.|++.+...+....+++|++|+++|++++++.+...
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~ 167 (467)
T PRK09556 108 MLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISH 167 (467)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeeccc
Confidence 655443 5789999999999999999988999999999999999999999877654
No 13
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.78 E-value=1e-18 Score=125.47 Aligned_cols=135 Identities=19% Similarity=0.162 Sum_probs=109.6
Q ss_pred chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCC---CCcchh---HHHHHHHHHHHHHHHHhhHHHHhhhcchhh
Q psy6141 3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVS---PTEEEA---SWIGSLMPLSALFGGMAGGPLIESLGRRTT 76 (144)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~ 76 (144)
++++......++.+.+.++...+....|.+.+ +++ .+..+. +.+.+...++..++++++|+++||+||||.
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~ 95 (432)
T PRK10406 19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAH---IFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKS 95 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 45555666677888899999998888888777 653 344433 334455556666999999999999999999
Q ss_pred HhhhchHHHHHHHHHHHhchHH--------HHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141 77 ILSTGLPFIVSFLLIALANGVP--------MILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF 140 (144)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 140 (144)
+..+.+...++.+.+++++++. .+++.|+++|++.|...+...++++|++|+++|++..++.+.
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~ 167 (432)
T PRK10406 96 MLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYV 167 (432)
T ss_pred HHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHH
Confidence 9999999999999988877653 588899999999999999999999999999999998776543
No 14
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.78 E-value=2.4e-18 Score=121.22 Aligned_cols=133 Identities=21% Similarity=0.213 Sum_probs=117.7
Q ss_pred HHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHH
Q psy6141 6 LASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFI 85 (144)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~ 85 (144)
.....................+..|.+.+ +++.++++.+++.+...++..++.++.|++.||+|||+.+..+.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~ 81 (385)
T TIGR00710 5 AFALLLGCLSILGPLGIDMYLPAFPEIAA---DLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFA 81 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHH
Confidence 33344444455566777888888999888 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 86 VSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
++.......++++.+.+.|++.|++.+...+....++.|.+|+++|++..++.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (385)
T TIGR00710 82 LSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPV 137 (385)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99998888999999999999999999999999999999999999999998887654
No 15
>PRK03699 putative transporter; Provisional
Probab=99.77 E-value=2.8e-18 Score=121.91 Aligned_cols=136 Identities=11% Similarity=0.077 Sum_probs=121.5
Q ss_pred cchhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhc
Q psy6141 2 KSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTG 81 (144)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~ 81 (144)
.+|++..+...+..+..+.......+..|.+.+ +++.|+++.+++.+...++..++.++.|++.||+|||+.+..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~---~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~ 79 (394)
T PRK03699 3 SNRIKLTWISFLSYALTGALVIVTGMVMGPIAE---YFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGF 79 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 356666777778888888888888889999988 89999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141 82 LPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF 140 (144)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 140 (144)
+...++.....++++++.+.+.|++.|++.+...+....++.|.+|+++|++..+..+.
T Consensus 80 ~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 138 (394)
T PRK03699 80 ALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDS 138 (394)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHH
Confidence 99999988888899999999999999999998888888999999999999988776543
No 16
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.77 E-value=2.5e-18 Score=124.64 Aligned_cols=132 Identities=20% Similarity=0.263 Sum_probs=120.8
Q ss_pred HHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHH
Q psy6141 7 ASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIV 86 (144)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~ 86 (144)
....++.+.+...++.....+..|.+.+ ++|.++++.+++.+.+.++..++.++.|+++||+|||+.+..+.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 79 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAG---DLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTL 79 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3455667777888888888889999988 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 87 SFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
+...+..+++++.+++.|+++|++.+...+....++.|.+|+++|+++.++.+..
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 134 (485)
T TIGR00711 80 GSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLT 134 (485)
T ss_pred HHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998887654
No 17
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.77 E-value=3e-18 Score=125.24 Aligned_cols=141 Identities=13% Similarity=0.092 Sum_probs=119.4
Q ss_pred cchhHHHHHHHHHHhhhhhhhhcccccccccccC--CCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhh
Q psy6141 2 KSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQM--GSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILS 79 (144)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~ 79 (144)
+++++....+.++.+.++++........|.+.+. .++.+.++.+.+++.+...++..++.++.|+++||+|||+.+..
T Consensus 12 ~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~ 91 (502)
T TIGR00887 12 WQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGM 91 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 3466777788888899999999888888876541 01234456677899999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHhch------HHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 80 TGLPFIVSFLLIALANG------VPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 80 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
+.++..++.+....+++ ++.+++.|++.|++.|...+..+.+++|++|+++|+++.++.+...
T Consensus 92 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~ 160 (502)
T TIGR00887 92 ELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQ 160 (502)
T ss_pred HHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence 99999998888777654 6789999999999999999999999999999999999998876653
No 18
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.76 E-value=4.3e-18 Score=122.42 Aligned_cols=134 Identities=12% Similarity=0.061 Sum_probs=118.5
Q ss_pred HHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHH
Q psy6141 6 LASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFI 85 (144)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~ 85 (144)
.......+..+...++........|.+.+ ++|.++++.+++.+...++..+++++.|++.||+|||+.+..+.++..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~ 99 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMPEMLA---DLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG 99 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence 44445556666666666777788899988 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 86 VSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
++.+....+++++.+.+.|++.|++.|...+....++.|++|+++|++++++.+...
T Consensus 100 ~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~ 156 (434)
T PRK11663 100 IINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAH 156 (434)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 999988899999999999999999999888888999999999999999998876543
No 19
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.76 E-value=4.4e-18 Score=124.06 Aligned_cols=133 Identities=21% Similarity=0.217 Sum_probs=111.3
Q ss_pred hHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcch-hHH-----HHHHHHHHHHHHHHhhHHHHhhhcchhhHh
Q psy6141 5 VLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEE-ASW-----IGSLMPLSALFGGMAGGPLIESLGRRTTIL 78 (144)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~ 78 (144)
+.......++.+.++++...+....|.+.+ +++.+.++ ..+ ..+...++..+++++.|+++||+|||+++.
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~ 91 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGK---VFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILA 91 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 345566678889999999998888888776 56433322 122 246777899999999999999999999999
Q ss_pred hhchHHHHHHHHHHHhchHHH--------HHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141 79 STGLPFIVSFLLIALANGVPM--------ILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF 140 (144)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 140 (144)
.+.++..++.+.+++++++.. +.+.|+++|++.|...+....+++|++|+++|++..++.+.
T Consensus 92 ~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~ 161 (490)
T PRK10642 92 ITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDF 161 (490)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHH
Confidence 999999999999999998764 78899999999999999999999999999999998877653
No 20
>KOG1330|consensus
Probab=99.76 E-value=4.1e-18 Score=120.21 Aligned_cols=138 Identities=12% Similarity=0.097 Sum_probs=127.8
Q ss_pred chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch
Q psy6141 3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL 82 (144)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~ 82 (144)
+.++....+++...+...+........+...+ .+|+++++.|++++.+.+...++.|+.|+++||++||+++.++..
T Consensus 30 ~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~---~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~ 106 (493)
T KOG1330|consen 30 SPTLTLVILCLVNLMNYADRYTIAGVLKEVQT---YFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIF 106 (493)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhhhhhHHHHH---hcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHH
Confidence 45666778888888888888888887777777 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhcc
Q psy6141 83 PFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGN 143 (144)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 143 (144)
+..++.+...++.++|.+.++|.+.|+|.+...++.+..++|.+|..+|+++.++.+....
T Consensus 107 iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ip 167 (493)
T KOG1330|consen 107 IWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIP 167 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999887653
No 21
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.76 E-value=8.4e-18 Score=119.03 Aligned_cols=130 Identities=16% Similarity=0.143 Sum_probs=116.0
Q ss_pred HHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHH
Q psy6141 8 SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVS 87 (144)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 87 (144)
........+..+.......+.+|.+.+ ++|.++++.++..+...++..+++++.|++.||+|||+.+..+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 81 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELAH---DVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIG 81 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHHH---HcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHH
Confidence 345556666777777777788899888 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141 88 FLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF 140 (144)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 140 (144)
.+.+.++++++.+++.|++.|++.+...+.......|++|+++|+++.++...
T Consensus 82 ~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (382)
T PRK10091 82 NAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVS 134 (382)
T ss_pred HHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHH
Confidence 99999999999999999999999998888888899999999999988876554
No 22
>PRK10504 putative transporter; Provisional
Probab=99.75 E-value=8.5e-18 Score=121.78 Aligned_cols=134 Identities=17% Similarity=0.148 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHH
Q psy6141 5 VLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPF 84 (144)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~ 84 (144)
.+..+.+..+.+...++.....+..|.+.+ ++|.++++.+++.+.+.++..++.++.|+++||+|||+.++.+..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~ 85 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ---SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLF 85 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 445667777888888888888889999998 89999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 85 IVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
.++.+.+.++++.+.+++.|+++|++.+...+.....+.|.+|+++|+++.++....
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (471)
T PRK10504 86 TLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLP 142 (471)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 888888888899999999999999999999999999999999999999988876643
No 23
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.75 E-value=8.5e-18 Score=122.40 Aligned_cols=136 Identities=20% Similarity=0.187 Sum_probs=122.9
Q ss_pred chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch
Q psy6141 3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL 82 (144)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~ 82 (144)
++++....+.+..+...++.....+..|.+.+ +++.++++.++..+...++..++.++.|+++||+|||+.+..+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 93 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQG---EFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 34566677778888888888888888898887 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 83 PFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
...++.+...+.++++.+.+.|++.|++.+...+....++.|.+|+|+|+++.++....
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 152 (496)
T PRK03893 94 LFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISG 152 (496)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 99999998899999999999999999999999999999999999999999988877654
No 24
>TIGR00895 2A0115 benzoate transport.
Probab=99.75 E-value=1.1e-17 Score=117.99 Aligned_cols=136 Identities=26% Similarity=0.229 Sum_probs=118.7
Q ss_pred hhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchH
Q psy6141 4 AVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLP 83 (144)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~ 83 (144)
+++.........+..++.........|.+.+ +++.++++.+++.+...++..++.++.|+++||+|||+.+..+.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 91 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISA---EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL 91 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 3444555555666777777777778888887 8999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 84 FIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
..++.......++++.+.+.+++.|++.+...+....++.|.+|+++|+++.++.+...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 150 (398)
T TIGR00895 92 FSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGY 150 (398)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHH
Confidence 88888888888999999999999999999999999999999999999999988876543
No 25
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.75 E-value=1.5e-17 Score=118.31 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=106.5
Q ss_pred hcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHH
Q psy6141 23 AYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILA 102 (144)
Q Consensus 23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (144)
....+..|.+.+ +++.|+++.++..+.+.++..+++++.|++.||+|||+++..+..+.+++.+.+.++++++.+++
T Consensus 26 ~~~~~~lp~i~~---~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~ 102 (393)
T PRK09705 26 TSVGPLLPQLRQ---ASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLS 102 (393)
T ss_pred hccchhHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHH
Confidence 567788899988 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141 103 GRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF 140 (144)
Q Consensus 103 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 140 (144)
.|+++|++.+...+..+..+.|++| ++|+++++..+.
T Consensus 103 ~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~ 139 (393)
T PRK09705 103 SALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSA 139 (393)
T ss_pred HHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHH
Confidence 9999999999998888899999997 779999888764
No 26
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.75 E-value=5.2e-18 Score=118.83 Aligned_cols=127 Identities=15% Similarity=0.111 Sum_probs=108.5
Q ss_pred HHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHH
Q psy6141 11 VSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLL 90 (144)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 90 (144)
.....+..+. .....+..|.+.+ +++.++++.+++.+...++..+++++.|+++||+|||+.+..+.++..++...
T Consensus 9 ~~~~~~~~~~-~~~~~~~~~~~~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~ 84 (377)
T TIGR00890 9 TVIMCFTSGY-VYTWTLLAPPLGR---YFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTF 84 (377)
T ss_pred HHHHHHHhhH-HhhhhhHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHH
Confidence 3333333333 4456778888888 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 91 IALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 91 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
..++++++.+++.|.+.|++.+...+.......|++| |+|+++.++.....
T Consensus 85 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 135 (377)
T TIGR00890 85 YAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGY 135 (377)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhc
Confidence 9999999999999999999999887777778888887 56998888876543
No 27
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.75 E-value=2.1e-17 Score=117.74 Aligned_cols=135 Identities=19% Similarity=0.164 Sum_probs=117.7
Q ss_pred chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch
Q psy6141 3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL 82 (144)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~ 82 (144)
++++....+.+..+...+......+.+|.+.+ +++.++++.++..+...++..++.++.|+++||+|||+.+..+..
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 86 (406)
T PRK15402 10 QALLFPLCLVLFEFATYIANDMIQPGMLAVVE---DFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVA 86 (406)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHhcchHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 44555666666666667777878888888877 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141 83 PFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF 140 (144)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 140 (144)
...++......+++++.+++.|++.|++.+...+.....+.|.+|+++|.+..++...
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 144 (406)
T PRK15402 87 FFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMAN 144 (406)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 9998888888899999999999999999988888888999999999999887776554
No 28
>PRK15075 citrate-proton symporter; Provisional
Probab=99.75 E-value=1.1e-17 Score=120.31 Aligned_cols=135 Identities=24% Similarity=0.331 Sum_probs=112.9
Q ss_pred chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHH-HHHH-----HHHHHHHHHhhHHHHhhhcchhh
Q psy6141 3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWI-GSLM-----PLSALFGGMAGGPLIESLGRRTT 76 (144)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~i~~~~~g~l~d~~g~r~~ 76 (144)
.|++......++.+.+.++........|.+.+ +++.++.+.+.. .+.. .++..+++++.|+++||+||||.
T Consensus 12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~ 88 (434)
T PRK15075 12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAK---TFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKG 88 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHH
Confidence 35567778888999999999999999999988 888777665433 2222 23335788999999999999999
Q ss_pred HhhhchHHHHHHHHHHHhchHH--------HHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141 77 ILSTGLPFIVSFLLIALANGVP--------MILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF 140 (144)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 140 (144)
++.+.+...++...+.++++++ .+++.|+++|++.+...+....+++|++|+|+|++..++.+.
T Consensus 89 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~ 160 (434)
T PRK15075 89 LIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSA 160 (434)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHH
Confidence 9999999999999999988876 368899999999999888888999999999999999887654
No 29
>PRK12382 putative transporter; Provisional
Probab=99.75 E-value=1.7e-17 Score=117.75 Aligned_cols=132 Identities=13% Similarity=0.126 Sum_probs=106.9
Q ss_pred HHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHH
Q psy6141 8 SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVS 87 (144)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 87 (144)
...+.+..+..........+.+|.+.++ ++|.|+++.+++.+...++..+++++.|+++||+||||.+..+.+...++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~--~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~ 94 (392)
T PRK12382 17 LFRIAFAVFLTYMTVGLPLPVIPLFVHH--DLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLA 94 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHH--hcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHH
Confidence 3344445555556667777888876531 78999999999999999999999999999999999999999887776665
Q ss_pred HHHHH--------HhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 88 FLLIA--------LANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 88 ~~~~~--------~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
..... ..++++.+++.|+++|++.+...+....++.|.+|+|+|+++.++.+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~ 156 (392)
T PRK12382 95 GLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMA 156 (392)
T ss_pred HHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHH
Confidence 43221 1357788999999999999988888888999999999999999887654
No 30
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.74 E-value=2.7e-17 Score=117.69 Aligned_cols=127 Identities=17% Similarity=0.151 Sum_probs=111.3
Q ss_pred HHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHH
Q psy6141 12 SLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLI 91 (144)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~ 91 (144)
....+..........+.+|.+.+ +++.+..+.++..+.+.++..+++++.|+++||+|||+.++.+.....++...+
T Consensus 22 ~~~~~~~~~~~~~~~p~l~~i~~---~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~ 98 (413)
T PRK15403 22 ILYDFAAYLTTDLIQPGIINVVR---DFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAAT 98 (413)
T ss_pred HHHHHHHHHHHHhhccCHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 34444555677788888998877 899999999999999999999999999999999999999999999999999999
Q ss_pred HHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 92 ALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 92 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
..+++++.+++.|+++|++.+...+....+..|.+|+++|++..++....
T Consensus 99 ~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (413)
T PRK15403 99 LFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSI 148 (413)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999999999999999998876677778899999999999887765544
No 31
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.74 E-value=1.4e-17 Score=118.37 Aligned_cols=137 Identities=17% Similarity=0.136 Sum_probs=113.9
Q ss_pred chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch
Q psy6141 3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL 82 (144)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~ 82 (144)
|..+....+.+..+..........+.+|.+.++ +++.|+++.+++.+...++..+++++.|+++||+||||.+..+.+
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~--~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~ 89 (399)
T PRK05122 12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHD--QLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLC 89 (399)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHH
Confidence 345556667777777777788888888886542 789999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHh--------chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 83 PFIVSFLLIALA--------NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 83 ~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
...++...+... .+++.+++.|+++|++.+...+....+..|..|+|+|+++.++.+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 156 (399)
T PRK05122 90 GCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIA 156 (399)
T ss_pred HHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhh
Confidence 877765544332 24667889999999999999888888999999999999998876543
No 32
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.74 E-value=2e-17 Score=115.14 Aligned_cols=127 Identities=24% Similarity=0.284 Sum_probs=109.7
Q ss_pred HHHhhhhhhhhccccccc-ccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHH
Q psy6141 13 LGSMIVGFASAYTSPAIP-SMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLI 91 (144)
Q Consensus 13 ~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~ 91 (144)
+..+..........+..| .+.+ +++.++++.+++.+...++..++.++.|+++||+|||+.+..+.++..++....
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~ 79 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAE---ELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLL 79 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHC---CSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHh
Confidence 445556666666777788 5656 899999999999999999999999999999999999999999999999986666
Q ss_pred HHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 92 ALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 92 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
.++++.+.+++.|++.|++.+...+....++.|++|+++|++..++.+...
T Consensus 80 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 130 (352)
T PF07690_consen 80 AFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGF 130 (352)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHH
T ss_pred hhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchh
Confidence 666777899999999999999999999999999999999999998877653
No 33
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.73 E-value=1.2e-17 Score=117.42 Aligned_cols=123 Identities=17% Similarity=0.108 Sum_probs=110.6
Q ss_pred hhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhch
Q psy6141 17 IVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANG 96 (144)
Q Consensus 17 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~ 96 (144)
....+........|.+.+ +++.++.+.+++.+...++..++.++.|++.||+|||+.+..+.+...++.....++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~ 81 (399)
T TIGR00893 5 INYLDRANLSFAAPMLQE---DLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGA 81 (399)
T ss_pred HHHHHHHhhhHhHHHHHH---hhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcC
Confidence 334455666667788777 89999999999999999999999999999999999999999999999999998999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 97 VPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 97 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
++.+.+.|++.|++.+...+....++.|++|+|+|++..++.+...
T Consensus 82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 127 (399)
T TIGR00893 82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQ 127 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998876654
No 34
>PRK10133 L-fucose transporter; Provisional
Probab=99.73 E-value=3.1e-17 Score=118.18 Aligned_cols=135 Identities=13% Similarity=0.098 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchH
Q psy6141 4 AVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLP 83 (144)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~ 83 (144)
.......+....+..+.......+..|.+.+ +++.++++.++..+.+.++..+++++.|++.||+|||+++..+.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~---~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~ 100 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQ---AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 4455566677778888888888889999977 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH---HHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 84 FIVSFLLI---ALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 84 ~~~~~~~~---~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
..++.+++ ..+++++.+++.|+++|++.|...+..+.++.|..|+++|...+++.+..
T Consensus 101 ~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~ 161 (438)
T PRK10133 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTF 161 (438)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHH
Confidence 99998775 45789999999999999999999999999999987777776666665544
No 35
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.73 E-value=4.7e-17 Score=118.34 Aligned_cols=133 Identities=14% Similarity=0.153 Sum_probs=111.0
Q ss_pred hhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchH
Q psy6141 4 AVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLP 83 (144)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~ 83 (144)
+++.........+...+......+..|.+.+ +++.+.++.+++.+...++..+++++.|+++||+|||+.+..+.+.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~ 110 (476)
T PLN00028 34 HMRAFHLSWISFFTCFVSTFAAAPLLPIIRD---NLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLML 110 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 4444445555555556666667777888887 8999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141 84 FIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF 140 (144)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 140 (144)
..++.+...++++++.+++.|++.|++.+... ....+++|++|+++|+++.++.+.
T Consensus 111 ~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~ 166 (476)
T PLN00028 111 TAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAG 166 (476)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHH
Confidence 88888888889999999999999999887643 455678999999999999888653
No 36
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.73 E-value=1.6e-17 Score=117.20 Aligned_cols=117 Identities=15% Similarity=0.102 Sum_probs=95.2
Q ss_pred hhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHH
Q psy6141 22 SAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMIL 101 (144)
Q Consensus 22 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (144)
...+.+.+|.+.+ |++.++++.+++.+.+.+++.+++++.|+++||+|||+.+.........+.......++++.++
T Consensus 7 ~~~~~~~lp~i~~---~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (368)
T TIGR00903 7 WVTFSPVLSLVAE---DIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLL 83 (368)
T ss_pred HHHHHhhHHHHHH---HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 3456678888888 8999999999999999999999999999999999999877655544444433223337899999
Q ss_pred HHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 102 AGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 102 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
+.|+++|++.+. ........+|++|+|+|+++.++.+...
T Consensus 84 ~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~ 123 (368)
T TIGR00903 84 ACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAM 123 (368)
T ss_pred HHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 999999999986 4455566799999999999999877654
No 37
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.73 E-value=4.1e-17 Score=114.46 Aligned_cols=126 Identities=16% Similarity=0.089 Sum_probs=108.7
Q ss_pred HHHHHhhhhhhhhcccccccc-cccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHH
Q psy6141 11 VSLGSMIVGFASAYTSPAIPS-MNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFL 89 (144)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 89 (144)
.++..+..........+..|. +.+ ++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.+...++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~ 82 (366)
T TIGR00886 6 SWFGFFLSFSVWFAFSPLAVQMIKD---DLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCL 82 (366)
T ss_pred HHHHHHHHHHHHHHhHHhhhHHHHH---HhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 444555555556677788885 555 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc-hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141 90 LIALAN-GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF 140 (144)
Q Consensus 90 ~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 140 (144)
...+.+ +++.+.+.|+++|++.+. ......+++|++|+++|+++.++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~ 133 (366)
T TIGR00886 83 WAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAG 133 (366)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHH
Confidence 888888 999999999999998654 45677899999999999999888663
No 38
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.72 E-value=1.2e-17 Score=117.06 Aligned_cols=125 Identities=10% Similarity=0.036 Sum_probs=112.6
Q ss_pred HhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh
Q psy6141 15 SMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA 94 (144)
Q Consensus 15 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 94 (144)
.+...++........|.+.+ +++.++++.+++.+...++..++.++.|+++||+|||+.+..+.++..++.+...++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 80 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLVE---EIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS 80 (379)
T ss_pred hhHHHHhHHhhhhhhHHHHH---HhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh
Confidence 34555666777777888877 899999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 95 NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 95 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
++++.+++.|++.|++.+...+....++.|++|+++|+++.++.+...
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 128 (379)
T TIGR00881 81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSH 128 (379)
T ss_pred hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccc
Confidence 999999999999999999999999999999999999999988776543
No 39
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.72 E-value=5.5e-17 Score=112.54 Aligned_cols=129 Identities=27% Similarity=0.359 Sum_probs=116.8
Q ss_pred HHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHH
Q psy6141 11 VSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLL 90 (144)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 90 (144)
+....+..........+..|.+.+ +.+.++++.+++.+...++..++.++.|+++||+|||+.+..+.+...++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAE---DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 445566677777888888899888 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 91 IALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 91 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
....++++.+.+.|++.|++.+...+....+..|.+|+|+|++..++.+...
T Consensus 81 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (352)
T cd06174 81 LAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGF 132 (352)
T ss_pred HHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHH
Confidence 8888999999999999999999999999999999999999999998876543
No 40
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.72 E-value=7.1e-17 Score=114.60 Aligned_cols=135 Identities=19% Similarity=0.225 Sum_probs=116.1
Q ss_pred chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch
Q psy6141 3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL 82 (144)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~ 82 (144)
+.++.............+......+.+|.+.+ +++.++.+.+++.+...++..++.++.|+++||+|||+.+..+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~ 81 (394)
T PRK11652 5 RNVNLLFMLVLLVAVGQMAQTIYVPAIADMAR---DLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMS 81 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHH
Confidence 34555555556666666677777788898888 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141 83 PFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF 140 (144)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 140 (144)
...++.......++++.+.+.|++.|++.+...+....+..|.+++++|+++.+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (394)
T PRK11652 82 IFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNM 139 (394)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999888888889999999999999999888778888888999999999887776544
No 41
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.72 E-value=4.9e-17 Score=116.25 Aligned_cols=133 Identities=15% Similarity=0.124 Sum_probs=118.3
Q ss_pred HHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHH
Q psy6141 7 ASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIV 86 (144)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~ 86 (144)
....++...+..++......+..|.+.+ +++.++.+.+++.+...+++.++.++.|++.||+|||+.+..+.++.++
T Consensus 4 ~~~~~~~~f~~~G~~~~~~~~l~~~~~~---~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~ 80 (410)
T TIGR00885 4 PFALITSLFALWGFANDITNPMVPQFQQ---AFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYAL 80 (410)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 3456677788888888888899999988 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 87 SFLLIAL---ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 87 ~~~~~~~---~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
+...... .++++.+.+.|++.|++.|..++..+.++.|..|+++|++..++.+...
T Consensus 81 g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (410)
T TIGR00885 81 GAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFN 139 (410)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHH
Confidence 8877543 4578899999999999999999999999999999999999888766543
No 42
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.72 E-value=3.5e-17 Score=117.75 Aligned_cols=134 Identities=28% Similarity=0.457 Sum_probs=110.1
Q ss_pred HHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCC--------cchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhH
Q psy6141 6 LASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPT--------EEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTI 77 (144)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~ 77 (144)
.....+.++.+...++.....+..|...+ +++.+ ..+.+++.+...++..++.++.|+++||+|||+.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~ 104 (481)
T TIGR00879 28 LLSLIAAIGGLMFGYDTGVIGGALALPAF---EFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSL 104 (481)
T ss_pred HHHHHHHHHHHhcccccchhhhhhhcHHH---HHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHH
Confidence 33344445556667777777777776665 44444 78999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHh---chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 78 LSTGLPFIVSFLLIALA---NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 78 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
..+.++..++..+.... .+++.+++.|++.|++.+...+....+++|++|+++|+++.++.+...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 172 (481)
T TIGR00879 105 LIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAI 172 (481)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHH
Confidence 99999988888887553 345588999999999999999999999999999999999998876543
No 43
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.71 E-value=3.5e-17 Score=114.27 Aligned_cols=127 Identities=13% Similarity=0.081 Sum_probs=110.1
Q ss_pred HHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHH
Q psy6141 13 LGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIA 92 (144)
Q Consensus 13 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 92 (144)
...+..........+.+|.+.+ +.+.++.+.+++.+...++..++.++.|+++||+|||+.+..+.++..++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~ 82 (365)
T TIGR00900 6 AAQLISLIGTAITQVALPLYVL---AGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLP 82 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHH
Confidence 4445555555666677788887 7888999999999999999999999999999999999999999888888777777
Q ss_pred Hhc-----hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 93 LAN-----GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 93 ~~~-----~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
..+ +++.+++.|++.|++.+...+...+++.|++|+++|++..++.+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (365)
T TIGR00900 83 FVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVR 137 (365)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHH
Confidence 666 89999999999999999999999999999999999999998876653
No 44
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.71 E-value=5.7e-17 Score=117.14 Aligned_cols=126 Identities=10% Similarity=0.084 Sum_probs=104.0
Q ss_pred HHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHH
Q psy6141 13 LGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIA 92 (144)
Q Consensus 13 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 92 (144)
+.......+........|.+.+ + +.++++.+++.+...++..+++++.|+++||+|||+.++.+.++.+++.+...
T Consensus 36 ~~~~~~~~~~~~~~~~~p~l~~---~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~ 111 (452)
T PRK11273 36 FGYAAYYLVRKNFALAMPYLVE---Q-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG 111 (452)
T ss_pred HHHHHHHHHHHHHHHhhHHHHH---c-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHH
Confidence 3333334444445556777665 6 99999999999999999999999999999999999999999998888888777
Q ss_pred Hh----chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 93 LA----NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 93 ~~----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
+. .+++.+++.|++.|++.+...+.....+.|++|+++|+++.++.+...
T Consensus 112 ~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 165 (452)
T PRK11273 112 FVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAH 165 (452)
T ss_pred hhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 64 367788889999999998888877888999999999999998865543
No 45
>PRK09952 shikimate transporter; Provisional
Probab=99.71 E-value=6e-17 Score=116.68 Aligned_cols=135 Identities=16% Similarity=0.113 Sum_probs=107.5
Q ss_pred hhHHHHHHHHHHhhhhhhhhcccccccccccCCCCC--CCCcchhHHHH-----HHHHHHHHHHHHhhHHHHhhhcchhh
Q psy6141 4 AVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRV--SPTEEEASWIG-----SLMPLSALFGGMAGGPLIESLGRRTT 76 (144)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~i~~~~~g~l~d~~g~r~~ 76 (144)
+++......++.+.+.++........|....+ ++ +.++++ +... +...++..+++++.|+++||+|||+.
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~ 96 (438)
T PRK09952 20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNR--EFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRM 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHH
Confidence 44556667778889999998888776654331 33 455543 4432 34556677899999999999999999
Q ss_pred HhhhchHHHHHHHHHHHhchHH--------HHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 77 ILSTGLPFIVSFLLIALANGVP--------MILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
+..+.++..++...+.+++++. .+++.|+++|++.|...+....+++|++|+++|++..+..+..
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g 169 (438)
T PRK09952 97 LMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVG 169 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHH
Confidence 9999999999999999998876 4888999999999999999999999999999999877765543
No 46
>PRK10054 putative transporter; Provisional
Probab=99.70 E-value=1.3e-16 Score=113.59 Aligned_cols=132 Identities=12% Similarity=0.142 Sum_probs=112.0
Q ss_pred HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHH
Q psy6141 9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSF 88 (144)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 88 (144)
..+.+..+..........+.+|.+.++ ++|.++++.++..+...++..+.+++.|+++||+|||+.++.+.+...++.
T Consensus 10 ~~l~~~~~~~~~g~~~~~~~l~~~l~~--~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~ 87 (395)
T PRK10054 10 SALLASSLLLTIGRGATLPFMTIYLSR--QYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGF 87 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHH
Confidence 344455666666677777788877752 789999999999999999999999999999999999999999988888888
Q ss_pred HHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 89 LLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
....+.++++.+++.+.+.|.+.+...+....+..|..|+++|+++.++.+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 141 (395)
T PRK10054 88 IAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTML 141 (395)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHH
Confidence 888888899888888888888777777888899999999999999988876654
No 47
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.70 E-value=1.9e-16 Score=112.38 Aligned_cols=119 Identities=18% Similarity=0.231 Sum_probs=106.5
Q ss_pred hhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHH
Q psy6141 20 FASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPM 99 (144)
Q Consensus 20 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (144)
.......+.+|.+.+ +++.++.+.++..+...++..++.++.|+++||+|||+.++.+.+...++......+++.+.
T Consensus 17 ~~~~~~~~~lp~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~ 93 (392)
T PRK10473 17 AGIDMYLVGLPRIAA---DLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSL 93 (392)
T ss_pred HHHHHHhhhHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 333444567888888 89999999999999999999999999999999999999999999999999888888899999
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 100 ILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 100 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
+.+.|++.|++.+...+....++.|.+|+++|+++.++.+..
T Consensus 94 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 135 (392)
T PRK10473 94 FLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGI 135 (392)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 999999999999988888999999999999999998887654
No 48
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.69 E-value=3.4e-16 Score=113.37 Aligned_cols=140 Identities=15% Similarity=0.048 Sum_probs=115.6
Q ss_pred chhHHHHHHHHHHhhhhhhhhcccccccccccC-------------------CCCCCCCcchhHHHHHHHHHHHHHHHHh
Q psy6141 3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQM-------------------GSRVSPTEEEASWIGSLMPLSALFGGMA 63 (144)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 63 (144)
+++.....+.++......+........|.+.++ ..+++.+..+.+.+.+.+.+++.+++++
T Consensus 16 ~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~ 95 (465)
T TIGR00894 16 FRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQIP 95 (465)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHcc
Confidence 456666666666666677777777777666441 0167888999999999999999999999
Q ss_pred hHHHHhhhcchhhHhhhchHHHHHHHHHHH--hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 64 GGPLIESLGRRTTILSTGLPFIVSFLLIAL--ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 64 ~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
.|+++||+|||+.+..+.++..++...... ..+++.+++.|+++|++.+...+....+++|++|+++|+++.++.+..
T Consensus 96 ~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 175 (465)
T TIGR00894 96 VGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSG 175 (465)
T ss_pred hHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 999999999999999998888887766544 356788999999999999999999999999999999999999987664
Q ss_pred c
Q psy6141 142 G 142 (144)
Q Consensus 142 ~ 142 (144)
.
T Consensus 176 ~ 176 (465)
T TIGR00894 176 F 176 (465)
T ss_pred H
Confidence 3
No 49
>KOG0254|consensus
Probab=99.69 E-value=2.5e-16 Score=115.49 Aligned_cols=138 Identities=29% Similarity=0.473 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHhhhhhh--hhcccccccccccCCCCCCCCc----chhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHh
Q psy6141 5 VLASLTVSLGSMIVGFA--SAYTSPAIPSMNQMGSRVSPTE----EEASWIGSLMPLSALFGGMAGGPLIESLGRRTTIL 78 (144)
Q Consensus 5 ~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~ 78 (144)
...........+..+++ .....+..+.+.++......+. .+.+++.+...++..+++++.|+++|++|||+.++
T Consensus 44 ~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~ 123 (513)
T KOG0254|consen 44 ILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLL 123 (513)
T ss_pred HHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33445555666666765 4455555555544211111122 24489999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 79 STGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
.+.++..++.++.++++|++++.++|++.|+|.|......+.+.+|..|++.||...+..+...
T Consensus 124 ~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~ 187 (513)
T KOG0254|consen 124 LAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFI 187 (513)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988877654
No 50
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.69 E-value=3.9e-16 Score=112.37 Aligned_cols=132 Identities=10% Similarity=0.020 Sum_probs=110.0
Q ss_pred HHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHH
Q psy6141 6 LASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFI 85 (144)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~ 85 (144)
+......+.............+..+.+.+ +++++|++|.++..+...+++.+..++.|++.||+|.|+++..+.++..
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~--~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~ 111 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNK--IGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 34444444444444555566666666654 2799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-----chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141 86 VSFLLIALA-----NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF 140 (144)
Q Consensus 86 ~~~~~~~~~-----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 140 (144)
+......++ ++++.+++.|++.|++ +...+.....+++++|+++||++.|+...
T Consensus 112 i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g 170 (462)
T PRK15034 112 IPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGG 170 (462)
T ss_pred HHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHH
Confidence 988888876 7999999999999998 66788889999999999999999998853
No 51
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.69 E-value=2.2e-16 Score=113.03 Aligned_cols=115 Identities=18% Similarity=0.123 Sum_probs=105.2
Q ss_pred hcccccccccccCCCCCCCCcch-hHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHH
Q psy6141 23 AYTSPAIPSMNQMGSRVSPTEEE-ASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMIL 101 (144)
Q Consensus 23 ~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (144)
.......|.+.+ ++|+++++ .+.+.+.+..++.+..++.|+++||+|.|+.+..+.+...+...+..++++...+.
T Consensus 43 ~n~s~a~p~L~~---elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~ 119 (511)
T TIGR00806 43 PGESFITPYLLT---VLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQ 119 (511)
T ss_pred chHHHHHHHHHH---HcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666666 89999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 102 AGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 102 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
+.|++.|++.|... ....++.+++|+++|+++.++....
T Consensus 120 i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg 158 (511)
T TIGR00806 120 LMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAA 158 (511)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 99999999999998 8999999999999999999887654
No 52
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.68 E-value=1.5e-16 Score=112.09 Aligned_cols=118 Identities=21% Similarity=0.292 Sum_probs=108.1
Q ss_pred hhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHH
Q psy6141 21 ASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMI 100 (144)
Q Consensus 21 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (144)
......|..|.+.+ ++|.++++.++..+...++..++.++.|+++||+|||+.+..+.+...++...+...++++.+
T Consensus 6 ~~~~~~p~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 82 (377)
T PRK11102 6 AIDMYLPALPVIAA---DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQL 82 (377)
T ss_pred HHHHHhccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 34556688898888 899999999999999999999999999999999999999999999999999999889999999
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 101 LAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 101 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
.+.|++.|++.+...+....++.|.+|+++|++..++.+..
T Consensus 83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (377)
T PRK11102 83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLV 123 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999999999998899999999999999999999887654
No 53
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.68 E-value=2e-16 Score=110.83 Aligned_cols=137 Identities=12% Similarity=0.082 Sum_probs=126.0
Q ss_pred hhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchH
Q psy6141 4 AVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLP 83 (144)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~ 83 (144)
|+.....+.+++....+..-.+....|.+.+ +.+.|.+|.+.+.+.+.+.+.++.++.|.++||.++|+.+-.++++
T Consensus 27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e---~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLil 103 (448)
T COG2271 27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIE---DGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLIL 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHH
Confidence 4455566667777888888889999999998 8889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhcc
Q psy6141 84 FIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGN 143 (144)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 143 (144)
.++..+.+.++++.+.+.+...+.|..+|.-.|++...++.++|+++||+..++.+...|
T Consensus 104 sai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shN 163 (448)
T COG2271 104 SAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHN 163 (448)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhh
Confidence 999999999999999999999999999999999999999999999999999998887655
No 54
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.68 E-value=2.8e-16 Score=111.80 Aligned_cols=125 Identities=11% Similarity=-0.022 Sum_probs=101.0
Q ss_pred HHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHH
Q psy6141 12 SLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLI 91 (144)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~ 91 (144)
..+.+.............|...+ +++.++.+.+++.+.+.+...+..++.|+++||+||||+++.+.++..++.+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~ 85 (393)
T PRK11195 9 MAAQFFSALADNALLFAAIALLK---ELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLM 85 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHH
Confidence 33344444333333333444455 788888899999999999999999999999999999999999999988887776
Q ss_pred HHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 92 ALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 92 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
.+..+. ++.|+++|++.+...|...+++.|++|+|+|+++.++.+...
T Consensus 86 ~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~ 133 (393)
T PRK11195 86 LFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGST 133 (393)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 666554 678999999999999999999999999999999999876543
No 55
>PRK11043 putative transporter; Provisional
Probab=99.68 E-value=4.9e-16 Score=110.56 Aligned_cols=122 Identities=18% Similarity=0.149 Sum_probs=105.7
Q ss_pred HHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH
Q psy6141 14 GSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL 93 (144)
Q Consensus 14 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 93 (144)
......+....+.|..|.+.+ +++.++++.++..+...++..++.+++|+++||+|||+.+..+..+..++.....+
T Consensus 14 ~~~~~~~~~~~~~p~~~~i~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 90 (401)
T PRK11043 14 LSMLGFLATDMYLPAFKAIQA---DLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLW 90 (401)
T ss_pred HHHHHHHHHHHHHhhHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHH
Confidence 344444556667777888777 89999999999999999999999999999999999999999999888888888888
Q ss_pred hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhh
Q psy6141 94 ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLP 138 (144)
Q Consensus 94 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~ 138 (144)
.++++.+.+.|++.|++.+...+.....+.|.+|++++++..+..
T Consensus 91 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (401)
T PRK11043 91 VESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATI 135 (401)
T ss_pred hcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999999999999999998887777788999999999887766554
No 56
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.67 E-value=4.2e-16 Score=111.16 Aligned_cols=131 Identities=15% Similarity=0.114 Sum_probs=113.3
Q ss_pred HHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHH
Q psy6141 10 TVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFL 89 (144)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 89 (144)
.+....++.........+.+|.+.++ +.+.++.+.++..+...+...+..++.|+++||+|||+.+..+.....++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 14 FLLIDNMLVVLGFFVVFPLISIRFVD--QLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHH
Confidence 33455555566666667777776542 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 90 LIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
.....++++.+.+.|++.|++.+...+...+++.|.+|+|+|+++.++.+...
T Consensus 92 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 144 (400)
T PRK11646 92 TMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQD 144 (400)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 98888999999999999999998888888899999999999999999876553
No 57
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.67 E-value=5.4e-16 Score=110.56 Aligned_cols=129 Identities=12% Similarity=0.085 Sum_probs=103.7
Q ss_pred HHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHH
Q psy6141 10 TVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFL 89 (144)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 89 (144)
...++.+..........++.|.+.+ +++.++++.++..+.+.++..+++++.|++.||+||||.+..+.....++..
T Consensus 17 ~~~l~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~ 93 (402)
T TIGR00897 17 WGYIGVVVFMTGDGLEQGWLSPFLK---ALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHA 93 (402)
T ss_pred HHHHHHHHHHHhhhhHHHhHHHHHH---HhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 3344444444444444456677777 7899999999999999999999999999999999999999998888888765
Q ss_pred HHH---H-hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 90 LIA---L-ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 90 ~~~---~-~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
... . .++++.+++.|.+.|++.+...+.....+.|.+|+|+|++++|+.+..
T Consensus 94 ~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 149 (402)
T TIGR00897 94 AFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAV 149 (402)
T ss_pred HHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 542 2 247788888999999998887777788889999999999999987654
No 58
>TIGR00898 2A0119 cation transport protein.
Probab=99.66 E-value=3.1e-16 Score=114.54 Aligned_cols=112 Identities=20% Similarity=0.201 Sum_probs=102.1
Q ss_pred ccccccccCCCCCCCC---cchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHH
Q psy6141 27 PAIPSMNQMGSRVSPT---EEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAG 103 (144)
Q Consensus 27 ~~~p~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (144)
+..|.+.+ |++.+ +.+.++..+.+.++.+++.++.|+++||+|||+.++.+.++..++.+...++++++.+.+.
T Consensus 110 ~~~~~i~~---e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 186 (505)
T TIGR00898 110 TFSSTIVT---EWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVF 186 (505)
T ss_pred cccccEEE---EecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 34566666 88888 8889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 104 RCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 104 ~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
|++.|++.+...+....++.|++|+++|+++.++.+..
T Consensus 187 r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~ 224 (505)
T TIGR00898 187 RLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVF 224 (505)
T ss_pred HHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHH
Confidence 99999999999999999999999999999988876543
No 59
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.64 E-value=1.2e-15 Score=111.02 Aligned_cols=138 Identities=12% Similarity=0.039 Sum_probs=116.1
Q ss_pred HHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh-hcchhhHhhhchHH
Q psy6141 6 LASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES-LGRRTTILSTGLPF 84 (144)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~g~r~~~~~~~~~~ 84 (144)
+..+.+....+...+......+.+|.+.++..++|.+..+.+.+.+.+..+..++.+++|+++|| +|||+++..+.+..
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~ 89 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL 89 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence 44455666677777777777888888876211289999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcch---hhhhchhhhhhcc
Q psy6141 85 IVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEV---RGTLGLLPTFLGN 143 (144)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~ 143 (144)
.++.+...++++++.+.+.+.+.|++.|...+...+.++|++|+++ |+++.++.+...+
T Consensus 90 ~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~n 151 (475)
T TIGR00924 90 MLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSIN 151 (475)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHH
Confidence 9999988888888888889999999999988999999999998764 7777777665443
No 60
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.64 E-value=3.3e-15 Score=106.25 Aligned_cols=130 Identities=18% Similarity=0.172 Sum_probs=108.5
Q ss_pred HHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcch-----hHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch
Q psy6141 8 SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEE-----ASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL 82 (144)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~ 82 (144)
.....++.+..+.......+.+|.+.+ +++.+..+ .+++.+...++..++.++.|+++||+|||+.+..+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 92 (408)
T PRK09874 16 LTVAWLGCFLTGAAFSLVMPFLPLYVE---QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSAL 92 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH---HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHH
Confidence 334455666777777788889999988 77777554 4788899999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 83 PFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
...++.......++++.+++.|++.|++.+ ..+....++.|.+|+++|+++.++.+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (408)
T PRK09874 93 GMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTG 150 (408)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHH
Confidence 888888888888899999999999998865 4566777889999999999988876543
No 61
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.63 E-value=1.4e-15 Score=109.54 Aligned_cols=130 Identities=12% Similarity=0.108 Sum_probs=104.0
Q ss_pred HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHH
Q psy6141 9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSF 88 (144)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 88 (144)
....+................|.+.+ .|.++++.++..+...++..++.++.|+++||+|||+.+..+.++..++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~p~~~~----~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~ 105 (438)
T TIGR00712 30 LGIFFGYAAYYLVRKNFALAMPYLVE----QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVM 105 (438)
T ss_pred HHHHHHHHHHHHHhccHHhhhHHHHH----cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHH
Confidence 33334444444444445555676554 48999999999999999999999999999999999999998888888877
Q ss_pred HHHHHh----chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 89 LLIALA----NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 89 ~~~~~~----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
...... ++++.+.+.|++.|++.+...+.....+.|++|+++|+++.++.+...
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~ 163 (438)
T TIGR00712 106 LLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAH 163 (438)
T ss_pred HHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHH
Confidence 766543 456777888999999999888888889999999999999999876543
No 62
>KOG0252|consensus
Probab=99.63 E-value=8.9e-16 Score=108.57 Aligned_cols=137 Identities=14% Similarity=0.095 Sum_probs=114.9
Q ss_pred cchhHHHHHHHHHHhhhhhhhhcccccccccccC-----CCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhh
Q psy6141 2 KSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQM-----GSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTT 76 (144)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~ 76 (144)
|++...+.+...+.+.++|+....+...|.+... .+.-++++...+.+..+..+|.++|+++.|++.||+|||++
T Consensus 37 w~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~v 116 (538)
T KOG0252|consen 37 WKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKV 116 (538)
T ss_pred HHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 5677788888999999999999998888776542 01122556677889999999999999999999999999999
Q ss_pred HhhhchHHHHHHHHHHHhc-------hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhh
Q psy6141 77 ILSTGLPFIVSFLLIALAN-------GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLP 138 (144)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~ 138 (144)
+...+++.+++.+.++.+. -.+++.+.|+++|+|.|+-+|...++.+|...++.||...+..
T Consensus 117 YG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaav 185 (538)
T KOG0252|consen 117 YGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAV 185 (538)
T ss_pred hhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEE
Confidence 9999999999998766531 2457888999999999999999999999999999999876653
No 63
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.62 E-value=1.6e-15 Score=110.70 Aligned_cols=138 Identities=11% Similarity=0.013 Sum_probs=113.9
Q ss_pred chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh-hcchhhHhhhc
Q psy6141 3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES-LGRRTTILSTG 81 (144)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~g~r~~~~~~~ 81 (144)
++.+..+.+....+...+..+...+.++.+.++ ++|.+.++..++.+.+.....+..+++|+++|| +||||+++.+.
T Consensus 11 ~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~--~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~ 88 (489)
T PRK10207 11 QQPRPFFMIFFVELWERFGYYGVQGILAVFFVK--QLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGA 88 (489)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHH
Confidence 456666677777777777778777778888763 789999999999999888888888999999999 99999999999
Q ss_pred hHHHHHHHHHHHhchHHH-HHHHHHHhhhhhhhhhhhHHHHHhhccCcch--hhhhchhhhhhc
Q psy6141 82 LPFIVSFLLIALANGVPM-ILAGRCVAGFCVGIASLALPVYLGETVQPEV--RGTLGLLPTFLG 142 (144)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~ 142 (144)
++..++.+.+.++.+.+. +.+.|.++|++.|...+...+.+.|.+|+++ |+++.++.+...
T Consensus 89 ~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~ 152 (489)
T PRK10207 89 IVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSI 152 (489)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHH
Confidence 999999999988766444 5578999999999999989999999999874 466666665544
No 64
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.61 E-value=7e-15 Score=106.49 Aligned_cols=116 Identities=18% Similarity=0.237 Sum_probs=99.2
Q ss_pred hcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHH
Q psy6141 23 AYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILA 102 (144)
Q Consensus 23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (144)
.......|.+.+ +++.++++.++..+...++..++.++.|+++||+|||+.++.+.++..++.+.+.++++++.+++
T Consensus 36 ~~~~~~~~~i~~---~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 112 (455)
T TIGR00892 36 KAVTVFFKELQQ---IFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYL 112 (455)
T ss_pred cchhhhHHHHHH---HhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHH
Confidence 445667788877 89999999999999999999999999999999999999999999899988888888888888765
Q ss_pred -HHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 103 -GRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 103 -~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
.|++.|++.+...+.....+.|++| ++|+++.++.+...
T Consensus 113 ~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~ 152 (455)
T TIGR00892 113 TAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGS 152 (455)
T ss_pred HHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcc
Confidence 5688999988766667778889886 78999998877554
No 65
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.60 E-value=5.1e-15 Score=103.80 Aligned_cols=114 Identities=17% Similarity=0.231 Sum_probs=100.3
Q ss_pred hcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHH
Q psy6141 23 AYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILA 102 (144)
Q Consensus 23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (144)
....+.+|.+.+ ++|.++++.++..+...++..++.++.|++.||+||||.+..+.+...++.... ..++.+.+++
T Consensus 17 ~~~~~~lp~l~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 92 (355)
T TIGR00896 17 TSVGPLLPQIRS---ALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFA 92 (355)
T ss_pred ccCcccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHH
Confidence 556788899888 899999999999999999999999999999999999999999888877777766 6788888899
Q ss_pred HHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 103 GRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 103 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
.|++.|++.+...+..+....|.+| ++|+++.+..+..
T Consensus 93 ~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 130 (355)
T TIGR00896 93 GTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMA 130 (355)
T ss_pred HHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHH
Confidence 9999999999888778888889886 5789988887653
No 66
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.60 E-value=4.5e-15 Score=103.92 Aligned_cols=135 Identities=15% Similarity=0.019 Sum_probs=109.7
Q ss_pred hhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchH
Q psy6141 4 AVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLP 83 (144)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~ 83 (144)
+.+..+.................+..+.+.+ ++++|++|.+++.....+...+..++.|.+.||+|.|+....+.++
T Consensus 12 ~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~---~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l 88 (417)
T COG2223 12 ARRNLWLSTLAFDVGFMVWTLFSPLGVFIKS---DFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLL 88 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---ccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHH
Confidence 3444444444444444445556666666666 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc---hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhcc
Q psy6141 84 FIVSFLLIALAN---GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGN 143 (144)
Q Consensus 84 ~~~~~~~~~~~~---~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 143 (144)
..+..+...++. +++.+++.+.+.|++.+. .+....++++++|+|++|.++|++. .+|
T Consensus 89 ~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~qG~AlGI~g-~GN 149 (417)
T COG2223 89 LLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEKQGLALGIAG-AGN 149 (417)
T ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHhcccce-ehcccccccccCChhhhhHHHHHhc-ccc
Confidence 999998888864 445999999999999554 5667789999999999999999987 544
No 67
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.60 E-value=1e-15 Score=114.54 Aligned_cols=131 Identities=9% Similarity=0.023 Sum_probs=112.6
Q ss_pred HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHH
Q psy6141 9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSF 88 (144)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 88 (144)
+..++..+............+|.+.+ +++++..+.+++.+.+.+++.++.++.+++.||.||||.+.++.++.+++.
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek---~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ 112 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIER---RFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGS 112 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhh---hhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHH
Confidence 33344555555666777778888887 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc---------------------------------------------------hHHHHHHHHHHhhhhhhhhhhh
Q psy6141 89 LLIALAN---------------------------------------------------GVPMILAGRCVAGFCVGIASLA 117 (144)
Q Consensus 89 ~~~~~~~---------------------------------------------------~~~~~~~~~~~~g~~~g~~~~~ 117 (144)
++.++.+ .+..++++|+++|++.+...+.
T Consensus 113 ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~ 192 (633)
T TIGR00805 113 FLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPL 192 (633)
T ss_pred HHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhc
Confidence 8887642 2446778999999999999999
Q ss_pred HHHHHhhccCcchhhhhchhhhhhc
Q psy6141 118 LPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 118 ~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
..+++.|++|+++|++..++.+...
T Consensus 193 ~~~~i~d~~~~~~~~~~~~i~~~~~ 217 (633)
T TIGR00805 193 GISYIDDFAKSKNSPLYIGILESIA 217 (633)
T ss_pred CchhhhccCCccccHHHHHHHHHHH
Confidence 9999999999999999998877654
No 68
>PTZ00207 hypothetical protein; Provisional
Probab=99.57 E-value=2.2e-14 Score=106.04 Aligned_cols=134 Identities=15% Similarity=0.080 Sum_probs=104.2
Q ss_pred chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch
Q psy6141 3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL 82 (144)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~ 82 (144)
++|.............+. ...+..+.|.+.+ ++|.|..+.+++.+.. ......+++.|++.||+|+|+++.++.+
T Consensus 25 ~Rw~~lva~~~~~~~~g~-~y~fsv~s~~L~~---~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~l 99 (591)
T PTZ00207 25 RRFALLVLGAFCSICTSF-MYAFNLISGAMQA---RYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMT 99 (591)
T ss_pred chHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 455544444433333332 3344455677766 8999999999887763 3445677789999999999999999999
Q ss_pred HHHHHHHHHHHh------chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 83 PFIVSFLLIALA------NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 83 ~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
...++.+...++ ++++.+.+.|.+.|++.+...+.....+.++|| ++||++.++.....
T Consensus 100 l~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~ 164 (591)
T PTZ00207 100 VFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFT 164 (591)
T ss_pred HHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHH
Confidence 999999988886 688999999999999999888888889999997 67899998877654
No 69
>KOG0569|consensus
Probab=99.57 E-value=2.9e-14 Score=102.87 Aligned_cols=137 Identities=26% Similarity=0.455 Sum_probs=106.9
Q ss_pred HHHHHHHHHHhhhhhhhhcccccccccccC-----CCCCC--CCcch----hHHHHHHHHHHHHHHHHhhHHHHhhhcch
Q psy6141 6 LASLTVSLGSMIVGFASAYTSPAIPSMNQM-----GSRVS--PTEEE----ASWIGSLMPLSALFGGMAGGPLIESLGRR 74 (144)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----~~~~~--~~~~~----~~~~~~~~~~~~~i~~~~~g~l~d~~g~r 74 (144)
......+++++-.+|.....++-.+.+.+- .+.++ .++++ .+.+.+.+.+|.++|++..+.++||+|||
T Consensus 11 ~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK 90 (485)
T KOG0569|consen 11 LAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRK 90 (485)
T ss_pred HHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 344455566667777777776655443331 12333 33332 46678899999999999999999999999
Q ss_pred hhHhhhchHHHHHHHHHHH---hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 75 TTILSTGLPFIVSFLLIAL---ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
..+.+..++...+...+.. .+++.+++++|++.|+..|......+.+++|..|++.||....+.+...
T Consensus 91 ~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~ 161 (485)
T KOG0569|consen 91 NALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGV 161 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHH
Confidence 9999888888887776655 5788899999999999999999999999999999999999888876654
No 70
>KOG0255|consensus
Probab=99.56 E-value=1.2e-14 Score=106.81 Aligned_cols=100 Identities=29% Similarity=0.292 Sum_probs=94.3
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhh
Q psy6141 38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLA 117 (144)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 117 (144)
....+........+.+.+|.++|.+++|+++||+|||++++.+.+...++.+..++++|++.+.+.|++.|++.+.....
T Consensus 112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~ 191 (521)
T KOG0255|consen 112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTV 191 (521)
T ss_pred eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHH
Confidence 44556677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCcchhhhhchh
Q psy6141 118 LPVYLGETVQPEVRGTLGLL 137 (144)
Q Consensus 118 ~~~~~~~~~~~~~r~~~~~~ 137 (144)
...+.+|++++++|+.+..+
T Consensus 192 ~~~~~~E~~~~~~R~~~~~~ 211 (521)
T KOG0255|consen 192 GFGLVAEIVSPKQRGLALTL 211 (521)
T ss_pred hHhhheeecCcchhhHHHHH
Confidence 99999999999999998887
No 71
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.56 E-value=7.8e-15 Score=104.99 Aligned_cols=124 Identities=20% Similarity=0.159 Sum_probs=102.1
Q ss_pred HhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH-
Q psy6141 15 SMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL- 93 (144)
Q Consensus 15 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~- 93 (144)
.+..........+..|.+.+ +.+.++.+.+++.+...++..+++++.|+++||+|||+.+..+.++..++......
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~ 102 (417)
T PRK10489 26 RFISIFGLGLLGVAVPVQIQ---MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALN 102 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHH
Confidence 44444555666667888877 77788999999999999999999999999999999999998877776666554432
Q ss_pred ----hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 94 ----ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 94 ----~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
.++++.+.+.|++.|++.+...+.....+.|..|+++|+++.++.+..
T Consensus 103 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (417)
T PRK10489 103 AFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLT 154 (417)
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHH
Confidence 457788889999999998888888888999999999999988887654
No 72
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.55 E-value=4e-14 Score=99.61 Aligned_cols=119 Identities=14% Similarity=0.079 Sum_probs=97.2
Q ss_pred HHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhh-hchHHHHHHHHH
Q psy6141 13 LGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILS-TGLPFIVSFLLI 91 (144)
Q Consensus 13 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~-~~~~~~~~~~~~ 91 (144)
+..+..+.......+.+|.+.++ ++|.++++.+++.+...+...+.+++.|+++||+||||.++. +.....++....
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~--~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSE--EVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHc--ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH
Confidence 34566677777888888887642 799999999999999999999999999999999999987654 455555666777
Q ss_pred HHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhh
Q psy6141 92 ALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGT 133 (144)
Q Consensus 92 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~ 133 (144)
..+++++.+++.|++.|.+.+...+....+..|..|+++|++
T Consensus 82 ~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~ 123 (375)
T TIGR00899 82 AWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREA 123 (375)
T ss_pred HhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhh
Confidence 788899988889999888877777888888889888777764
No 73
>KOG3764|consensus
Probab=99.54 E-value=1.1e-14 Score=101.57 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=94.5
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHH
Q psy6141 40 SPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALP 119 (144)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 119 (144)
+-.+++.|++.....+..++.+++.|.+.||+|+|..++++......+.+++++.+++++++++|.++|++.+.......
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgl 181 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGL 181 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhH
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCcc-hhhhhchhhhhhc
Q psy6141 120 VYLGETVQPE-VRGTLGLLPTFLG 142 (144)
Q Consensus 120 ~~~~~~~~~~-~r~~~~~~~~~~~ 142 (144)
++++|.+|++ +|++++|..-.+.
T Consensus 182 amlAd~f~~d~er~~vmGialgfi 205 (464)
T KOG3764|consen 182 AMLADVFPEDNERGSVMGIALGFI 205 (464)
T ss_pred HHHHHHcccchhhhHHHHHHHHHH
Confidence 9999999975 5799988865543
No 74
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.54 E-value=2.4e-16 Score=113.61 Aligned_cols=131 Identities=27% Similarity=0.417 Sum_probs=107.2
Q ss_pred HHHHhhhhhhhhcccccccccccCC-CCCCC-------CcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchH
Q psy6141 12 SLGSMIVGFASAYTSPAIPSMNQMG-SRVSP-------TEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLP 83 (144)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~ 83 (144)
.++.+..+++........+...... ...+. ++.+.++..+...+|..+|.++.|.++||+|||+.+..+.++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~ 85 (451)
T PF00083_consen 6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL 85 (451)
T ss_pred HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 4455777777777655554443110 01111 223568899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc---hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 84 FIVSFLLIALAN---GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 84 ~~~~~~~~~~~~---~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
..++.++..+++ +++.+.++|++.|++.|...+..+.++.|..|+++|++..++.+...
T Consensus 86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~ 147 (451)
T PF00083_consen 86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFW 147 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999998 99999999999999999999999999999999999999888777654
No 75
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.53 E-value=1e-13 Score=97.26 Aligned_cols=126 Identities=15% Similarity=0.223 Sum_probs=99.0
Q ss_pred HhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHH-HHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH
Q psy6141 15 SMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMP-LSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL 93 (144)
Q Consensus 15 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 93 (144)
.+.............|.+.+ +.|.++++.+.+..... ++.+++.+++|++.||+|||+.+..+.+...+......+
T Consensus 218 ~~~~~~~~~~~~~~~~~~l~---~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~ 294 (356)
T TIGR00901 218 IVLYKLGDSAATVLTTLFLL---DMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVW 294 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455566788877 67889999888777655 678899999999999999999988887777766554443
Q ss_pred h-----------chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhcc
Q psy6141 94 A-----------NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGN 143 (144)
Q Consensus 94 ~-----------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 143 (144)
. ++.+.+....++.+++.+...+...++.+|.+|+|+|++..++.+...+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 295 LASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 2 3456677778888999999999999999999999999999999887654
No 76
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.53 E-value=5.5e-14 Score=102.25 Aligned_cols=139 Identities=15% Similarity=0.082 Sum_probs=106.6
Q ss_pred chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhh-cchhhHhhhc
Q psy6141 3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESL-GRRTTILSTG 81 (144)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-g~r~~~~~~~ 81 (144)
++......+........+..+.+..++|.+..+ ++|.++.+.+.+.+.+.....++.+++|+++||+ ||||.+..+.
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~--~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~ 83 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTN--QLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGA 83 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 344555566666667777777777788888763 6899999999999999999999999999999999 9999999999
Q ss_pred hHHHHHHHHHHHhc-hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcc--hhhhhchhhhhhcc
Q psy6141 82 LPFIVSFLLIALAN-GVPMILAGRCVAGFCVGIASLALPVYLGETVQPE--VRGTLGLLPTFLGN 143 (144)
Q Consensus 82 ~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~ 143 (144)
++..++.+.+...+ +...+.+...+..++.|...+..+++++|.+|++ +|.++.++.+...+
T Consensus 84 il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~n 148 (493)
T PRK15462 84 LLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGN 148 (493)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHH
Confidence 99988877665533 2233444444455666666677788999999976 68888888876654
No 77
>KOG2615|consensus
Probab=99.51 E-value=9.6e-14 Score=96.46 Aligned_cols=102 Identities=19% Similarity=0.217 Sum_probs=90.9
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHH
Q psy6141 40 SPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALP 119 (144)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 119 (144)
+.+....|++.+.+.++..++++.+|.++||+|||.+++.+++..+++..+.+.++|+..+..+|++.|+..|-. .+.-
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl-~v~r 142 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNL-SVIR 142 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-HHHH
Confidence 345567899999999999999999999999999999999999999999999999999977777799999998765 5677
Q ss_pred HHHhhccCcchhhhhchhhhhhc
Q psy6141 120 VYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 120 ~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
++++|+.++|+|+.+++......
T Consensus 143 AiisdV~sek~r~l~ms~v~~a~ 165 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGTAF 165 (451)
T ss_pred HHHHhhcChhhccceeeeeehhh
Confidence 89999999999999998876554
No 78
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.49 E-value=3.6e-13 Score=95.99 Aligned_cols=116 Identities=19% Similarity=0.172 Sum_probs=96.3
Q ss_pred cccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHH
Q psy6141 24 YTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAG 103 (144)
Q Consensus 24 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (144)
....+.|.+.+ +.|.++.+.+...+...++.+++.++.|++.||+|||+.+..+.+...++.......++.+.+.+.
T Consensus 238 ~~~~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (406)
T PRK11551 238 FLLNWLPSLLV---GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLA 314 (406)
T ss_pred HHHHHHHHHHH---hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 33445678777 678899999999999999999999999999999999999887766666666666666777777777
Q ss_pred HHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 104 RCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 104 ~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
.++.|++.+...+....+..|.+|+++|++..++.+...
T Consensus 315 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 353 (406)
T PRK11551 315 GFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVG 353 (406)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhh
Confidence 788888887778888899999999999999999887654
No 79
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.48 E-value=4.8e-13 Score=97.76 Aligned_cols=119 Identities=15% Similarity=0.126 Sum_probs=89.8
Q ss_pred hhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHH---HHHhch
Q psy6141 20 FASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLL---IALANG 96 (144)
Q Consensus 20 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~---~~~~~~ 96 (144)
........+.|.+.++ +++.+..+.........++..++.+..|+++||+|||+.+..+.+...+.... ...+++
T Consensus 264 ~~~~~~~~~~p~~l~~--~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (490)
T PRK10642 264 VTYYMLLTYMPSYLSH--NLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNV 341 (490)
T ss_pred HHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444455678887752 67888877788888889999999999999999999999888776544433322 122345
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141 97 VPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF 140 (144)
Q Consensus 97 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 140 (144)
...+.+.+++.|++.+...+....+..|.+|++.|+++.++.+.
T Consensus 342 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~ 385 (490)
T PRK10642 342 IGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFN 385 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHH
Confidence 66777888888888777777778888999999999998886443
No 80
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.47 E-value=4.9e-13 Score=92.76 Aligned_cols=128 Identities=30% Similarity=0.396 Sum_probs=108.7
Q ss_pred HHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchh-hHhhhchHHHHHHHHH
Q psy6141 13 LGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRT-TILSTGLPFIVSFLLI 91 (144)
Q Consensus 13 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~-~~~~~~~~~~~~~~~~ 91 (144)
...+.............|.+.++ ..+.++.+.+.......++..++.++.+++.||+|||+ .+..+.....++....
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 259 (352)
T cd06174 182 LAFFLLSFGYYGLLTYLPLYLQE--VLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLL 259 (352)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33344444455555667777762 44889999999999999999999999999999999999 8888999989988888
Q ss_pred HHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 92 ALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 92 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
...++.+...+...+.|++.+...+....+..|..|+++|++..++.+...
T Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (352)
T cd06174 260 ALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFG 310 (352)
T ss_pred HHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 888888888899999999999999999999999999999999998877653
No 81
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.47 E-value=9e-14 Score=97.96 Aligned_cols=122 Identities=21% Similarity=0.237 Sum_probs=90.6
Q ss_pred hhhhhhcccccccccccCCCC-CCCCcchhHHHHHH-----HHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHH
Q psy6141 18 VGFASAYTSPAIPSMNQMGSR-VSPTEEEASWIGSL-----MPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLI 91 (144)
Q Consensus 18 ~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~ 91 (144)
+.++........+.+.++ . .+.++++.+...+. ..++..+++++.|+++||+|||+.+..+.++..++....
T Consensus 5 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 82 (394)
T TIGR00883 5 EWFDFYLYGFAAVLVFHT--FFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI 82 (394)
T ss_pred hHHHHHHHHHHHHHHHHH--hcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444441 2 12344555444332 334445789999999999999999999999999999888
Q ss_pred HHhchHH--------HHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 92 ALANGVP--------MILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 92 ~~~~~~~--------~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
.++++++ .+++.|+++|++.+...+....++.|++|+++|++..+..+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 140 (394)
T TIGR00883 83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVG 140 (394)
T ss_pred hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHH
Confidence 8887764 4788999999999999999999999999999999888776543
No 82
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.46 E-value=5.9e-13 Score=100.98 Aligned_cols=95 Identities=21% Similarity=0.201 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccC
Q psy6141 48 WIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQ 127 (144)
Q Consensus 48 ~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ 127 (144)
....+..++.+++.++.|+++||+|||+.++.+.++.+++.+...+.++...+++.+++.|++.+...+....+++|++|
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~P 678 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYP 678 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34566778899999999999999999999999999999988888888877777888888888888888889999999999
Q ss_pred cchhhhhchhhhhhc
Q psy6141 128 PEVRGTLGLLPTFLG 142 (144)
Q Consensus 128 ~~~r~~~~~~~~~~~ 142 (144)
+++|+++.|+.+...
T Consensus 679 t~~Rgta~Gi~~~~~ 693 (742)
T TIGR01299 679 SDKRATAFGFLNALC 693 (742)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887654
No 83
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.46 E-value=7.8e-13 Score=92.54 Aligned_cols=136 Identities=20% Similarity=0.160 Sum_probs=120.7
Q ss_pred hhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchH
Q psy6141 4 AVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLP 83 (144)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~ 83 (144)
.......+....++.++......+.+|.+.+ .++++..|.+.++..+..++.+..++.+++.+|+|+|+.++.+..+
T Consensus 11 ~~~~~v~~t~lFfl~G~~~~l~diLip~l~~---~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l 87 (422)
T COG0738 11 VKLAFVLLTSLFFLWGFITCLNDILIPHLKE---VFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLL 87 (422)
T ss_pred ceeHHHHHHHHHHHHHHHhhcchhhHHHHHH---HhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHH
Confidence 3445566677778888889999999999998 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH---HhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 84 FIVSFLLIA---LANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 84 ~~~~~~~~~---~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
.+++..+.. ...++..++.+.++.|.|.+......+.+++...|++...+-+++.+.+.
T Consensus 88 ~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn 149 (422)
T COG0738 88 YAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFN 149 (422)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhh
Confidence 999988874 45788899999999999999999999999999999977777777766554
No 84
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.46 E-value=9.7e-13 Score=93.25 Aligned_cols=119 Identities=21% Similarity=0.183 Sum_probs=90.4
Q ss_pred hhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHH-HHHHhchHHHH
Q psy6141 22 SAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFL-LIALANGVPMI 100 (144)
Q Consensus 22 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~-~~~~~~~~~~~ 100 (144)
........|.+.++ +.+.+.++.+.+.+...++..++.++.+++.||+|||+.+..+.+...+... .....++.+.+
T Consensus 254 ~~~~~~~~~~~~~~--~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (405)
T TIGR00891 254 SHPIQDLLPTYLKA--DLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVL 331 (405)
T ss_pred HhhhhhhhHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHH
Confidence 33444556776652 6788999999999999999999999999999999999998877665533332 22334555556
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 101 LAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 101 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
.+..++.+.+.+...+..+.+++|.+|+++|+++.|+.+...
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 373 (405)
T TIGR00891 332 GLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLG 373 (405)
T ss_pred HHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHH
Confidence 666677777766667778889999999999999999876543
No 85
>KOG2532|consensus
Probab=99.45 E-value=2.8e-13 Score=98.06 Aligned_cols=104 Identities=25% Similarity=0.282 Sum_probs=95.1
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhc--hHHHHHHHHHHhhhhhhhhh
Q psy6141 38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALAN--GVPMILAGRCVAGFCVGIAS 115 (144)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~g~~~ 115 (144)
+++.++++.+++.+..+.|+++++++.|++.||+|-|+++..+.++.++..++...+. +++.+++.|+++|++.|...
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~ 146 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLF 146 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHH
Confidence 6788999999999999999999999999999999999999999999999988887653 45577899999999999999
Q ss_pred hhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 116 LALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 116 ~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
+......++|.|++||++..++....
T Consensus 147 pa~~~i~~~W~P~~Ers~~~ail~~g 172 (466)
T KOG2532|consen 147 PAIGSILAKWAPPNERSTFIAILTAG 172 (466)
T ss_pred hhhhceeeeECCHHHHHHHHHHHHHH
Confidence 99999999999999999988876654
No 86
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.45 E-value=5.3e-13 Score=97.82 Aligned_cols=132 Identities=11% Similarity=0.031 Sum_probs=101.7
Q ss_pred HHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh-hcchhhHhhhchHHHH
Q psy6141 8 SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES-LGRRTTILSTGLPFIV 86 (144)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~g~r~~~~~~~~~~~~ 86 (144)
.+.+....+...+..+...+.+|.+.++ ++|.++++.+++.+.+........+++|+++|| +|||+.+..+.+...+
T Consensus 23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~--~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~i 100 (500)
T PRK09584 23 FYLIFSIELWERFGYYGLQGIMAVYLVK--QLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAI 100 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 4455566666666666677778888752 789999888888777766666666789999999 5999999999999999
Q ss_pred HHHHHHHhc-hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcch--hhhhchhhhhh
Q psy6141 87 SFLLIALAN-GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEV--RGTLGLLPTFL 141 (144)
Q Consensus 87 ~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~ 141 (144)
+...+.+++ +.+.+.+.+.++|++.|...+....++.|++|+++ |..+.++.+..
T Consensus 101 g~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~ 158 (500)
T PRK09584 101 GYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMS 158 (500)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHH
Confidence 888887764 45667778899999999888888899999998654 34456554443
No 87
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.44 E-value=2e-13 Score=83.10 Aligned_cols=93 Identities=23% Similarity=0.288 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcc
Q psy6141 50 GSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPE 129 (144)
Q Consensus 50 ~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~ 129 (144)
.+...++..++.++.|++.||+|||+.+..+.....++.+.....++.+.+.+.+++.|++.+...+....+..|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 34567788999999999999999999999988888888888888888999999999999999999999999999999999
Q ss_pred hhhhhchhhhhhc
Q psy6141 130 VRGTLGLLPTFLG 142 (144)
Q Consensus 130 ~r~~~~~~~~~~~ 142 (144)
+|++..++.+...
T Consensus 84 ~~~~~~~~~~~~~ 96 (141)
T TIGR00880 84 ERGVALGLMSAGI 96 (141)
T ss_pred hhhHHHHHHHHhH
Confidence 9999988876543
No 88
>TIGR00895 2A0115 benzoate transport.
Probab=99.44 E-value=1.4e-12 Score=92.09 Aligned_cols=123 Identities=19% Similarity=0.163 Sum_probs=92.7
Q ss_pred hhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhch
Q psy6141 17 IVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANG 96 (144)
Q Consensus 17 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~ 96 (144)
...........+.|.+.+ +.+.++++.+...+...++..++.++.+++.||+|||+......+............++
T Consensus 261 ~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (398)
T TIGR00895 261 MLLVGVYFLTNWLPKLMV---ELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFS 337 (398)
T ss_pred HHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence 333333444455676666 78888889999999999999999999999999999985544443333333333333556
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 97 VPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 97 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
.+...+..++.|++.+...+....+..|.+|+++|+++.++.+...
T Consensus 338 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 383 (398)
T TIGR00895 338 PTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIG 383 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 6677778889999999999999999999999999999998876643
No 89
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.42 E-value=8.8e-13 Score=104.47 Aligned_cols=100 Identities=19% Similarity=0.035 Sum_probs=86.0
Q ss_pred cchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHH---HhchHHHHHHHHHHhhhhhhhhhhhHH
Q psy6141 43 EEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIA---LANGVPMILAGRCVAGFCVGIASLALP 119 (144)
Q Consensus 43 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~g~~~~~~~ 119 (144)
....+++.+++.++..++.+++|+++||+|||++++.+.++.++..+... ..++++.+++.|++.|++.+...+...
T Consensus 46 ~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 125 (1146)
T PRK08633 46 VILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKY 125 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHH
Confidence 34568889999999999999999999999999999988766555554433 357789999999999999999999999
Q ss_pred HHHhhccCcchhhhhchhhhhhc
Q psy6141 120 VYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 120 ~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
+++.|++|+++|++++++.+...
T Consensus 126 ~~i~~~~~~~~r~~~~~~~~~~~ 148 (1146)
T PRK08633 126 GIIPELVGKENLSRANGLLEAFT 148 (1146)
T ss_pred hhhHHhcCcccchhhhhHHHHHH
Confidence 99999999999999999887654
No 90
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.42 E-value=2e-12 Score=93.98 Aligned_cols=133 Identities=17% Similarity=0.106 Sum_probs=93.5
Q ss_pred HHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHH
Q psy6141 8 SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVS 87 (144)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 87 (144)
.+...+..+...........+.|.+.++ ++|.+..+.++..+...++..++.+.+|+++||+|||+..........+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~--~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~ 337 (467)
T PRK09556 260 IWLLCFANIFLYIVRIGIDNWSPVYAFQ--ELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALII 337 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 3444444455444445566778988762 68999999999999999999999999999999999998776544433333
Q ss_pred HHH--HHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 88 FLL--IALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 88 ~~~--~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
... ....++.+...+.+++.|+..............|.+|+++|+++.|+.+...
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g 394 (467)
T PRK09556 338 FTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFA 394 (467)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Confidence 222 2233456566677777776543333334467789999999999999887654
No 91
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.41 E-value=2.2e-12 Score=90.12 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=96.7
Q ss_pred ccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhch-HHHHHHHHH
Q psy6141 27 PAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANG-VPMILAGRC 105 (144)
Q Consensus 27 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 105 (144)
...|.+.++ .++.++.+.+.......++..++.++.+++.||.+||+.+..+.....+......+.++ .+.+.+..+
T Consensus 232 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (365)
T TIGR00900 232 ALFPYVQSK--YLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWF 309 (365)
T ss_pred HHhHHHHHH--HhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Confidence 456777651 47888999999999999999999999999999999999988877777777666666664 777788889
Q ss_pred HhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 106 VAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 106 ~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
+.|++.+...+....+..|..|+|+|++..++.+...
T Consensus 310 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 346 (365)
T TIGR00900 310 AIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLS 346 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999999988999999999999999999999887654
No 92
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.41 E-value=1.2e-12 Score=91.74 Aligned_cols=112 Identities=13% Similarity=0.013 Sum_probs=89.9
Q ss_pred cccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchH--HHHHHHHH
Q psy6141 28 AIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGV--PMILAGRC 105 (144)
Q Consensus 28 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 105 (144)
..+.+.+ +.+.++++.+...+...++..++.++.|++.||+|||+.+..+.....++.......++. ..+.....
T Consensus 227 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (377)
T TIGR00890 227 LYKPYGQ---SLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVA 303 (377)
T ss_pred HHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 4455555 678888888999999999999999999999999999999988888888777766665532 23445567
Q ss_pred HhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 106 VAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 106 ~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
+.|++.+...+..+.+..|.+|+++|++..++.+...
T Consensus 304 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 340 (377)
T TIGR00890 304 LVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAK 340 (377)
T ss_pred HHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHH
Confidence 7788888777777889999999999999998876543
No 93
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.41 E-value=1.4e-12 Score=93.02 Aligned_cols=125 Identities=16% Similarity=0.181 Sum_probs=101.5
Q ss_pred HHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhh-----cchh-hHhhhchHHH
Q psy6141 12 SLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESL-----GRRT-TILSTGLPFI 85 (144)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----g~r~-~~~~~~~~~~ 85 (144)
...++..+.........+|.+.+ +.|.+.++++++...... .+.++++|+++||+ |||| .+..+.+..+
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~---~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~ 79 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMT---VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLA 79 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHH
Confidence 44566777777888888999998 889999999998777665 69999999999999 8876 5667677777
Q ss_pred HHHHHHHHh---chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 86 VSFLLIALA---NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 86 ~~~~~~~~~---~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
++.....+. ++++.+.+..++.+...+...+...+++.|++|+|+|+++.++....
T Consensus 80 l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g 138 (402)
T PRK11902 80 ASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLG 138 (402)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHH
Confidence 666666665 35666777777788888888899999999999999999988876653
No 94
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.40 E-value=1.8e-12 Score=94.82 Aligned_cols=130 Identities=17% Similarity=0.238 Sum_probs=100.5
Q ss_pred HHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhh-----cchhh-Hhhh
Q psy6141 7 ASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESL-----GRRTT-ILST 80 (144)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----g~r~~-~~~~ 80 (144)
.........+..+.......+.+|.+.+ +.+.+.++.+... ...... +.++++|+++||+ ||||. +..+
T Consensus 13 ~~~~~~~l~~~~gl~~~~~~~~l~~~l~---~~g~~~~~ig~~~-~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~ 87 (491)
T PRK11010 13 NSAILLILGFASGLPLALTSGTLQAWMT---VENIDLKTIGFFS-LVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLAT 87 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCHHHHHHHH-HHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHH
Confidence 3445555566666667777788898888 7788888888863 233333 6899999999999 99886 5566
Q ss_pred chHHHHHHHHHHHh---chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 81 GLPFIVSFLLIALA---NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
.+...++...+++. ++++.+.+.+++.+++.+...+...++..|++|+|+|+++.++....
T Consensus 88 ~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g 151 (491)
T PRK11010 88 QLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLG 151 (491)
T ss_pred HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHH
Confidence 66666666666554 46778888999999999999999999999999999999988877654
No 95
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.39 E-value=3.2e-12 Score=91.01 Aligned_cols=114 Identities=13% Similarity=0.096 Sum_probs=87.5
Q ss_pred ccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHH
Q psy6141 25 TSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGR 104 (144)
Q Consensus 25 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (144)
.....|.+.++ +++.++.+.+.+.+...++.+++.++.|+++||+|||+.+..+.....+........++.+.+++.+
T Consensus 235 ~~~~~p~~l~~--~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 312 (393)
T PRK15011 235 YIINMPLFIIN--ELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQ 312 (393)
T ss_pred HHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33457776652 6788888888888887888889999999999999999988776665555544444566777777788
Q ss_pred HHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 105 CVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 105 ~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
++.+++.|...+..+.+.+|.+|+ +|+++.++++..
T Consensus 313 ~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~ 348 (393)
T PRK15011 313 LLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNT 348 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHH
Confidence 888888777777777888999986 488888876553
No 96
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.39 E-value=4.1e-12 Score=89.53 Aligned_cols=126 Identities=15% Similarity=0.077 Sum_probs=92.9
Q ss_pred HHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHH-H-
Q psy6141 12 SLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSF-L- 89 (144)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~-~- 89 (144)
....+...........+.|.+.++ +.+.++++.+.......++..++.++.|++.||+|||+.+........+.. .
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 302 (394)
T TIGR00883 225 LGLVIATTTTFYLITTYLPTYLTQ--TLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPL 302 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 333444444444555667877742 678888899999999999999999999999999999998775544443322 1
Q ss_pred HHHH--hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhh
Q psy6141 90 LIAL--ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPT 139 (144)
Q Consensus 90 ~~~~--~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~ 139 (144)
.... .++.+.......+.|++.+...+.....+.|.+|+++|+++.++.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 354 (394)
T TIGR00883 303 LMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAY 354 (394)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehh
Confidence 1222 2456666677788888888888889999999999999999888743
No 97
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.38 E-value=7.4e-12 Score=88.86 Aligned_cols=123 Identities=12% Similarity=0.071 Sum_probs=105.9
Q ss_pred HHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHH
Q psy6141 13 LGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIA 92 (144)
Q Consensus 13 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 92 (144)
...+.............|.+.+ +.|.++.+.+.......++.++..++.+++.||+|+|+.+..+.+...+......
T Consensus 212 ~~~~l~~~~~~~~~~~~~~~l~---~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~ 288 (382)
T TIGR00902 212 AAVCLIQGAHAAYYGFSAIYWQ---AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIG 288 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 3334334444455556787877 7899999999999999999999999999999999999999999999999988888
Q ss_pred HhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhh
Q psy6141 93 LANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPT 139 (144)
Q Consensus 93 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~ 139 (144)
+.++.+.++....+.|+..+...+....++++. |+++|+++.++++
T Consensus 289 ~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~ 334 (382)
T TIGR00902 289 AIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYN 334 (382)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHH
Confidence 899999999999999999999999999999998 9999998888765
No 98
>PRK15075 citrate-proton symporter; Provisional
Probab=99.37 E-value=5.5e-12 Score=90.92 Aligned_cols=120 Identities=18% Similarity=0.160 Sum_probs=84.8
Q ss_pred hhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHH-HH---Hh
Q psy6141 19 GFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLL-IA---LA 94 (144)
Q Consensus 19 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~-~~---~~ 94 (144)
.........+.|.+.++ +.|.+.++.++......++..++.++.|+++||+|||+.+..+.....+.... .. ..
T Consensus 251 ~~~~~~~~~~~p~~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 328 (434)
T PRK15075 251 TVSFYLITVYTPTFGKT--VLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAA 328 (434)
T ss_pred HHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33344455668888762 57888888888888899999999999999999999999887654443322211 11 12
Q ss_pred chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141 95 NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF 140 (144)
Q Consensus 95 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 140 (144)
++.........+.+++.+...+....+..|.+|+++|+++.++.+.
T Consensus 329 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~ 374 (434)
T PRK15075 329 PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYS 374 (434)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHH
Confidence 3333344445556667676666677889999999999999887543
No 99
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.36 E-value=2.7e-12 Score=90.09 Aligned_cols=114 Identities=14% Similarity=0.225 Sum_probs=87.4
Q ss_pred hcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhh-----cchhhH-hhhchHHHHHHHHHHHh--
Q psy6141 23 AYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESL-----GRRTTI-LSTGLPFIVSFLLIALA-- 94 (144)
Q Consensus 23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----g~r~~~-~~~~~~~~~~~~~~~~~-- 94 (144)
....+..|.+.+ ++|.|.++.++.... .+...+ ++++|++.||+ ||||.+ +.+.+..++......+.
T Consensus 5 ~~~~~~~~~~~~---~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~ 79 (356)
T TIGR00901 5 GLVGNTLPYWLR---SKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP 79 (356)
T ss_pred hhHHhHHHHHHH---HcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc
Confidence 345567788888 899999999998655 444444 99999999998 898975 55666666665555554
Q ss_pred -chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 95 -NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 95 -~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
.+.+.+....++.+.+.+...+...+++.|++|+|+|+++.++....
T Consensus 80 ~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~ 127 (356)
T TIGR00901 80 STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVG 127 (356)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHH
Confidence 35556666677788888888889999999999999999998886654
No 100
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.36 E-value=1.1e-11 Score=89.38 Aligned_cols=119 Identities=16% Similarity=0.010 Sum_probs=79.4
Q ss_pred hhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHH--H--hchH
Q psy6141 22 SAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIA--L--ANGV 97 (144)
Q Consensus 22 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~--~--~~~~ 97 (144)
......+.|.+.++ +.+.+.++.+...+...+...++.++.|+++||+|||+.+....+...+...... . .++.
T Consensus 259 ~~~~~~~lp~~l~~--~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (432)
T PRK10406 259 FYTFTTYMQKYLVN--TAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSP 336 (432)
T ss_pred HHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 33445567887752 5788888888888888888889999999999999999987766554433332221 1 1223
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 98 PMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 98 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
........+.....+...+..+.+.+|.+|+|+|+++.|+.+...
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g 381 (432)
T PRK10406 337 YAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVA 381 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHH
Confidence 222222222223334444556778899999999999999977643
No 101
>PRK09952 shikimate transporter; Provisional
Probab=99.34 E-value=1.6e-11 Score=88.72 Aligned_cols=116 Identities=12% Similarity=-0.021 Sum_probs=81.8
Q ss_pred hcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH---h-chHH
Q psy6141 23 AYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL---A-NGVP 98 (144)
Q Consensus 23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~---~-~~~~ 98 (144)
.....+.|.+.++ +.+.+.++...+.........++.++.|+++||+|||+.+..+.+...+....... . ++.+
T Consensus 267 ~~~~~~~~~y~~~--~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (438)
T PRK09952 267 YIVTAFALNYSTQ--NLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFW 344 (438)
T ss_pred HHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 3344566766652 67777766555555666777889999999999999999988776655554433322 2 2334
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141 99 MILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF 140 (144)
Q Consensus 99 ~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 140 (144)
.+.+..++.+++.+...+..+.+++|.+|+++|+++.++.+.
T Consensus 345 ~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~ 386 (438)
T PRK09952 345 IVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQ 386 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHH
Confidence 444455666788787778888999999999999888777543
No 102
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.32 E-value=2.3e-11 Score=90.08 Aligned_cols=114 Identities=20% Similarity=0.287 Sum_probs=95.4
Q ss_pred hhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHH
Q psy6141 21 ASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMI 100 (144)
Q Consensus 21 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (144)
........+|.+.. +.|-+ +...|+.+...++..++.++.|+++|.+|||..++.+.++..++.+.++-++|...+
T Consensus 59 ~~~~~a~~l~~I~~---diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~ 134 (599)
T PF06609_consen 59 VLVLPASILPYINA---DIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTF 134 (599)
T ss_pred HHhccHHHHHHHHH---hcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHH
Confidence 33444455666665 67655 566788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhh
Q psy6141 101 LAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPT 139 (144)
Q Consensus 101 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~ 139 (144)
+.+..+.|++.|.... ....++|..|.|.|....++..
T Consensus 135 iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~ 172 (599)
T PF06609_consen 135 IAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIAS 172 (599)
T ss_pred HHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHH
Confidence 9999999999877664 4556899999999987665443
No 103
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.31 E-value=2.3e-11 Score=86.56 Aligned_cols=112 Identities=23% Similarity=0.183 Sum_probs=89.5
Q ss_pred ccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHH
Q psy6141 25 TSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGR 104 (144)
Q Consensus 25 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (144)
...+.|.+.+ +.+. ++.+...+...++..++.+..|++.||+|+|+.+..+.....++.......++.+.+.+..
T Consensus 235 ~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (399)
T PRK05122 235 IATFITLYYA---ARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGA 309 (399)
T ss_pred HHHHHHHHHH---Hccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3344565555 4444 3445666778888899999999999999999998888887777777777777888788888
Q ss_pred HHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 105 CVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 105 ~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
++.|++.+...+.......|..|+++|+++.++.+..
T Consensus 310 ~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 346 (399)
T PRK05122 310 ALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVF 346 (399)
T ss_pred HHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999999888887778888999999999999887654
No 104
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.30 E-value=1.8e-11 Score=97.22 Aligned_cols=99 Identities=11% Similarity=0.056 Sum_probs=80.1
Q ss_pred chhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhh---hchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHH
Q psy6141 44 EEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILS---TGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPV 120 (144)
Q Consensus 44 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 120 (144)
...++..+.+.+...+.++++|+++||+|||+++.. ..+............++++.+++.|+++|++.+...+...+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 456778888999999999999999999999997533 22222222222233478999999999999999999999999
Q ss_pred HHhhccCcchhhhhchhhhhhc
Q psy6141 121 YLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 121 ~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
++.|++|+++|++++++.+...
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~ 153 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGT 153 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHH
Confidence 9999999999999999987654
No 105
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.30 E-value=4e-11 Score=85.96 Aligned_cols=116 Identities=18% Similarity=0.148 Sum_probs=95.8
Q ss_pred ccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHH
Q psy6141 25 TSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGR 104 (144)
Q Consensus 25 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (144)
.....|.+.++ ..|.++.+.+++.+...++.+++.++.+++.||.++++.+..+.+...++.+.....++.+...+..
T Consensus 242 ~~~~~p~~~~~--~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (417)
T PRK10489 242 VRVLYPALADE--VWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCL 319 (417)
T ss_pred HHHhhHHHHHh--ccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 34456777771 4888999999999999999999999999999998888888877777777777667777777777788
Q ss_pred HHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 105 CVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 105 ~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
++.|++.+...+...+++.|..|+++|+++.++.+...
T Consensus 320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 357 (417)
T PRK10489 320 ALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQN 357 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 88898888777777889999999999999999876543
No 106
>PRK12382 putative transporter; Provisional
Probab=99.30 E-value=2.2e-11 Score=86.57 Aligned_cols=113 Identities=19% Similarity=0.066 Sum_probs=90.4
Q ss_pred ccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHH
Q psy6141 25 TSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGR 104 (144)
Q Consensus 25 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (144)
...+.|.+.+ +.+.+ +.+.......++..+++++.|++.||+|+||.+..+.....++.......++.+...+..
T Consensus 235 ~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (392)
T PRK12382 235 IGTFVSLYFA---SKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGA 309 (392)
T ss_pred HHHHHHHHHH---hcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 3344555555 44443 345666777888899999999999999999999888888888877777777887778888
Q ss_pred HHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 105 CVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 105 ~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
.+.|++.+...+.......|.+|+++|+++.++.+...
T Consensus 310 ~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 347 (392)
T PRK12382 310 ALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQ 347 (392)
T ss_pred HHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 99999988888888888899999999999999877643
No 107
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.30 E-value=1.3e-11 Score=88.68 Aligned_cols=97 Identities=19% Similarity=0.238 Sum_probs=82.5
Q ss_pred cchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhc----hHHHHHHHHHHhhhhhhhhhhhH
Q psy6141 43 EEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALAN----GVPMILAGRCVAGFCVGIASLAL 118 (144)
Q Consensus 43 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~g~~~~~~ 118 (144)
..+.+...+...++..++.++.|++.||+|+|+.+..+.+...+......... +.+.+.+..++.|++.+...+..
T Consensus 250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~ 329 (418)
T TIGR00889 250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISG 329 (418)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35668889999999999999999999999999999999888888766665532 23556678899999998888888
Q ss_pred HHHHhhccCcchhhhhchhhh
Q psy6141 119 PVYLGETVQPEVRGTLGLLPT 139 (144)
Q Consensus 119 ~~~~~~~~~~~~r~~~~~~~~ 139 (144)
..+++|.+|+++|+++.++.+
T Consensus 330 ~~~i~~~~p~~~~g~~~g~~~ 350 (418)
T TIGR00889 330 SVFVEKEVPVHIRASAQGLFT 350 (418)
T ss_pred HHHHHHHCCHHHHHHHHHHHH
Confidence 899999999999999999886
No 108
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.29 E-value=3.1e-11 Score=85.95 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=85.3
Q ss_pred HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHH
Q psy6141 9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSF 88 (144)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 88 (144)
+......+..........+.+|.+.++ +++.++++.+++.+...++..+++++.|+++||+|||+.++.+........
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~ 82 (396)
T TIGR00882 5 WMFGLFFFLYFFIMSAYFPFFPIWLHD--VNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLF 82 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 344455566666667777888888762 689999999999999999999999999999999999999987665554433
Q ss_pred HHHH---Hhc-----hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccC
Q psy6141 89 LLIA---LAN-----GVPMILAGRCVAGFCVGIASLALPVYLGETVQ 127 (144)
Q Consensus 89 ~~~~---~~~-----~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ 127 (144)
.... ..+ ......+.+++.|++.+...+....+..|..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 129 (396)
T TIGR00882 83 APFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR 129 (396)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh
Confidence 3221 111 23334566788888887777777777766543
No 109
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.29 E-value=2e-11 Score=86.65 Aligned_cols=125 Identities=13% Similarity=-0.006 Sum_probs=93.6
Q ss_pred HHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch-HHHHHH-
Q psy6141 11 VSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL-PFIVSF- 88 (144)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~-~~~~~~- 88 (144)
+....+..........|++|.+.+ +++.|.++.+++.+...+...++++++++++||+||++....... ...+..
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~---~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~ 85 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLK---GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA 85 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 455666666677888899999998 899999999999999999999999999999999998543322111 111111
Q ss_pred HHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141 89 LLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF 140 (144)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 140 (144)
.....+++++.+++.|.+++.+.+...+...++..|. +++|++..+....
T Consensus 86 ~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~ 135 (382)
T TIGR00902 86 AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRL 135 (382)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHH
Confidence 2233568899999999999988877778877776654 4667777666543
No 110
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.29 E-value=1.8e-11 Score=88.97 Aligned_cols=118 Identities=15% Similarity=0.110 Sum_probs=95.4
Q ss_pred hcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH----hchHH
Q psy6141 23 AYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL----ANGVP 98 (144)
Q Consensus 23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~----~~~~~ 98 (144)
.......|.+.++ ..+.++++.++......++..++.++.|++.||+|||+.+..+.....++.....+ ..+.+
T Consensus 272 ~~~~~~~p~~~~~--~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 349 (485)
T TIGR00711 272 YGSFYLLPLYLQQ--VLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFL 349 (485)
T ss_pred HHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHH
Confidence 3344467777762 57889999999999999999999999999999999999988888877777766652 23455
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 99 MILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 99 ~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
.......+.|++.+...+.......|..|+++|+++.++.+...
T Consensus 350 ~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 393 (485)
T TIGR00711 350 AIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTR 393 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHH
Confidence 66667788999998888777778888899999999998877653
No 111
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.29 E-value=3.5e-11 Score=84.70 Aligned_cols=113 Identities=17% Similarity=0.152 Sum_probs=86.9
Q ss_pred ccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHH
Q psy6141 27 PAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCV 106 (144)
Q Consensus 27 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (144)
...|.+.++ +.+.++++.+...........++.++.|++.||+|||+.+..+.+...+........++.+.+.+.+.+
T Consensus 220 ~~~~~~~~~--~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (375)
T TIGR00899 220 INMPLLIIH--ELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLL 297 (375)
T ss_pred hhhHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666542 678888888888877777788889999999999999999887766655555555556677777778888
Q ss_pred hhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 107 AGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 107 ~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
.|++.+...+....+..|..|++ |+++.++.+...
T Consensus 298 ~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 332 (375)
T TIGR00899 298 NAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTG 332 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHH
Confidence 99988888888888899998764 568888766543
No 112
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.29 E-value=3.2e-11 Score=88.09 Aligned_cols=115 Identities=16% Similarity=0.061 Sum_probs=84.2
Q ss_pred cccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh--chHHHHHHH
Q psy6141 26 SPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA--NGVPMILAG 103 (144)
Q Consensus 26 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 103 (144)
..++|.+.++ +.+.++.+.+.+.+...++..++.++.|+++||+|||+.+..+.....+..+..... .+.+...+.
T Consensus 295 ~~~lp~~l~~--~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (496)
T PRK03893 295 QALLPTYLKT--DLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLL 372 (496)
T ss_pred HHHHHHHHHh--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3467887752 788999999999999999999999999999999999999887766655554433332 233333344
Q ss_pred HHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 104 RCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 104 ~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
.++.+.......+..+.+++|.+|+++|++..++.+...
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 411 (496)
T PRK03893 373 LFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVG 411 (496)
T ss_pred HHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhh
Confidence 444443333345667788999999999999998876543
No 113
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.29 E-value=1.6e-11 Score=89.23 Aligned_cols=130 Identities=19% Similarity=0.190 Sum_probs=94.0
Q ss_pred HHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHh----hhcchhhHhhh-ch
Q psy6141 8 SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIE----SLGRRTTILST-GL 82 (144)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~g~r~~~~~~-~~ 82 (144)
.+.++...+...+......+..+.+.+ +++.++.+.+.+.....+...+.+|+.|+++| |+||||.++.. ..
T Consensus 6 li~~~~~~~Giq~~~~l~~~~l~~yl~---~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~ 82 (477)
T TIGR01301 6 LLRVASVAAGVQFGWALQLSLLTPYVQ---ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAA 82 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHH
Confidence 344444445555556666666777777 89999999999999999999999999999999 59999998875 55
Q ss_pred HHHHHHHHHHHhchHH-----------------HHHHHHHHhhhhhhhhhhhHHHHHhhccCcchh--hhhchhhhh
Q psy6141 83 PFIVSFLLIALANGVP-----------------MILAGRCVAGFCVGIASLALPVYLGETVQPEVR--GTLGLLPTF 140 (144)
Q Consensus 83 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r--~~~~~~~~~ 140 (144)
..+++...+.++++.. ...++..+..++.....++..++++|..|+++| +.+.++.+.
T Consensus 83 ~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~ 159 (477)
T TIGR01301 83 LVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSF 159 (477)
T ss_pred HHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH
Confidence 5555556666654432 223333445557777788889999999998865 456665443
No 114
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.28 E-value=5.7e-11 Score=85.20 Aligned_cols=114 Identities=14% Similarity=-0.004 Sum_probs=80.5
Q ss_pred cccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhc--hHHHHHHH
Q psy6141 26 SPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALAN--GVPMILAG 103 (144)
Q Consensus 26 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 103 (144)
....|.+.+ +.+.++++.+...+...++..++.++.|++.||+|||+.+..+.+...+........+ +.......
T Consensus 251 ~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (426)
T PRK12307 251 FGLLPTYLA---GEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGAC 327 (426)
T ss_pred HHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHH
Confidence 446777777 6688888889888999999999999999999999999998887776666554443322 22222222
Q ss_pred HHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 104 RCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 104 ~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
.+..+....+..+..+.++.|.+|+++|+++.|+.+...
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 366 (426)
T PRK12307 328 LFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLA 366 (426)
T ss_pred HHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHH
Confidence 222222222334556678899999999999998866543
No 115
>KOG2533|consensus
Probab=99.27 E-value=1.2e-10 Score=84.99 Aligned_cols=106 Identities=13% Similarity=0.101 Sum_probs=96.0
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhh
Q psy6141 37 SRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASL 116 (144)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 116 (144)
++.++...+.+.+.+++.++++++.++.+.+.||++..+.+....+...+..+.....+|++.+++.|++.|+..+...|
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP 153 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWP 153 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccch
Confidence 37888889999999999999999999999999999988888777777777776666789999999999999999999999
Q ss_pred hHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 117 ALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 117 ~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
....++..++.+++|+..+++.+...
T Consensus 154 ~~~~~lg~wy~~~e~g~r~~~~~a~~ 179 (495)
T KOG2533|consen 154 GVVAILGNWYGKSERGLRMGIWYASA 179 (495)
T ss_pred HHHHHHHhhcChhhhhhhHHHHHHhc
Confidence 99999999999999999999887543
No 116
>KOG2504|consensus
Probab=99.26 E-value=2.4e-11 Score=89.09 Aligned_cols=115 Identities=20% Similarity=0.257 Sum_probs=99.7
Q ss_pred hcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHH
Q psy6141 23 AYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILA 102 (144)
Q Consensus 23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (144)
..+....+.+.+ +++.+.++.+|+.++......+..|+.+.+.||+|.|.+.+.+.++...+.++..++++.|.+++
T Consensus 63 ~~~Gv~~~~~~~---~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~l 139 (509)
T KOG2504|consen 63 NSFGLLFEELMD---YFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYL 139 (509)
T ss_pred heehhhHHHHHH---HhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 334456677777 88999999999999999999999999999999999999999999999999999999999988776
Q ss_pred -HHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 103 -GRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 103 -~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
..++.|+|.|..+......+..+| +++|+.++|+....
T Consensus 140 t~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~G 178 (509)
T KOG2504|consen 140 TFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSG 178 (509)
T ss_pred HHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhcc
Confidence 458889999999988888888777 55688888876543
No 117
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.26 E-value=4.7e-11 Score=85.72 Aligned_cols=99 Identities=13% Similarity=0.142 Sum_probs=85.3
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhH
Q psy6141 39 VSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLAL 118 (144)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 118 (144)
.+.+..+.+.+.+...++..++.++.|++.||+|+|+.+..+.++..+......+.++.+.+.+.+.+.|++.+...+..
T Consensus 257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 336 (420)
T PRK09528 257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGV 336 (420)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566778899999999999999999999999999999988888888887777888888888888999999888877777
Q ss_pred HHHHhhccCcchhhhhchh
Q psy6141 119 PVYLGETVQPEVRGTLGLL 137 (144)
Q Consensus 119 ~~~~~~~~~~~~r~~~~~~ 137 (144)
..++.|.+|++.|++..+.
T Consensus 337 ~~~~~~~~~~~~~a~~~~~ 355 (420)
T PRK09528 337 FKYITLNFDVRLSATIYLV 355 (420)
T ss_pred HHHHHHHcCccceeeeeee
Confidence 8899999999999876543
No 118
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.26 E-value=4e-11 Score=87.90 Aligned_cols=117 Identities=19% Similarity=0.099 Sum_probs=94.8
Q ss_pred cccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH---hchHHHH
Q psy6141 24 YTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL---ANGVPMI 100 (144)
Q Consensus 24 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~---~~~~~~~ 100 (144)
....+.|.+.+. ..+.++.+.+.......++..++.++.|++.||+|+|+.+..+.++..++...... .++.+..
T Consensus 277 ~~~~~~~~~lq~--v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 354 (495)
T PRK14995 277 GFELLMAQELQF--VHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQA 354 (495)
T ss_pred HHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 334466777662 57899999999999999999999999999999999999888887777776655443 2355556
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 101 LAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 101 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
....++.|++.|...+.......+..|+++++.+.++.+...
T Consensus 355 ~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 396 (495)
T PRK14995 355 WGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAY 396 (495)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHH
Confidence 667788999999988888888999999999999998876643
No 119
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.25 E-value=7.3e-11 Score=84.10 Aligned_cols=120 Identities=13% Similarity=0.127 Sum_probs=83.8
Q ss_pred HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHH-HHHHHHHhhHHHHhhhcchhhHh-hhchHHHH
Q psy6141 9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPL-SALFGGMAGGPLIESLGRRTTIL-STGLPFIV 86 (144)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~g~r~~~~-~~~~~~~~ 86 (144)
....+..+..+.......+.+|.+.+ ++++.++++.++..+...+ +...+.+.+++ .||+||||.++ .+.+...+
T Consensus 18 ~~~~~~~~~~~~~~~~~~p~~~~~l~--~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~ 94 (393)
T PRK15011 18 TAFLIVAFLTGIAGALQTPTLSIFLT--DEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVL 94 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHH
Confidence 34445566666666777788888765 2889999999998765544 66666666666 99999998754 45555556
Q ss_pred HHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchh
Q psy6141 87 SFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVR 131 (144)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r 131 (144)
......++++++.+++.+.+.+...+...+....+..|..|+++|
T Consensus 95 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (393)
T PRK15011 95 ACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGR 139 (393)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccc
Confidence 666667788888876665555544456677777788887776655
No 120
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.24 E-value=5.4e-11 Score=84.42 Aligned_cols=118 Identities=8% Similarity=-0.087 Sum_probs=87.6
Q ss_pred HhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcch----hhHhhhchHHHHHHHH
Q psy6141 15 SMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRR----TTILSTGLPFIVSFLL 90 (144)
Q Consensus 15 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r----~~~~~~~~~~~~~~~~ 90 (144)
.+..........|.+|.+.+ +.+.|.++.+++.+...++..++++++|++.||+||| +.+...... .....
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~---~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~--~~~~~ 87 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLK---GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL--FAVAF 87 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHH---hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH--HHHHH
Confidence 45555666888899999998 8899999999999999999999999999999999984 332222111 12222
Q ss_pred HHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhh
Q psy6141 91 IALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPT 139 (144)
Q Consensus 91 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~ 139 (144)
....++++.+++.|++.|++.+...+...+...++ +++|++..+...
T Consensus 88 ~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~ 134 (382)
T PRK11128 88 WFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVR 134 (382)
T ss_pred HHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHH
Confidence 33457899998999999998888888777777766 344665555443
No 121
>PRK03699 putative transporter; Provisional
Probab=99.24 E-value=9.5e-11 Score=83.51 Aligned_cols=125 Identities=10% Similarity=0.025 Sum_probs=92.5
Q ss_pred HHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHH
Q psy6141 12 SLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLI 91 (144)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~ 91 (144)
.+..+...........+.|.+.++ +++.++++.+...+...++..++.+..+++.||++||+.+........+.....
T Consensus 211 ~~~~~~~~~~~~~~~~~~p~~l~~--~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~ 288 (394)
T PRK03699 211 AIAALLYILAQLTFISWVPEYAQK--KFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLF 288 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence 333333333344455678888852 678999999999999999999999999999999999999887776666666666
Q ss_pred HHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhh
Q psy6141 92 ALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPT 139 (144)
Q Consensus 92 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~ 139 (144)
...++.+...+..++.|++.+...+....+..|..|++ +++..+...
T Consensus 289 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~ 335 (394)
T PRK03699 289 VNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-SPKLVNFIL 335 (394)
T ss_pred HHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CHHHHHHHH
Confidence 66677766667778888888877777777778877644 445444443
No 122
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.24 E-value=1.2e-10 Score=82.65 Aligned_cols=111 Identities=13% Similarity=0.050 Sum_probs=93.0
Q ss_pred ccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHH
Q psy6141 25 TSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGR 104 (144)
Q Consensus 25 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (144)
.....|.+.+ +.|.++.+.+...+...++..+..++.+++.||+|+|+.+..+.+...+........++.+.+++..
T Consensus 224 ~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (382)
T PRK11128 224 YYGFSAIYWQ---AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQ 300 (382)
T ss_pred HHHHHHHHHH---HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3345566766 6888988999999988899999999999999999999999988888888777777788888888899
Q ss_pred HHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhh
Q psy6141 105 CVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPT 139 (144)
Q Consensus 105 ~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~ 139 (144)
++.|++.+...+....+..+. +++++++..++.+
T Consensus 301 ~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 334 (382)
T PRK11128 301 ILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYS 334 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHH
Confidence 999999998888888888887 5666777777664
No 123
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.24 E-value=6e-11 Score=83.44 Aligned_cols=131 Identities=23% Similarity=0.233 Sum_probs=85.3
Q ss_pred HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhh-hchHHHHH
Q psy6141 9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILS-TGLPFIVS 87 (144)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~-~~~~~~~~ 87 (144)
.......+.............|.+.++ +.+.++.+.++......++..++.++.|++.||++||+.... ........
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 295 (399)
T TIGR00893 218 WGLALGQFLVNIGLGFFLTWFPTYLVQ--ERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIA 295 (399)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH--HhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Confidence 334444455555555566677777662 678888899999999999999999999999999999862111 11111111
Q ss_pred ----HHH---HHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 88 ----FLL---IALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 88 ----~~~---~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
... ....++.+.......+.+.+.+ ..+....+.+|.+|+++|++..++.+...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 356 (399)
T TIGR00893 296 GLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLG 356 (399)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHH
Confidence 111 1112233333333344444444 67888899999999999999999877654
No 124
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.21 E-value=1.3e-10 Score=85.53 Aligned_cols=116 Identities=20% Similarity=0.204 Sum_probs=103.2
Q ss_pred cccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHH
Q psy6141 24 YTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAG 103 (144)
Q Consensus 24 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (144)
.....+|.+.++ +++.++...|++.+...+|.+++....+++.+|+++++.+..+.+..++..+..++.++.+...+.
T Consensus 236 a~~aLlPl~a~~--~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~ 313 (524)
T PF05977_consen 236 AVWALLPLFARD--VLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIA 313 (524)
T ss_pred HHHHhhhHHHHH--HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 334567877662 788899999999999999999999999999999999999888888888888888999999988888
Q ss_pred HHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 104 RCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 104 ~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
.++.|++........++..++..|++.||+..++++..
T Consensus 314 l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~ 351 (524)
T PF05977_consen 314 LFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMV 351 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHH
Confidence 99999999988888999999999999999999988754
No 125
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.20 E-value=2.5e-10 Score=83.21 Aligned_cols=136 Identities=12% Similarity=0.082 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcch--hhHhhhch
Q psy6141 5 VLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRR--TTILSTGL 82 (144)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r--~~~~~~~~ 82 (144)
...+....++.++..-....+......+.+ ++++++..+...+.....+..++|.+++|++.||+|.| +++..+.+
T Consensus 280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~--~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~ 357 (477)
T PF11700_consen 280 LRQLFLFLIAYFLYSDGVNTIISFAGIYAT--EVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLI 357 (477)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 334444445555444444444445555655 38999999999999999999999999999999999999 78777766
Q ss_pred HHHHHHHHHHH--------hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 83 PFIVSFLLIAL--------ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 83 ~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
...+..+.-.+ .++.+.+.+...+.|+..|..++..-++.+|+.|+++.+...|++....
T Consensus 358 ~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~g 425 (477)
T PF11700_consen 358 LWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITG 425 (477)
T ss_pred HHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 66444443333 5677888888999999999999999999999999999999999887653
No 126
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.20 E-value=1e-10 Score=83.92 Aligned_cols=79 Identities=18% Similarity=-0.011 Sum_probs=63.0
Q ss_pred HHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHH
Q psy6141 7 ASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIV 86 (144)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~ 86 (144)
..+......+..........+++|.+.++ ++|.++.+.+.+.+...++..+++++.|+++||+|||+.++.+.....+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~ 88 (420)
T PRK09528 11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHD--INGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLV 88 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 33444455566666566778888888873 6899999999999999999999999999999999999998876555444
Q ss_pred H
Q psy6141 87 S 87 (144)
Q Consensus 87 ~ 87 (144)
.
T Consensus 89 ~ 89 (420)
T PRK09528 89 L 89 (420)
T ss_pred H
Confidence 3
No 127
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.20 E-value=1e-10 Score=83.31 Aligned_cols=96 Identities=14% Similarity=0.128 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhc
Q psy6141 46 ASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGET 125 (144)
Q Consensus 46 ~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~ 125 (144)
.+.+.....++..++.+..|++.||+|||+.+..+.....+..+.....++.+.+.+.+++.|++.+...+.......|.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 45556667788889999999999999999999888887777777666677888888889999999999888888889999
Q ss_pred cCcchhhhhchhhhhh
Q psy6141 126 VQPEVRGTLGLLPTFL 141 (144)
Q Consensus 126 ~~~~~r~~~~~~~~~~ 141 (144)
.|+++|++..++.+..
T Consensus 340 ~~~~~~g~~~~~~~~~ 355 (408)
T PRK09874 340 SSNQIAGRIFSYNQSF 355 (408)
T ss_pred CCcccceeeehHHHHH
Confidence 9999999988876554
No 128
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.20 E-value=1.3e-10 Score=83.55 Aligned_cols=108 Identities=8% Similarity=-0.005 Sum_probs=85.6
Q ss_pred HHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcc-hhhHhhhchHHHHHHH
Q psy6141 11 VSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGR-RTTILSTGLPFIVSFL 89 (144)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~-r~~~~~~~~~~~~~~~ 89 (144)
++...+.+........+.++.+.+ +++|.+.++.|++.+...++.+++++++|+++||+|| |+.+..+.+...+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~--~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~ 84 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMS--KTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLF 84 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 455566666667777677777665 2789999999999999999999999999999999965 7677777777777777
Q ss_pred HHHHhchHHHHHHHHHHhhhhhhhhhhhHHH
Q psy6141 90 LIALANGVPMILAGRCVAGFCVGIASLALPV 120 (144)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 120 (144)
...+.++++.+.+.|.+.|++.+...+...+
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 115 (418)
T TIGR00889 85 FAAQVTTPAGMFPVLLANSLAYMPTIALTNS 115 (418)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHccHHHHHHH
Confidence 7778888998888898888876655554443
No 129
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.19 E-value=9.7e-11 Score=93.05 Aligned_cols=116 Identities=14% Similarity=0.181 Sum_probs=97.8
Q ss_pred ccccccccccCCCCCCCCcc-hhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHH
Q psy6141 25 TSPAIPSMNQMGSRVSPTEE-EASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAG 103 (144)
Q Consensus 25 ~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (144)
....+|.+.++ .++.+.. +.+++.+...++.+++.++.+++.||+++|+.+.++.+..+++.+...+..+.+.+.+.
T Consensus 251 ~~~~~~~~~~~--~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (1146)
T PRK08633 251 AQANFPAYAKE--VLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVL 328 (1146)
T ss_pred HHHhhHHHHHH--HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33455666552 6788888 89999999999999999999999999999998888888877777777777788888888
Q ss_pred HHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 104 RCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 104 ~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
.++.|++.+...+...+++.+..|+++|+++.++.+...
T Consensus 329 ~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~ 367 (1146)
T PRK08633 329 FFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQ 367 (1146)
T ss_pred HHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHH
Confidence 899999999888888999999999999999988876543
No 130
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.19 E-value=2.2e-10 Score=84.15 Aligned_cols=121 Identities=13% Similarity=0.005 Sum_probs=73.8
Q ss_pred hhhhhcccccccccccCCCCCCCCcchhH------------HHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHH
Q psy6141 19 GFASAYTSPAIPSMNQMGSRVSPTEEEAS------------WIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIV 86 (144)
Q Consensus 19 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~ 86 (144)
.........+.|.+.+ +.|.++.+.+ .......++.+++.+..+++.||+|||+.++.+.....+
T Consensus 301 ~~~~y~~~~~~p~i~~---~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~ 377 (502)
T TIGR00887 301 DIAFYGVNLNQKVILS---AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTV 377 (502)
T ss_pred HHHHHccccccHHHHH---HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHH
Confidence 3333445556777766 5565543211 123344556777889999999999999998887777666
Q ss_pred HHHHHHHhc----hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 87 SFLLIALAN----GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 87 ~~~~~~~~~----~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
+........ +...+........+...+..+....+.+|.+|++.|+++.++.+...
T Consensus 378 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~ 437 (502)
T TIGR00887 378 LFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASG 437 (502)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHh
Confidence 655544321 11111111111122222234566778899999999999999877654
No 131
>PRK10504 putative transporter; Provisional
Probab=99.18 E-value=1.7e-10 Score=83.92 Aligned_cols=117 Identities=12% Similarity=0.059 Sum_probs=91.3
Q ss_pred hcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh---chHHH
Q psy6141 23 AYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA---NGVPM 99 (144)
Q Consensus 23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~---~~~~~ 99 (144)
.......|.+.++ ..+.++.+.++......++..++.++.+++.||+|+|+.+..+.....+........ ++.+.
T Consensus 278 ~~~~~~~~~~~~~--~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (471)
T PRK10504 278 GMLPFMTPVFLQI--GLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYL 355 (471)
T ss_pred HHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 3344456766652 578888899999999999999999999999999999999988888777766655542 33334
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 100 ILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 100 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
+.+..++.|++.+...+..+....+..|+++|+.+.++.+..
T Consensus 356 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 397 (471)
T PRK10504 356 LPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMI 397 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHH
Confidence 445567778888888888889999999999999998887654
No 132
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.18 E-value=2.3e-10 Score=82.50 Aligned_cols=117 Identities=11% Similarity=0.051 Sum_probs=82.5
Q ss_pred hcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH-----hc--
Q psy6141 23 AYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL-----AN-- 95 (144)
Q Consensus 23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~-----~~-- 95 (144)
.....+.|.+.+ +.+.+.++.+.......++..++.++.++++||+|||+.+..+.+...++...... .+
T Consensus 301 ~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (481)
T TIGR00879 301 NAIMYYSPTIFE---NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGS 377 (481)
T ss_pred eehHHHHHHHHH---HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 334445677766 77888888888899999999999999999999999999998887777776665542 11
Q ss_pred ----hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 96 ----GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 96 ----~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
+...+....++.+.......+....+..|.+|+++|+++.++.+...
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 428 (481)
T TIGR00879 378 SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAAN 428 (481)
T ss_pred ccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHH
Confidence 22222222222222222334556677799999999999998876543
No 133
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.18 E-value=1.8e-10 Score=84.82 Aligned_cols=114 Identities=17% Similarity=0.140 Sum_probs=94.2
Q ss_pred ccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH-----hchHHHHH
Q psy6141 27 PAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL-----ANGVPMIL 101 (144)
Q Consensus 27 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 101 (144)
...+.+.. +..-|+...+++.....+-.++..+++|.++||++|||.++.+-+...+....... ..+.+.++
T Consensus 31 va~~wlv~---~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll 107 (524)
T PF05977_consen 31 VALAWLVT---QLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLL 107 (524)
T ss_pred HHHHHHHH---HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHH
Confidence 33444444 55678889999999999999999999999999999999999888777665444332 24678888
Q ss_pred HHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhcc
Q psy6141 102 AGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGN 143 (144)
Q Consensus 102 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 143 (144)
+..++.|++.....|..++++.|+.|+++...+.++.+...+
T Consensus 108 ~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~n 149 (524)
T PF05977_consen 108 ILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFN 149 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999988876543
No 134
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.17 E-value=3e-10 Score=81.16 Aligned_cols=123 Identities=12% Similarity=0.040 Sum_probs=84.6
Q ss_pred HhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHh-hhchHHHHHHHHHHH
Q psy6141 15 SMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTIL-STGLPFIVSFLLIAL 93 (144)
Q Consensus 15 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~-~~~~~~~~~~~~~~~ 93 (144)
.+...........+.|.+.+ +.+.++.+.+.......++..++.+..|+++||+|||+... .+.+...+.......
T Consensus 231 ~~~~~~~~~~~~~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~ 307 (402)
T TIGR00897 231 RIINTIGLFGFAVFLPMFVA---ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYY 307 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 33333344445557788877 78899889888888899999999999999999999988764 222333332222221
Q ss_pred -----hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 94 -----ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 94 -----~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
.++.+...+..++.|++.+...+ ......|.. +++|+++.|+.+...
T Consensus 308 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~ 359 (402)
T TIGR00897 308 IPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSA 359 (402)
T ss_pred HHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHH
Confidence 23566666777888888776544 445667765 468999999877654
No 135
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.17 E-value=2.3e-10 Score=83.10 Aligned_cols=124 Identities=17% Similarity=0.060 Sum_probs=93.1
Q ss_pred hhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhh--cchhhHhhh--chHHHHHHHHH
Q psy6141 16 MIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESL--GRRTTILST--GLPFIVSFLLI 91 (144)
Q Consensus 16 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--g~r~~~~~~--~~~~~~~~~~~ 91 (144)
+...........++|.+.+ +.+.++.+.+...+...++.+++.++.|++.||. ++|+..... .+......+..
T Consensus 251 ~l~~~~~~~~~~~l~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~ 327 (455)
T TIGR00892 251 VIMFLGFFAPIIFLVPYAK---DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLC 327 (455)
T ss_pred HHHHHHccchHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444456677777 6789999999999999999999999999999983 334333332 23333334444
Q ss_pred HHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 92 ALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 92 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
...++++.+.+.+++.|++.+...+.....+.|.+|++++++..++.+...
T Consensus 328 ~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 378 (455)
T TIGR00892 328 ALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVE 378 (455)
T ss_pred HHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHH
Confidence 567788888888999999999888888999999999999999998887654
No 136
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.16 E-value=2.7e-10 Score=82.86 Aligned_cols=112 Identities=12% Similarity=0.072 Sum_probs=81.7
Q ss_pred ccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh--chH-H-HHHH
Q psy6141 27 PAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA--NGV-P-MILA 102 (144)
Q Consensus 27 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~-~-~~~~ 102 (144)
.+.|.+.+ +.+.+.++..+......+...++.++.+++.||+|||+.++.+.+..+++.+..... ++. + ....
T Consensus 292 ~~~p~i~~---~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~ 368 (479)
T PRK10077 292 YYAPEIFK---TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL 368 (479)
T ss_pred HHHHHHHH---HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 34577666 678887777777777888899999999999999999999999888888877665432 121 1 2222
Q ss_pred HHHHhhhhhhh-hhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 103 GRCVAGFCVGI-ASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 103 ~~~~~g~~~g~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
...+.+.+.+. ..+..+.+++|.+|+++|+++.++.+..
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~ 408 (479)
T PRK10077 369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAA 408 (479)
T ss_pred HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHH
Confidence 33334444332 2356788999999999999999987654
No 137
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.16 E-value=5.9e-11 Score=82.63 Aligned_cols=120 Identities=25% Similarity=0.279 Sum_probs=95.7
Q ss_pred hhhcccccccccccCCCCCCCC-cchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH---hch
Q psy6141 21 ASAYTSPAIPSMNQMGSRVSPT-EEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL---ANG 96 (144)
Q Consensus 21 ~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~---~~~ 96 (144)
.........|.+.++ +++.+ ..+.+...+...+...++.++.+++.||+++|+..........+....... .++
T Consensus 221 ~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (352)
T PF07690_consen 221 VFSGFSFFLPLYLQE--VLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSS 298 (352)
T ss_dssp HHHHHHHHHHHHCCH--HHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCH
T ss_pred HHHHhhcccchhhhh--ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334455667776331 67788 788899999999999999999999999999988877766666665555443 345
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 97 VPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 97 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
.....+..++.|++.+...+....+..|..|+|+|+++.++.+...
T Consensus 299 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 344 (352)
T PF07690_consen 299 PVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIG 344 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 6677777888999999999999999999999999999999887654
No 138
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.14 E-value=4.6e-10 Score=80.08 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=89.0
Q ss_pred HHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH
Q psy6141 14 GSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL 93 (144)
Q Consensus 14 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 93 (144)
..............+.|.+.+ +.+.+.++.+...+...++.+++.+..+++.||.|||+....+..+..++......
T Consensus 213 ~~~~~~~~~~~~~~~lp~~l~---~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~ 289 (393)
T PRK09705 213 YFGLINGGYASLIAWLPAFYI---EIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIW 289 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 333334444455567788887 67899999999999999999999999999999999999988877666666554433
Q ss_pred -hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccC-cchhhhhchhhhhhc
Q psy6141 94 -ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQ-PEVRGTLGLLPTFLG 142 (144)
Q Consensus 94 -~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~ 142 (144)
.++..... ..+.|++.+...+.......|..+ +++|++..++.+...
T Consensus 290 ~~~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 338 (393)
T PRK09705 290 LPLQLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIG 338 (393)
T ss_pred ccchHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 22222222 245677777777777666677765 678899888766543
No 139
>PRK03545 putative arabinose transporter; Provisional
Probab=99.14 E-value=5.5e-10 Score=79.45 Aligned_cols=110 Identities=15% Similarity=0.055 Sum_probs=80.7
Q ss_pred cccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHH-HHHHhchHHHHHHHHHH
Q psy6141 28 AIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFL-LIALANGVPMILAGRCV 106 (144)
Q Consensus 28 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 106 (144)
+.|.+.++ +.+.++.+.+...+...++.+++.++.++++||++||+... +......... .....++.+.+.+..++
T Consensus 227 ~~~~~l~~--~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l 303 (390)
T PRK03545 227 YIEPFVQQ--VAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIF 303 (390)
T ss_pred HHHHHHHH--hcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 34444441 57888889999999999999999999999999999887544 3333333333 33445677777778888
Q ss_pred hhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 107 AGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 107 ~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
.|++.+...+.....+.|..| ++|+++.++.+..
T Consensus 304 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~ 337 (390)
T PRK03545 304 WGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGI 337 (390)
T ss_pred HHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 898877766667778888876 5788888776543
No 140
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.14 E-value=7e-10 Score=77.92 Aligned_cols=115 Identities=13% Similarity=0.053 Sum_probs=83.7
Q ss_pred hcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhh-cchhhHhhhchHHHHHHHHHHHhchHHHHH
Q psy6141 23 AYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESL-GRRTTILSTGLPFIVSFLLIALANGVPMIL 101 (144)
Q Consensus 23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (144)
.....+.|.+.+ +.+.++++.+...+...++.+++.++.|++.||+ +||+.+..+.....++.....+.++.....
T Consensus 214 ~~~~~~lp~~~~---~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (355)
T TIGR00896 214 YSLIGWLPAILI---SHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA 290 (355)
T ss_pred HHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 344456788887 6788999999999999999999999999999999 456666666667766666565544332222
Q ss_pred HHHHHhhhhhhhhhhhHHHHHhhccC-cchhhhhchhhhhh
Q psy6141 102 AGRCVAGFCVGIASLALPVYLGETVQ-PEVRGTLGLLPTFL 141 (144)
Q Consensus 102 ~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~ 141 (144)
...+.|++.|...+.....+.+..+ +++++...++.+..
T Consensus 291 -~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 330 (355)
T TIGR00896 291 -WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSI 330 (355)
T ss_pred -HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 3467789988888877676665554 56678777775543
No 141
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.13 E-value=5e-10 Score=79.46 Aligned_cols=107 Identities=10% Similarity=0.072 Sum_probs=81.2
Q ss_pred cccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHH
Q psy6141 26 SPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRC 105 (144)
Q Consensus 26 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (144)
..++|.+.+ +.+.++++.+...+...++..+++++.|++.||+|+|+.+..+.....++..... . .........
T Consensus 220 ~~~lp~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~ 293 (381)
T PRK03633 220 YGLMPLYLN---HQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALF 293 (381)
T ss_pred HHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHH
Confidence 345788777 6788888899999999999999999999999999999988877776666554332 1 223334566
Q ss_pred HhhhhhhhhhhhHHHHHhhccCcchhhhhchhh
Q psy6141 106 VAGFCVGIASLALPVYLGETVQPEVRGTLGLLP 138 (144)
Q Consensus 106 ~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~ 138 (144)
+.|++.....+.......|..|+++++...+..
T Consensus 294 l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 326 (381)
T PRK03633 294 ILGAAGFTLYPVAMAWACEKVEHHELVAMNQAL 326 (381)
T ss_pred HHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 777776677788888889999988777655543
No 142
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.13 E-value=4.8e-10 Score=80.48 Aligned_cols=130 Identities=13% Similarity=0.060 Sum_probs=81.9
Q ss_pred HHHHHhhhhhhhhcccccccccccCCCCC--CCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhh-HhhhchHHHHH
Q psy6141 11 VSLGSMIVGFASAYTSPAIPSMNQMGSRV--SPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTT-ILSTGLPFIVS 87 (144)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~-~~~~~~~~~~~ 87 (144)
.....+...........+.|.+.+ +. +.++.+.+.......++..++.+..|+++||+++|+. .....+...++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~p~~l~---~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~ 323 (412)
T TIGR02332 247 YTLAYFCLTNTLSAINIWTPQILQ---SFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAG 323 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHH
Confidence 344444444555556678899887 43 5677788888999999999999999999999997775 33333333333
Q ss_pred HHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhcc
Q psy6141 88 FLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGN 143 (144)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 143 (144)
.......++.........+.+++.....+.......|.+|+|+|+++.|+.+...+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~ 379 (412)
T TIGR02332 324 WLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGN 379 (412)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhh
Confidence 32222222322222222222333322233444555788999999999998876653
No 143
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.11 E-value=5.5e-11 Score=85.51 Aligned_cols=122 Identities=11% Similarity=0.130 Sum_probs=90.1
Q ss_pred hhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh----hcchhh-HhhhchHHHHHHHHHH
Q psy6141 18 VGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES----LGRRTT-ILSTGLPFIVSFLLIA 92 (144)
Q Consensus 18 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~g~r~~-~~~~~~~~~~~~~~~~ 92 (144)
.+.......++++.+..+ ++|.++.+.+.+.+...+...+..|+.|+++|| +||||. ++.+....+++...+.
T Consensus 11 ~~~~~~~~~~~l~~~~~~--~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~ 88 (437)
T TIGR00792 11 NNFIFAIVSTYLLFFYTD--VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF 88 (437)
T ss_pred HHHHHHHHHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence 334444444555555552 789999999999999999999999999999998 677565 5566677777766666
Q ss_pred Hhch------HHHHHHHHHHhhhhhhhhhhhHHHHHhhcc-Ccchhhhhchhhhhh
Q psy6141 93 LANG------VPMILAGRCVAGFCVGIASLALPVYLGETV-QPEVRGTLGLLPTFL 141 (144)
Q Consensus 93 ~~~~------~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~ 141 (144)
..++ ...+.+.+++.+.+.+....+..++..|.. |+++|++..++.+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~ 144 (437)
T TIGR00792 89 TTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFG 144 (437)
T ss_pred hCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHH
Confidence 5443 345666777788888777777778888887 578899887776543
No 144
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.11 E-value=1.6e-09 Score=78.01 Aligned_cols=100 Identities=23% Similarity=0.361 Sum_probs=78.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh-chHHHHHHHHHHhhhhhhhhhhhHHH
Q psy6141 42 TEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA-NGVPMILAGRCVAGFCVGIASLALPV 120 (144)
Q Consensus 42 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~~ 120 (144)
++.+.+.......++.+++.++++++.||+|+|+.+..+..+.+++.....+. ++.+.+.+..++.|++.+...+..++
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777778899999999999999999999999998888777776666554 45566667778889999888888889
Q ss_pred HHhhccC-------cchhhhhchhhhhh
Q psy6141 121 YLGETVQ-------PEVRGTLGLLPTFL 141 (144)
Q Consensus 121 ~~~~~~~-------~~~r~~~~~~~~~~ 141 (144)
.++|..| ++++|...++.+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 362 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFV 362 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHH
Confidence 9988876 34567777776654
No 145
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.11 E-value=1.2e-09 Score=77.19 Aligned_cols=113 Identities=20% Similarity=0.232 Sum_probs=85.9
Q ss_pred cccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh-----chHHHH
Q psy6141 26 SPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA-----NGVPMI 100 (144)
Q Consensus 26 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 100 (144)
....|.+.++ +.+.++++.+.+.....++..++.++.+++.||+|+|+.+..+.....++....... ++.+..
T Consensus 226 ~~~~~~~~~~--~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (385)
T TIGR00710 226 FSGAPFVYID--IMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMI 303 (385)
T ss_pred HHcChHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3345655542 678899999999999999999999999999999999999888777766665555432 233444
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 101 LAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 101 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
.....+.|++.+...+.......|..| ++|+++.++.+..
T Consensus 304 ~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~ 343 (385)
T TIGR00710 304 IGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTL 343 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHH
Confidence 555677888888888888888888876 5788888876543
No 146
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.10 E-value=4.3e-10 Score=79.03 Aligned_cols=117 Identities=16% Similarity=0.155 Sum_probs=84.2
Q ss_pred cccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH--hc--hHHH
Q psy6141 24 YTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL--AN--GVPM 99 (144)
Q Consensus 24 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~--~~--~~~~ 99 (144)
......|.+.++ .++.++++.+.......+...++.++.|++.||+|+|+....+......+...... .. +.+.
T Consensus 243 ~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (366)
T TIGR00886 243 GVSSIFAMFFKD--QFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAV 320 (366)
T ss_pred HHHHHHHHHHHH--HcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHH
Confidence 344556667652 67888899998899999999999999999999999998877766665555544443 22 4544
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhcc
Q psy6141 100 ILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGN 143 (144)
Q Consensus 100 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 143 (144)
..+...+.++..|...+.......|..| +++++..|+.+...+
T Consensus 321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~ 363 (366)
T TIGR00886 321 FIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGN 363 (366)
T ss_pred HHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhcc
Confidence 4444455555555555566677788876 689999998877654
No 147
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.10 E-value=1.1e-09 Score=79.39 Aligned_cols=130 Identities=14% Similarity=0.094 Sum_probs=81.2
Q ss_pred HHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhh--cchhhHh-hhchHHHH
Q psy6141 10 TVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESL--GRRTTIL-STGLPFIV 86 (144)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--g~r~~~~-~~~~~~~~ 86 (144)
...+..+...........+.|.+.++ +.+.+.++.+.......++..++.++.|+++||+ +||+... ....+..+
T Consensus 257 ~~~l~~~~~~~~~~~~~~~~P~~l~~--~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~ 334 (452)
T PRK11273 257 YIAIANVFVYLLRYGILDWSPTYLKE--VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI 334 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence 33344444443344455678888872 5788888888888889999999999999999999 4454322 22222223
Q ss_pred HHHHHHH--hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 87 SFLLIAL--ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 87 ~~~~~~~--~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
+...... ..+.+...+..+..|............+..|.+|+++|+++.|+.+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 391 (452)
T PRK11273 335 ATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF 391 (452)
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHH
Confidence 2222222 234444444445555543332333445678999999999999987654
No 148
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.08 E-value=9.7e-10 Score=77.92 Aligned_cols=128 Identities=13% Similarity=0.046 Sum_probs=79.1
Q ss_pred HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcch---hhHhh-hchHH
Q psy6141 9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRR---TTILS-TGLPF 84 (144)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r---~~~~~-~~~~~ 84 (144)
+......+...........++|.+.+ +.+.+.+ .+.......+... +..++++||.+|| +.... ..+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~wlp~~L~---~~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~~r~~~r~~~~~~~~~~~ 267 (368)
T TIGR00903 195 WIIGAILGFGVALFDNLAIWLEAALR---PAGLEDI-AGDAVALAILAGL---IGVAVIPDRVARAGLRSIYIRAAALLI 267 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCChH-HHHHHHHHHHHHH---HHHHHhhHHhhhhhhHHHHHHHHHHHH
Confidence 44444455555555566678999998 6666654 4444444444444 4457888887653 33222 33333
Q ss_pred HHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhcc
Q psy6141 85 IVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGN 143 (144)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 143 (144)
++........++.....+...+.+++.....+..+.+.+|.+|++.|+++.|+.+..++
T Consensus 268 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~ 326 (368)
T TIGR00903 268 AAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSR 326 (368)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHH
Confidence 33333334444444444455666777777777788899999999999999999887653
No 149
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.07 E-value=1.2e-09 Score=76.58 Aligned_cols=130 Identities=26% Similarity=0.223 Sum_probs=84.5
Q ss_pred HHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcc-hhhHhhh-c-hHHHHH
Q psy6141 11 VSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGR-RTTILST-G-LPFIVS 87 (144)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~-r~~~~~~-~-~~~~~~ 87 (144)
..+..+...........+.|.+.++ +.+.++++.+...+...++..++.++.+++.||..+ |+..... . ......
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~ 298 (379)
T TIGR00881 221 ISLGYVFVYVVRTGILDWSPLYLTQ--EKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVS 298 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 3334444444444455567777652 678899999999999999999999999999998643 3322211 1 111122
Q ss_pred HHHHHH--hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 88 FLLIAL--ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 88 ~~~~~~--~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
...... ..+.+...+..++.|.......+....+..|.+|+++|+++.++.+...
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 355 (379)
T TIGR00881 299 LLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFA 355 (379)
T ss_pred HHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhh
Confidence 222222 2344455556666776655555666778899999999999999887654
No 150
>TIGR00898 2A0119 cation transport protein.
Probab=99.07 E-value=2.6e-09 Score=78.32 Aligned_cols=93 Identities=22% Similarity=0.094 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchH--HHHHHHHHHhhhhhhhhhhhHHHHHhhccC
Q psy6141 50 GSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGV--PMILAGRCVAGFCVGIASLALPVYLGETVQ 127 (144)
Q Consensus 50 ~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ 127 (144)
.....+..+++.++.+++.||+|||+.+..+.+..+++.+...+.++. +...+..++.+++.+...+....+.+|.+|
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 440 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP 440 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 344566778889999999999999999999888888877766665433 444445566667777777888899999999
Q ss_pred cchhhhhchhhhhhc
Q psy6141 128 PEVRGTLGLLPTFLG 142 (144)
Q Consensus 128 ~~~r~~~~~~~~~~~ 142 (144)
++.|+++.++.+...
T Consensus 441 ~~~r~~~~g~~~~~~ 455 (505)
T TIGR00898 441 TVVRNLGVGVCSTMA 455 (505)
T ss_pred HHHHhhhHhHHHHHH
Confidence 999999998877654
No 151
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.06 E-value=5.2e-10 Score=89.10 Aligned_cols=123 Identities=15% Similarity=0.054 Sum_probs=94.5
Q ss_pred hhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh---
Q psy6141 18 VGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA--- 94 (144)
Q Consensus 18 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--- 94 (144)
............|.+.++ .++.++.+.+++.+...++.+++.++.|+++|+.++++.+..+.++..+..+...+.
T Consensus 237 ~~~~~~~~~~~~p~~~~~--~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 314 (1140)
T PRK06814 237 FWLVGAVVLSQLPLLAKE--TLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSS 314 (1140)
T ss_pred HHHHHHHHHHHhHHHHHH--HcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccc
Confidence 333334444567877762 578899999999999999999999999999998887776555555544444333332
Q ss_pred -----------------chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 95 -----------------NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 95 -----------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
++.+.+.+..++.|++.+...+...+.+++..|+++||++.|..+...
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~ 379 (1140)
T PRK06814 315 VPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLN 379 (1140)
T ss_pred cccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHH
Confidence 566777778888999999988889999999999999999999877653
No 152
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.03 E-value=2.1e-09 Score=76.82 Aligned_cols=112 Identities=19% Similarity=0.143 Sum_probs=83.6
Q ss_pred ccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh-----chHHHHH
Q psy6141 27 PAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA-----NGVPMIL 101 (144)
Q Consensus 27 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 101 (144)
...|.+.++ +++.++.+.++......++..++.+..+++.||+++|+.+..+.+...++....... ++.+.+.
T Consensus 236 ~~~p~~~~~--~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 313 (406)
T PRK15402 236 ALSPVILIS--GEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLT 313 (406)
T ss_pred HHhHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHH
Confidence 345665441 678888888888888888899999999999999999999888877776666655442 3456667
Q ss_pred HHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 102 AGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 102 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
+...+.|++.+...+......... ++++|++..+..+..
T Consensus 314 ~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~ 352 (406)
T PRK15402 314 AGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGML 352 (406)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHH
Confidence 778888998887776665554433 458899988887654
No 153
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.03 E-value=4.8e-09 Score=74.81 Aligned_cols=98 Identities=12% Similarity=0.158 Sum_probs=80.1
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHH
Q psy6141 40 SPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALP 119 (144)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 119 (144)
+.+..+.+...+...+...++.+..+++.||+|+|+.+..+..+..+........++.+.+.+..++.|++.+.......
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556778888888899999999999999999999999888888888777667778888888888999988776666666
Q ss_pred HHHhhccCcchhhhhchh
Q psy6141 120 VYLGETVQPEVRGTLGLL 137 (144)
Q Consensus 120 ~~~~~~~~~~~r~~~~~~ 137 (144)
.+..|..|++.+++..+.
T Consensus 330 ~~~~~~~~~~~~at~~~~ 347 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLI 347 (396)
T ss_pred HHHHHhCCcceEEEeehH
Confidence 777888888887775544
No 154
>KOG2325|consensus
Probab=99.02 E-value=2.5e-09 Score=77.44 Aligned_cols=137 Identities=18% Similarity=0.106 Sum_probs=111.4
Q ss_pred cchhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcc-hhhHhhh
Q psy6141 2 KSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGR-RTTILST 80 (144)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~-r~~~~~~ 80 (144)
+.+|+.+.+..+.+++.........+..-.|.+. -|.+.+.+-.|++.++..++..++++..|+...|.+. |++++.+
T Consensus 30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~-lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s 108 (488)
T KOG2325|consen 30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQK-LDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVS 108 (488)
T ss_pred CCchHhHHHHHHHHHHHhhhheEEEeecchhhhh-cCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHH
Confidence 4678888888999999988888877766555550 1366777889999999999999999999999999987 8999999
Q ss_pred chHHHHHHHHH-HH---hc-hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141 81 GLPFIVSFLLI-AL---AN-GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF 140 (144)
Q Consensus 81 ~~~~~~~~~~~-~~---~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 140 (144)
.++.+++.++. .. .+ ..+.++++|++.|+|.|.. +..-.|+++..-.++|.++.+....
T Consensus 109 ~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~ 172 (488)
T KOG2325|consen 109 FLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSG 172 (488)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhh
Confidence 99999998887 33 23 5778999999999998764 5677899998888888877665443
No 155
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.02 E-value=3.9e-09 Score=75.54 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=84.6
Q ss_pred ccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh-hcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHH
Q psy6141 27 PAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES-LGRRTTILSTGLPFIVSFLLIALANGVPMILAGRC 105 (144)
Q Consensus 27 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (144)
...|.+.+ +.+.++.+.++..+...++........+++.|| ++.|+.+..+.....++.......++.+.+.+...
T Consensus 229 ~~~p~~~~---~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 305 (400)
T PRK11646 229 LMLPIMVN---DIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLIC 305 (400)
T ss_pred HhhhhhHH---hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45677766 444466788888777777666666666666654 66666667777777777777777777777777777
Q ss_pred HhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 106 VAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 106 ~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
+.+.+.+...+...+.+.|..|+++|++..++.+..
T Consensus 306 l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~ 341 (400)
T PRK11646 306 LFYIGSIIAEPARETLSASLADARARGSYMGFSRLG 341 (400)
T ss_pred HHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHH
Confidence 888888888888889999999999999999987654
No 156
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.02 E-value=4.6e-09 Score=74.40 Aligned_cols=135 Identities=19% Similarity=0.138 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhh--cchhhHhhhc-h
Q psy6141 6 LASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESL--GRRTTILSTG-L 82 (144)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--g~r~~~~~~~-~ 82 (144)
..++.++++..........+.-+.|.|+. |..|.|..+..+..+.+=.+.+.|.++.|+++||+ |||...-+.. +
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~--e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~ 329 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLS--EVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFML 329 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHH--HhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 34677888888888999999999999988 37889999999999999999999999999999995 6666654433 3
Q ss_pred HHHHHHHHHHHh--chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 83 PFIVSFLLIALA--NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 83 ~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
...++....-.+ +|++...++.++.|+..-+.+-+......|..|++--|++.|+...+.
T Consensus 330 ~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~ 391 (448)
T COG2271 330 LITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFA 391 (448)
T ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHH
Confidence 333333333333 356788888899999887777788889999999999999998876554
No 157
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.01 E-value=2.5e-09 Score=75.72 Aligned_cols=105 Identities=19% Similarity=0.224 Sum_probs=95.7
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhh
Q psy6141 38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLA 117 (144)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 117 (144)
++|++..|...+....++..+++++++|++.||+|.|+++..+.++..+..+...+......+.++..+.|...|..++.
T Consensus 282 ~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~ 361 (438)
T COG2270 282 DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQAS 361 (438)
T ss_pred HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHH
Confidence 79999999999999999999999999999999999999999998888887777777777777777889999999999999
Q ss_pred HHHHHhhccCcchhhhhchhhhhhc
Q psy6141 118 LPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 118 ~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
.-++..+..|+++-++..|+++.++
T Consensus 362 SRSy~~~lvp~~k~~~fFglyaltg 386 (438)
T COG2270 362 SRSYLARLVPKGKEGRFFGLYALTG 386 (438)
T ss_pred HHHHHHHhCCCccccceeehhhhhh
Confidence 9999999999999999999988764
No 158
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.01 E-value=4.9e-09 Score=74.88 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=81.6
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhh
Q psy6141 38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLA 117 (144)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 117 (144)
.+|.++.+.+.......++.+++.+..+++.||.++|+.+..+. ...+........++++...+..++.|++.+...+.
T Consensus 235 ~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~ 313 (393)
T PRK11195 235 ALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGFFVVP 313 (393)
T ss_pred HcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhh
Confidence 67889999999999999999999999999999999988777664 33333444455666776777778889998888888
Q ss_pred HHHHHhhccCcch-hhhhchhhhhhc
Q psy6141 118 LPVYLGETVQPEV-RGTLGLLPTFLG 142 (144)
Q Consensus 118 ~~~~~~~~~~~~~-r~~~~~~~~~~~ 142 (144)
..+..+|..|+|+ +|++.++.+...
T Consensus 314 ~~~~~q~~~~~~~~~g~~~a~~~~~~ 339 (393)
T PRK11195 314 MNALLQHRGHVLVGAGHSIAVQNFNE 339 (393)
T ss_pred HHHHHHhhCcccccchhHHHHHhHHH
Confidence 8888888766654 688877766543
No 159
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.00 E-value=5.5e-09 Score=72.75 Aligned_cols=117 Identities=18% Similarity=0.237 Sum_probs=104.5
Q ss_pred hhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHH
Q psy6141 20 FASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPM 99 (144)
Q Consensus 20 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (144)
-....+.|.++++.+ +.+.|.+..+..++...+.....+++..++..|+|.++.+..+.++..++..+-... +.+.
T Consensus 26 ~~itsvgPLL~~Ir~---~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~ 101 (395)
T COG2807 26 PAITSVGPLLDEIRQ---DLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPL 101 (395)
T ss_pred hhhhhhhhhHHHHHH---HhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHH
Confidence 355667788888888 999999999999999999999999999999999999999999999999998888776 7788
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 100 ILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 100 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
++.+..+.|.+.+..+...+..+.|.||+| -+..+++++..
T Consensus 102 L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~s 142 (395)
T COG2807 102 LFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTS 142 (395)
T ss_pred HHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHH
Confidence 888999999999999999999999999875 57788777654
No 160
>KOG0253|consensus
Probab=99.00 E-value=5.8e-10 Score=78.01 Aligned_cols=130 Identities=20% Similarity=0.162 Sum_probs=107.2
Q ss_pred hHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHH
Q psy6141 5 VLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPF 84 (144)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~ 84 (144)
+-.....+.+...........+...|...+ .++.+..+..++....+++..+++..+|..+|++|||+......+..
T Consensus 77 ~yl~~~ag~gwmad~m~~m~~s~i~~~l~~---~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t 153 (528)
T KOG0253|consen 77 WYLFFVAGMGWMADAMEMMLLSLILPALDE---VWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVT 153 (528)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHh---hhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHH
Confidence 334444445555554444445555566655 88999899999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhh
Q psy6141 85 IVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLP 138 (144)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~ 138 (144)
.+..++...++|+..+.+.|.+.|++.|+ .|...++-.|..|..+|...+-+.
T Consensus 154 ~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~ 206 (528)
T KOG0253|consen 154 GVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS 206 (528)
T ss_pred HHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH
Confidence 88889999999999999999999999998 788888889999999998765443
No 161
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.99 E-value=5.5e-09 Score=74.85 Aligned_cols=114 Identities=13% Similarity=0.089 Sum_probs=89.2
Q ss_pred HHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhc-chhhHhhhchHHHHHHHH
Q psy6141 12 SLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLG-RRTTILSTGLPFIVSFLL 90 (144)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g-~r~~~~~~~~~~~~~~~~ 90 (144)
....+..........|+.|.+.+ +.+.|.+|+|.+.+...+..+++++++|.++||.+ +||.+.+..+..++....
T Consensus 8 s~~~f~~f~~~G~~~p~~~~~L~---~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~ 84 (400)
T PF03825_consen 8 SLMYFLYFFAYGAFLPYLPLYLE---SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLL 84 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Confidence 34445555666777888999998 88999999999999999999999999999999986 466666666666666666
Q ss_pred HHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCc
Q psy6141 91 IALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQP 128 (144)
Q Consensus 91 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 128 (144)
....++++.+.....+..+......|...++..+...+
T Consensus 85 ~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~ 122 (400)
T PF03825_consen 85 LAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD 122 (400)
T ss_pred HHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc
Confidence 66677888777777777777777777777777776653
No 162
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.98 E-value=5.1e-09 Score=75.67 Aligned_cols=130 Identities=16% Similarity=0.092 Sum_probs=78.8
Q ss_pred HHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhh--cchhhH-hhhchHHHHH
Q psy6141 11 VSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESL--GRRTTI-LSTGLPFIVS 87 (144)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--g~r~~~-~~~~~~~~~~ 87 (144)
+....+...........+.|.+.++ +.+.+..+.+...+...++..++.++.|+++||+ ++|+.. ....+.....
T Consensus 248 ~~~~~~~~~~~~~~~~~~~p~~l~~--~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~ 325 (434)
T PRK11663 248 LSFSYVLVYVVRAAINDWGNLYMSE--TLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLS 325 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHH
Confidence 3333333333444455677888752 6799999999999999999999999999999998 333332 2211111111
Q ss_pred HHHHH-H-hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 88 FLLIA-L-ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 88 ~~~~~-~-~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
..... . ..+.....+..+..|++.............|.+|+++|+++.++.+...
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 382 (434)
T PRK11663 326 VGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFA 382 (434)
T ss_pred HHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHH
Confidence 11111 1 2233333333444454433223334557789999999999999887654
No 163
>PRK09848 glucuronide transporter; Provisional
Probab=98.97 E-value=1.3e-08 Score=73.84 Aligned_cols=116 Identities=15% Similarity=0.095 Sum_probs=83.9
Q ss_pred cccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh--chHHHHH
Q psy6141 24 YTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA--NGVPMIL 101 (144)
Q Consensus 24 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 101 (144)
......|.+.++ .++.++...++......++.+++.++.+++.||+|+|+.+..+.++..++.+...+. ++.+.+.
T Consensus 246 ~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~ 323 (448)
T PRK09848 246 AVSASSLFYVRY--VLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVAL 323 (448)
T ss_pred HHhhhheeeEee--ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHH
Confidence 333445555552 566665555554555567788899999999999999999999888887777666554 3566666
Q ss_pred HHHHHhhhhhhhhhhhHHHHHhhccCcch-------hhhhchhhhhh
Q psy6141 102 AGRCVAGFCVGIASLALPVYLGETVQPEV-------RGTLGLLPTFL 141 (144)
Q Consensus 102 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~-------r~~~~~~~~~~ 141 (144)
+...+.|++.+...+...+..+|..|+++ +|...++.+..
T Consensus 324 ~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~ 370 (448)
T PRK09848 324 VALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFT 370 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHH
Confidence 67788899999999988999999887643 36666665543
No 164
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.97 E-value=5.7e-09 Score=75.47 Aligned_cols=117 Identities=11% Similarity=0.046 Sum_probs=73.6
Q ss_pred hcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHH---HHHHHHH--hchH
Q psy6141 23 AYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIV---SFLLIAL--ANGV 97 (144)
Q Consensus 23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~---~~~~~~~--~~~~ 97 (144)
.....+.|.+.++ +.+.++.+.++......++..++.+..|++.||+++++....+...... +...... ..+.
T Consensus 268 ~~~~~~~p~~l~~--~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (438)
T TIGR00712 268 YGVLDWSPTYLKE--VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNP 345 (438)
T ss_pred HHHHHhHHHHHHH--ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCch
Confidence 3455678888872 5688888999999999999999999999999999754432223222211 1111111 1233
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 98 PMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 98 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
+......+..|.+.............|.+|+++|+++.|+.+..
T Consensus 346 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 389 (438)
T TIGR00712 346 LVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF 389 (438)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchH
Confidence 33333344445443222222234678999999999999988654
No 165
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.96 E-value=8.1e-09 Score=69.29 Aligned_cols=116 Identities=17% Similarity=0.133 Sum_probs=90.3
Q ss_pred hhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh------
Q psy6141 21 ASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA------ 94 (144)
Q Consensus 21 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~------ 94 (144)
..+.+..+-|.+++ .+|+|.+|...+.....+|.-++ ++.|.+.|++|++.++.++.+...++......+
T Consensus 17 t~Y~Fs~yS~~Lk~---~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~ 92 (250)
T PF06813_consen 17 TTYTFSAYSPQLKS---RLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIP 92 (250)
T ss_pred cccchhhhhHHHHH---HhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccC
Confidence 45556667788777 89999999999999999998875 888999999999999999999999988766542
Q ss_pred -chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 95 -NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 95 -~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
.++|.+.+...+.|.+.+..+........+.||+ +||++.++....
T Consensus 93 ~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~ 139 (250)
T PF06813_consen 93 SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGF 139 (250)
T ss_pred ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHH
Confidence 3455665566666666666666666677788875 799988875543
No 166
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.96 E-value=7.7e-09 Score=73.63 Aligned_cols=112 Identities=16% Similarity=0.009 Sum_probs=78.0
Q ss_pred ccccccccCCCCCCCCcchhHHHHHHHH-HHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH------hchHHH
Q psy6141 27 PAIPSMNQMGSRVSPTEEEASWIGSLMP-LSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL------ANGVPM 99 (144)
Q Consensus 27 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~------~~~~~~ 99 (144)
.+.+.+.+ |.|.++++.+....... ...+++.++.|++.||+|+|+.+..+.....+....... .++...
T Consensus 229 ~~~~~~l~---~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (390)
T TIGR02718 229 GLSKLYLV---DAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAV 305 (390)
T ss_pred HHhhHHHH---hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHH
Confidence 34566666 67999999999888775 466778999999999999999988766555333222221 122333
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHhhccCc-chhhhhchhhhhh
Q psy6141 100 ILAGRCVAGFCVGIASLALPVYLGETVQP-EVRGTLGLLPTFL 141 (144)
Q Consensus 100 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~ 141 (144)
......+.+++.+...+.......+..++ +++++..++.+..
T Consensus 306 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (390)
T TIGR02718 306 AWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQST 348 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 34444556677777777777777777766 7889988877654
No 167
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.96 E-value=1.4e-08 Score=70.44 Aligned_cols=120 Identities=11% Similarity=0.049 Sum_probs=89.5
Q ss_pred HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHH
Q psy6141 9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSF 88 (144)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 88 (144)
....+..+.+.........+.+.+.++.+.++.++++.+...+.+..+..++.+..+++.||+|+||.+..+..+..++.
T Consensus 143 ~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~ 222 (310)
T TIGR01272 143 VLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLS 222 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 33444444444445556667788876322468899999999999999999999999999999999998888877777766
Q ss_pred HHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcc
Q psy6141 89 LLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPE 129 (144)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~ 129 (144)
......++... .....+.|++.+..+|...+...+.+|++
T Consensus 223 ~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~~ 262 (310)
T TIGR01272 223 IGAALTHGYVA-MWFVLALGLFNSIMFPTIFSLALNALGRH 262 (310)
T ss_pred HHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 55544444332 23555789999999999888888888764
No 168
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.95 E-value=1.3e-08 Score=70.91 Aligned_cols=97 Identities=19% Similarity=0.258 Sum_probs=81.2
Q ss_pred ccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHH
Q psy6141 25 TSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGR 104 (144)
Q Consensus 25 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (144)
-.|+.....+ +++++..+++.+.........+..++.|.++||+|||+..+..+++...+++ .-..++++.++++|
T Consensus 53 QGpY~Y~LY~---~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GR 128 (354)
T PF05631_consen 53 QGPYLYALYE---SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGR 128 (354)
T ss_pred hcchhHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHH
Confidence 3444444445 7899999999999999999999999999999999999999999999998886 44558899999999
Q ss_pred HHhhhhhhhhhhhHHHHH-hhc
Q psy6141 105 CVAGFCVGIASLALPVYL-GET 125 (144)
Q Consensus 105 ~~~g~~~g~~~~~~~~~~-~~~ 125 (144)
++.|++.......-.++. .|+
T Consensus 129 vlgGiaTSLLfS~FEsW~V~Eh 150 (354)
T PF05631_consen 129 VLGGIATSLLFSAFESWMVHEH 150 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988877766644 444
No 169
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.95 E-value=3.5e-09 Score=77.46 Aligned_cols=115 Identities=20% Similarity=0.062 Sum_probs=75.4
Q ss_pred ccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchh-------hHhhhchHHHHHHHHHHHhchH
Q psy6141 25 TSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRT-------TILSTGLPFIVSFLLIALANGV 97 (144)
Q Consensus 25 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~-------~~~~~~~~~~~~~~~~~~~~~~ 97 (144)
.....|.+..+ +.+.+..+.+...+...++..++.+++|+++||++||+ .......+..+........++.
T Consensus 271 ~~~~~p~~l~~--~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~ 348 (476)
T PLN00028 271 MDNIIAEYFYD--RFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSL 348 (476)
T ss_pred HHhHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchH
Confidence 33456776552 67899999999999999999999999999999998762 2222222222223333344555
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 98 PMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 98 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
+...+...+.+++.+...+....+..|.. +++|+...++.....
T Consensus 349 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g 392 (476)
T PLN00028 349 GAAIVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGG 392 (476)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccc
Confidence 55555555666665555555555666664 568898888875543
No 170
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.93 E-value=2.7e-09 Score=75.35 Aligned_cols=129 Identities=18% Similarity=0.126 Sum_probs=92.4
Q ss_pred HHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHH
Q psy6141 7 ASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIV 86 (144)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~ 86 (144)
..+.+++.++...-....++..+|.+.++ +++.++.+.+...........+..+.+|+++||+|.+|+........++
T Consensus 219 ~~W~lsllY~~tFG~Fvgfs~~l~~~~~~--~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~ 296 (417)
T COG2223 219 DTWLLSLLYFATFGGFVGFSAYLPMYLVT--QFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMAL 296 (417)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHH
Confidence 44555666665555666677788988884 8999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHh-------chHHHHH----HHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 87 SFLLIALA-------NGVPMIL----AGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 87 ~~~~~~~~-------~~~~~~~----~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
+.....+. .+....+ ...++.|+++|.. ...+...+|+ +-|.+.|+....+
T Consensus 297 ~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsv----fk~Ip~if~~-~~G~v~G~vga~G 358 (417)
T COG2223 297 AAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSV----FKMIPVIFPK-ETGAVTGIVGAIG 358 (417)
T ss_pred HHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchh----eeechHHHHh-hhhHHHHHHHHhc
Confidence 77776654 2333333 3445555555554 4455555544 4566666655444
No 171
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.92 E-value=1.8e-08 Score=71.16 Aligned_cols=111 Identities=12% Similarity=0.040 Sum_probs=75.1
Q ss_pred ccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHH---H-hchHHHHHH
Q psy6141 27 PAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIA---L-ANGVPMILA 102 (144)
Q Consensus 27 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~ 102 (144)
...|.+..+ +.+.++++.+.......++..++.++.+++.||+|||+.+..+.....+...... . ..+.+...+
T Consensus 215 ~~~~~~~~~--~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (377)
T PRK11102 215 TAGPFVYIE--LNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVV 292 (377)
T ss_pred HcCHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344544441 5788999999999999999999999999999999999998877765444332222 1 223444444
Q ss_pred HHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141 103 GRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF 140 (144)
Q Consensus 103 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 140 (144)
...+.+.+.+...+.......|..| ++|++..++...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~ 329 (377)
T PRK11102 293 GVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGT 329 (377)
T ss_pred HHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHH
Confidence 4444444444445555566777766 788888877654
No 172
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=98.91 E-value=5.8e-09 Score=75.24 Aligned_cols=139 Identities=17% Similarity=0.111 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHhhhhhhhhcccccccccccC--CCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh-hcchhhHhhhc
Q psy6141 5 VLASLTVSLGSMIVGFASAYTSPAIPSMNQM--GSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES-LGRRTTILSTG 81 (144)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~g~r~~~~~~~ 81 (144)
-+....+....+..-++++.+-..+..|+.. .+.++++++++.-..+.+..-.=+...++|+++|| +|+|+++..+.
T Consensus 20 Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGa 99 (498)
T COG3104 20 PRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGA 99 (498)
T ss_pred CchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 3444555566666666666655555555442 11356888888777777777777889999999999 59999999999
Q ss_pred hHHHHHHHHHHHhc--hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcch--hhhhchhhhhhcc
Q psy6141 82 LPFIVSFLLIALAN--GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEV--RGTLGLLPTFLGN 143 (144)
Q Consensus 82 ~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~ 143 (144)
++..++.+..+.++ +...+.++..+.++|.|..=+.....+.|.+|+++ |-...++.+...|
T Consensus 100 il~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iN 165 (498)
T COG3104 100 ILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGIN 165 (498)
T ss_pred HHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEee
Confidence 99999999999874 78889999999999999999999999999999754 4446666655444
No 173
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.91 E-value=2.1e-08 Score=71.71 Aligned_cols=105 Identities=5% Similarity=0.054 Sum_probs=76.4
Q ss_pred ccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhh
Q psy6141 29 IPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAG 108 (144)
Q Consensus 29 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 108 (144)
.|.+.+ +.|.++++.+.......++..++.++.+++.||.+++.......+............++.+.+.+..++.|
T Consensus 240 ~p~~~~---~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G 316 (394)
T PRK10213 240 RPVYMN---LAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWG 316 (394)
T ss_pred HHHHHH---hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 366666 77899999999999999999999999999999965443333333333333444445566777777888899
Q ss_pred hhhhhhhhhHHHHHhhccCcchhhhhchh
Q psy6141 109 FCVGIASLALPVYLGETVQPEVRGTLGLL 137 (144)
Q Consensus 109 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~ 137 (144)
++.+...+..++.+++..|++ +++..+.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 344 (394)
T PRK10213 317 LTFALVPVGWSTWITRSLADQ-AEKAGSI 344 (394)
T ss_pred HHHHhhhHHHHHHHHHHCccc-HHHHHHH
Confidence 999888888888889888744 4444443
No 174
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.90 E-value=1.7e-08 Score=71.53 Aligned_cols=116 Identities=19% Similarity=0.254 Sum_probs=86.2
Q ss_pred hcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh-chHHHHH
Q psy6141 23 AYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA-NGVPMIL 101 (144)
Q Consensus 23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 101 (144)
..+...-|...+ ..|.+.+..+++...+.++..+++..+|++.|| +.|+.+.....+.++......+. ++.+...
T Consensus 229 ~~ftYi~P~L~~---v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~ 304 (394)
T COG2814 229 ALYTYIRPFLES---VAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALAL 304 (394)
T ss_pred hhHHhHHHHHHH---ccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 333334455555 788999999999999999999999999999999 88888888877777776666554 5555666
Q ss_pred HHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhcc
Q psy6141 102 AGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGN 143 (144)
Q Consensus 102 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 143 (144)
+..++.|+..+..........++ ..++.+..+.+++....|
T Consensus 305 ~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~n 345 (394)
T COG2814 305 ALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFN 345 (394)
T ss_pred HHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHH
Confidence 66666777766655555556666 336678888888776554
No 175
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.90 E-value=2.2e-09 Score=78.41 Aligned_cols=129 Identities=13% Similarity=0.043 Sum_probs=93.8
Q ss_pred HHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHh----hhcchhhH-hhhch
Q psy6141 8 SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIE----SLGRRTTI-LSTGL 82 (144)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~g~r~~~-~~~~~ 82 (144)
-+.-+++.+..+.......++++.+..+ ..++++.+.+.+..+..+...+..|+.|.++| |+||||.. +.+.+
T Consensus 8 ~~~yg~g~~~~~~~~~~~~~~l~~yyt~--v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i 85 (473)
T PRK10429 8 KLSYGFGAFGKDFAIGIVYMYLMYYYTD--VVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTL 85 (473)
T ss_pred HHhhccchhHHhHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhH
Confidence 3344555566666666667777777763 67999999999999999999999999999999 56986554 45666
Q ss_pred HHHHHHHHHHHhch------HHHHHHHHHHhhhhhhhhhhhHHHHHhhcc-Ccchhhhhchhh
Q psy6141 83 PFIVSFLLIALANG------VPMILAGRCVAGFCVGIASLALPVYLGETV-QPEVRGTLGLLP 138 (144)
Q Consensus 83 ~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~ 138 (144)
..+++...+...++ ..++.+...+.+.+......+..+...|.. ++++|.+..+..
T Consensus 86 ~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~ 148 (473)
T PRK10429 86 ANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYP 148 (473)
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHH
Confidence 66666554433221 234444555667777777888888999998 588999877763
No 176
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.89 E-value=6.6e-09 Score=74.92 Aligned_cols=115 Identities=16% Similarity=0.136 Sum_probs=90.5
Q ss_pred HHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHH
Q psy6141 12 SLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLI 91 (144)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~ 91 (144)
....+.............+.+.++ .++.+ +..+.......++.+++.+++++++||+|+|+.+..+....+++.+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~y~~~~--vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~ 307 (428)
T PF13347_consen 231 LLAFFLQWLAFALMNTFLPYYFTY--VLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLL 307 (428)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHH--HhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHH
Confidence 333344444444444455555552 34444 566777888999999999999999999999999999999999988887
Q ss_pred HHhc--hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcc
Q psy6141 92 ALAN--GVPMILAGRCVAGFCVGIASLALPVYLGETVQPE 129 (144)
Q Consensus 92 ~~~~--~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~ 129 (144)
.+.+ +.+.+++...+.|++.+......++..+|..+.+
T Consensus 308 ~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~ 347 (428)
T PF13347_consen 308 FFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYD 347 (428)
T ss_pred HHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhH
Confidence 7764 8899999999999999999999999999998854
No 177
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.89 E-value=8.4e-09 Score=56.94 Aligned_cols=69 Identities=17% Similarity=0.181 Sum_probs=59.0
Q ss_pred HHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchH
Q psy6141 12 SLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLP 83 (144)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~ 83 (144)
....+..........|++|.+.+ +.|+|+.+.+.+.++..+...++.+++|.++||.++++..+.....
T Consensus 6 k~~yf~~f~~~g~~~Pfl~~~~~---~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 6 KAFYFFYFAALGCLYPFLPLYLK---QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhh---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 34455566667788899999998 8999999999999999999999999999999999999887765443
No 178
>PRK09669 putative symporter YagG; Provisional
Probab=98.88 E-value=2.9e-09 Score=77.14 Aligned_cols=129 Identities=12% Similarity=0.046 Sum_probs=89.1
Q ss_pred HHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh----hcchhhHh-hhchHH
Q psy6141 10 TVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES----LGRRTTIL-STGLPF 84 (144)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~g~r~~~~-~~~~~~ 84 (144)
.-.++.+..+........+++.+..+ ++|+++.+.+.+..+..+...+..|+.|+++|| +||||..+ .+.+..
T Consensus 13 ~yg~g~~~~~~~~~~~~~~l~~~~t~--~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~ 90 (444)
T PRK09669 13 GYGLGDTACNLVWQTVMLFLAYFYTD--VFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPF 90 (444)
T ss_pred hhcchhhhhhHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHH
Confidence 33444444444444445556666653 899999999999999999999999999999999 77766554 566666
Q ss_pred HHHHHHHHHhch------HHHHHHHHHHhhhhhhhhhhhHHHHHhhcc-Ccchhhhhchhhhh
Q psy6141 85 IVSFLLIALANG------VPMILAGRCVAGFCVGIASLALPVYLGETV-QPEVRGTLGLLPTF 140 (144)
Q Consensus 85 ~~~~~~~~~~~~------~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~ 140 (144)
++........++ ..++.+...+.+.+......+..+..+|+. ++++|.+..+....
T Consensus 91 ~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~ 153 (444)
T PRK09669 91 GVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFA 153 (444)
T ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHH
Confidence 666554444332 344555555666666666777778899987 56788876655443
No 179
>PRK10054 putative transporter; Provisional
Probab=98.88 E-value=1.3e-08 Score=72.80 Aligned_cols=102 Identities=9% Similarity=0.029 Sum_probs=81.7
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh-chHHHHHHHHHHhhhhhhhhhh
Q psy6141 38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA-NGVPMILAGRCVAGFCVGIASL 116 (144)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~ 116 (144)
+.+.+....+.+...........+++.|++.||.++|+.+..+.....++....... ++.+.+.+...+.|++.+...+
T Consensus 238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p 317 (395)
T PRK10054 238 DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAP 317 (395)
T ss_pred ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHh
Confidence 445566677777777777777888899999999999999888887777777666654 5677677788899999888788
Q ss_pred hHHHHHhhccCcchhhhhchhhh
Q psy6141 117 ALPVYLGETVQPEVRGTLGLLPT 139 (144)
Q Consensus 117 ~~~~~~~~~~~~~~r~~~~~~~~ 139 (144)
.....+.|..|++.|++..+..+
T Consensus 318 ~~~~~~~~~~p~~~~~~~~~~~~ 340 (395)
T PRK10054 318 GEYMLIDHIAPPGMKASYFSAQS 340 (395)
T ss_pred hHHHHHHHhCCcccceehHhHHH
Confidence 88889999999999998876443
No 180
>KOG0569|consensus
Probab=98.88 E-value=3.6e-08 Score=71.78 Aligned_cols=114 Identities=19% Similarity=0.129 Sum_probs=84.2
Q ss_pred ccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh----chH--H
Q psy6141 25 TSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA----NGV--P 98 (144)
Q Consensus 25 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~----~~~--~ 98 (144)
...+...+.+ +.|.+.++..++.....+...+..+.+..+.||.|||+.++.+.....+..+.+... +.. |
T Consensus 289 i~~Yst~i~~---~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (485)
T KOG0569|consen 289 IFFYSTSIFK---TAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSW 365 (485)
T ss_pred eHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3334444555 789999999999999999999999999999999999999999998888877766542 111 1
Q ss_pred ---HHHHHHHHhhhhhh-hhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 99 ---MILAGRCVAGFCVG-IASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 99 ---~~~~~~~~~g~~~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
..+++.++..+..+ +..|+.+-+.+|++|++.|+.+.++....
T Consensus 366 ~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~ 412 (485)
T KOG0569|consen 366 LSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAV 412 (485)
T ss_pred HHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHH
Confidence 12233333333322 22577888999999999999988876543
No 181
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.87 E-value=3.9e-08 Score=72.28 Aligned_cols=104 Identities=19% Similarity=0.196 Sum_probs=73.6
Q ss_pred CCCCCcchhHHHH-HHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHH---HHh-chHHHHHHHHHHhhhhhh
Q psy6141 38 RVSPTEEEASWIG-SLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLI---ALA-NGVPMILAGRCVAGFCVG 112 (144)
Q Consensus 38 ~~~~~~~~~~~~~-~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~g~~~g 112 (144)
+.|.++++.+... ....++.+++.++.|++.||+|+|+.+..+.+...+..... ... ++.+.+....++..++.|
T Consensus 252 ~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g 331 (491)
T PRK11010 252 GVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGG 331 (491)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 6899999999987 46668999999999999999999888776555444433222 222 344444445556555555
Q ss_pred hhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 113 IASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
...+...++..+..|++.+++..++.+..
T Consensus 332 ~~~~~~~a~~~~l~~~~~~~t~~gl~~s~ 360 (491)
T PRK11010 332 MGTAAFVALLMTLCNKSFSATQFALLSAL 360 (491)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 55566677888888888888777766553
No 182
>PRK10133 L-fucose transporter; Provisional
Probab=98.87 E-value=3.4e-08 Score=71.58 Aligned_cols=99 Identities=13% Similarity=0.000 Sum_probs=79.3
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhh
Q psy6141 38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLA 117 (144)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 117 (144)
..|.++.+.+.......++..++.+..+++.||+|+|+.+..+.++..+......+.++.+ ......+.|++.+...|.
T Consensus 289 ~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~P~ 367 (438)
T PRK10133 289 IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQYPT 367 (438)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999999998888777766665555555432 244567789999999999
Q ss_pred HHHHHhhccCcchhhhhchhh
Q psy6141 118 LPVYLGETVQPEVRGTLGLLP 138 (144)
Q Consensus 118 ~~~~~~~~~~~~~r~~~~~~~ 138 (144)
......|.+|++ .+.+.++.
T Consensus 368 ~~s~a~~~~~~~-~~~as~l~ 387 (438)
T PRK10133 368 IFSLGIKNLGQD-TKYGSSFI 387 (438)
T ss_pred HHHHHHcccchh-hccchhHH
Confidence 999999988764 44444443
No 183
>PRK11043 putative transporter; Provisional
Probab=98.84 E-value=5.5e-08 Score=69.46 Aligned_cols=111 Identities=15% Similarity=0.150 Sum_probs=80.4
Q ss_pred ccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHH---HH--hchHHHHH
Q psy6141 27 PAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLI---AL--ANGVPMIL 101 (144)
Q Consensus 27 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~---~~--~~~~~~~~ 101 (144)
...|.+.+ +.+.++.+.++......++..++....+++.||+|+|+..........++.... .. .++.+...
T Consensus 224 ~~~p~~~~---~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (401)
T PRK11043 224 TGSPFILE---QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLL 300 (401)
T ss_pred HHhHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHH
Confidence 34676766 678898899988888888899999999999999999987655544444433222 11 23455555
Q ss_pred HHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 102 AGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 102 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
+...+.|++.+...+.......|..| ++|+++.++.+..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~ 339 (401)
T PRK11043 301 IPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTL 339 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHH
Confidence 56677788888888887777777776 5789988887654
No 184
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=98.83 E-value=1.3e-08 Score=56.78 Aligned_cols=80 Identities=20% Similarity=0.237 Sum_probs=71.5
Q ss_pred hhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchH
Q psy6141 18 VGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGV 97 (144)
Q Consensus 18 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 97 (144)
.+.....+.|.+|.+.+ |.+.|.++.+++.+...+|+++|.+...++.++..+++.+..+.+...+....+++.++.
T Consensus 4 mGigRFayTplLP~M~~---~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~ 80 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQA---DGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSF 80 (85)
T ss_pred hhhHHHHHHhHhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 35566778899999999 999999999999999999999999999999999888899999999999999999988876
Q ss_pred HHH
Q psy6141 98 PMI 100 (144)
Q Consensus 98 ~~~ 100 (144)
+.+
T Consensus 81 ~~w 83 (85)
T PF06779_consen 81 WLW 83 (85)
T ss_pred HHH
Confidence 654
No 185
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.83 E-value=8.6e-08 Score=70.11 Aligned_cols=87 Identities=14% Similarity=0.103 Sum_probs=67.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH-----hchHHHHHHHHHHhhhhhhhhhh
Q psy6141 42 TEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL-----ANGVPMILAGRCVAGFCVGIASL 116 (144)
Q Consensus 42 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~g~~~~ 116 (144)
+++..+.+.....++.+++.++++++.||+|+|+.+..+..+.+++.+.... .++.+.+.+..++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777888999999999999999999998877766655544432 34456666677888899888888
Q ss_pred hHHHHHhhccCc
Q psy6141 117 ALPVYLGETVQP 128 (144)
Q Consensus 117 ~~~~~~~~~~~~ 128 (144)
...++++|..|.
T Consensus 344 ~~~am~ad~id~ 355 (473)
T PRK10429 344 LQVIMVADTVDY 355 (473)
T ss_pred HHHHHHhhhhhh
Confidence 889999999763
No 186
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.79 E-value=4.6e-08 Score=71.13 Aligned_cols=115 Identities=11% Similarity=0.021 Sum_probs=66.6
Q ss_pred HHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHH
Q psy6141 10 TVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFL 89 (144)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 89 (144)
.+++..+...-....+...+|.+.++ ++ +............+...+..+++|+++||+|+||++..+.+...+...
T Consensus 256 llslly~~tFG~fvg~s~~lp~~~~~--~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~ 331 (462)
T PRK15034 256 LLSLLYLATFGSFIGFSAGFAMLAKT--QF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSA 331 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--Hc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 33333333333334344456666652 22 333333334455677888999999999999999999988876666654
Q ss_pred HHHH-h-----chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCc
Q psy6141 90 LIAL-A-----NGVPMILAGRCVAGFCVGIASLALPVYLGETVQP 128 (144)
Q Consensus 90 ~~~~-~-----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 128 (144)
.... . .+.+.+.+..+...++.|..+.....++.+.+|+
T Consensus 332 ~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~ 376 (462)
T PRK15034 332 LLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQ 376 (462)
T ss_pred HHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhh
Confidence 3222 1 2455555544444444444455555566666663
No 187
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.76 E-value=9.7e-08 Score=68.50 Aligned_cols=127 Identities=20% Similarity=0.235 Sum_probs=100.1
Q ss_pred HHHHhhhhhhhhcccccccccccCCCCCC-CCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHH
Q psy6141 12 SLGSMIVGFASAYTSPAIPSMNQMGSRVS-PTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLL 90 (144)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 90 (144)
.+..+..+........+.+.+.+ +.+ .+.+..+...+...+.-++.-...+++..|+|.|+.+.++.+..++=...
T Consensus 213 ll~~~l~~~~~~~~~~f~~~yl~---~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l 289 (400)
T PF03825_consen 213 LLAAFLIGISHAAYYTFFSIYLQ---ELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLL 289 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 33444555556666667777777 666 66677788888888899999999999999999999999999888887777
Q ss_pred HHHh-chHHHHHHH----HHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 91 IALA-NGVPMILAG----RCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 91 ~~~~-~~~~~~~~~----~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
.+.. ++.+...+. ..+.|+..+........++.|..|++.|+++.++++..
T Consensus 290 ~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~ 345 (400)
T PF03825_consen 290 YAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSAL 345 (400)
T ss_pred HHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence 7766 454443332 35689999999999999999999999999999987654
No 188
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.76 E-value=6e-08 Score=69.08 Aligned_cols=129 Identities=11% Similarity=0.055 Sum_probs=90.9
Q ss_pred HHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHH--HHHHHHHHHHHHhhHH-HHhhhcchhhHhhhchHH
Q psy6141 8 SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIG--SLMPLSALFGGMAGGP-LIESLGRRTTILSTGLPF 84 (144)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~g~-l~d~~g~r~~~~~~~~~~ 84 (144)
...+...++..+.......+.+|.+.+ +.|.++++.+... .......++.+|+++. ..||.||||..++.....
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~---~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~ 79 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLR---EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCL 79 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHH
Confidence 445666778889988999999999999 8899999999973 5567778888888844 799999999975554332
Q ss_pred HH-HHHHHH-H--hch-HHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhh
Q psy6141 85 IV-SFLLIA-L--ANG-VPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPT 139 (144)
Q Consensus 85 ~~-~~~~~~-~--~~~-~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~ 139 (144)
.. ...... . ..+ ..++.....+.++.....++....+..|..++++++...+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~ 139 (390)
T TIGR02718 80 VSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQI 139 (390)
T ss_pred HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHH
Confidence 22 222222 1 222 3333444455666777778888888899998888877655543
No 189
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.76 E-value=1e-07 Score=64.40 Aligned_cols=118 Identities=26% Similarity=0.296 Sum_probs=89.5
Q ss_pred hhhhcccccccccccCCCCCCCCc--chhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhch-
Q psy6141 20 FASAYTSPAIPSMNQMGSRVSPTE--EEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANG- 96 (144)
Q Consensus 20 ~~~~~~~~~~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~- 96 (144)
..........+.+.. +.+.+. ...++..+...++..++.++.|.+.||.|||+.+..+......+.....+..+
T Consensus 16 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (338)
T COG0477 16 LDLGLLSPALPLLLS---TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNV 92 (338)
T ss_pred HhcchHHHHHHHHHH---HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccc
Confidence 444444445566555 444444 46788999999999999999999999999998877777655555555555555
Q ss_pred -HHHHHHHHHHhhhhhhhhhhhHHHHHhhccCc-chhhhhchhhhh
Q psy6141 97 -VPMILAGRCVAGFCVGIASLALPVYLGETVQP-EVRGTLGLLPTF 140 (144)
Q Consensus 97 -~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~r~~~~~~~~~ 140 (144)
.+.+.+.|...|++.+...+....+..|..|+ ++|+...+....
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTL 138 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 88888999999999998899999999999998 667776665443
No 190
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.72 E-value=1.5e-07 Score=68.92 Aligned_cols=122 Identities=11% Similarity=0.054 Sum_probs=83.3
Q ss_pred HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhc-----chhhHhhhchH
Q psy6141 9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLG-----RRTTILSTGLP 83 (144)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g-----~r~~~~~~~~~ 83 (144)
..+...++..+.. ......++.+.++ ++|.++++.+...+...+...+ .+++|.++||++ ||+.++++.++
T Consensus 29 ~~~~~~y~~qGl~-~l~~~~~~~~l~~--~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 29 AIGLQVLFVKGIA-GLMRLPLSPMLTD--DLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSGLL 104 (468)
T ss_pred HHHHHHHHHhhHH-HHhhhhhhHHHHH--hcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHHHHHH
Confidence 4445566777777 4444444444441 7899999999999999998888 555999999997 56656666555
Q ss_pred HH-HHHHHHHHhchHH-HHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhc
Q psy6141 84 FI-VSFLLIALANGVP-MILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLG 135 (144)
Q Consensus 84 ~~-~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~ 135 (144)
.. +........++.. ...+..++.+++.+..+.....+..|..+ |++....
T Consensus 105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~ 157 (468)
T TIGR00788 105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGP 157 (468)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCC
Confidence 42 3322223334433 33447788999999999999999999998 5554433
No 191
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.71 E-value=2.1e-07 Score=66.22 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=69.4
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH-hchHHHHHHHHHHhhhhhhhhhh
Q psy6141 38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL-ANGVPMILAGRCVAGFCVGIASL 116 (144)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~ 116 (144)
..|.++++.++..+...++..++.++.+++.||+|+|+.+..+..+..++.+.... .++.+...+..++.+.+.....+
T Consensus 229 ~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 308 (382)
T PRK10091 229 ISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSA 308 (382)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhH
Confidence 57889999999999999999999999999999999999988887777776655443 44455555555556665544444
Q ss_pred hHH-HHHhhccCcchhhhh
Q psy6141 117 ALP-VYLGETVQPEVRGTL 134 (144)
Q Consensus 117 ~~~-~~~~~~~~~~~r~~~ 134 (144)
... ....+..|++.++..
T Consensus 309 ~~~~~~~~~~~~~~~~~~~ 327 (382)
T PRK10091 309 PLQILLLQNAKGGELLGAA 327 (382)
T ss_pred HHHHHHHHhCCcchHHHHH
Confidence 333 344455556666654
No 192
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.70 E-value=2.5e-07 Score=66.21 Aligned_cols=100 Identities=17% Similarity=0.178 Sum_probs=71.3
Q ss_pred CCCCCcchhHHHHHHHH-HHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHH---HHh-chHHHHHHHH----HHhh
Q psy6141 38 RVSPTEEEASWIGSLMP-LSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLI---ALA-NGVPMILAGR----CVAG 108 (144)
Q Consensus 38 ~~~~~~~~~~~~~~~~~-~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~----~~~g 108 (144)
+.|.++++.+++..... .+..++.++.+++.||+|+|+.+..+.....+..+.. ... ++.+.+.+.. +..|
T Consensus 239 ~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g 318 (402)
T PRK11902 239 GAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGG 318 (402)
T ss_pred hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 68899999998876544 5689999999999999999998876666555543332 233 3445444443 3456
Q ss_pred hhhhhhhhhHHHHHhhccCcchhhhhchh
Q psy6141 109 FCVGIASLALPVYLGETVQPEVRGTLGLL 137 (144)
Q Consensus 109 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~ 137 (144)
++.+...+....++.+.+|.++++...+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (402)
T PRK11902 319 MGTAAFVALLMALCNRSFSATQYALLSAL 347 (402)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 66677778888899999998887754443
No 193
>KOG0253|consensus
Probab=98.69 E-value=1.6e-08 Score=70.95 Aligned_cols=91 Identities=20% Similarity=0.145 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchh
Q psy6141 52 LMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVR 131 (144)
Q Consensus 52 ~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r 131 (144)
...+.-..|.++.+++.||+|||+++..+.+++.+..++...+.+.....+..+..-++..+.+...+.|..|++|++.|
T Consensus 389 itslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavR 468 (528)
T KOG0253|consen 389 ITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVR 468 (528)
T ss_pred HHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhh
Confidence 34566678889999999999999999999999999988888765443333333334444445556678899999999999
Q ss_pred hhhchhhhhhc
Q psy6141 132 GTLGLLPTFLG 142 (144)
Q Consensus 132 ~~~~~~~~~~~ 142 (144)
+++.|..+...
T Consensus 469 atgvGtcSsma 479 (528)
T KOG0253|consen 469 ATGVGTCSSMA 479 (528)
T ss_pred hcchhhhhhHH
Confidence 99988876654
No 194
>KOG2563|consensus
Probab=98.66 E-value=1.4e-07 Score=67.58 Aligned_cols=136 Identities=14% Similarity=0.111 Sum_probs=104.7
Q ss_pred cchhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhc
Q psy6141 2 KSAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTG 81 (144)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~ 81 (144)
+|||......++..+..++....+.+..-.... .++ +.+..-|...++.+.+..-.+.+-|+.||+|-|...+++.
T Consensus 41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~---~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt 116 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNS---FYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT 116 (480)
T ss_pred hhHhHHHHHHHHHHhcCcchheeehhHHHHHHH---Hhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence 477888777777777777666655554433333 445 6667788899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhc------hHH--HHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 82 LPFIVSFLLIALAN------GVP--MILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 82 ~~~~~~~~~~~~~~------~~~--~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
.+..++..+-..+. .++ ....+..+.+...-....+......-|||++||..+..+....
T Consensus 117 ~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~ 184 (480)
T KOG2563|consen 117 VLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMG 184 (480)
T ss_pred HHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhc
Confidence 99999998877642 333 4556777777777777777677778899999999988765543
No 195
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.65 E-value=3.9e-07 Score=64.94 Aligned_cols=100 Identities=13% Similarity=0.064 Sum_probs=68.5
Q ss_pred ccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhh
Q psy6141 29 IPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAG 108 (144)
Q Consensus 29 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 108 (144)
.|.+.++ +++.++.+.+.......++.+++.++.+++.||+|||+.+..+.....++.......++.+.......+.+
T Consensus 226 ~~~~~~~--~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 303 (392)
T PRK10473 226 SPVLLME--QMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLIC 303 (392)
T ss_pred CHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4544431 67888888999899999999999999999999999999999888887777776666555444333333434
Q ss_pred hhhhhhhhhHHHHHhhccCcchhh
Q psy6141 109 FCVGIASLALPVYLGETVQPEVRG 132 (144)
Q Consensus 109 ~~~g~~~~~~~~~~~~~~~~~~r~ 132 (144)
.+.+...+. ....+..|.++|+
T Consensus 304 ~g~~~~~~~--~~~~~~~~~~~~~ 325 (392)
T PRK10473 304 AGFSVGFGV--AMSQALGPFSLRA 325 (392)
T ss_pred HHHHHHhHH--HHHHHhccCcccc
Confidence 443333222 2335555655553
No 196
>PRK09848 glucuronide transporter; Provisional
Probab=98.65 E-value=6.9e-08 Score=70.04 Aligned_cols=129 Identities=19% Similarity=0.232 Sum_probs=84.1
Q ss_pred HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhh----cchhhH-hhhchH
Q psy6141 9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESL----GRRTTI-LSTGLP 83 (144)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~----g~r~~~-~~~~~~ 83 (144)
+.-+++.+..+.......++++.+.++ ..++++.+.+.+.+...+...+..++.|+++||. ||||.. +.+.+.
T Consensus 11 ~~yg~g~~~~~~~~~~~~~~l~~y~~~--~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~ 88 (448)
T PRK09848 11 VGYSLGDVANNFAFAMGALFLLSYYTD--VAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAP 88 (448)
T ss_pred HhhccchHHhHHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHH
Confidence 334444444455455555555556662 6799999999999999999999999999999996 777765 445444
Q ss_pred HHHHHHHHH-Hh----c--hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccC-cchhhhhchhhh
Q psy6141 84 FIVSFLLIA-LA----N--GVPMILAGRCVAGFCVGIASLALPVYLGETVQ-PEVRGTLGLLPT 139 (144)
Q Consensus 84 ~~~~~~~~~-~~----~--~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~ 139 (144)
..+...... .. + ......+...+.+.+.+...+...+...|..+ +++|.+..+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~ 152 (448)
T PRK09848 89 LMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARG 152 (448)
T ss_pred HHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHH
Confidence 444333322 11 1 12233444566777777777777777777654 567887765543
No 197
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.65 E-value=4.8e-07 Score=66.74 Aligned_cols=94 Identities=13% Similarity=0.015 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHHHHHHhh----HHHHhhhcchhhHhhhchHHHHHHHHHHHhch---------HHHHHHHHHHhhhhhh
Q psy6141 46 ASWIGSLMPLSALFGGMAG----GPLIESLGRRTTILSTGLPFIVSFLLIALANG---------VPMILAGRCVAGFCVG 112 (144)
Q Consensus 46 ~~~~~~~~~~~~~i~~~~~----g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~g 112 (144)
.+++++...+..++..++. +++.||.++++.+.++.++.+++........+ .++++...++.|++.+
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 5666777776667776666 55555555557778888888888877766543 5678889999999999
Q ss_pred hhhhhHHHHHhhccCcchhhhhchhhh
Q psy6141 113 IASLALPVYLGETVQPEVRGTLGLLPT 139 (144)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~r~~~~~~~~ 139 (144)
...|....++.+..|++.|++.+|.+.
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~ 424 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWF 424 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 999999999999999999999999875
No 198
>PRK09669 putative symporter YagG; Provisional
Probab=98.64 E-value=5.6e-07 Score=65.30 Aligned_cols=84 Identities=18% Similarity=0.180 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHH-H-hchHHHHHHHHHHhhhhhhhhhhhHHHHH
Q psy6141 45 EASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIA-L-ANGVPMILAGRCVAGFCVGIASLALPVYL 122 (144)
Q Consensus 45 ~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 122 (144)
..+.......+..+++.++++++.||+|+|+.+..+.+...+...... . .++.+.+.+..++.|++.+...+..++.+
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ 344 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF 344 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566778889999999999999999998877765554333222 2 35666677778889999999999999999
Q ss_pred hhccCc
Q psy6141 123 GETVQP 128 (144)
Q Consensus 123 ~~~~~~ 128 (144)
+|..|.
T Consensus 345 ad~~d~ 350 (444)
T PRK09669 345 SDVVDY 350 (444)
T ss_pred Hhhhhh
Confidence 999873
No 199
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.64 E-value=2.2e-07 Score=67.66 Aligned_cols=132 Identities=10% Similarity=0.011 Sum_probs=81.6
Q ss_pred HHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhH--------hh
Q psy6141 8 SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTI--------LS 79 (144)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~--------~~ 79 (144)
.+...+..+...........++|.+.++ +++.+..+.++..+...++..++.++.|+++||+++|+.. ..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~lp~~l~~--~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 340 (465)
T TIGR00894 263 VWAIWFAIFGHFWLYTILPTYLPTFISW--VLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFN 340 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 4455555555555566666788988762 6789999999999999999999999999999998755321 11
Q ss_pred hchHH--HHHHHHHHH-hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 80 TGLPF--IVSFLLIAL-ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 80 ~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
+.... .+..+.... ..+....++...+.+.+.+...+.......|..|+ .+|...++.+...
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~ 405 (465)
T TIGR00894 341 GIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPG 405 (465)
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHH
Confidence 11111 111111112 23344444444455555554444444455666655 7888888877654
No 200
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.64 E-value=6e-07 Score=65.12 Aligned_cols=105 Identities=19% Similarity=0.165 Sum_probs=84.1
Q ss_pred hhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhc--hHHH
Q psy6141 22 SAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALAN--GVPM 99 (144)
Q Consensus 22 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~ 99 (144)
..........+.++ .++.++.+..........+.+++.+++.++.+|+|+|+.+..+.++.+++.....+.+ +.+.
T Consensus 252 ~~i~~s~~~yy~~y--~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l 329 (467)
T COG2211 252 FNIRGSIMVYYVTY--VLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVL 329 (467)
T ss_pred HHHHhhhhheeEEE--EcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHH
Confidence 33334444444442 5565666666777778888888899999999999999999999999999988887754 6778
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHhhccCc
Q psy6141 100 ILAGRCVAGFCVGIASLALPVYLGETVQP 128 (144)
Q Consensus 100 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 128 (144)
.++..++.+++.+...+..++.++|..+.
T Consensus 330 ~~~~~~i~~~g~~~~~~l~wam~~d~vDy 358 (467)
T COG2211 330 IVVALIIAGVGTGIANPLPWAMVADTVDY 358 (467)
T ss_pred HHHHHHHHHHHhhccccccHHHhcchhhH
Confidence 88888999999999999999999998774
No 201
>KOG2504|consensus
Probab=98.62 E-value=3.3e-07 Score=67.66 Aligned_cols=128 Identities=21% Similarity=0.225 Sum_probs=104.3
Q ss_pred HHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcc--hhhHhhhchHHHHHH
Q psy6141 11 VSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGR--RTTILSTGLPFIVSF 88 (144)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~--r~~~~~~~~~~~~~~ 88 (144)
..+..............++|.+.+ +.+.+..+.....+...+...++.+..|+++|+... +....++.+...+..
T Consensus 303 ~~~~~~~~~~g~~~p~~~l~~~~~---~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~ 379 (509)
T KOG2504|consen 303 LALSNLFAYLGFNVPFVYLPSYAK---SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLAR 379 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHH
Confidence 334444444445556667888888 889999999999999999999999999999999884 444456666666777
Q ss_pred HHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 89 LLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
..+.+.++++.+...-.+.|++.|...+.....+.|..+.++-..+.|+...+
T Consensus 380 ~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~ 432 (509)
T KOG2504|consen 380 LFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLF 432 (509)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHH
Confidence 77788999999999999999999999988888999999999888888776554
No 202
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.61 E-value=4.6e-07 Score=66.46 Aligned_cols=96 Identities=17% Similarity=0.074 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHhhhcc-----hhhH--hhhchHHHHHHHHHHH---------hchHHHHHHHHHHhhh
Q psy6141 46 ASWIGSLMPLSALFGGMAGGPLIESLGR-----RTTI--LSTGLPFIVSFLLIAL---------ANGVPMILAGRCVAGF 109 (144)
Q Consensus 46 ~~~~~~~~~~~~~i~~~~~g~l~d~~g~-----r~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~ 109 (144)
.++..+...+..++.+++..++-.|.+| +... .++.++.+++.....+ ..|+++++...++.++
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 5678888888888888886654444433 3333 5677777777666654 3588999999999999
Q ss_pred hhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 110 CVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 110 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
+.....|....+..|..|++.|+++++++...
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~ 425 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLA 425 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988754
No 203
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.60 E-value=4.8e-07 Score=63.33 Aligned_cols=130 Identities=18% Similarity=0.089 Sum_probs=99.3
Q ss_pred HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhh-cchhhHhhhchHHHHH
Q psy6141 9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESL-GRRTTILSTGLPFIVS 87 (144)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-g~r~~~~~~~~~~~~~ 87 (144)
+-+.+..-..+...+....++|.+.. |.|.|..+.+...+...+..+...+....+.+|. ++|+..........++
T Consensus 211 W~vtLfmGlqS~~~Y~~~~WLP~ili---~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G 287 (395)
T COG2807 211 WQVTLFMGLQSLLYYIVIGWLPAILI---DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG 287 (395)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH---HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 44444444555566677778999998 8999999999999999999999999999999974 5677777777777777
Q ss_pred HHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcc-hhhhhchhhhhhc
Q psy6141 88 FLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPE-VRGTLGLLPTFLG 142 (144)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~ 142 (144)
...+.+.+....+.- .++.|++.|..++.....+.+..++. +-++..++.|..+
T Consensus 288 ~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~G 342 (395)
T COG2807 288 LVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVG 342 (395)
T ss_pred HHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhh
Confidence 777766544332222 48899999999999999888887754 4456777766554
No 204
>PRK11462 putative transporter; Provisional
Probab=98.59 E-value=1.7e-07 Score=68.48 Aligned_cols=131 Identities=10% Similarity=-0.009 Sum_probs=95.2
Q ss_pred HHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh----hcchhhHh-hhchHH
Q psy6141 10 TVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES----LGRRTTIL-STGLPF 84 (144)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~g~r~~~~-~~~~~~ 84 (144)
.-+++.+..+........+++.+..+ ..++++...+.+..+.-+-..+.-|+.|.++|| +||||..+ .+.+..
T Consensus 13 ~Yg~g~~~~~~~~~~~~~~l~~fyt~--~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~ 90 (460)
T PRK11462 13 GYGMGDAASHIIFDNVMLYMMFFYTD--IFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPF 90 (460)
T ss_pred hhccchhhhhHHHHHHHHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHH
Confidence 33444444455555555566666653 789999999999999999999999999999997 68877765 455677
Q ss_pred HHHHHHHHHhch------HHHHHHHHHHhhhhhhhhhhhHHHHHhhccC-cchhhhhchhhhhhc
Q psy6141 85 IVSFLLIALANG------VPMILAGRCVAGFCVGIASLALPVYLGETVQ-PEVRGTLGLLPTFLG 142 (144)
Q Consensus 85 ~~~~~~~~~~~~------~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~ 142 (144)
+++...+...++ ...+.+...+...+......+..++..|..+ ++||.+..++...+.
T Consensus 91 ~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~ 155 (460)
T PRK11462 91 GIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLA 155 (460)
T ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 766655544332 3345555566778888888888889999887 788998888766543
No 205
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.57 E-value=6.6e-07 Score=64.11 Aligned_cols=101 Identities=13% Similarity=0.112 Sum_probs=86.6
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhh
Q psy6141 38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLA 117 (144)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 117 (144)
+.+.++...|...+..-+.-.+...+.+++.+|+|.|+.++++.....+=...++++++++.+.+...+.|+-.+.....
T Consensus 253 ~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva 332 (412)
T PF01306_consen 253 SAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVA 332 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 34455667899999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHHhhccCcchhhhhchhh
Q psy6141 118 LPVYLGETVQPEVRGTLGLLP 138 (144)
Q Consensus 118 ~~~~~~~~~~~~~r~~~~~~~ 138 (144)
...|+++.+|+|..++...+.
T Consensus 333 ~fkYI~~~fd~rlsAt~y~v~ 353 (412)
T PF01306_consen 333 AFKYITAHFDKRLSATLYLVG 353 (412)
T ss_dssp HHHHHHHHS-GGGHHHHHHHH
T ss_pred HHHHHHHhCCHhHHHHHHHHH
Confidence 999999999999887755543
No 206
>KOG4686|consensus
Probab=98.57 E-value=5e-09 Score=71.26 Aligned_cols=135 Identities=15% Similarity=0.058 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh-hcchhhHhhhch
Q psy6141 4 AVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES-LGRRTTILSTGL 82 (144)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~g~r~~~~~~~~ 82 (144)
+......+|+..+-..+.+..-....-.+.. +.+++.++..++.+.++.-..+-.+++|++.|| +|-|...++-+.
T Consensus 42 r~m~lv~mc~lgfgsyfcyd~p~alq~~fk~---d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~ 118 (459)
T KOG4686|consen 42 RFMALVFMCLLGFGSYFCYDAPGALQIDFKL---DSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCI 118 (459)
T ss_pred HHHHHHHHHHhcccceeecCCchhhhhhhhc---ccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHH
Confidence 3444455555555554444443333333333 677888888899999999999999999999998 577777777777
Q ss_pred HHHHHHHHHHH---hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 83 PFIVSFLLIAL---ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 83 ~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
...++.++.+. .+.+|.+..+|++.|+|.-....+.+.+..-+|..|+...+.|+....
T Consensus 119 fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSv 180 (459)
T KOG4686|consen 119 FVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSV 180 (459)
T ss_pred HHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHH
Confidence 77777777764 688999999999999998887788899999999999998888876543
No 207
>KOG4686|consensus
Probab=98.57 E-value=5.4e-07 Score=61.60 Aligned_cols=132 Identities=12% Similarity=0.014 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhc-hH
Q psy6141 5 VLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTG-LP 83 (144)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~-~~ 83 (144)
.+.+..+++......+...... |.+.+ +.+|.|+.+.+-+.+.......+..++.|.++||.|++...+.+. +.
T Consensus 266 fw~~~iicv~yyva~fPFi~lg---~~fF~--~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~ 340 (459)
T KOG4686|consen 266 FWVLVIICVLYYVAWFPFITLG---PMFFQ--KRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACIL 340 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh---HHHHH--HhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHH
Confidence 3444555555555554444443 44444 279999999999999999999999999999999999987765543 33
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhcc
Q psy6141 84 FIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGN 143 (144)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 143 (144)
...+.....++ .+.-.....+.|..........+..++.+.|+++.|++.+..+..-|
T Consensus 341 tl~~H~~l~Ft--~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqN 398 (459)
T KOG4686|consen 341 TLLGHSGLFFT--FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQN 398 (459)
T ss_pred HHHHhhhHHhh--hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHh
Confidence 33344444432 22233456778888877777778888999999999999998877654
No 208
>KOG0254|consensus
Probab=98.57 E-value=1.3e-06 Score=64.68 Aligned_cols=128 Identities=11% Similarity=0.023 Sum_probs=84.5
Q ss_pred HHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHH
Q psy6141 10 TVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFL 89 (144)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 89 (144)
.+.+..+...........+.+.+.+ ..+.+.+. ........+...++..+...+.||+|||+.++.+.....++.+
T Consensus 299 ~~~l~~fqq~tG~~~~~~Y~~~if~---~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~ 374 (513)
T KOG0254|consen 299 GLLLQLFQQLTGINYVFYYSTTIFK---SAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLV 374 (513)
T ss_pred HHHHHHHHHHhCCceEEeehHHHHH---hcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHH
Confidence 3344444444445556666777766 56665443 5556667777778888889999999999999999999999888
Q ss_pred HHHHhc----h---------HHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 90 LIALAN----G---------VPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 90 ~~~~~~----~---------~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
..+... + ...+....+.......+..+..+.+.+|.+|.+.|+++.++....
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~ 439 (513)
T KOG0254|consen 375 ILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAV 439 (513)
T ss_pred HHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHH
Confidence 776421 0 111222222222333334566677899999999999988776543
No 209
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.54 E-value=1.5e-06 Score=62.67 Aligned_cols=117 Identities=9% Similarity=-0.092 Sum_probs=81.5
Q ss_pred HHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH
Q psy6141 14 GSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL 93 (144)
Q Consensus 14 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 93 (144)
..+...........+++.+.++ ...+.+....+...+....+..++.+.++++.||+++||.+.+......+..+....
T Consensus 240 ~~f~yvg~e~~~~s~l~~y~~~-~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~ 318 (410)
T TIGR00885 240 AQFFYVGVQIMCWTFIIQYAVR-LIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIF 318 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344667777651 012333333444566666788899999999999999999988888888887777777
Q ss_pred hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhh
Q psy6141 94 ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRG 132 (144)
Q Consensus 94 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~ 132 (144)
.++... .....+.|++.+..+|.......+..+++.+.
T Consensus 319 ~~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~ 356 (410)
T TIGR00885 319 AGGHVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQDTKY 356 (410)
T ss_pred cCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 666444 45567778888888899999999999877654
No 210
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.52 E-value=3.1e-06 Score=53.00 Aligned_cols=92 Identities=12% Similarity=0.106 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccC
Q psy6141 48 WIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQ 127 (144)
Q Consensus 48 ~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ 127 (144)
.-.++......++.++.+.+.+++|.|+.++++.+...+..... +-++.+.++.+..+.|++.+..+.....++.+..+
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~ 119 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST 119 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence 34555666677888899999999999999999988888655543 45667888899999999999999999999999999
Q ss_pred cchhhhhchhhhh
Q psy6141 128 PEVRGTLGLLPTF 140 (144)
Q Consensus 128 ~~~r~~~~~~~~~ 140 (144)
+++|++-.++...
T Consensus 120 ~~~~~~~~~ifw~ 132 (156)
T PF05978_consen 120 EETIGRNTGIFWA 132 (156)
T ss_pred HHHHhhHHHHHHH
Confidence 9999987776543
No 211
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.51 E-value=2.6e-08 Score=71.83 Aligned_cols=113 Identities=12% Similarity=0.093 Sum_probs=86.3
Q ss_pred ccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHh----hhcchhhHh-hhchHHHHHHHHHHHh-c-----
Q psy6141 27 PAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIE----SLGRRTTIL-STGLPFIVSFLLIALA-N----- 95 (144)
Q Consensus 27 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~g~r~~~~-~~~~~~~~~~~~~~~~-~----- 95 (144)
.+++.+..+ ..++++...+.+.....+...+..|+.|.++| |+||||..+ .+.+...++...+... +
T Consensus 22 ~~~~~f~~~--~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~ 99 (428)
T PF13347_consen 22 SYLLYFYTD--VLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSF 99 (428)
T ss_pred HHHHHHHHH--HcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhh
Confidence 344444442 78999999999999999999999999999999 799888766 5667777766666554 3
Q ss_pred --hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccC-cchhhhhchhhhhh
Q psy6141 96 --GVPMILAGRCVAGFCVGIASLALPVYLGETVQ-PEVRGTLGLLPTFL 141 (144)
Q Consensus 96 --~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~ 141 (144)
...++.+..++..++......+..++..|..+ +++|.+..+..+.+
T Consensus 100 ~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~ 148 (428)
T PF13347_consen 100 TAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIF 148 (428)
T ss_pred hhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHH
Confidence 12334566666788888888888999999998 56898877765543
No 212
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.49 E-value=2.1e-06 Score=63.30 Aligned_cols=95 Identities=13% Similarity=0.010 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHhhhcchhh-------HhhhchHHHHHHHHHH-----Hh-----chHHHHHHHHHHhhh
Q psy6141 47 SWIGSLMPLSALFGGMAGGPLIESLGRRTT-------ILSTGLPFIVSFLLIA-----LA-----NGVPMILAGRCVAGF 109 (144)
Q Consensus 47 ~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~-------~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~~~g~ 109 (144)
.++++...+..++..++.+++.||.++|+. +..+.++..++.+... .. .+.+++....++.|+
T Consensus 312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~ 391 (489)
T PRK10207 312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL 391 (489)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 455666667788899999999999998873 5566666665554321 11 346777788899999
Q ss_pred hhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 110 CVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 110 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
+.+...+.....+.+..|++.++.+++++...
T Consensus 392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~ 423 (489)
T PRK10207 392 GELFISALGLAMIAALVPQHLMGFILGMWFLT 423 (489)
T ss_pred HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988754
No 213
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.46 E-value=2.5e-06 Score=60.88 Aligned_cols=110 Identities=15% Similarity=-0.034 Sum_probs=74.3
Q ss_pred ccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch-HHHHHHHHHHH--hchHHHHHHHHH
Q psy6141 29 IPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL-PFIVSFLLIAL--ANGVPMILAGRC 105 (144)
Q Consensus 29 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~ 105 (144)
.|.+.++ .++.++.+.++......++..++.++.+++.||.+++........ ...+....... ..+.+.+.....
T Consensus 230 ~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (394)
T PRK11652 230 SGVLMGA--VLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAA 307 (394)
T ss_pred ChHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 4445541 478888888998888889999999999999999984333222211 11111111111 234556667778
Q ss_pred HhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 106 VAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 106 ~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
+.|++.+...+....+..|.+| +++++..++.+..
T Consensus 308 ~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~ 342 (394)
T PRK11652 308 LFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGL 342 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHH
Confidence 8899988888888888899887 4678887776543
No 214
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.45 E-value=2.6e-07 Score=66.17 Aligned_cols=117 Identities=15% Similarity=0.061 Sum_probs=73.5
Q ss_pred HHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHH
Q psy6141 7 ASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIV 86 (144)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~ 86 (144)
..+......+...+......|..|.++++ +.|++.+|.|.+.+...+..++.+|+.|.++||.|.||.++.......+
T Consensus 8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~--~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~ 85 (412)
T PF01306_consen 8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQ--VAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLL 85 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcc--ccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHH
Confidence 33444555666666678888889999872 4899999999999999999999999999999999987776544322221
Q ss_pred --HH-HHHHH----hchH-HHHHHHHHHhhhhhhhhhhhHHHHHhhc
Q psy6141 87 --SF-LLIAL----ANGV-PMILAGRCVAGFCVGIASLALPVYLGET 125 (144)
Q Consensus 87 --~~-~~~~~----~~~~-~~~~~~~~~~g~~~g~~~~~~~~~~~~~ 125 (144)
+. ....+ ..|. ...+++....|+......++..++..+.
T Consensus 86 l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~ 132 (412)
T PF01306_consen 86 LFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERV 132 (412)
T ss_dssp TCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence 11 22122 2232 2334444445555555556666554433
No 215
>PRK11462 putative transporter; Provisional
Probab=98.35 E-value=1.7e-05 Score=58.09 Aligned_cols=84 Identities=17% Similarity=0.065 Sum_probs=55.1
Q ss_pred chhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh-c-hHHHHHHHHHHhhhhhhhhhhhHHHH
Q psy6141 44 EEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA-N-GVPMILAGRCVAGFCVGIASLALPVY 121 (144)
Q Consensus 44 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~g~~~g~~~~~~~~~ 121 (144)
+..+.+.....++.+++.+++++++||+|+|+.+..+.....+......+. . +.+.+.+..++.|++.+...+.....
T Consensus 263 ~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m 342 (460)
T PRK11462 263 EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVM 342 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777888889999999999999999988765444333323333222 2 23233444456677777766666777
Q ss_pred HhhccC
Q psy6141 122 LGETVQ 127 (144)
Q Consensus 122 ~~~~~~ 127 (144)
.+|..+
T Consensus 343 ~ad~~d 348 (460)
T PRK11462 343 MSDTVD 348 (460)
T ss_pred HHHhHh
Confidence 777766
No 216
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.30 E-value=1.5e-06 Score=63.71 Aligned_cols=106 Identities=12% Similarity=0.066 Sum_probs=87.6
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH----------hchHHHHHHHHHHh
Q psy6141 38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL----------ANGVPMILAGRCVA 107 (144)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 107 (144)
..|.++.+.+.......++.+++....+++.+|++.|+.+.++.++.+++...... .++.+.......+.
T Consensus 282 ~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~ 361 (468)
T TIGR00788 282 CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIA 361 (468)
T ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHH
Confidence 78999999999999999999999999999999999999999988888877644321 13333445556788
Q ss_pred hhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhcc
Q psy6141 108 GFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGN 143 (144)
Q Consensus 108 g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 143 (144)
+++.+....+...++++..|++++++..++.+...+
T Consensus 362 ~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~ 397 (468)
T TIGR00788 362 EVLAQLKFMPFLVLLARLCPSGCESSVFALLASILH 397 (468)
T ss_pred HHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHH
Confidence 888888888889999999999999998888776543
No 217
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.23 E-value=7e-05 Score=53.51 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=86.9
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHh-hhcchhhHhhhchHHHHHHHHHHH---hchHHHHHHHHHHhhhhhhh
Q psy6141 38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIE-SLGRRTTILSTGLPFIVSFLLIAL---ANGVPMILAGRCVAGFCVGI 113 (144)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d-~~g~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~g~ 113 (144)
.++++..|....+.....|.+++....|++.. |.++|+...+++...+.+...... ..+.+.+....++.|++.|.
T Consensus 238 Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~ 317 (403)
T PF03209_consen 238 VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGL 317 (403)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhH
Confidence 78999999999999999999999999998887 577777777788777777655443 45788888899999999999
Q ss_pred hhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141 114 ASLALPVYLGETVQPEVRGTLGLLPTF 140 (144)
Q Consensus 114 ~~~~~~~~~~~~~~~~~r~~~~~~~~~ 140 (144)
........+.|..++++.|..+|.+..
T Consensus 318 f~vgals~mM~lt~~~~aG~~mG~WGa 344 (403)
T PF03209_consen 318 FTVGALSLMMDLTSAGRAGLFMGAWGA 344 (403)
T ss_pred HHHHHHHHHHhCCCCcchhHHHHHHHH
Confidence 988888899999999988888877543
No 218
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.16 E-value=3.9e-06 Score=61.00 Aligned_cols=135 Identities=15% Similarity=0.140 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh----hcchhhH-hhh
Q psy6141 6 LASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES----LGRRTTI-LST 80 (144)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~g~r~~~-~~~ 80 (144)
+.-+.-..+-+..+........+++.+..+ ..|+++...|.+..+.-+-..+.-|+.|.+.|| +||+|.. +.+
T Consensus 12 ~eki~Yg~gd~~~~~~~~~~~~yLl~fYTd--v~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g 89 (467)
T COG2211 12 KEKIGYGLGDFASNFAFGIVVLYLLFFYTD--VFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWG 89 (467)
T ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHHHhc--ccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHH
Confidence 333444555566666666666777777774 899999999999999999999999999999998 6776655 556
Q ss_pred chHHHHHHHHHHHhch------HHHHHHHHHHhhhhhhhhhhhHHHHHhhccC-cchhhhhchhhhhhc
Q psy6141 81 GLPFIVSFLLIALANG------VPMILAGRCVAGFCVGIASLALPVYLGETVQ-PEVRGTLGLLPTFLG 142 (144)
Q Consensus 81 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~ 142 (144)
.+..++....+..+++ .....+...+.+++......+..++..|+.+ ++||.+..+..+.+.
T Consensus 90 ~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~ 158 (467)
T COG2211 90 AIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFA 158 (467)
T ss_pred hHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHH
Confidence 6777777777666553 4455566778888888888888889999876 688998888766543
No 219
>KOG3762|consensus
Probab=98.14 E-value=4.2e-06 Score=61.44 Aligned_cols=115 Identities=14% Similarity=0.047 Sum_probs=97.1
Q ss_pred hcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHH
Q psy6141 23 AYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILA 102 (144)
Q Consensus 23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (144)
......+-..++ +.+-.+...|........+-++.-++.+++..|+|+-+++.+++.....=.+...+..|+|+.+-
T Consensus 388 ~lv~tFLfWHle---d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLP 464 (618)
T KOG3762|consen 388 GLVFTFLFWHLE---DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLP 464 (618)
T ss_pred HHHHHHHHHHHh---hcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheee
Confidence 333334444555 67777777788888888888999999999999999999999888888877777788899999999
Q ss_pred HHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141 103 GRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF 140 (144)
Q Consensus 103 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 140 (144)
.-+++|+..+..+....+|+++..||+.|.++.++.+.
T Consensus 465 ieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g 502 (618)
T KOG3762|consen 465 IEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQG 502 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999998887653
No 220
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.10 E-value=6.4e-05 Score=53.61 Aligned_cols=119 Identities=15% Similarity=0.106 Sum_probs=96.8
Q ss_pred HHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHH
Q psy6141 8 SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVS 87 (144)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 87 (144)
.....++.+++--.......+++.+.++ ..+.+..+.....+.+..+.++|.+.+.++..|+...|.+....+.....
T Consensus 238 ~~~gvl~~FlYVG~Eva~gsfl~~y~~~--~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill 315 (422)
T COG0738 238 LRLGVLAIFLYVGAEVAIGSFLVSYLEE--LLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILL 315 (422)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 3444556666655666677788888882 37889999999999999999999999999999999999999888888888
Q ss_pred HHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcc
Q psy6141 88 FLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPE 129 (144)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~ 129 (144)
++...++++...+ ...++.|...+..+|...+...+..|++
T Consensus 316 ~~~~~l~~g~v~~-~~l~~ig~F~simfPTIfslal~~l~~~ 356 (422)
T COG0738 316 LLAVALIGGVVAL-YALFLIGLFNSIMFPTIFSLALKNLGEH 356 (422)
T ss_pred HHHHHHhcChHHH-HHHHHHHHHhHHHHHHHHHHHHhccCcc
Confidence 8888888884443 3557889999999999999999999844
No 221
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.10 E-value=2.8e-08 Score=71.89 Aligned_cols=113 Identities=16% Similarity=0.097 Sum_probs=70.4
Q ss_pred ccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHH--H---hch---
Q psy6141 25 TSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIA--L---ANG--- 96 (144)
Q Consensus 25 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~--~---~~~--- 96 (144)
...+.|.+.+ +.+.++. -.......+...++.+....+.||+|||+.++.+....++...... . .++
T Consensus 272 ~~~~~~~i~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (451)
T PF00083_consen 272 IFYYSPSIFE---NAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSW 346 (451)
T ss_pred cccccccccc---ccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3344555555 5555554 2233344455667777778999999999999988888777766653 1 121
Q ss_pred -HHHHHHHHHHhhhhhh-hhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 97 -VPMILAGRCVAGFCVG-IASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 97 -~~~~~~~~~~~g~~~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
-...++...+.....+ +..+....+.+|.+|++.|.++.++.+...
T Consensus 347 ~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~ 394 (451)
T PF00083_consen 347 WSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVG 394 (451)
T ss_pred cccccceeeeeccccccccccccccccccccccccccccccccccccc
Confidence 1111122222222222 334566688899999999999998877644
No 222
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.00 E-value=0.00012 Score=52.84 Aligned_cols=115 Identities=10% Similarity=0.032 Sum_probs=67.2
Q ss_pred hcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHH-----HhchH
Q psy6141 23 AYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIA-----LANGV 97 (144)
Q Consensus 23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~-----~~~~~ 97 (144)
.......|.+.++ ..+.++.+.++.......+..++..+.+++.++..+++..........++..... ..+++
T Consensus 235 ~~~~~~~P~~l~~--~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~ 312 (413)
T PRK15403 235 MSWVAVSPVILID--AGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVW 312 (413)
T ss_pred HHHHHhChHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccH
Confidence 3444456777662 5689999999988888888888888888876555444443222222222222222 12334
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141 98 PMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF 140 (144)
Q Consensus 98 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 140 (144)
+..++..++.+++.+...+...... ..-++..+|++.++...
T Consensus 313 ~~~~~~~~l~~~G~~~~~p~~~~~a-l~~~~~~~G~a~a~~~~ 354 (413)
T PRK15403 313 LWSVLGTSLYAFGIGLIFPTLFRFT-LFSNNLPKGTVSASLNM 354 (413)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH-hccCCCCCcHHHHHHHH
Confidence 3456677778888888777665422 22122346766665543
No 223
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.97 E-value=0.00011 Score=54.33 Aligned_cols=96 Identities=14% Similarity=0.162 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHhhhcch-h-h-----HhhhchHHHHHHHHHHHh---------chHHHHHHHHHHhh
Q psy6141 45 EASWIGSLMPLSALFGGMAGGPLIESLGRR-T-T-----ILSTGLPFIVSFLLIALA---------NGVPMILAGRCVAG 108 (144)
Q Consensus 45 ~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r-~-~-----~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g 108 (144)
..++.++...+..++..|+.+++=.|.++| | . +.++.++..++.+.+..+ .+.++++...+++.
T Consensus 309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t 388 (493)
T PRK15462 309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG 388 (493)
T ss_pred CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence 356778888888888888888886666332 1 1 455666667666555431 25677888889999
Q ss_pred hhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141 109 FCVGIASLALPVYLGETVQPEVRGTLGLLPTF 140 (144)
Q Consensus 109 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 140 (144)
++.-+..|...+.+++..|++.|+..+|.+..
T Consensus 389 ~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l 420 (493)
T PRK15462 389 FAELFIDPVAMSQITRIEIPGVTGVLTGIYML 420 (493)
T ss_pred HHHHHHChHHHHHHHHhChHHHHHHHHHHHHH
Confidence 99999999999999999999999999998754
No 224
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.95 E-value=4.8e-05 Score=57.18 Aligned_cols=131 Identities=18% Similarity=0.112 Sum_probs=88.7
Q ss_pred HHHHHHHhhhhhhhhcccccccccccCCCCCCCCc---chhHHHHHHHHHHHHHHHHhhHHHHhhhcchhh-HhhhchHH
Q psy6141 9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTE---EEASWIGSLMPLSALFGGMAGGPLIESLGRRTT-ILSTGLPF 84 (144)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~-~~~~~~~~ 84 (144)
....+..+..+........+.|..... .++.++ .+.++......++..++..+.|.+..+++|-|. ++.+.++.
T Consensus 313 ~~~lvi~fi~G~~~~s~~~l~p~~~~~--vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ 390 (599)
T PF06609_consen 313 AALLVISFISGMNFFSVNILWPQQVVN--VFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLM 390 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--hccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 333445555555555555556665441 222222 356788888899999999999999998887554 45666666
Q ss_pred HHHHHHHHH--hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 85 IVSFLLIAL--ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 85 ~~~~~~~~~--~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
.++.-.++. .+|....+...++.|++.|....+.....+-..|+++-+.+.++...+
T Consensus 391 ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~ 449 (599)
T PF06609_consen 391 TAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSI 449 (599)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHH
Confidence 655444443 245555667788899999998888888888888998888888776543
No 225
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=97.91 E-value=7.4e-05 Score=53.37 Aligned_cols=103 Identities=14% Similarity=0.005 Sum_probs=74.2
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhc-----chhhHhh-hchHHHHHHHHHHH-----hc--------hHH
Q psy6141 38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLG-----RRTTILS-TGLPFIVSFLLIAL-----AN--------GVP 98 (144)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g-----~r~~~~~-~~~~~~~~~~~~~~-----~~--------~~~ 98 (144)
|++.+..-.+.......+... ..+.+|+.+|+.+ ||..+++ +......+..+..+ .. .+.
T Consensus 9 EL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~ 87 (403)
T PF03209_consen 9 ELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWL 87 (403)
T ss_pred HhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHH
Confidence 677777777776666655544 6999999999998 8888765 44444444444332 22 222
Q ss_pred ---HHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 99 ---MILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 99 ---~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
...+...+.|++.+.......+.++|..|+|+|+++.++.+.+
T Consensus 88 g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~M 133 (403)
T PF03209_consen 88 GLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVM 133 (403)
T ss_pred HHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHH
Confidence 2334567788998888899999999999999999998887654
No 226
>KOG2533|consensus
Probab=97.86 E-value=9.3e-05 Score=54.68 Aligned_cols=126 Identities=10% Similarity=0.078 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh----hcchhhHhhhc
Q psy6141 6 LASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES----LGRRTTILSTG 81 (144)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~g~r~~~~~~~ 81 (144)
..++..++..++.....+....++|.+.++ ..+.+..+.........++.+++.+..|.++|| ..+|.......
T Consensus 273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~--~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~ 350 (495)
T KOG2533|consen 273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKS--NGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFL 350 (495)
T ss_pred hhHHHHHHHHHHHhhccccHHHHHHHHHHc--CCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 345667777888888888888899999982 366888999999999999999999999999999 55666555544
Q ss_pred hHHHHHH-HHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhh
Q psy6141 82 LPFIVSF-LLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGT 133 (144)
Q Consensus 82 ~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~ 133 (144)
.+..... ......++.+......+....+.+...+......++....+.|..
T Consensus 351 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~ 403 (495)
T KOG2533|consen 351 CLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKAL 403 (495)
T ss_pred HHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhH
Confidence 4444433 333333334444433444445555556666777777776666544
No 227
>KOG0637|consensus
Probab=97.81 E-value=4.2e-05 Score=55.30 Aligned_cols=133 Identities=20% Similarity=0.189 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh----hcchhhHhhhc
Q psy6141 6 LASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES----LGRRTTILSTG 81 (144)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~g~r~~~~~~~ 81 (144)
+..+.+....+..-+....-..+.|.+.. +.+.+....+.+.....+..++.+|..|..+|| +||||..+...
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~---~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~ 108 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ---SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAG 108 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH---HcCCCcccccccccccccccceecccccccccccccccccccchHHHh
Confidence 44444444455555555666667777777 789988888888888999999999999999998 89999887644
Q ss_pred -hHHHHHHHHHHHhchH-----------------HHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhh-hchhhhhh
Q psy6141 82 -LPFIVSFLLIALANGV-----------------PMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGT-LGLLPTFL 141 (144)
Q Consensus 82 -~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~ 141 (144)
....++..+..+++++ ..+++..-+.=++....+.+.-++..|....++|.+ +++.+..+
T Consensus 109 s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f 187 (498)
T KOG0637|consen 109 SLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFF 187 (498)
T ss_pred hHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHH
Confidence 4444455555554332 123333344445666778888899999988766666 77766554
No 228
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=97.80 E-value=0.00011 Score=56.08 Aligned_cols=105 Identities=14% Similarity=0.176 Sum_probs=80.6
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh-hcchhhHhhhchHHHHHHHHHHHhch--------HHHHHHHHHHhh
Q psy6141 38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIES-LGRRTTILSTGLPFIVSFLLIALANG--------VPMILAGRCVAG 108 (144)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g 108 (144)
.++.+.++...+...+....-+...++|+++|+ +|+++++.++.++..++..+...... ....+++..+..
T Consensus 17 ~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia 96 (654)
T TIGR00926 17 FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIA 96 (654)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHH
Confidence 567788888888888888888899999999999 69999999999999998887766421 123556677788
Q ss_pred hhhhhhhhhHHHHHhhccCcch---hhhhchhhhhhc
Q psy6141 109 FCVGIASLALPVYLGETVQPEV---RGTLGLLPTFLG 142 (144)
Q Consensus 109 ~~~g~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~ 142 (144)
.|.|++-+...+...|.+++++ |.....+.+..+
T Consensus 97 ~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~i 133 (654)
T TIGR00926 97 LGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAI 133 (654)
T ss_pred hhccccccCchhhhHhhcCccchhHHHHHHHHHHHHH
Confidence 8889988989999999988654 344555554443
No 229
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=97.79 E-value=0.00093 Score=49.32 Aligned_cols=96 Identities=8% Similarity=-0.085 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHhhhcc-hhhHhhhchHHHHHHHHHHHhch---------------------HHHHHHHH
Q psy6141 47 SWIGSLMPLSALFGGMAGGPLIESLGR-RTTILSTGLPFIVSFLLIALANG---------------------VPMILAGR 104 (144)
Q Consensus 47 ~~~~~~~~~~~~i~~~~~g~l~d~~g~-r~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~ 104 (144)
.+....+.+...+.+++..++.+|+|+ |+....+.++.+++.....+.++ .+..++..
T Consensus 308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 387 (477)
T TIGR01301 308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF 387 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence 344555666666888889999999995 67768887777777766654332 25667777
Q ss_pred HHhhhhhhhhhhhHHHHHhhccCcch--hhhhchhhhhhc
Q psy6141 105 CVAGFCVGIASLALPVYLGETVQPEV--RGTLGLLPTFLG 142 (144)
Q Consensus 105 ~~~g~~~g~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~ 142 (144)
...|+..+..+...++++++..|++. .|..+|+.+.+.
T Consensus 388 ~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I 427 (477)
T TIGR01301 388 AILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAI 427 (477)
T ss_pred HHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHH
Confidence 88999999999999999999999644 488888887664
No 230
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=97.75 E-value=0.0002 Score=51.50 Aligned_cols=119 Identities=13% Similarity=0.035 Sum_probs=80.1
Q ss_pred hcccccccccccC-CCCCCC----CcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhh-hchHHHHHHHHHHHhch
Q psy6141 23 AYTSPAIPSMNQM-GSRVSP----TEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILS-TGLPFIVSFLLIALANG 96 (144)
Q Consensus 23 ~~~~~~~p~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~-~~~~~~~~~~~~~~~~~ 96 (144)
.....+.|.|.++ ..+-+. +....+...++..+...+-+|..|.++|+.|+||..+. ...+..++.....+.++
T Consensus 32 ivtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~ 111 (438)
T COG2270 32 IVTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPP 111 (438)
T ss_pred eeeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCC
Confidence 3344556666553 111111 22445777888888888999999999999998777654 44444445555555433
Q ss_pred --HH-HHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 97 --VP-MILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 97 --~~-~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
.+ ..++...+..++....+...++++.+..++++-++..++.+..
T Consensus 112 ~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~ 159 (438)
T COG2270 112 GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWAL 159 (438)
T ss_pred CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCccccccccc
Confidence 44 4455567778888888889999999999998888877665443
No 231
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=97.74 E-value=6e-06 Score=61.51 Aligned_cols=130 Identities=14% Similarity=0.080 Sum_probs=2.9
Q ss_pred HHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHH
Q psy6141 10 TVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFL 89 (144)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 89 (144)
..++..+............+..+.+ .++++.++.|++.+.+-++..+..++..++.+|..|-|.+-.+.++.+++.+
T Consensus 7 ~~~~~~~~q~~~~g~~~~~lttiEr---RF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~ 83 (539)
T PF03137_consen 7 FLCLLGLFQMMVSGYVNSSLTTIER---RFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSL 83 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHH
Confidence 3344444455555666666777776 8999999999999999999999999999999998888888888888888877
Q ss_pred HHHHhc--------------------------------------------------hHHHHHHHHHHhhhhhhhhhhhHH
Q psy6141 90 LIALAN--------------------------------------------------GVPMILAGRCVAGFCVGIASLALP 119 (144)
Q Consensus 90 ~~~~~~--------------------------------------------------~~~~~~~~~~~~g~~~g~~~~~~~ 119 (144)
++++.+ -+..++++.++.|+|....+++..
T Consensus 84 l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~ 163 (539)
T PF03137_consen 84 LFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGI 163 (539)
T ss_dssp --------------------------------------------------------------------SSS---------
T ss_pred HHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcccee
Confidence 665300 023467788999999999999999
Q ss_pred HHHhhccCcchhhhhchhhhhhc
Q psy6141 120 VYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 120 ~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
+|+-|..++++-+...|+.+...
T Consensus 164 tYiDDnv~~~~splYiGi~~~~~ 186 (539)
T PF03137_consen 164 TYIDDNVSKKNSPLYIGILYAMS 186 (539)
T ss_dssp -----------------------
T ss_pred eeeccccccccCccchhhhhHHh
Confidence 99999999999888888876653
No 232
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=97.73 E-value=0.00033 Score=51.71 Aligned_cols=86 Identities=19% Similarity=0.116 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhc-hHHHHHHHHHHHh-c-hHHHHHHHHHHhhhhhhhhhhhHHHHH
Q psy6141 46 ASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTG-LPFIVSFLLIALA-N-GVPMILAGRCVAGFCVGIASLALPVYL 122 (144)
Q Consensus 46 ~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~g~~~g~~~~~~~~~~ 122 (144)
.+...++..+...+..|+.|.++|+-|+||.++... .+..+....+.+. + +++...+..++.-++.+......++++
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L 151 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL 151 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466788888999999999999999999888776543 4444455555442 3 344444444555567777788899999
Q ss_pred hhccCcchh
Q psy6141 123 GETVQPEVR 131 (144)
Q Consensus 123 ~~~~~~~~r 131 (144)
.|+.+++++
T Consensus 152 P~la~~~~~ 160 (477)
T PF11700_consen 152 PDLARPEPR 160 (477)
T ss_pred HhhcCCChh
Confidence 999998888
No 233
>KOG2532|consensus
Probab=97.69 E-value=0.00012 Score=53.79 Aligned_cols=66 Identities=11% Similarity=0.078 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcc
Q psy6141 6 LASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGR 73 (144)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~ 73 (144)
..++.+.+..+...+.......+.|.|.++ .++.+..+.|+..++..+...+..++.|+++||.-+
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~--VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~ 323 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKE--VLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTF 323 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH--HhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777888888888899999999999983 799999999999999999999999999999999855
No 234
>KOG3762|consensus
Probab=97.69 E-value=2.7e-05 Score=57.37 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=56.9
Q ss_pred HHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHH
Q psy6141 14 GSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIV 86 (144)
Q Consensus 14 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~ 86 (144)
..+..+.......|.++.+.+ .+|+++.+.+.+.....+..+++.|++|+++||+-+||.++++..+...
T Consensus 19 f~~~~~~~~g~l~pll~vy~k---QLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v 88 (618)
T KOG3762|consen 19 FYLFFGARFGSLFPLLAVYFK---QLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSV 88 (618)
T ss_pred eeeeeeecccccchHHHHHHH---HcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 334445555667777788877 8999999999999999999999999999999999888877766555444
No 235
>KOG0252|consensus
Probab=97.66 E-value=8.3e-06 Score=58.99 Aligned_cols=134 Identities=13% Similarity=-0.060 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchh--------H-HHHHHHHHHHHHHHHhhHHHHhhhcchhh
Q psy6141 6 LASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEA--------S-WIGSLMPLSALFGGMAGGPLIESLGRRTT 76 (144)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~i~~~~~g~l~d~~g~r~~ 76 (144)
......+...|......+........+.+ +.+..+.+. . .-..+..++++.+.++...+.|++|||+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~---~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~i 380 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS---AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYI 380 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHH---hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHH
Confidence 34455555556655555555555555554 333322211 1 12333455566688888999999999999
Q ss_pred HhhhchHHHHHHHHHHHhchH----HHHH-HHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 77 ILSTGLPFIVSFLLIALANGV----PMIL-AGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
.+.+.++..+..+..+...|. ..+. ...+.+=++.-+.......+.+|.||++.|++..|+....+
T Consensus 381 q~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~G 451 (538)
T KOG0252|consen 381 QLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASG 451 (538)
T ss_pred HHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhc
Confidence 999999999988887765441 1122 22222333333444556678899999999999988876543
No 236
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=97.60 E-value=0.0013 Score=47.93 Aligned_cols=114 Identities=16% Similarity=0.093 Sum_probs=82.7
Q ss_pred ccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH---hc------
Q psy6141 25 TSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL---AN------ 95 (144)
Q Consensus 25 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~---~~------ 95 (144)
+...+..|.+ ..|+++.+.+..-+...+..+.+.+..+++.+|+|..|.=+++.........++.. .+
T Consensus 277 f~~lmt~yl~---~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~ 353 (432)
T PF06963_consen 277 FGGLMTAYLK---SQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSS 353 (432)
T ss_pred CcHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchh
Confidence 3444555666 66999999999999999999999999999999999988877777666655544432 21
Q ss_pred -hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 96 -GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 96 -~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
+...++.+-.+.-+|.=+.+-...-+++|..|+++|+...|.....
T Consensus 354 ~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl 400 (432)
T PF06963_consen 354 ISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSL 400 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHH
Confidence 1222333333333454455667778999999999999999887654
No 237
>KOG2816|consensus
Probab=97.55 E-value=0.00065 Score=49.92 Aligned_cols=84 Identities=17% Similarity=0.108 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhh--hhhhhhHHHHHhhccCcc
Q psy6141 52 LMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCV--GIASLALPVYLGETVQPE 129 (144)
Q Consensus 52 ~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--g~~~~~~~~~~~~~~~~~ 129 (144)
...+..++..+..|.++||+|||..+........+..+...+.. +++.+ +.++.. +...+...++++|...++
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchh
Confidence 44788899999999999999999999998888888777776655 33333 444332 344567788999999999
Q ss_pred hhhhhchhhhh
Q psy6141 130 VRGTLGLLPTF 140 (144)
Q Consensus 130 ~r~~~~~~~~~ 140 (144)
+|....++.+.
T Consensus 145 ~R~~~~gll~~ 155 (463)
T KOG2816|consen 145 ERSSSIGLLSG 155 (463)
T ss_pred HHHHHHHHHHH
Confidence 99988887665
No 238
>KOG2816|consensus
Probab=97.54 E-value=0.0019 Score=47.53 Aligned_cols=110 Identities=21% Similarity=0.184 Sum_probs=90.2
Q ss_pred ccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhH-HHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHh
Q psy6141 29 IPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGG-PLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVA 107 (144)
Q Consensus 29 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (144)
.+.+.+. .++.++.+.+...+.......+++.+.. .+...+|-|+....+...-.+.....+++.+.|+......+.
T Consensus 264 ~~~yl~~--~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~ 341 (463)
T KOG2816|consen 264 LLLYLKA--KFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVV 341 (463)
T ss_pred EEEEEee--ecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHH
Confidence 3445442 7889999999888888888888888876 788889999988889999999999999999999988877776
Q ss_pred hhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 108 GFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 108 g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
++. +...+...+..+...+++++|+..++.+..
T Consensus 342 ~~~-~~~~pa~~s~~s~~v~~~e~g~v~~~is~i 374 (463)
T KOG2816|consen 342 ALA-GIVFPAIRAFASILVSPEEQGKVFGIISGI 374 (463)
T ss_pred Hhh-cchhHHHHhHHHhhcccccccchhhHHHHH
Confidence 666 455778888999999999999988876543
No 239
>KOG3764|consensus
Probab=97.44 E-value=0.00019 Score=51.36 Aligned_cols=114 Identities=19% Similarity=0.118 Sum_probs=83.1
Q ss_pred hhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhH--hhhchHHHHHHHHHHHh
Q psy6141 17 IVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTI--LSTGLPFIVSFLLIALA 94 (144)
Q Consensus 17 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~--~~~~~~~~~~~~~~~~~ 94 (144)
..+......-|.++.+.. +....+.-+.+.......+.+.++..+.|.+.||+++.+.+ ..+.+.....+....++
T Consensus 281 ~~n~~lafLePtlslwm~--e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~ 358 (464)
T KOG3764|consen 281 FSNSSLAFLEPTLSLWML--ETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFA 358 (464)
T ss_pred hccchHHHhCcccHHHHH--HhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhh
Confidence 344455566666677555 25554445899999999999999999999999999954443 34444445555566778
Q ss_pred chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhh
Q psy6141 95 NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRG 132 (144)
Q Consensus 95 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~ 132 (144)
+++..+.+-+...+++.+...+...-...+..+.++-.
T Consensus 359 ~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s 396 (464)
T KOG3764|consen 359 TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVS 396 (464)
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhcc
Confidence 99999999898899888888877766777777655443
No 240
>KOG0255|consensus
Probab=97.28 E-value=0.0059 Score=45.45 Aligned_cols=88 Identities=19% Similarity=0.146 Sum_probs=66.4
Q ss_pred HHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHH---HHHHHHHHhhhhhhhhhhhHHHHHhhccCcch
Q psy6141 54 PLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVP---MILAGRCVAGFCVGIASLALPVYLGETVQPEV 130 (144)
Q Consensus 54 ~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~ 130 (144)
......+....+...|+.|||.....+.....++.+...+..+.. ...+...+..++.+........+.+|.+|+..
T Consensus 360 ~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~ 439 (521)
T KOG0255|consen 360 GLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVV 439 (521)
T ss_pred HHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 335666677778999999999999999999999988888754322 24444455555556666667889999999999
Q ss_pred hhhhchhhhhh
Q psy6141 131 RGTLGLLPTFL 141 (144)
Q Consensus 131 r~~~~~~~~~~ 141 (144)
|..+.+..+..
T Consensus 440 r~~~~~~~~~~ 450 (521)
T KOG0255|consen 440 RNTAVGAISAA 450 (521)
T ss_pred HHHHHHHHHHH
Confidence 99988776654
No 241
>KOG4332|consensus
Probab=97.19 E-value=0.0002 Score=49.09 Aligned_cols=88 Identities=15% Similarity=0.199 Sum_probs=67.0
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhh
Q psy6141 38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLA 117 (144)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 117 (144)
.++....+++..........++...+.|.++||-|||+....-++....+++ .-.++.+-.++++|.+-|+.....++.
T Consensus 66 tYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLFSa 144 (454)
T KOG4332|consen 66 TYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLFSA 144 (454)
T ss_pred hcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHHHH
Confidence 6777788888877777777888888999999999999987766655554433 234677888999999999998887776
Q ss_pred HHH-HHhhcc
Q psy6141 118 LPV-YLGETV 126 (144)
Q Consensus 118 ~~~-~~~~~~ 126 (144)
-.. ++.|.-
T Consensus 145 FEsWliaEHn 154 (454)
T KOG4332|consen 145 FESWLIAEHN 154 (454)
T ss_pred HHHHHHHHhh
Confidence 655 445554
No 242
>PTZ00207 hypothetical protein; Provisional
Probab=97.18 E-value=0.0033 Score=47.70 Aligned_cols=87 Identities=10% Similarity=0.094 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhcchh--------h-HhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHH
Q psy6141 49 IGSLMPLSALFGGMAGGPLIESLGRRT--------T-ILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALP 119 (144)
Q Consensus 49 ~~~~~~~~~~i~~~~~g~l~d~~g~r~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 119 (144)
..+..++++.+|.+..|.+....-+|+ . +.+..+ ..++.+++.+......+.+..++.|++.|...++..
T Consensus 396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~ 474 (591)
T PTZ00207 396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIA 474 (591)
T ss_pred ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHH
Confidence 688899999999999998883322222 1 222223 444555555543335788999999999999999999
Q ss_pred HHHhhccCcchhhhhchh
Q psy6141 120 VYLGETVQPEVRGTLGLL 137 (144)
Q Consensus 120 ~~~~~~~~~~~r~~~~~~ 137 (144)
...+|+|. |+-|+-..+
T Consensus 475 ~i~selFg-k~~g~~yN~ 491 (591)
T PTZ00207 475 LVTRTIFA-KDPAKHYNF 491 (591)
T ss_pred HHHHHHhc-cchHHHhhH
Confidence 99999999 777764443
No 243
>KOG3098|consensus
Probab=97.08 E-value=0.0019 Score=47.31 Aligned_cols=91 Identities=9% Similarity=0.006 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcc
Q psy6141 50 GSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPE 129 (144)
Q Consensus 50 ~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~ 129 (144)
+.+......++.++.+.+.|+.|+|+.+.++............+. |-+.+++...+.|+|.+..+.-...+++|..++|
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 677777888999999999999999999999988888876665554 5677788899999999998888889999999999
Q ss_pred hhhhhchhhhhh
Q psy6141 130 VRGTLGLLPTFL 141 (144)
Q Consensus 130 ~r~~~~~~~~~~ 141 (144)
.+.+-.++....
T Consensus 135 tie~Nisi~Wai 146 (461)
T KOG3098|consen 135 TIERNISIFWAI 146 (461)
T ss_pred hHHHHHHHHHHH
Confidence 888877765443
No 244
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=97.02 E-value=0.032 Score=40.52 Aligned_cols=111 Identities=18% Similarity=0.162 Sum_probs=85.1
Q ss_pred ccccccccccCCCCCCCCcchhH-HHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHH
Q psy6141 25 TSPAIPSMNQMGSRVSPTEEEAS-WIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAG 103 (144)
Q Consensus 25 ~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (144)
.-|++..++.. .+.|++.+|.. -+.-...-.++...++...++|..+.|+++++..+...+...+..+.++...+-+.
T Consensus 22 sEPfl~~yL~~-~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~ 100 (412)
T PF01770_consen 22 SEPFLTPYLTG-PDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLM 100 (412)
T ss_pred CCccchHHHcC-CccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHH
Confidence 33444444431 23788887764 45666666778888999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhhHHHHHhhccCcchhhhhchh
Q psy6141 104 RCVAGFCVGIASLALPVYLGETVQPEVRGTLGLL 137 (144)
Q Consensus 104 ~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~ 137 (144)
-++.|+..+. ..+..+|+-...|+++-.++.+.
T Consensus 101 q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~ 133 (412)
T PF01770_consen 101 QFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSY 133 (412)
T ss_pred HHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHH
Confidence 9999999766 45667777777777765555544
No 245
>KOG2615|consensus
Probab=96.92 E-value=0.0057 Score=43.91 Aligned_cols=105 Identities=21% Similarity=0.216 Sum_probs=82.8
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhc--chhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhh
Q psy6141 38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLG--RRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIAS 115 (144)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 115 (144)
.++.++.+.|-+.+...+...+.+....+..||.. .+-.+..+.....-..+....++....+.++..+..+......
T Consensus 291 rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~v 370 (451)
T KOG2615|consen 291 RFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVV 370 (451)
T ss_pred ccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhh
Confidence 78999999999999999988888888888888876 4555555555555555556667777888888888888877777
Q ss_pred hhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 116 LALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 116 ~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
+.....+....|.++||..+|+.....
T Consensus 371 t~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~ 397 (451)
T KOG2615|consen 371 TCLTSLVHKYGPQSQRGTLNGIFRSLG 397 (451)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHH
Confidence 777788889999999999998876543
No 246
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=96.83 E-value=0.0017 Score=49.69 Aligned_cols=77 Identities=17% Similarity=0.175 Sum_probs=55.8
Q ss_pred HHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHH-HHHHHHHhhHHHHhhhcc--hhhHhhhchHHHH
Q psy6141 10 TVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPL-SALFGGMAGGPLIESLGR--RTTILSTGLPFIV 86 (144)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~g~--r~~~~~~~~~~~~ 86 (144)
...+..+........+..++|.+.++ .++.++.+.+++.....+ +.+++.+++|++.||+++ |+.+..+.+...+
T Consensus 334 ~~~l~~~~~~~~~~~~~~~lP~yl~~--~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~ 411 (633)
T TIGR00805 334 LVILAQVIDSLAFNGYITFLPKYLEN--QYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTL 411 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHH
Confidence 34444455555556666788999873 789999999998887766 678999999999999984 5555555555555
Q ss_pred HH
Q psy6141 87 SF 88 (144)
Q Consensus 87 ~~ 88 (144)
+.
T Consensus 412 ~~ 413 (633)
T TIGR00805 412 SY 413 (633)
T ss_pred HH
Confidence 43
No 247
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=96.61 E-value=0.076 Score=39.44 Aligned_cols=138 Identities=10% Similarity=0.011 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHH-HHhhHHHHhhhcchhhHhhhch
Q psy6141 4 AVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFG-GMAGGPLIESLGRRTTILSTGL 82 (144)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~g~l~d~~g~r~~~~~~~~ 82 (144)
.+...+...+..++..+.+...-+.-..+.. +..+.+.++..++-+...+...+. .++.+++++|++|++.+-....
T Consensus 5 E~~k~~~~~l~fF~il~~Y~iLR~lKD~lvv--~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~ 82 (472)
T TIGR00769 5 ELKKFLPLFLMFFCILFNYTILRDTKDTLVV--TAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVIS 82 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhheee--cccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHH
Confidence 3444455555556655555544333222211 011334567888887776666655 8899999999999998877666
Q ss_pred HHHHHHHHHHHh----ch---------------------------HHHHHHHHHHhhhhhhhhhh-hHHHHHhhccCcch
Q psy6141 83 PFIVSFLLIALA----NG---------------------------VPMILAGRCVAGFCVGIASL-ALPVYLGETVQPEV 130 (144)
Q Consensus 83 ~~~~~~~~~~~~----~~---------------------------~~~~~~~~~~~g~~~g~~~~-~~~~~~~~~~~~~~ 130 (144)
.+.....++++. ++ .|...+..+...+-.....+ .-+..++|.++++|
T Consensus 83 ~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~q 162 (472)
T TIGR00769 83 PFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDE 162 (472)
T ss_pred HHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 666655554432 11 11111222223333333344 67889999999988
Q ss_pred hhhhchhhhhhcc
Q psy6141 131 RGTLGLLPTFLGN 143 (144)
Q Consensus 131 r~~~~~~~~~~~~ 143 (144)
-.|..++.....+
T Consensus 163 akRfy~l~~~gan 175 (472)
T TIGR00769 163 AKRFYALFGLGAN 175 (472)
T ss_pred HHHHHHHHHHHHH
Confidence 7777776655443
No 248
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=96.55 E-value=0.056 Score=40.09 Aligned_cols=97 Identities=16% Similarity=0.143 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHhhhcchh-------hHhhhchHHHHHHHHHHHh----------chHHHHHHHHHHh
Q psy6141 45 EASWIGSLMPLSALFGGMAGGPLIESLGRRT-------TILSTGLPFIVSFLLIALA----------NGVPMILAGRCVA 107 (144)
Q Consensus 45 ~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~-------~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 107 (144)
...+.++...+..++..|+..++-.+.++|+ -+-++..+...+.++.... .+.++++...+++
T Consensus 325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~ 404 (498)
T COG3104 325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQ 404 (498)
T ss_pred CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence 3467788888888999999888888855441 1234445555554444332 2578888899999
Q ss_pred hhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 108 GFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 108 g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
+++.=+..|....+++...|++-.+..++++...
T Consensus 405 s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt 438 (498)
T COG3104 405 SFGELFISPVGLSMVTKLAPPALKSFIMAMWFLT 438 (498)
T ss_pred HHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888876543
No 249
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=96.53 E-value=0.015 Score=42.56 Aligned_cols=105 Identities=23% Similarity=0.200 Sum_probs=71.0
Q ss_pred ccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhc----chhhH-hhhchHHHHHHHHHHHh----chHHH
Q psy6141 29 IPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLG----RRTTI-LSTGLPFIVSFLLIALA----NGVPM 99 (144)
Q Consensus 29 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g----~r~~~-~~~~~~~~~~~~~~~~~----~~~~~ 99 (144)
.|.+.+ +++.++.+.....+...+.. ...++.|.++|.+- |||.+ +++.++..++....+.. .+...
T Consensus 13 ~~~l~~---~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~ 88 (433)
T PF03092_consen 13 YPFLKD---DLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI 88 (433)
T ss_pred HHHHHH---HcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence 344444 89999998887777666654 46889999999973 55554 45666655555544442 34555
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHhhccCcch--hhhhchh
Q psy6141 100 ILAGRCVAGFCVGIASLALPVYLGETVQPEV--RGTLGLL 137 (144)
Q Consensus 100 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~--r~~~~~~ 137 (144)
..+..++..++....+....+...|....+. |+...+.
T Consensus 89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~ 128 (433)
T PF03092_consen 89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSF 128 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHH
Confidence 6666677888888999999999999875432 4444433
No 250
>KOG3098|consensus
Probab=96.15 E-value=0.13 Score=38.06 Aligned_cols=127 Identities=17% Similarity=0.179 Sum_probs=79.8
Q ss_pred HHHHHHhhhhhhhhcccccccccccCCCCCCCCc-chhHHHHHHHHHHHHHHHHhhHHHHhh---hcchhhHhhhchHHH
Q psy6141 10 TVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTE-EEASWIGSLMPLSALFGGMAGGPLIES---LGRRTTILSTGLPFI 85 (144)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~---~g~r~~~~~~~~~~~ 85 (144)
.+....+..|..........|.-....+..+.+. ...+.......++..++....+.+.+| +||++.+..+.++..
T Consensus 244 ~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~ 323 (461)
T KOG3098|consen 244 LLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHL 323 (461)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHH
Confidence 3344444455555555555555443211222222 334455555667777777777777766 688888888887777
Q ss_pred HHHHHHHHh------------------chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchh
Q psy6141 86 VSFLLIALA------------------NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLL 137 (144)
Q Consensus 86 ~~~~~~~~~------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~ 137 (144)
+..++.... ++.....+..++.|++-.......+.++.+.. +++|..+.++
T Consensus 324 ~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi 392 (461)
T KOG3098|consen 324 IGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSL 392 (461)
T ss_pred HHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHH
Confidence 776665431 13456667778999999999999999999998 4445544433
No 251
>KOG1330|consensus
Probab=95.97 E-value=0.02 Score=42.04 Aligned_cols=101 Identities=14% Similarity=0.028 Sum_probs=59.1
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcc-------hhhHhhhchHHHHHHHH----HH-HhchHHHHHHHHHHh
Q psy6141 40 SPTEEEASWIGSLMPLSALFGGMAGGPLIESLGR-------RTTILSTGLPFIVSFLL----IA-LANGVPMILAGRCVA 107 (144)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~-------r~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~ 107 (144)
+.+..+..+...+...+..+|..++|.++||+.| .+.--+...+.+...+. .. .+.+...+.+..++.
T Consensus 279 ~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~ 358 (493)
T KOG1330|consen 279 GFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLV 358 (493)
T ss_pred CCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3455556667778888889999999999999533 12111111111111111 11 223333344445556
Q ss_pred hhhhhhh-hhhHHHHHhhccCcchhhhhchhhhh
Q psy6141 108 GFCVGIA-SLALPVYLGETVQPEVRGTLGLLPTF 140 (144)
Q Consensus 108 g~~~g~~-~~~~~~~~~~~~~~~~r~~~~~~~~~ 140 (144)
|...... .+...-...|..|+++|..+.++...
T Consensus 359 g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~ 392 (493)
T KOG1330|consen 359 GETISWFNWATNNPIFLEVVPPSRRTTAYALDTV 392 (493)
T ss_pred HHHHHhcccccccceeeEecCcccccHHHHHHHH
Confidence 6554433 34455577999999999998887654
No 252
>KOG3626|consensus
Probab=95.90 E-value=0.0059 Score=47.14 Aligned_cols=132 Identities=14% Similarity=0.073 Sum_probs=106.7
Q ss_pred HHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHH
Q psy6141 8 SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVS 87 (144)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 87 (144)
+...++..+..++....+...+..+.+ .++++.++.|++.+.+-++..+...+..+...|.-|-|.+-.+.++.+++
T Consensus 99 l~~l~~~~~~q~l~~~y~~s~IttiEr---RF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lg 175 (735)
T KOG3626|consen 99 LVLLSLAAFAQGLYVGYFNSVITTIER---RFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLG 175 (735)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhh---hcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHH
Confidence 345556666666666666666666666 78999999999999999999999999999999999988888999999988
Q ss_pred HHHHHHh--------------------c---------------------------h----HH-HHHHHHHHhhhhhhhhh
Q psy6141 88 FLLIALA--------------------N---------------------------G----VP-MILAGRCVAGFCVGIAS 115 (144)
Q Consensus 88 ~~~~~~~--------------------~---------------------------~----~~-~~~~~~~~~g~~~g~~~ 115 (144)
.++.++. + + ++ .++++.++.|+|....+
T Consensus 176 sll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~ 255 (735)
T KOG3626|consen 176 SLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIF 255 (735)
T ss_pred HHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCc
Confidence 8877641 0 0 12 45667899999999999
Q ss_pred hhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 116 LALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 116 ~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
++...|+-|...+++-+...|+.+...
T Consensus 256 tlGisYiDDnvk~~~SplYlgi~~~~~ 282 (735)
T KOG3626|consen 256 TLGISYIDDNVKKKNSPLYLGILYSMA 282 (735)
T ss_pred cCCCccccccccccCCcHHHHHHHHHH
Confidence 999999999999998888888877653
No 253
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=95.81 E-value=0.015 Score=40.65 Aligned_cols=52 Identities=15% Similarity=0.024 Sum_probs=46.2
Q ss_pred HHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhcc
Q psy6141 92 ALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGN 143 (144)
Q Consensus 92 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 143 (144)
...++++.+++..++.|.|.+..++..+.++++..|+|++++.+++.+.+..
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~ 56 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNK 56 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhh
Confidence 3457899999999999999999999999999999999999998888877654
No 254
>KOG3574|consensus
Probab=95.79 E-value=0.12 Score=37.53 Aligned_cols=127 Identities=12% Similarity=0.125 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHh-----hhcchhhHh
Q psy6141 4 AVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIE-----SLGRRTTIL 78 (144)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d-----~~g~r~~~~ 78 (144)
....+..+.+.+...+....... .+|.+++ .-+.|.++.+....++.- .--.+.|.++.| |+||||.-+
T Consensus 29 d~~~illLl~LYllQGiP~GL~~-~iP~lL~---ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksWv 102 (510)
T KOG3574|consen 29 DRSSILLLLFLYLLQGIPLGLIG-AIPLLLQ---AKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSWV 102 (510)
T ss_pred hhhhHHHHHHHHHHcCCchhHhh-hhHHHhc---CCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhcccccee
Confidence 34455666777788888777777 8899887 667777666554333222 234677888888 999999865
Q ss_pred hhchHHHHHHHH--HHH-----------hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchh
Q psy6141 79 STGLPFIVSFLL--IAL-----------ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLL 137 (144)
Q Consensus 79 ~~~~~~~~~~~~--~~~-----------~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~ 137 (144)
+- .-..++.+. ... .++........++.-+..+.-..+...+.-....+++-|.+...
T Consensus 103 vp-~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~ 173 (510)
T KOG3574|consen 103 VP-CQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTC 173 (510)
T ss_pred ee-hHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHH
Confidence 42 222222222 222 12233333344556666666677777777777777777655543
No 255
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=95.18 E-value=0.28 Score=35.72 Aligned_cols=96 Identities=15% Similarity=0.089 Sum_probs=63.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHH-----HHHhchHHHHHHHHHHhhhhhhhhhh
Q psy6141 42 TEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLL-----IALANGVPMILAGRCVAGFCVGIASL 116 (144)
Q Consensus 42 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~g~~~~ 116 (144)
..++..+....+.+|-+++.--... +.-|+..+.+.+-.+-..+. .-+.++.|..++.-+..|+..|..+.
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~----~rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV 354 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPF----FRIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV 354 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceee----eehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 3456777777777776666543322 22344444433222222111 12356788888888899999999999
Q ss_pred hHHHHHhhccCcchhhhhchhhhhh
Q psy6141 117 ALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 117 ~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
.....+.|-.|+++|..+++.....
T Consensus 355 NtF~~I~~~~~~~~REFslg~vsvs 379 (402)
T PF02487_consen 355 NTFYRISEEVPPEDREFSLGAVSVS 379 (402)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 8888899999999999888876654
No 256
>KOG2563|consensus
Probab=95.00 E-value=0.024 Score=41.50 Aligned_cols=94 Identities=19% Similarity=0.133 Sum_probs=63.3
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcc-hhhHhhhchHHHHHHH-HHHHh---chHHHHHHHHHHhhhhhh
Q psy6141 38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGR-RTTILSTGLPFIVSFL-LIALA---NGVPMILAGRCVAGFCVG 112 (144)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~-r~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~g~~~g 112 (144)
..+.+....|.+.....++.++++...|.+.||... |++.+.......++.. +.... .+.+.+...-.+.|.+..
T Consensus 295 ~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~ 374 (480)
T KOG2563|consen 295 PSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGT 374 (480)
T ss_pred cccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhc
Confidence 445566788999999999999999999999999864 5555555555555532 22222 223344455566777777
Q ss_pred hhhhhHHHHHhhc-cCcchh
Q psy6141 113 IASLALPVYLGET-VQPEVR 131 (144)
Q Consensus 113 ~~~~~~~~~~~~~-~~~~~r 131 (144)
...|+..-...|. +|..++
T Consensus 375 ~~~Pig~ElgvE~TyPv~E~ 394 (480)
T KOG2563|consen 375 GYLPIGFELGVETTYPVAEG 394 (480)
T ss_pred CCCCcceeeeeeeccccCCc
Confidence 7778777777775 454443
No 257
>KOG1237|consensus
Probab=93.98 E-value=0.52 Score=36.06 Aligned_cols=90 Identities=13% Similarity=0.126 Sum_probs=67.1
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhh-cchhhHhhhchHHHHHHHHHHHhch--------------------
Q psy6141 38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESL-GRRTTILSTGLPFIVSFLLIALANG-------------------- 96 (144)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~~-------------------- 96 (144)
+++.+...+.-....+.-........++.++|.+ ||-+++.++.++...+......+..
T Consensus 67 ~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~ 146 (571)
T KOG1237|consen 67 ELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCES 146 (571)
T ss_pred HhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccC
Confidence 6777776666677777777778889999999995 8888888888888887655543211
Q ss_pred -----HHHHHHHHHHhhhhhhhhhhhHHHHHhhccC
Q psy6141 97 -----VPMILAGRCVAGFCVGIASLALPVYLGETVQ 127 (144)
Q Consensus 97 -----~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ 127 (144)
...+..+.-+..+|.|+.-+.....-+|-++
T Consensus 147 ~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd 182 (571)
T KOG1237|consen 147 PSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFD 182 (571)
T ss_pred cchHHHHHHHHHHHHheeccCCCCCcchhhcccccC
Confidence 1235556666777888888888888899888
No 258
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=93.77 E-value=2 Score=31.58 Aligned_cols=97 Identities=10% Similarity=0.037 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHh--hhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHH
Q psy6141 45 EASWIGSLMPLSALFGGMAGGPLIESLGRRTTIL--STGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYL 122 (144)
Q Consensus 45 ~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 122 (144)
.-|.+-....+...++.+..|++..++++-.-+. ....+.+...+++...++.|...++.++.+...-...++...-+
T Consensus 286 YNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qI 365 (412)
T PF01770_consen 286 YNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQI 365 (412)
T ss_pred cchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477777788888889999999877776644333 33344444556667788999988888887777766667777777
Q ss_pred hhccCcchhhhhchhhhhh
Q psy6141 123 GETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 123 ~~~~~~~~r~~~~~~~~~~ 141 (144)
+....++.-+...|++.+.
T Consensus 366 A~~l~~e~yaLVFGiNtf~ 384 (412)
T PF01770_consen 366 AKNLSEERYALVFGINTFV 384 (412)
T ss_pred HHhccccceeeeeeeHHHH
Confidence 7777777777777776654
No 259
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=93.19 E-value=1.7 Score=32.14 Aligned_cols=96 Identities=18% Similarity=0.125 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHhhhcch-hhHhhhchH---HHHHHHHHHHh---------chHHHHHHHHHHhhhhh
Q psy6141 45 EASWIGSLMPLSALFGGMAGGPLIESLGRR-TTILSTGLP---FIVSFLLIALA---------NGVPMILAGRCVAGFCV 111 (144)
Q Consensus 45 ~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r-~~~~~~~~~---~~~~~~~~~~~---------~~~~~~~~~~~~~g~~~ 111 (144)
..-.....++++..+|..+..+.. .-++| +.+.+..+. ++...+++... ++-+..++..++.|+.+
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn 386 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN 386 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence 345667778888888888554321 11222 122222222 22222223221 24445566688999999
Q ss_pred hhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 112 GIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 112 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
|-..+....+..+..++++|..+..+...+
T Consensus 387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~ 416 (437)
T TIGR00939 387 GYLGSLSMCLAPRQVDPHEREVAGALMVIF 416 (437)
T ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998777665543
No 260
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=92.08 E-value=2.3 Score=32.05 Aligned_cols=96 Identities=7% Similarity=-0.008 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHhhhcc--hhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHh
Q psy6141 46 ASWIGSLMPLSALFGGMAGGPLIESLGR--RTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLG 123 (144)
Q Consensus 46 ~~~~~~~~~~~~~i~~~~~g~l~d~~g~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ 123 (144)
-|.+-.+..+...+..+..|++-.++.+ ...+.+...+.+...+++..++|+|..+++.++.+.......++...-++
T Consensus 300 NG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA 379 (511)
T TIGR00806 300 NGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIA 379 (511)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666777778888888988776643 12223333344444556677899999999999888888888888888778
Q ss_pred hccCcchhhhhchhhhhh
Q psy6141 124 ETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 124 ~~~~~~~r~~~~~~~~~~ 141 (144)
+....+.-|...|++.+.
T Consensus 380 ~~L~~~~~aLvFGiNtfv 397 (511)
T TIGR00806 380 SSLSKELCALVFGINTFV 397 (511)
T ss_pred HHhcccceEEEEecHHHH
Confidence 877777778887776654
No 261
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=90.68 E-value=0.074 Score=40.20 Aligned_cols=73 Identities=14% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHH-HHHHHHHhhHHHHhhhc--chhhHhhhchH
Q psy6141 9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPL-SALFGGMAGGPLIESLG--RRTTILSTGLP 83 (144)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~g--~r~~~~~~~~~ 83 (144)
....++..........+.++.|+|.|. +++.++.++..+.....+ +..+|.+++|.+..|+. .|+......+.
T Consensus 308 ~~~~la~~~~~~~~~G~~tF~pKylE~--QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~ 383 (539)
T PF03137_consen 308 MCLILAGVFESFIVSGFATFLPKYLES--QFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVV 383 (539)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHH
Confidence 344556666777778888999999995 899999888887766555 67789999999999975 34444433333
No 262
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=90.31 E-value=1.4 Score=25.87 Aligned_cols=38 Identities=26% Similarity=0.397 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch
Q psy6141 45 EASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL 82 (144)
Q Consensus 45 ~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~ 82 (144)
..+.......++..++....+.+.|..|.+..+.....
T Consensus 88 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (141)
T TIGR00880 88 ALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAI 125 (141)
T ss_pred HHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHH
Confidence 34555666677777777777777777776555444333
No 263
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=89.74 E-value=0.57 Score=33.54 Aligned_cols=67 Identities=12% Similarity=0.179 Sum_probs=47.7
Q ss_pred hhHhhhchHHHHHHHHHHHhc---------hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcch---hhhhchhhhhh
Q psy6141 75 TTILSTGLPFIVSFLLIALAN---------GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEV---RGTLGLLPTFL 141 (144)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~ 141 (144)
|+++++.+...++.++...+. +.+.+.++..+.++|.|+.=+.......|.+++++ |.+...+++..
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~ 80 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWG 80 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence 567778888888888854431 23578888899999999999999999999999773 33344444433
No 264
>KOG3626|consensus
Probab=89.72 E-value=0.5 Score=37.06 Aligned_cols=62 Identities=19% Similarity=0.215 Sum_probs=49.2
Q ss_pred HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHH-HHHHHHHHhhHHHHhhhc
Q psy6141 9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMP-LSALFGGMAGGPLIESLG 72 (144)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~g~l~d~~g 72 (144)
....++..........+.+++|+|+|+ +++.+...+..+..... .+..+|..++|++..|+.
T Consensus 395 ~~~~l~~~~~~~~~~G~~tFlPKyLE~--Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfk 457 (735)
T KOG3626|consen 395 MLVVLASVIESLAITGYITFLPKYLET--QFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFK 457 (735)
T ss_pred HHHHHHHHHHHHHHhhHHHhhHHHHHH--HcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeec
Confidence 455666777778888899999999995 89999998888775544 455688888999999874
No 265
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=89.45 E-value=1.2 Score=32.89 Aligned_cols=103 Identities=15% Similarity=0.050 Sum_probs=71.5
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH----------hchHHHHHHHHHHhhhh
Q psy6141 41 PTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL----------ANGVPMILAGRCVAGFC 110 (144)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~ 110 (144)
.++...+....+..++.+++.....+...+..-|+.+....+..++..+.... .++.+..+.--.+..+.
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~ 331 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI 331 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence 78888888888888888999999888888888888887777666554443211 11222223334555555
Q ss_pred hhhhhhhHHHHHhhccCcchhhhhchhhhhhcc
Q psy6141 111 VGIASLALPVYLGETVQPEVRGTLGLLPTFLGN 143 (144)
Q Consensus 111 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 143 (144)
.+...-+.....+|+-|+...|+..++...+.|
T Consensus 332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~N 364 (433)
T PF03092_consen 332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSN 364 (433)
T ss_pred HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 566666677788999999999988877665544
No 266
>KOG4332|consensus
Probab=89.12 E-value=6.2 Score=27.86 Aligned_cols=119 Identities=17% Similarity=0.178 Sum_probs=70.9
Q ss_pred HhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchh--hHhhhchHHHHHHHHHH
Q psy6141 15 SMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRT--TILSTGLPFIVSFLLIA 92 (144)
Q Consensus 15 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~--~~~~~~~~~~~~~~~~~ 92 (144)
....+..+..+..+.|...-+ +-+ .--|++.+.+....++|+-+..++..|-.+|. .+.+.....++...+..
T Consensus 258 sLFE~smytFVFLWTPaLspn--~e~---iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpi 332 (454)
T KOG4332|consen 258 SLFEGSMYTFVFLWTPALSPN--DEE---IPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPI 332 (454)
T ss_pred HHHhhhhheeeeeecccCCCC--ccc---CCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHH
Confidence 344444444455555654321 111 22478888888888888888888877765443 12222222222222111
Q ss_pred --H--hc---hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhh
Q psy6141 93 --L--AN---GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLP 138 (144)
Q Consensus 93 --~--~~---~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~ 138 (144)
. ++ ++..-+++..+.-.+.|..+|.....=++..|++.|...+.+.
T Consensus 333 lt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfF 385 (454)
T KOG4332|consen 333 LTSSVSPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFF 385 (454)
T ss_pred HHhccCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhhe
Confidence 1 11 2333455666677888899998888889999999999877653
No 267
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=89.02 E-value=4.4 Score=29.78 Aligned_cols=82 Identities=16% Similarity=0.096 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhcc
Q psy6141 47 SWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETV 126 (144)
Q Consensus 47 ~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~ 126 (144)
+.+..+-.+-.++..+...++.+|+..+.-......+..++.+..+++++.+.-+++-.+.+++.|........+ +..+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhc
Confidence 445556666777888889999999987777777788888898888898999888888888888888776655554 4455
Q ss_pred Ccc
Q psy6141 127 QPE 129 (144)
Q Consensus 127 ~~~ 129 (144)
++.
T Consensus 141 ~~~ 143 (402)
T PF02487_consen 141 GKS 143 (402)
T ss_pred Ccc
Confidence 543
No 268
>KOG0637|consensus
Probab=87.44 E-value=3.6 Score=30.78 Aligned_cols=77 Identities=16% Similarity=-0.007 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHh
Q psy6141 47 SWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLG 123 (144)
Q Consensus 47 ~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ 123 (144)
.+-..+..+...+.+....++.||+|-|+.++.+...+.++.......++.+....-+...|+-.+.........++
T Consensus 335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~ 411 (498)
T KOG0637|consen 335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALA 411 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHH
Confidence 44456677777888899999999999888877777767777666677777777777777777555544444443333
No 269
>KOG3810|consensus
Probab=84.64 E-value=3.6 Score=29.89 Aligned_cols=95 Identities=14% Similarity=0.121 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhh--hchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhh
Q psy6141 47 SWIGSLMPLSALFGGMAGGPLIESLGRRTTILS--TGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGE 124 (144)
Q Consensus 47 ~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~ 124 (144)
|.+-....+...++.+..|.+--++.|..-+++ +....+-..+++..++++|...++.++...-.....++...-+++
T Consensus 274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~ 353 (433)
T KOG3810|consen 274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIAR 353 (433)
T ss_pred CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHH
Confidence 555666777888899999999888877644443 333333344555667889988888877777766666777777777
Q ss_pred ccCcchhhhhchhhhhh
Q psy6141 125 TVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 125 ~~~~~~r~~~~~~~~~~ 141 (144)
-..++.-|...|++.+.
T Consensus 354 nL~~e~~gLvFGiNTFv 370 (433)
T KOG3810|consen 354 NLSSELFGLVFGINTFV 370 (433)
T ss_pred hhhhhhheeeeehHHHH
Confidence 77777778888776654
No 270
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=84.61 E-value=0.38 Score=33.68 Aligned_cols=94 Identities=22% Similarity=0.203 Sum_probs=3.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHhhh-cchhhHhh--hchHHHHHHHHHHHh----------chHHHHHHHHHHhhhhhhhh
Q psy6141 48 WIGSLMPLSALFGGMAGGPLIESL-GRRTTILS--TGLPFIVSFLLIALA----------NGVPMILAGRCVAGFCVGIA 114 (144)
Q Consensus 48 ~~~~~~~~~~~i~~~~~g~l~d~~-g~r~~~~~--~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~g~~~g~~ 114 (144)
.....++++..+|....++..-+. .+|+.... .-++++...+.+... ++-+..++..++.|+.+|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 346678999999998877643221 23443332 122222222222111 23345566678899999999
Q ss_pred hhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 115 SLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 115 ~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
.+....+..+..++++|..+..+...+
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~ 292 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFF 292 (309)
T ss_dssp -HHHH----------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHH
Confidence 999999999999999988777665543
No 271
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=83.87 E-value=3 Score=31.56 Aligned_cols=68 Identities=15% Similarity=0.191 Sum_probs=42.3
Q ss_pred HHHHHHHhhhhhhhhcccccccccccCCCC--CCCCcchhHHHHH---HHHHHHHHHHHhhHHHHhhhcchhhHhh
Q psy6141 9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSR--VSPTEEEASWIGS---LMPLSALFGGMAGGPLIESLGRRTTILS 79 (144)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~i~~~~~g~l~d~~g~r~~~~~ 79 (144)
..+.+.+++.|...+.....+|.+++ + .+.+.++.+.... .+++=.+-+.++=.....|+||||.-++
T Consensus 3 ~lL~~LY~lQGiP~GL~~gsiPflL~---~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWii 75 (544)
T PF13000_consen 3 ALLVLLYFLQGIPLGLAFGSIPFLLQ---SMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWII 75 (544)
T ss_pred eHHHHHHHHcCcccccccccchhhhc---cccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhh
Confidence 34567778888888777667888887 5 5667766654322 2333223333333455557999998664
No 272
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=82.07 E-value=5.5 Score=25.05 Aligned_cols=72 Identities=17% Similarity=0.201 Sum_probs=40.0
Q ss_pred HHHhhhcchhhHhhhchHHHHHHHHHHH-----------hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhh
Q psy6141 66 PLIESLGRRTTILSTGLPFIVSFLLIAL-----------ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTL 134 (144)
Q Consensus 66 ~l~d~~g~r~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~ 134 (144)
.++||+-||..+.. .+..+.+...+.. .+++..++....+.|.+. ..+.+..++...++++.|..
T Consensus 56 ~Vs~RM~rRm~~~~-GiP~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gl---lGisYGilSaSWD~~r~GSl 131 (153)
T PF11947_consen 56 VVSNRMLRRMAVFV-GIPTALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGL---LGISYGILSASWDPEREGSL 131 (153)
T ss_pred HHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHH---HhhhhhhcccccCCCCCCCc
Confidence 46777766555443 3333333332221 123444555555555553 33556667777888888988
Q ss_pred chhhhhh
Q psy6141 135 GLLPTFL 141 (144)
Q Consensus 135 ~~~~~~~ 141 (144)
.|+..+-
T Consensus 132 lG~~e~~ 138 (153)
T PF11947_consen 132 LGWEEFK 138 (153)
T ss_pred ccHHHHH
Confidence 8876543
No 273
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=77.77 E-value=15 Score=23.94 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhHHHHhhhcchhh
Q psy6141 51 SLMPLSALFGGMAGGPLIESLGRRTT 76 (144)
Q Consensus 51 ~~~~~~~~i~~~~~g~l~d~~g~r~~ 76 (144)
.-+.++.+++.++.|++.||..+|+.
T Consensus 89 gGyL~gfi~aa~l~G~l~~k~~~~~~ 114 (184)
T COG1268 89 GGYLIGFIIAAFLIGLLAEKIRKRNG 114 (184)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhcccc
Confidence 34677888999999999999876333
No 274
>KOG1479|consensus
Probab=77.72 E-value=21 Score=26.37 Aligned_cols=114 Identities=17% Similarity=0.111 Sum_probs=67.2
Q ss_pred ccccccccccCCCCCCC-CcchhHHHHHH-HHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH---------
Q psy6141 25 TSPAIPSMNQMGSRVSP-TEEEASWIGSL-MPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL--------- 93 (144)
Q Consensus 25 ~~~~~p~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~--------- 93 (144)
.....|.+....+.-+. +.......... +++...+|.+...++.++- ||+. .+..++-....-...+
T Consensus 262 TLsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l-~i~v~lR~lfiPlF~~cn~~~~~v~ 339 (406)
T KOG1479|consen 262 TLSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPD-PRKL-TIPVLLRLLFIPLFLLCNYPPLPVV 339 (406)
T ss_pred eeEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCC-Ccee-hHHHHHHHHHHHHHHHhccCCCCce
Confidence 33356666552111122 22223334444 7888889977777766543 3333 2223332222222221
Q ss_pred hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141 94 ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF 140 (144)
Q Consensus 94 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 140 (144)
-++-+++.+...+.|+..|-..+....+..+..|++++-.+..+...
T Consensus 340 ~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~ 386 (406)
T KOG1479|consen 340 FESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVF 386 (406)
T ss_pred ecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHH
Confidence 24556677788999999998888888899999998888776665544
No 275
>PRK03612 spermidine synthase; Provisional
Probab=77.68 E-value=29 Score=26.52 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=27.0
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh
Q psy6141 38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIES 70 (144)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~ 70 (144)
-+|.+....+.+.+.+..|..+|..+++++.++
T Consensus 44 ~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~ 76 (521)
T PRK03612 44 LLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD 76 (521)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 456677788889999999999999998887644
No 276
>KOG3097|consensus
Probab=74.65 E-value=6.7 Score=28.26 Aligned_cols=73 Identities=22% Similarity=0.204 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccC
Q psy6141 54 PLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQ 127 (144)
Q Consensus 54 ~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ 127 (144)
....+.+..+.+.+..++|-|+++.++......... .-+-+.+..++-.....|++.+...+.--+|+++.-.
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~ 140 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ 140 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence 344455666666899999999998877665544322 2233556677778889999998887766667666554
No 277
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=72.31 E-value=7.6 Score=22.77 Aligned_cols=48 Identities=8% Similarity=-0.026 Sum_probs=37.7
Q ss_pred chhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHH
Q psy6141 44 EEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLI 91 (144)
Q Consensus 44 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~ 91 (144)
+..+-+...+.-..++.++.+++..|+..+.+.=.++..+..++..+.
T Consensus 54 ~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI 101 (107)
T PF02694_consen 54 AAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAII 101 (107)
T ss_pred ccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHhe
Confidence 456778888888999999999999999888777666766666665544
No 278
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=68.80 E-value=26 Score=21.92 Aligned_cols=40 Identities=25% Similarity=0.250 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHH
Q psy6141 50 GSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFL 89 (144)
Q Consensus 50 ~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 89 (144)
+.-+-++..+.....|++.+|..+++...........+..
T Consensus 59 TgGyl~gf~~~a~i~g~~~~~~~~~~~~~~~~~~~~~g~~ 98 (148)
T PF02632_consen 59 TGGYLLGFPLAALIIGLLAERLKRSRSFLRLILAMLVGLL 98 (148)
T ss_pred CChHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 3446777888888999999998776433333333333333
No 279
>PRK02237 hypothetical protein; Provisional
Probab=68.51 E-value=16 Score=21.57 Aligned_cols=49 Identities=6% Similarity=-0.097 Sum_probs=37.5
Q ss_pred chhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHH
Q psy6141 44 EEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIA 92 (144)
Q Consensus 44 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 92 (144)
++.+-+...+.-.+++.++.+++..|+..+-+.=.++.....++..+..
T Consensus 56 ~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~ 104 (109)
T PRK02237 56 AAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIM 104 (109)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhe
Confidence 3467788888889999999999999998876666666666666654443
No 280
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=68.35 E-value=51 Score=25.14 Aligned_cols=83 Identities=14% Similarity=0.103 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHH-HHHHHHHHHhhHHHHhhhcchhhHhhhchH
Q psy6141 5 VLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLM-PLSALFGGMAGGPLIESLGRRTTILSTGLP 83 (144)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~ 83 (144)
+...+.+.+..++..+.+...-..-....- + ..+++...++-... .-..++......+++|++++++..-.....
T Consensus 23 ~~k~~~l~~m~f~i~f~y~~lR~~KD~lvv---t-~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~ 98 (491)
T PF03219_consen 23 LKKFLPLALMFFFILFNYTILRDLKDTLVV---T-AQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIP 98 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeEEE---e-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 444555666666666555544333222222 1 12566666665533 335566777889999999999987655555
Q ss_pred HHHHHHHH
Q psy6141 84 FIVSFLLI 91 (144)
Q Consensus 84 ~~~~~~~~ 91 (144)
+.....+.
T Consensus 99 F~~fF~~f 106 (491)
T PF03219_consen 99 FLGFFALF 106 (491)
T ss_pred HHHHHHHH
Confidence 54444433
No 281
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.21 E-value=14 Score=21.77 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhhHHHHhhh
Q psy6141 50 GSLMPLSALFGGMAGGPLIESL 71 (144)
Q Consensus 50 ~~~~~~~~~i~~~~~g~l~d~~ 71 (144)
.+.=.++..+-....||+.||+
T Consensus 48 lssefIsGilVGa~iG~llD~~ 69 (116)
T COG5336 48 LSSEFISGILVGAGIGWLLDKF 69 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555566666677777775
No 282
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=67.61 E-value=23 Score=26.42 Aligned_cols=72 Identities=19% Similarity=0.139 Sum_probs=45.1
Q ss_pred HHHHhhhhhhhhcccccccccccCCCCCCC-CcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHH
Q psy6141 12 SLGSMIVGFASAYTSPAIPSMNQMGSRVSP-TEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIV 86 (144)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~ 86 (144)
....++..+.........|.++. +... +---.+.....-....++..+..|.+.||..|+++...+.+..-.
T Consensus 8 y~sh~ls~w~dR~w~Fa~~L~L~---~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~ 80 (432)
T PF06963_consen 8 YLSHFLSTWGDRMWEFAVPLFLI---SIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNL 80 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHH
Confidence 33444444445555555666655 3322 333345555566777788999999999999999987766544433
No 283
>KOG3880|consensus
Probab=61.73 E-value=34 Score=24.81 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=36.9
Q ss_pred HHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhh
Q psy6141 92 ALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTF 140 (144)
Q Consensus 92 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 140 (144)
-+.++++...+.-+..|+-.|..+....--+.+-.++++|-.+++....
T Consensus 337 ~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~ 385 (409)
T KOG3880|consen 337 WFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSI 385 (409)
T ss_pred HhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhhee
Confidence 3567888888888889998888877766666666778888887776543
No 284
>PLN02878 homogentisate phytyltransferase
Probab=57.12 E-value=65 Score=22.61 Aligned_cols=71 Identities=13% Similarity=0.127 Sum_probs=34.0
Q ss_pred hcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 71 LGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 71 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
+|+|++..++..+..++........-.........+...++........ .-+...+.+.+....+.++..|
T Consensus 196 lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~-~rs~~vD~~sk~~i~~fY~fiw 266 (280)
T PLN02878 196 LGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILW-QRAQSVDLSSKAAITSFYMFIW 266 (280)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHhHhcCcccHHHHHHHHHHHH
Confidence 6777777766665555444222211111112233344444443322222 2244555566777777776655
No 285
>KOG3810|consensus
Probab=55.76 E-value=22 Score=26.14 Aligned_cols=100 Identities=15% Similarity=0.137 Sum_probs=71.4
Q ss_pred CCCCCcchhH-HHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhh
Q psy6141 38 RVSPTEEEAS-WIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASL 116 (144)
Q Consensus 38 ~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 116 (144)
+.+++.++.. -+.-...-.+++.-.+.=.+.|....|++++.-.+..........+.++.+.+=+.-++.|..... ..
T Consensus 35 ~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAa-EI 113 (433)
T KOG3810|consen 35 DKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAA-EI 113 (433)
T ss_pred CCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHH-HH
Confidence 4555555442 233344455566677777899999999999888888888888888888888776667777776543 45
Q ss_pred hHHHHHhhccCcchhhhhchhh
Q psy6141 117 ALPVYLGETVQPEVRGTLGLLP 138 (144)
Q Consensus 117 ~~~~~~~~~~~~~~r~~~~~~~ 138 (144)
+.++++-+..|++++.++.+..
T Consensus 114 AYysYIYs~Vd~~~Yqrvt~y~ 135 (433)
T KOG3810|consen 114 AYYSYIYSKVDPEMYKRVTGYC 135 (433)
T ss_pred hhhheeeeecCHHHHHHHHHHh
Confidence 6677888888888877766643
No 286
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=52.94 E-value=76 Score=22.12 Aligned_cols=91 Identities=15% Similarity=0.118 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhh-----chHHHHHHHHHHH-h----chHHHHHHHHHHhhhhhhhhhh
Q psy6141 47 SWIGSLMPLSALFGGMAGGPLIESLGRRTTILST-----GLPFIVSFLLIAL-A----NGVPMILAGRCVAGFCVGIASL 116 (144)
Q Consensus 47 ~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~-----~~~~~~~~~~~~~-~----~~~~~~~~~~~~~g~~~g~~~~ 116 (144)
......+..|..+|.+..|.....-=+||..+.. .++.++..+.... . .+...+++..++.|.+.=+.++
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3445556666667767777776654344444332 2222222222111 1 1345567777777776544455
Q ss_pred hHHHHHhhc--cCcchhhhhchh
Q psy6141 117 ALPVYLGET--VQPEVRGTLGLL 137 (144)
Q Consensus 117 ~~~~~~~~~--~~~~~r~~~~~~ 137 (144)
......-|. .+|++-|...|+
T Consensus 224 ViL~lPhEyK~~~pk~ig~~Fg~ 246 (267)
T PF07672_consen 224 VILNLPHEYKGYNPKKIGIQFGL 246 (267)
T ss_pred HHhcChhhhcCCCcceehhHHHH
Confidence 444333333 233444444433
No 287
>KOG4830|consensus
Probab=52.79 E-value=4.6 Score=28.22 Aligned_cols=53 Identities=9% Similarity=0.105 Sum_probs=37.6
Q ss_pred hhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhH---------HHHhhhcchhhH
Q psy6141 22 SAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGG---------PLIESLGRRTTI 77 (144)
Q Consensus 22 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g---------~l~d~~g~r~~~ 77 (144)
.....+++-.+++ +.+.++.....+.....+...+..++.| +-.||+|||+..
T Consensus 33 AScWFTYlllflt---qiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~w 94 (412)
T KOG4830|consen 33 ASCWFTYLLLFLT---QIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMSW 94 (412)
T ss_pred HHHHHHHHHHHHH---HhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceeee
Confidence 3333444555666 6777887777888888888888888875 446789988753
No 288
>COG2119 Predicted membrane protein [Function unknown]
Probab=52.04 E-value=61 Score=21.25 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHH
Q psy6141 53 MPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSF 88 (144)
Q Consensus 53 ~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 88 (144)
..+...++...+.++++|+..|+.-..+.+++.+..
T Consensus 143 ~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fa 178 (190)
T COG2119 143 MILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFA 178 (190)
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 445566777888899999998888877766655543
No 289
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=48.09 E-value=1.3e+02 Score=23.25 Aligned_cols=82 Identities=20% Similarity=0.096 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHH-HHHHHHHhhHHHHhhhcchhhHhhhchHHH
Q psy6141 7 ASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPL-SALFGGMAGGPLIESLGRRTTILSTGLPFI 85 (144)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~ 85 (144)
...-+.+..++..+.+...-+.-..+.. -..+++...++-...-. +.++..++.+++.++..+++..-..+..+.
T Consensus 28 kflpl~Ll~f~I~~ny~~lR~lKDslvv----~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~ 103 (509)
T COG3202 28 KFLPLALLFFCILFNYNLLRSLKDSLVV----TRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFL 103 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhheEe----ecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 3344444555555544443332222221 13456677777666555 677888899999999999998776666666
Q ss_pred HHHHHHH
Q psy6141 86 VSFLLIA 92 (144)
Q Consensus 86 ~~~~~~~ 92 (144)
...++++
T Consensus 104 ~fF~LFa 110 (509)
T COG3202 104 GFFALFA 110 (509)
T ss_pred HHHHHHH
Confidence 5555554
No 290
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=46.94 E-value=1.3e+02 Score=22.89 Aligned_cols=107 Identities=16% Similarity=0.159 Sum_probs=68.4
Q ss_pred ccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhc---hHHHHH
Q psy6141 25 TSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALAN---GVPMIL 101 (144)
Q Consensus 25 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 101 (144)
-....|..... +.+.++++...+.+...+...++.+.--....+.|-|.....+.....++........ ......
T Consensus 32 ~~V~VPlivg~--a~~l~~~~~~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~lG~sFafi~p~i~~~~~~g~~~~~~~ 109 (451)
T COG2233 32 ATVLVPLLVGL--ALGLSAEDTAYLISADLLASGIGTLLQLLGTGPGGSGLPSYLGSSFAFVAPMIAIGGTTGDGIAALL 109 (451)
T ss_pred cchHhhHHhcc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCeeEechHHHHHHHHHHHhccCCchHHHH
Confidence 33445655553 7899999999999998888888888877644456667777777666666665554432 245555
Q ss_pred HHHHHhhhhhhhhhhhHHHHHhhccCcchhhh
Q psy6141 102 AGRCVAGFCVGIASLALPVYLGETVQPEVRGT 133 (144)
Q Consensus 102 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~ 133 (144)
-+.+..|+..-.........+..++||-.-|.
T Consensus 110 G~ii~ag~~~~li~~~~~~~l~rlfPPvVtG~ 141 (451)
T COG2233 110 GGIIAAGLVYFLISPIVKIRLARLFPPVVTGP 141 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCceEEe
Confidence 55555555544433333227778888866554
No 291
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=43.70 E-value=29 Score=18.47 Aligned_cols=37 Identities=14% Similarity=-0.000 Sum_probs=28.8
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcch
Q psy6141 38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRR 74 (144)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r 74 (144)
-.+.+..+.+.......+..++-+.+.-+.-||+-+|
T Consensus 28 ~~~~~~~~a~~l~v~~s~~a~~wn~ifN~~FD~~~~r 64 (67)
T PF05232_consen 28 WLGISLWQAGALDVGLSLFAMVWNYIFNWLFDKIEPR 64 (67)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566677788888888888888888888888887654
No 292
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=43.18 E-value=44 Score=18.94 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhh
Q psy6141 98 PMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGT 133 (144)
Q Consensus 98 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~ 133 (144)
+-++++|.+.|-+.+...........|.-|...-|.
T Consensus 32 ~RL~iGR~ilGs~~S~~Aga~Li~~Pdl~plAv~Gl 67 (89)
T PF04550_consen 32 LRLFIGRVILGSAVSVVAGAALIQFPDLPPLAVIGL 67 (89)
T ss_pred hhHHhHHHHHhhHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 345666666666665555555555555555444433
No 293
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=42.93 E-value=1.3e+02 Score=22.08 Aligned_cols=95 Identities=18% Similarity=0.148 Sum_probs=51.2
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH-hchHHHHHHHHHHhhhhhhhhhh
Q psy6141 38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL-ANGVPMILAGRCVAGFCVGIASL 116 (144)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~ 116 (144)
..|.++++.........+...++..+-.+-.-++|.|.....+.....+....... ..++.....+.++.|+..-...
T Consensus 22 a~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~~~~~~~~ga~~v~Gii~illg- 100 (406)
T TIGR03173 22 ALGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAGGGLGAIFGAVIVAGLFVILLA- 100 (406)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-
Confidence 45788887777777777777777777643333567777776665554443332221 2233333334444443322222
Q ss_pred hHHHHHhhccCcchhhh
Q psy6141 117 ALPVYLGETVQPEVRGT 133 (144)
Q Consensus 117 ~~~~~~~~~~~~~~r~~ 133 (144)
.....+.+.+|+...+.
T Consensus 101 ~~~~~l~~~iPp~v~G~ 117 (406)
T TIGR03173 101 PFFSKLVRFFPPVVTGT 117 (406)
T ss_pred HHHHHHHHHCCcHHHHH
Confidence 23335567777665543
No 294
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=42.07 E-value=73 Score=18.79 Aligned_cols=68 Identities=21% Similarity=0.210 Sum_probs=44.8
Q ss_pred HHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh-chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCc
Q psy6141 61 GMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA-NGVPMILAGRCVAGFCVGIASLALPVYLGETVQP 128 (144)
Q Consensus 61 ~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 128 (144)
.-..=+.+|.+.|+...+...+...++....+.+ .+.+.=.+...-.|+|.............|-.+.
T Consensus 17 ~~~~lK~s~gf~~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~ 85 (106)
T COG2076 17 GTTLLKYSDGFTRLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSL 85 (106)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCH
Confidence 3344578898889888888888877777776664 4555555566667777655555555555555544
No 295
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=41.57 E-value=1.3e+02 Score=21.41 Aligned_cols=22 Identities=9% Similarity=0.203 Sum_probs=14.3
Q ss_pred HHhhccCcchhhhhchhhhhhc
Q psy6141 121 YLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 121 ~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
+-+...+.+++....+.++..|
T Consensus 271 ~~~~~~~~~~~~~~~~~y~~iw 292 (308)
T PRK12887 271 WRSQRVDLQDKQAIAQFYQFIW 292 (308)
T ss_pred HHHhhcCcccchHHHHHHHHHH
Confidence 3345566677777777777655
No 296
>KOG3880|consensus
Probab=39.56 E-value=24 Score=25.55 Aligned_cols=70 Identities=24% Similarity=0.224 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhh
Q psy6141 46 ASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIAS 115 (144)
Q Consensus 46 ~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 115 (144)
.+.+...-.+-.++.........||+-...-..+..++.+.+..+.+++++.++-+.+-.+..++.|...
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGE 133 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGE 133 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcce
Confidence 4555666666677888888889999755444455566777777777888888887777777766665543
No 297
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=38.32 E-value=88 Score=22.20 Aligned_cols=77 Identities=8% Similarity=0.114 Sum_probs=39.6
Q ss_pred chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh---hcchhhHhh
Q psy6141 3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES---LGRRTTILS 79 (144)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~---~g~r~~~~~ 79 (144)
|+.+..+.+...++..-...+.....+....+ ..++-.+..++..+.. +..+..+-.++ +|.||.=++
T Consensus 22 r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLAD---a~Hml~D~~al~lal~------A~~~a~r~~~~~~TfGy~R~eiL 92 (296)
T COG1230 22 RRLLIALLLNLAFMLIEIIGGLLTGSLALLAD---ALHMLSDALALLLALI------AIKLARRPATKRFTFGYKRLEIL 92 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHh---HHHHHHHHHHHHHHHH------HHHHhcCCCCCCCCccHhHHHHH
Confidence 44555555555555555555555556666665 6666555555443322 22223333333 676676555
Q ss_pred hchHHHHHH
Q psy6141 80 TGLPFIVSF 88 (144)
Q Consensus 80 ~~~~~~~~~ 88 (144)
+....++..
T Consensus 93 aa~~nav~L 101 (296)
T COG1230 93 AAFLNALLL 101 (296)
T ss_pred HHHHHHHHH
Confidence 554444433
No 298
>KOG2325|consensus
Probab=37.44 E-value=39 Score=25.75 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=30.2
Q ss_pred HHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 104 RCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 104 ~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
-++.|.+.........+.-+|...+++++...++.+...
T Consensus 395 i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~ 433 (488)
T KOG2325|consen 395 IVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISG 433 (488)
T ss_pred hheeccccccccchHHHHHHHHhCCccccceeEEEEecc
Confidence 345677777667778888899999999999888776543
No 299
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=36.89 E-value=49 Score=18.82 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhhHHHHhhhcch
Q psy6141 52 LMPLSALFGGMAGGPLIESLGRR 74 (144)
Q Consensus 52 ~~~~~~~i~~~~~g~l~d~~g~r 74 (144)
.......+.....|.+.||..||
T Consensus 83 ~~~~~~l~va~v~g~l~~~~r~~ 105 (105)
T PF13493_consen 83 ITFAVFLVVALVTGYLADRYRRQ 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Confidence 34555667788889999998765
No 300
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=36.68 E-value=1.9e+02 Score=22.14 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHH
Q psy6141 46 ASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIV 86 (144)
Q Consensus 46 ~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~ 86 (144)
.|...+..++..++..++.+.+.+|+|-+...++.-+...+
T Consensus 321 mG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~li 361 (491)
T PF03219_consen 321 MGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILI 361 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHH
Confidence 35556667777777888899999999988877665444333
No 301
>COG4769 Predicted membrane protein [Function unknown]
Probab=36.36 E-value=1.2e+02 Score=19.65 Aligned_cols=22 Identities=9% Similarity=-0.082 Sum_probs=14.0
Q ss_pred HHHHHHhhHHHHhhhcchhhHh
Q psy6141 57 ALFGGMAGGPLIESLGRRTTIL 78 (144)
Q Consensus 57 ~~i~~~~~g~l~d~~g~r~~~~ 78 (144)
..+.+...-++..++|+|..-.
T Consensus 86 G~i~S~L~m~~l~~f~~k~~S~ 107 (181)
T COG4769 86 GAILSTLFMYFLYQFGPKYLSL 107 (181)
T ss_pred HHHHHHHHHHHHHHcCCceEee
Confidence 3444455557778889887733
No 302
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=36.31 E-value=60 Score=16.17 Aligned_cols=27 Identities=11% Similarity=0.188 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhhHHHHhh-hcchhhHh
Q psy6141 52 LMPLSALFGGMAGGPLIES-LGRRTTIL 78 (144)
Q Consensus 52 ~~~~~~~i~~~~~g~l~d~-~g~r~~~~ 78 (144)
...+..++.....|+..|+ ++.++...
T Consensus 8 ~~~~~~i~~g~~~G~~lD~~~~t~p~~~ 35 (55)
T PF09527_consen 8 FTMAAPILVGFFLGYWLDKWFGTSPWFT 35 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 3444555566666777776 45544433
No 303
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=36.00 E-value=83 Score=17.67 Aligned_cols=41 Identities=15% Similarity=0.040 Sum_probs=26.9
Q ss_pred HHHHHHHhhHHHHhhhcc-------hhhHhhhchHHHHHHHHHHHhch
Q psy6141 56 SALFGGMAGGPLIESLGR-------RTTILSTGLPFIVSFLLIALANG 96 (144)
Q Consensus 56 ~~~i~~~~~g~l~d~~g~-------r~~~~~~~~~~~~~~~~~~~~~~ 96 (144)
+.....+..+++.+|..+ ++.+..+..+...+.+++++.++
T Consensus 30 ~~ta~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~ig~~gGfl~ayqrS 77 (86)
T PF10785_consen 30 GATAASPPLGYYMERSAPSRVGRGGGPAMRLAGAIGFFGGFLLAYQRS 77 (86)
T ss_pred HHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 334455666677776654 67777777777777777776554
No 304
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=35.55 E-value=2e+02 Score=21.99 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHH
Q psy6141 46 ASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIV 86 (144)
Q Consensus 46 ~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~ 86 (144)
.+.+....++..++.+++.+++.+|+|-+...++.-+...+
T Consensus 305 ~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 305 MGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 35556666777777788889999999988777665554444
No 305
>COG1009 NuoL NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=33.95 E-value=2.2e+02 Score=22.60 Aligned_cols=69 Identities=13% Similarity=0.016 Sum_probs=47.0
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhh
Q psy6141 41 PTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFC 110 (144)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 110 (144)
+|.-.......+..++.++-..-.+++.|..|++|-+. -..++..+......++|...+++..=..|++
T Consensus 72 iD~Ls~lm~~lVt~vg~LI~iYsi~YM~~d~~~~RFfa-~l~lF~~sMl~lVlSdNll~l~~~WE~~gl~ 140 (606)
T COG1009 72 IDGLSLLMALLVTGVGFLIHLYSIGYMSHDPGLGRFFA-YLLLFTGSMLGLVLSDNLLLLFVFWELTGLA 140 (606)
T ss_pred EchHHHHHHHHHHHHHHHHHHHHHHHhccCCCcChHHH-HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 34444555566678888888888999998888555433 4456666677777888888777665444444
No 306
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=33.91 E-value=1.5e+02 Score=23.97 Aligned_cols=47 Identities=17% Similarity=0.080 Sum_probs=25.5
Q ss_pred HHHHhh----hcchhhHhhhchHHHHHHHHHHHh-chHHHHHHHHHHhhhhh
Q psy6141 65 GPLIES----LGRRTTILSTGLPFIVSFLLIALA-NGVPMILAGRCVAGFCV 111 (144)
Q Consensus 65 g~l~d~----~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~ 111 (144)
+-+.|. .||.+-++++.++++++.+...+. +..+.+.....+.+++.
T Consensus 44 ~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll~~~p~~~~~~l~~~tf~~ 95 (701)
T TIGR01667 44 AGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLLFPKPWLFPFLLTLLTFGF 95 (701)
T ss_pred hccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 344554 355667777777777776666554 33444444444444433
No 307
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=33.48 E-value=2.1e+02 Score=21.51 Aligned_cols=81 Identities=14% Similarity=0.047 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHH-HHH----h---chHHHHHHHHHHhhhhhhhhhhhHHHH
Q psy6141 50 GSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLL-IAL----A---NGVPMILAGRCVAGFCVGIASLALPVY 121 (144)
Q Consensus 50 ~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~-~~~----~---~~~~~~~~~~~~~g~~~g~~~~~~~~~ 121 (144)
.....+..++..+....+..|+..|.-+..+.+...+..+. ..+ . ..++..++.-++.|++.+..+.....+
T Consensus 51 ~~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gl 130 (437)
T TIGR00939 51 TLASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFGL 130 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchhh
Confidence 33455555555666666666666544444443322222211 111 1 124444555566777777776666555
Q ss_pred HhhccCcchh
Q psy6141 122 LGETVQPEVR 131 (144)
Q Consensus 122 ~~~~~~~~~r 131 (144)
.+ .+|++.-
T Consensus 131 a~-~fp~~~~ 139 (437)
T TIGR00939 131 AG-VFPSTYS 139 (437)
T ss_pred cc-cCCHHHH
Confidence 44 5566543
No 308
>PF04474 DUF554: Protein of unknown function (DUF554); InterPro: IPR007563 This is a family of uncharacterised prokaryotic proteins. Multiple predicted transmembrane regions suggest that the protein is membrane associated.
Probab=32.87 E-value=1.5e+02 Score=20.16 Aligned_cols=57 Identities=12% Similarity=0.111 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhh
Q psy6141 53 MPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFC 110 (144)
Q Consensus 53 ~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 110 (144)
..+|..+|..+..++.||+........+.....++.-...-.++...+++ ..+.|.-
T Consensus 11 Il~G~~iG~~~~~~i~~~~~~~l~~~~Gl~~l~iGi~~~~~~~~~~~vi~-slvlG~i 67 (226)
T PF04474_consen 11 ILLGGLIGLLLGRRIPERIKDTLMQALGLCVLAIGISMALKGQNPLLVIL-SLVLGTI 67 (226)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhhHHHHHHHHHHHHccCccHHHHH-HHHHHHH
Confidence 34556666666677777775544444454444444332222344444443 3444433
No 309
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=31.74 E-value=1.7e+02 Score=23.64 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=23.6
Q ss_pred HHHHhh----hcchhhHhhhchHHHHHHHHHHHh-chHHHHHHHHHHhh
Q psy6141 65 GPLIES----LGRRTTILSTGLPFIVSFLLIALA-NGVPMILAGRCVAG 108 (144)
Q Consensus 65 g~l~d~----~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g 108 (144)
+-++|. .||.+-+++..+.+.++.+...+. +..+.+.....+.+
T Consensus 44 ~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~~~p~lf~~~l~~~t 92 (704)
T TIGR01666 44 AALVDLDDRLTGRLKNVIFTLICFSIASFSVELLFGKPWLFAVGLTVST 92 (704)
T ss_pred hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 455555 355666667777777666655543 33444444333333
No 310
>COG1811 Uncharacterized membrane protein, possible Na+ channel or pump [General function prediction only]
Probab=31.68 E-value=1.5e+02 Score=20.07 Aligned_cols=50 Identities=16% Similarity=0.070 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHH
Q psy6141 54 PLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAG 103 (144)
Q Consensus 54 ~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (144)
-+|.+++..+..++.||+.+-..-..+.....++.-...-+.+....++.
T Consensus 13 l~G~iiG~l~~~klper~k~~l~~~~Gl~~l~iGI~m~~~~~n~~~~ils 62 (228)
T COG1811 13 LIGGIIGLLIGKKLPERIKDILMQCLGLAILGIGIKMALQAKNDIMILLA 62 (228)
T ss_pred HHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 34555666666667776644333344444444433333335565555544
No 311
>KOG2601|consensus
Probab=31.34 E-value=96 Score=23.28 Aligned_cols=68 Identities=15% Similarity=0.083 Sum_probs=39.6
Q ss_pred HHHhhhhhhhhcccccccccccCCCCC-CCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchH
Q psy6141 13 LGSMIVGFASAYTSPAIPSMNQMGSRV-SPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLP 83 (144)
Q Consensus 13 ~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~ 83 (144)
++.+...+..-........++. ++ +.+-...+.....-....++..+..|...|+..|+|++-...++
T Consensus 34 ~gy~lt~wgdR~W~F~VsL~M~---~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~l 102 (503)
T KOG2601|consen 34 LGYFLTTWGDRMWEFSVSLFMI---LLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLL 102 (503)
T ss_pred HHHHHhHhhHhHHHHHHHHHHH---HHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhh
Confidence 3444444433333334444444 32 32333444445555666778888889999999999987655443
No 312
>KOG2601|consensus
Probab=30.98 E-value=94 Score=23.33 Aligned_cols=33 Identities=21% Similarity=0.120 Sum_probs=24.9
Q ss_pred hhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 109 FCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 109 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
+|.=+...+..-.++|..|+++|....|+.+..
T Consensus 398 ~GLW~fDlAVtqimQe~VpEseR~vv~gvqnsL 430 (503)
T KOG2601|consen 398 LGLWMFDLAVTQIMQETVPESERCVVFGVQNSL 430 (503)
T ss_pred hhHHhccHHHHHHHHHhcchhhhhhhHhHHHHH
Confidence 333345666777889999999999998887653
No 313
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=30.89 E-value=1.7e+02 Score=21.47 Aligned_cols=100 Identities=15% Similarity=0.191 Sum_probs=42.9
Q ss_pred ccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH------hchHHHHHH
Q psy6141 29 IPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL------ANGVPMILA 102 (144)
Q Consensus 29 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 102 (144)
.|....+ ..|. +++.....+...+...++.++-+. +.|.|..+.-+............. ..++.....
T Consensus 21 ~P~il~~--~~g~-~~~~~~li~at~l~sgi~Tllq~~---~~g~~lpl~~G~s~~~~~~~~~~~g~~~~~~~~~~~~~g 94 (389)
T PF00860_consen 21 VPLILAA--AFGL-DADTAALISATFLVSGIATLLQGL---PAGHRLPLVPGPSFAFIFAFMIVIGMAESGGYGLQAALG 94 (389)
T ss_dssp HHHTTTS--------------HHHHHHHHHHHHHHHHH---HTTT-----EEE-GGGHHHHHGGG-----HHHHHHHHHH
T ss_pred hHHHHhh--cccc-cchhhHHHHHHHHHHHHHHHHHHh---cCCCceecccccchhhhhhhhcccccccchhhchhhhhh
Confidence 4555542 3455 444446666677777777777777 678888777666665555322222 223334444
Q ss_pred HHHHhhhhhhhhhhhH-HHHHhhccCcchhhhh
Q psy6141 103 GRCVAGFCVGIASLAL-PVYLGETVQPEVRGTL 134 (144)
Q Consensus 103 ~~~~~g~~~g~~~~~~-~~~~~~~~~~~~r~~~ 134 (144)
+-++.|+..-...... ...+.+.+|+..++..
T Consensus 95 ~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v 127 (389)
T PF00860_consen 95 AVLISGILFILLGLTGLRKRLRRLFPPVVKGAV 127 (389)
T ss_dssp HHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHhChhheEee
Confidence 4444444432222111 2266788888877653
No 314
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=28.26 E-value=99 Score=22.19 Aligned_cols=47 Identities=9% Similarity=0.154 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHH
Q psy6141 47 SWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL 93 (144)
Q Consensus 47 ~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 93 (144)
.+.....++|..++....+++.|+.|....+.+..+...++.+....
T Consensus 75 ~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 75 NWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 46677788889999999999999999988888888888877776654
No 315
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=28.05 E-value=1.4e+02 Score=17.71 Aligned_cols=35 Identities=14% Similarity=0.071 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHH
Q psy6141 52 LMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIV 86 (144)
Q Consensus 52 ~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~ 86 (144)
...+...++...+|.++.|.-++|-.+.+......
T Consensus 42 ~~~~i~~ls~~~GG~~a~~~~~~kG~l~G~~~Gl~ 76 (116)
T PF12670_consen 42 LVVIIYILSVFIGGFYAGRKAGSKGWLHGLLVGLL 76 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 34445556666666666666666665555544443
No 316
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=27.91 E-value=1.3e+02 Score=17.51 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=11.0
Q ss_pred HHHHHHHhhHHHHhh-hcchhhHh
Q psy6141 56 SALFGGMAGGPLIES-LGRRTTIL 78 (144)
Q Consensus 56 ~~~i~~~~~g~l~d~-~g~r~~~~ 78 (144)
...+...+.|...|+ ++-++...
T Consensus 54 ~pil~G~~lG~WLD~~~~t~~~~t 77 (100)
T TIGR02230 54 IPTLLGVAVGIWLDRHYPSPFSWT 77 (100)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHH
Confidence 334444455555555 55544333
No 317
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=27.90 E-value=53 Score=22.38 Aligned_cols=25 Identities=16% Similarity=0.041 Sum_probs=17.3
Q ss_pred HHhhhhhhhhhhhHHHHHhhccCcc
Q psy6141 105 CVAGFCVGIASLALPVYLGETVQPE 129 (144)
Q Consensus 105 ~~~g~~~g~~~~~~~~~~~~~~~~~ 129 (144)
.-.|+|.|..++....-+.+.+|+.
T Consensus 179 MasGvGSgSMMaAa~~aL~~~~P~~ 203 (241)
T PF11299_consen 179 MASGVGSGSMMAAASGALAAAYPEM 203 (241)
T ss_pred HHcCCcHHHHHHHHHHHHHHHCcch
Confidence 4457777777777777777777653
No 318
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=27.75 E-value=3e+02 Score=21.56 Aligned_cols=92 Identities=12% Similarity=-0.032 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhc-hHHHHHHHHHHhh-hhhhhhhhhHHHHH
Q psy6141 45 EASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALAN-GVPMILAGRCVAG-FCVGIASLALPVYL 122 (144)
Q Consensus 45 ~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g-~~~g~~~~~~~~~~ 122 (144)
+.++..-.+.+|.-.|.-+...+.+ .|-+.. +.+.+...+..+...... -..-+=.. ...| ++.+...++.....
T Consensus 451 ~~GL~lFla~vG~~aG~~f~~~l~~-~G~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~aG~~t~t~~l~~a 527 (562)
T TIGR03802 451 DLGLALFIAVVGLSAGPQAVTAIKE-MGLTLF-LLGIVVTILPLIITMLIGKYVLKYDPA-LLLGALAGARTATPALGAV 527 (562)
T ss_pred HHhHHHHHHHHHHhhhHHHHHHHHH-hhHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCHH-HHHHHhhccCCCcHHHHHH
Confidence 3566666666777777766666643 444433 334444433333222211 11111111 2233 33334455666777
Q ss_pred hhccCcchhhhhchhhh
Q psy6141 123 GETVQPEVRGTLGLLPT 139 (144)
Q Consensus 123 ~~~~~~~~r~~~~~~~~ 139 (144)
.|..+.+.-....+..|
T Consensus 528 ~~~~~~~~~~~gYa~~Y 544 (562)
T TIGR03802 528 LERAGSSVPALGYTITY 544 (562)
T ss_pred HHhcCCCCcccchHhHH
Confidence 77765443333333333
No 319
>PRK10692 hypothetical protein; Provisional
Probab=27.60 E-value=1.3e+02 Score=17.12 Aligned_cols=41 Identities=15% Similarity=0.296 Sum_probs=23.0
Q ss_pred chhhHhhhchHHHHHHHHHHH-----------hchHHHHHHHHHHhhhhhhh
Q psy6141 73 RRTTILSTGLPFIVSFLLIAL-----------ANGVPMILAGRCVAGFCVGI 113 (144)
Q Consensus 73 ~r~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~g~ 113 (144)
||...+++-+++..+.+.+.. .-+.+.++.--.+.|++.|.
T Consensus 3 Rk~a~~~GN~lMglGmv~Mv~gigysi~~~i~~L~Lp~~~~~gal~~IFiGA 54 (92)
T PRK10692 3 RKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQLNLPQFFAHGALLSIFVGA 54 (92)
T ss_pred chhhHHHhhHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHhhHHHHHHHHH
Confidence 556666666666666555432 12455666666666666554
No 320
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=26.99 E-value=43 Score=19.69 Aligned_cols=44 Identities=2% Similarity=-0.174 Sum_probs=29.6
Q ss_pred chhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHH
Q psy6141 44 EEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVS 87 (144)
Q Consensus 44 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 87 (144)
...|-+...+.-.+++.++.+++..|+.-+-+-=..+..+..++
T Consensus 55 ~a~GRvYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G 98 (109)
T COG1742 55 AAFGRVYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAG 98 (109)
T ss_pred hhhhhHHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhc
Confidence 34566677777778888888999888876655545554444333
No 321
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=26.58 E-value=1.9e+02 Score=18.82 Aligned_cols=38 Identities=18% Similarity=0.335 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHH
Q psy6141 52 LMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFL 89 (144)
Q Consensus 52 ~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 89 (144)
...+..+++.++.-.+..|.++|-...+..++..+...
T Consensus 36 ~~~i~ali~g~vyml~~~KV~K~G~~~i~~~i~gl~~~ 73 (186)
T PF09605_consen 36 MPAIAALICGIVYMLMVAKVPKRGAFLIMGIIMGLIFF 73 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH
Confidence 34556677888888899999988887766555555433
No 322
>KOG1479|consensus
Probab=25.22 E-value=3e+02 Score=20.67 Aligned_cols=50 Identities=8% Similarity=-0.173 Sum_probs=21.0
Q ss_pred hhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh
Q psy6141 21 ASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES 70 (144)
Q Consensus 21 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~ 70 (144)
....+.+..|.+.++....+.+..-....+....+..++....-..+.-|
T Consensus 33 pWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~~ 82 (406)
T KOG1479|consen 33 PWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFLNTR 82 (406)
T ss_pred chHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566655311222211112223333444444555555555555
No 323
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=24.22 E-value=3.5e+02 Score=21.18 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=31.9
Q ss_pred HHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhccC
Q psy6141 103 GRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGNI 144 (144)
Q Consensus 103 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 144 (144)
...+..+..-..+....+.-+.+.+|..=|+.+.+.++..|+
T Consensus 411 ~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNL 452 (544)
T PF13000_consen 411 QHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNL 452 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhc
Confidence 345555666666777888889999999999999888877653
No 324
>KOG3574|consensus
Probab=24.16 E-value=3.3e+02 Score=20.79 Aligned_cols=106 Identities=14% Similarity=0.071 Sum_probs=54.4
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhh------cchhhHhhhchHHHHHHHHHH--Hhc-------hHHHHHH
Q psy6141 38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESL------GRRTTILSTGLPFIVSFLLIA--LAN-------GVPMILA 102 (144)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~------g~r~~~~~~~~~~~~~~~~~~--~~~-------~~~~~~~ 102 (144)
|.|.+.++.+.+.....-..++.....|+++..- -|+..+-+.........+... +.+ .++.+.+
T Consensus 294 e~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i 373 (510)
T KOG3574|consen 294 EHGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLI 373 (510)
T ss_pred HcCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHH
Confidence 7889998887766444444444444444444321 111122221111111111111 111 1222222
Q ss_pred -HHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhcc
Q psy6141 103 -GRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGN 143 (144)
Q Consensus 103 -~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 143 (144)
...+.+...-..+....+..+++.||..-|+.+.+.++..|
T Consensus 374 ~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsn 415 (510)
T KOG3574|consen 374 TSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSN 415 (510)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHH
Confidence 23444444444556677888999999999998888776544
No 325
>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane
Probab=23.34 E-value=53 Score=17.19 Aligned_cols=29 Identities=17% Similarity=0.023 Sum_probs=18.7
Q ss_pred hhhHHHHHhhccCcchhhhhchhhhhhcc
Q psy6141 115 SLALPVYLGETVQPEVRGTLGLLPTFLGN 143 (144)
Q Consensus 115 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 143 (144)
.++.+..--...|++.|-...++.+..++
T Consensus 31 Wp~~~~vnF~~vP~~~Rv~~~~~v~~~W~ 59 (68)
T PF04117_consen 31 WPPAQIVNFRYVPPHYRVLFVNVVSFFWN 59 (68)
T ss_pred HHHHHHHHhcccChhhhhhhhhhHHHHHH
Confidence 45555555566788888777776665543
No 326
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=23.30 E-value=1.5e+02 Score=16.67 Aligned_cols=41 Identities=17% Similarity=0.320 Sum_probs=22.2
Q ss_pred chhhHhhhchHHHHHHHHHHH-----------hchHHHHHHHHHHhhhhhhh
Q psy6141 73 RRTTILSTGLPFIVSFLLIAL-----------ANGVPMILAGRCVAGFCVGI 113 (144)
Q Consensus 73 ~r~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~g~ 113 (144)
||...+++-+++..+.+.+.. .-+.+.++.--.+.+++.|.
T Consensus 3 Rk~a~~~GN~lMglGmv~Mv~gigysi~~~~~~L~Lp~~~~~gal~~IFiGA 54 (89)
T PF10762_consen 3 RKNAFLLGNVLMGLGMVVMVGGIGYSILSQIPQLGLPQFLAHGALFSIFIGA 54 (89)
T ss_pred chhhHHHhhHHHHHhHHHHHHhHHHHHHHhcccCCCcHHHHhhHHHHHHHHH
Confidence 555556666666655554432 12455666655666666554
No 327
>COG5547 Small integral membrane protein [Function unknown]
Probab=23.11 E-value=1.3e+02 Score=15.62 Aligned_cols=20 Identities=10% Similarity=0.418 Sum_probs=9.1
Q ss_pred hhhHhhhchHHHHHHHHHHH
Q psy6141 74 RTTILSTGLPFIVSFLLIAL 93 (144)
Q Consensus 74 r~~~~~~~~~~~~~~~~~~~ 93 (144)
|..++.+.+...++..+..+
T Consensus 8 kypIIgglvglliAili~t~ 27 (62)
T COG5547 8 KYPIIGGLVGLLIAILILTF 27 (62)
T ss_pred ccchHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 328
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=22.64 E-value=3.3e+02 Score=20.26 Aligned_cols=101 Identities=19% Similarity=0.206 Sum_probs=54.2
Q ss_pred ccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHH-HHHhchHHHHHHHHHHh
Q psy6141 29 IPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLL-IALANGVPMILAGRCVA 107 (144)
Q Consensus 29 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 107 (144)
.|..... .. .++++.....+...+...++.++-+...++. -|.....+.....+.... .....++.....+-++.
T Consensus 25 ~p~iv~~--~~-l~~~~~~~li~at~~~sgi~Tllq~~~~~~~-~~lp~~~G~sfa~i~~~~~~~~~~~~~~~~g~~i~~ 100 (415)
T TIGR00801 25 VPLLVGL--AP-LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQ-IGLPSYLGSSFAFVSPMIAIGSGLGIPAIMGALIAT 100 (415)
T ss_pred HHHHHhc--cc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-eeeeeeecCcHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 4444442 45 7888888888888888899998888776654 223333333322222222 12222344333333444
Q ss_pred hhhhhhhhh----hHHHHHhhccCcchhhh
Q psy6141 108 GFCVGIASL----ALPVYLGETVQPEVRGT 133 (144)
Q Consensus 108 g~~~g~~~~----~~~~~~~~~~~~~~r~~ 133 (144)
|+....... .....+.+.+|+..++.
T Consensus 101 gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~ 130 (415)
T TIGR00801 101 GLVYTLLSLLIKKLGPRWLMKLFPPVVTGP 130 (415)
T ss_pred HHHHHHHHHHHHHhhHHHHHhcCCchhHHH
Confidence 443332222 12234577888887765
No 329
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=22.25 E-value=1.4e+02 Score=15.79 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhh
Q psy6141 97 VPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRG 132 (144)
Q Consensus 97 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~ 132 (144)
+..+.......++..+... ....+++|..+++++|
T Consensus 28 it~F~~n~~~g~i~i~I~l-~l~G~isE~i~~~Kgg 62 (63)
T PF06341_consen 28 ITAFLINQIAGLISIGITL-FLAGLISEFISKQKGG 62 (63)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCC
Confidence 3333333333344444433 3445778888775443
No 330
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=22.15 E-value=3.3e+02 Score=20.03 Aligned_cols=51 Identities=14% Similarity=0.103 Sum_probs=33.7
Q ss_pred hhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhh
Q psy6141 16 MIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESL 71 (144)
Q Consensus 16 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~ 71 (144)
...+..+..+..+.|....+ + .....|.+.+.+.+..++|+-+..++..+-
T Consensus 255 lFE~smy~FVflWtPaL~~~--~---~~~P~GlIFssFM~a~MlGS~lf~~l~s~~ 305 (354)
T PF05631_consen 255 LFEGSMYLFVFLWTPALDPD--D---EELPLGLIFSSFMVAMMLGSSLFSRLLSKS 305 (354)
T ss_pred HHHHHHHHheeeeeceecCC--C---CCCCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44455555555567776431 1 123478999999999999999987666543
No 331
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]
Probab=22.14 E-value=3.6e+02 Score=20.53 Aligned_cols=42 Identities=19% Similarity=0.372 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHHHHhh---------HHHHhhhcchhhHhhhchHHHH
Q psy6141 45 EASWIGSLMPLSALFGGMAG---------GPLIESLGRRTTILSTGLPFIV 86 (144)
Q Consensus 45 ~~~~~~~~~~~~~~i~~~~~---------g~l~d~~g~r~~~~~~~~~~~~ 86 (144)
..+.+..+..+|.++|...- -.+.+++|.||..+.-.+...+
T Consensus 58 tlg~i~~Vi~lGam~GkLle~sGaA~~IA~tii~~~G~kr~~~Al~l~g~i 108 (442)
T COG2610 58 TLGSLALVIGLGAMLGKLLEDSGAAESIADTLIRKFGEKRALLALVLAGLI 108 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 34556666777777776653 3667789999876654444333
No 332
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=22.07 E-value=2.5e+02 Score=18.73 Aligned_cols=16 Identities=6% Similarity=-0.072 Sum_probs=8.8
Q ss_pred HhhhcchhhHhhhchH
Q psy6141 68 IESLGRRTTILSTGLP 83 (144)
Q Consensus 68 ~d~~g~r~~~~~~~~~ 83 (144)
..+.++||+.-.....
T Consensus 158 ~~~~sp~KT~EGsi~~ 173 (259)
T PF01148_consen 158 APKISPKKTWEGSIAG 173 (259)
T ss_pred CCCCCCCCCHHHHhHH
Confidence 3335677876644333
No 333
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=22.00 E-value=1.3e+02 Score=15.52 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=11.2
Q ss_pred HHHHHHhhHHHHhhhcchhhHhhh
Q psy6141 57 ALFGGMAGGPLIESLGRRTTILST 80 (144)
Q Consensus 57 ~~i~~~~~g~l~d~~g~r~~~~~~ 80 (144)
..++...+.++.++++++...+.+
T Consensus 37 ~~~G~~~G~~~~~~~~~~~~~igg 60 (67)
T PF02659_consen 37 PLLGLLLGRRLGRFIGSYAEWIGG 60 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555544333333
No 334
>PF08080 zf-RNPHF: RNPHF zinc finger; InterPro: IPR012996 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc-binding domain (CHHC motif) in RNP H and F. The domain is often associated with IPR000504 from INTERPRO. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WEZ_A 2KG1_A.
Probab=21.87 E-value=30 Score=15.81 Aligned_cols=10 Identities=20% Similarity=0.441 Sum_probs=0.0
Q ss_pred HhhhcchhhH
Q psy6141 68 IESLGRRTTI 77 (144)
Q Consensus 68 ~d~~g~r~~~ 77 (144)
+||+||-...
T Consensus 3 sd~FGRd~~~ 12 (36)
T PF08080_consen 3 SDRFGRDLSY 12 (36)
T ss_dssp ----------
T ss_pred cchhcchhhH
Confidence 5777775443
No 335
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=21.61 E-value=87 Score=14.24 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=14.2
Q ss_pred hhhhhhhhhhhHHHHHhhccCcchhh
Q psy6141 107 AGFCVGIASLALPVYLGETVQPEVRG 132 (144)
Q Consensus 107 ~g~~~g~~~~~~~~~~~~~~~~~~r~ 132 (144)
.|.-..+.+.+.++..-|..+...|.
T Consensus 8 LG~lLAcAFgiinAlwlEh~e~~~~~ 33 (37)
T COG4890 8 LGLLLACAFGIINALWLEHMEDRARK 33 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444455556666666666555444
No 336
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=21.45 E-value=3e+02 Score=19.33 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=21.3
Q ss_pred HHHHHh-hHHHHhhhcchhhHhhhchHHHHHHHHHH
Q psy6141 58 LFGGMA-GGPLIESLGRRTTILSTGLPFIVSFLLIA 92 (144)
Q Consensus 58 ~i~~~~-~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 92 (144)
++.-.. ++.+-++.|+++.+.+..+...++.+...
T Consensus 155 ml~l~~lG~~iE~~~G~~~~l~l~l~s~i~~~~~~~ 190 (276)
T PRK10907 155 LLWWWYLGGAVEKRLGSGKLIVITLISALLSGWVQS 190 (276)
T ss_pred HHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHH
Confidence 334444 45556678998887776666555555443
No 337
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=21.39 E-value=2.5e+02 Score=18.36 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhhHHH
Q psy6141 51 SLMPLSALFGGMAGGPL 67 (144)
Q Consensus 51 ~~~~~~~~i~~~~~g~l 67 (144)
.....+..+|....+.+
T Consensus 53 ~~~i~~F~~G~~~~~~i 69 (209)
T PF06912_consen 53 LLAILSFILGAFLAGLI 69 (209)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555666666666
No 338
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=20.75 E-value=1.8e+02 Score=16.51 Aligned_cols=33 Identities=18% Similarity=-0.027 Sum_probs=17.9
Q ss_pred ccccccC-CCCCCCCcchhHHHHHHHHHHHHHHH
Q psy6141 29 IPSMNQM-GSRVSPTEEEASWIGSLMPLSALFGG 61 (144)
Q Consensus 29 ~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~ 61 (144)
.|.+.++ .+-+..+.+|.........+|...+.
T Consensus 5 iP~~ld~p~~il~~~~De~~~~~~~~~~gi~~~~ 38 (95)
T PF07178_consen 5 IPKYLDDPPRILFWPMDEFIPALILFVIGILSGH 38 (95)
T ss_pred CCCccCCcceeeeecHHHHHHHHHHHHHHHHHhh
Confidence 4555553 12345677777666655555554444
No 339
>PF12173 BacteriocIIc_cy: Bacteriocin class IIc cyclic gassericin A-like; InterPro: IPR020970 This class of bacteriocins was previously described as class V. The members include gassericin A, acidocin B and butyrovibriocin AR10, all of which are hydrophobic cyclical structures []. The N- and C-termini are covalently linked, and the circular molecule is resistant to several proteases and peptidases []. The immunity protein that protects Lactobacillus gasseri from the toxic effects of its bacteriocin, gassericin A, has been identified. It is found to be a small positively-charged hydrophobic peptide of 53 amino acids containing a putative transmembrane segment [] - a structure unlike that of the more common immunity proteins as found in PF08951 from PFAM.
Probab=20.48 E-value=30 Score=19.18 Aligned_cols=37 Identities=11% Similarity=0.042 Sum_probs=21.7
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcch
Q psy6141 38 RVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRR 74 (144)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r 74 (144)
+++++.-+...+.+...++.++...=.=+++||+|-+
T Consensus 8 n~~lnki~~~~i~a~LvV~ll~~~~NIY~Ia~k~GI~ 44 (91)
T PF12173_consen 8 NFNLNKIESFCIWAVLVVALLITTANIYWIADKFGIH 44 (91)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHccCceEEEeccccee
Confidence 5566655555555545555554444455788888854
No 340
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=20.19 E-value=1.7e+02 Score=15.96 Aligned_cols=30 Identities=23% Similarity=0.092 Sum_probs=20.4
Q ss_pred HHhhhcchhhHhhhchHHHHHHHHHHHhch
Q psy6141 67 LIESLGRRTTILSTGLPFIVSFLLIALANG 96 (144)
Q Consensus 67 l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~ 96 (144)
--|+-.|++.+.+...+-..+.++......
T Consensus 10 ~~d~~~R~r~Y~i~M~~Ri~~fvlA~~~~~ 39 (73)
T PF11298_consen 10 SQDQRRRRRRYLIMMGIRIPCFVLAAVVYR 39 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346667888888877777776666665543
Done!