Query psy6141
Match_columns 144
No_of_seqs 175 out of 1582
Neff 10.8
Searched_HMMs 29240
Date Fri Aug 16 18:44:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.8 3.6E-21 1.2E-25 138.2 9.5 136 6-141 12-170 (491)
2 3o7q_A L-fucose-proton symport 99.8 1E-20 3.5E-25 134.0 9.8 137 3-142 23-162 (438)
3 1pw4_A Glycerol-3-phosphate tr 99.8 1.4E-19 4.8E-24 128.5 9.8 135 4-142 26-164 (451)
4 2gfp_A EMRD, multidrug resista 99.8 4.8E-19 1.6E-23 123.4 7.8 131 9-142 3-133 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.7 1.1E-17 3.9E-22 120.1 7.9 135 7-141 14-154 (491)
6 2xut_A Proton/peptide symporte 99.7 8E-17 2.7E-21 116.6 8.1 126 10-137 16-149 (524)
7 1pw4_A Glycerol-3-phosphate tr 99.4 1.5E-12 5.3E-17 92.2 9.8 133 8-142 254-391 (451)
8 2cfq_A Lactose permease; trans 99.3 1.7E-12 5.9E-17 91.9 5.3 125 11-137 12-142 (417)
9 3o7q_A L-fucose-proton symport 99.3 2.1E-11 7.3E-16 86.1 9.9 123 13-139 265-388 (438)
10 4aps_A DI-OR tripeptide H+ sym 99.2 1.2E-11 3.9E-16 88.9 5.5 127 14-142 291-431 (491)
11 2cfq_A Lactose permease; trans 99.2 2.6E-11 8.8E-16 85.8 6.5 96 43-138 258-353 (417)
12 4gc0_A D-xylose-proton symport 99.2 1.7E-10 6E-15 82.7 9.8 115 24-141 295-414 (491)
13 2gfp_A EMRD, multidrug resista 99.0 1.2E-10 4.3E-15 80.9 1.6 129 9-142 202-335 (375)
14 2xut_A Proton/peptide symporte 98.5 7.1E-08 2.4E-12 69.8 4.0 98 45-142 336-450 (524)
15 2g9p_A Antimicrobial peptide l 76.7 1.6 5.3E-05 17.2 1.4 14 63-76 2-15 (26)
16 1cmk_I CAMP-dependent protein 38.1 4.9 0.00017 16.4 -0.4 10 68-77 9-18 (26)
17 4dve_A Biotin transporter BIOY 37.5 77 0.0026 20.0 5.6 24 51-74 100-123 (198)
18 2jpj_A Bacteriocin lactococcin 24.5 24 0.00082 15.5 0.6 10 66-75 28-37 (39)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.85 E-value=3.6e-21 Score=138.23 Aligned_cols=136 Identities=26% Similarity=0.423 Sum_probs=114.6
Q ss_pred HHHHHHHHHHhhhhhhhhcccccccccccCC---CC--CCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhh
Q psy6141 6 LASLTVSLGSMIVGFASAYTSPAIPSMNQMG---SR--VSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILST 80 (144)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~ 80 (144)
...+..+++.+.++|+...++..+|.+.+.. ++ .+.++.+.+++.+.+.+|.+++++++|+++||+|||++++++
T Consensus 12 ~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~ 91 (491)
T 4gc0_A 12 SITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIA 91 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3445556778899999998888887765520 01 122345678899999999999999999999999999999999
Q ss_pred chHHHHHHHHHH------------------HhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 81 GLPFIVSFLLIA------------------LANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 81 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
.++..++.+.++ .++|++.++++|+++|++.|...+..+.+++|..|+++|++..++.+..
T Consensus 92 ~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~ 170 (491)
T 4gc0_A 92 AVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFA 170 (491)
T ss_dssp HHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhh
Confidence 999999999887 4789999999999999999999999999999999999999988877654
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.84 E-value=1e-20 Score=134.00 Aligned_cols=137 Identities=14% Similarity=0.103 Sum_probs=124.9
Q ss_pred chhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhch
Q psy6141 3 SAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGL 82 (144)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~ 82 (144)
++++....++...+..++......+..|.+.+ +++.++++.+++.+...++..++.++.|+++||+|||+.++.+.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~ 99 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQ---AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLF 99 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHH
Confidence 44566677777788888888888888999888 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH---HHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 83 PFIVSFLLI---ALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 83 ~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
+..++.+.. ..+++++.+++.|++.|++.+...+....+++|++|+|+|+++.++.+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 162 (438)
T 3o7q_A 100 LYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFN 162 (438)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHH
Confidence 999999988 788999999999999999999999999999999999999999888876653
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.81 E-value=1.4e-19 Score=128.50 Aligned_cols=135 Identities=10% Similarity=0.058 Sum_probs=123.2
Q ss_pred hhHHHHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchH
Q psy6141 4 AVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLP 83 (144)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~ 83 (144)
++..........+..++......+..|.+.+ ++ .++++.+++.+...++..++.+++|+++||+|||+.++.+.++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVE---QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTS---ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 3556667777778888888888888999888 78 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH----hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 84 FIVSFLLIAL----ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 84 ~~~~~~~~~~----~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
..++.+...+ +++++.+++.|++.|++.+...+...++++|++|+++|+++.++.+...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 164 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAH 164 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHH
Confidence 9999999999 9999999999999999999999999999999999999999999876543
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.78 E-value=4.8e-19 Score=123.42 Aligned_cols=131 Identities=17% Similarity=0.196 Sum_probs=119.1
Q ss_pred HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHH
Q psy6141 9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSF 88 (144)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 88 (144)
..++...+..++......+..|.+.+ +++.++++.+++.+...++..++.++.|+++||+|||+.+..+.....++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 79 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMAR---DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 34556667777777888888998887 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 89 LLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
.....+++++.+++.|++.|++.+...+....++.|++|+|+|+++.++.+...
T Consensus 80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (375)
T 2gfp_A 80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGI 133 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988876543
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.72 E-value=1.1e-17 Score=120.12 Aligned_cols=135 Identities=14% Similarity=0.157 Sum_probs=112.1
Q ss_pred HHHHHHHHHhhhhhhhhcccccccccccC---CCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhh-hcchhhHhhhch
Q psy6141 7 ASLTVSLGSMIVGFASAYTSPAIPSMNQM---GSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES-LGRRTTILSTGL 82 (144)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~g~r~~~~~~~~ 82 (144)
..+......+...+......+.+|.+.++ .++++.++++.+++.+...++..+++++.|+++|| +|||+.+..+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~ 93 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGV 93 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 34445555555555555555566666552 12389999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcch--hhhhchhhhhh
Q psy6141 83 PFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEV--RGTLGLLPTFL 141 (144)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~ 141 (144)
+..++.+.+.++++++.+.+.|++.|++.+...+....+++|++|+++ |+.+.++.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 154 (491)
T 4aps_A 94 LIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFG 154 (491)
T ss_dssp HHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHH
Confidence 999999999999999999999999999999999999999999999988 66666655443
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.68 E-value=8e-17 Score=116.62 Aligned_cols=126 Identities=13% Similarity=0.122 Sum_probs=107.3
Q ss_pred HHHHHHhhhhhhhhcccccccccccCCCCCC------CCcchhHHHHHHHHHHHHHHHHhhHHHHhhh-cchhhHhhhch
Q psy6141 10 TVSLGSMIVGFASAYTSPAIPSMNQMGSRVS------PTEEEASWIGSLMPLSALFGGMAGGPLIESL-GRRTTILSTGL 82 (144)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-g~r~~~~~~~~ 82 (144)
.+.+..+...+......+.+|.+.++ +++ .++.+.+++.+...++..++.++.|+++||+ |||+.+..+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~ 93 (524)
T 2xut_A 16 YIIASEACERFSFYGMRNILTPFLMT--ALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSL 93 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 34445555555555555666666542 677 8999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHhc-hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchh
Q psy6141 83 PFIVSFLLIALAN-GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLL 137 (144)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~ 137 (144)
+..++.+...+++ +++.+++.|++.|++.+...+...++++|.+|+++|++..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 149 (524)
T 2xut_A 94 IYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA 149 (524)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHH
Confidence 9999999999988 999999999999999999999999999999999999876555
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.41 E-value=1.5e-12 Score=92.24 Aligned_cols=133 Identities=12% Similarity=0.114 Sum_probs=105.7
Q ss_pred HHHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhh--cchhhHhhhchHHH
Q psy6141 8 SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESL--GRRTTILSTGLPFI 85 (144)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--g~r~~~~~~~~~~~ 85 (144)
.+...+..+...........+.|.+.++ .++.++.+.++..+...++.+++.++.|++.||+ |||+.+..+.....
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 254 LWYIAIANVFVYLLRYGILDWSPTYLKE--VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTT--BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 3444555555555556666778888872 4899999999999999999999999999999999 99998887766665
Q ss_pred -HHHHHHHHh--chHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 86 -VSFLLIALA--NGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 86 -~~~~~~~~~--~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
++.....+. .+.+...+..++.|++.+...+....+..|.+|+++|+++.++.+...
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 391 (451)
T 1pw4_A 332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG 391 (451)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHH
Confidence 555555444 367777778888899888888888899999999999999999887653
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.31 E-value=1.7e-12 Score=91.86 Aligned_cols=125 Identities=18% Similarity=0.048 Sum_probs=78.5
Q ss_pred HHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHH
Q psy6141 11 VSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLL 90 (144)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 90 (144)
.....+..........+.+|.+.++ ++|.++++.+++.+...++..++++++|+++||+|||+.++.+.....+....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~~--~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~ 89 (417)
T 2cfq_A 12 FGLFFFFYFFIMGAYFPFFPIWLHD--INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAP 89 (417)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHT--TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 3333444444455667788888762 68999999999999999999999999999999999999998776655442211
Q ss_pred H---HHhchH-HHHHHHHHHhhhhhhhhhhhHHHHHhhccCc--chhhhhchh
Q psy6141 91 I---ALANGV-PMILAGRCVAGFCVGIASLALPVYLGETVQP--EVRGTLGLL 137 (144)
Q Consensus 91 ~---~~~~~~-~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~--~~r~~~~~~ 137 (144)
. .+.+.. ......+.+.+++.+...+.......++.++ ++|+...+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 142 (417)
T 2cfq_A 90 FFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGR 142 (417)
T ss_dssp HHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHH
Confidence 1 122211 1133445565655554444333344444433 334443333
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.29 E-value=2.1e-11 Score=86.15 Aligned_cols=123 Identities=12% Similarity=-0.017 Sum_probs=97.3
Q ss_pred HHHhhhhhhhhccccccccc-ccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHH
Q psy6141 13 LGSMIVGFASAYTSPAIPSM-NQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLI 91 (144)
Q Consensus 13 ~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~ 91 (144)
+..+...........+.|.+ .++ .++.++.+.+...+...++..++.++.|++.||+|||+.+..+.+...++.+..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~ 342 (438)
T 3o7q_A 265 LAQFCYVGAQTACWSYLIRYAVEE--IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLIS 342 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc--cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 33344444445555667777 662 568999999999999999999999999999999999999999988888888877
Q ss_pred HHhchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhh
Q psy6141 92 ALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPT 139 (144)
Q Consensus 92 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~ 139 (144)
.+.++.+.... ..+.|++.+...+....+..|.+|++ |+.+.++..
T Consensus 343 ~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 388 (438)
T 3o7q_A 343 AFAGGHVGLIA-LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV 388 (438)
T ss_dssp HHCCHHHHHHH-HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH
T ss_pred HHcCCcHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH
Confidence 77777665444 47888888888899999999999976 777666544
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.22 E-value=1.2e-11 Score=88.90 Aligned_cols=127 Identities=13% Similarity=0.017 Sum_probs=91.7
Q ss_pred HHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHh-----hhchHHHHHH
Q psy6141 14 GSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTIL-----STGLPFIVSF 88 (144)
Q Consensus 14 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~-----~~~~~~~~~~ 88 (144)
................|.+.++ ..+.+..+.+.......++..++.++.+++.||+|||+... .+.++..++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~ 368 (491)
T 4aps_A 291 AAVLFWAIEEQGSVVLATFAAE--RVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSF 368 (491)
T ss_dssp HHHHHHHHHGGGGTHHHHHHHH--SCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHH--HhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHH
Confidence 3333334444455556666652 45555567778888889999999999999999999987655 5555655555
Q ss_pred HHHHHhc---------hHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 89 LLIALAN---------GVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 89 ~~~~~~~---------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
....... +.+...+..++.|++.+...+....+..|.+|+++|+++.++.+...
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 431 (491)
T 4aps_A 369 LLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSS 431 (491)
T ss_dssp TTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHH
T ss_pred HHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 5544432 56677777888999998888899999999999999999999876543
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.20 E-value=2.6e-11 Score=85.83 Aligned_cols=96 Identities=13% Similarity=0.112 Sum_probs=77.7
Q ss_pred cchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHhchHHHHHHHHHHhhhhhhhhhhhHHHHH
Q psy6141 43 EEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYL 122 (144)
Q Consensus 43 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 122 (144)
..+.+...+...++..++.++.+++.||+|||+.+..+....++......+.++.+.+.+...+.+++.+...+....+.
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557777778888889999999999999999998888777777766666667777777777777777766667778899
Q ss_pred hhccCcchhhhhchhh
Q psy6141 123 GETVQPEVRGTLGLLP 138 (144)
Q Consensus 123 ~~~~~~~~r~~~~~~~ 138 (144)
+|.+|++.|+++.++.
T Consensus 338 ~~~~p~~~~g~~~g~~ 353 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVC 353 (417)
T ss_dssp HHHSCHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHH
Confidence 9999999999987763
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.18 E-value=1.7e-10 Score=82.71 Aligned_cols=115 Identities=11% Similarity=0.030 Sum_probs=79.2
Q ss_pred cccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchHHHHHHHHHHHh----chHHH
Q psy6141 24 YTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA----NGVPM 99 (144)
Q Consensus 24 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~----~~~~~ 99 (144)
....+.|.+.+ +.+.+............+...++.++.+++.||+|||+.++.+.....++.+..... .+.+.
T Consensus 295 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 371 (491)
T 4gc0_A 295 VVLYYAPEVFK---TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIV 371 (491)
T ss_dssp HHHHHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHhcchHHHH---hcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHH
Confidence 33444566655 566666677777778888999999999999999999999998888777776655432 11222
Q ss_pred HHHHH-HHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhh
Q psy6141 100 ILAGR-CVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFL 141 (144)
Q Consensus 100 ~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 141 (144)
..+.. +..........+..+.+.+|.+|++.|+++.++.+..
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~ 414 (491)
T 4gc0_A 372 ALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAA 414 (491)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHH
Confidence 22222 2222222233467788999999999999999887654
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.97 E-value=1.2e-10 Score=80.86 Aligned_cols=129 Identities=15% Similarity=-0.024 Sum_probs=91.6
Q ss_pred HHHHHHHhhhhhhhhcccccccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHhhHHHHhhhcchhhHhhhchH-HHHH
Q psy6141 9 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLP-FIVS 87 (144)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~-~~~~ 87 (144)
....+..+.............|.+.++ +.+.++.+.+...+...++..++.++.+++.||.+++.. .+... ...+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~--~~~~~~~~~~ 277 (375)
T 2gfp_A 202 NCYLLMLIGGLAGIAAFEACSGVLMGA--VLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAG 277 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCSSHH--HHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHH--HHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 333444444444555556677877761 478888899999999999999999999999999987322 22222 2222
Q ss_pred HH--HHHH--hchHHHHHHHHHHhhhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 88 FL--LIAL--ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 88 ~~--~~~~--~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
.. .... .++.+.+.+...+.|++.+...+....+..|..| ++|+++.++.+...
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~ 335 (375)
T 2gfp_A 278 LLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQ 335 (375)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHH
Confidence 11 1122 2366667777888999999999999999999998 89999999877543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.51 E-value=7.1e-08 Score=69.79 Aligned_cols=98 Identities=12% Similarity=0.053 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHH----hhhcch----hhHhhhchHHHHHHHHHHHh---------chHHHHHHHHHHh
Q psy6141 45 EASWIGSLMPLSALFGGMAGGPLI----ESLGRR----TTILSTGLPFIVSFLLIALA---------NGVPMILAGRCVA 107 (144)
Q Consensus 45 ~~~~~~~~~~~~~~i~~~~~g~l~----d~~g~r----~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 107 (144)
..+.......++..+..++.+++. ||.|+| +.+..+.++..++.+..... .+.+.+.+..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 456666777777777777777764 555432 44556666666666555442 3566677788899
Q ss_pred hhhhhhhhhhHHHHHhhccCcchhhhhchhhhhhc
Q psy6141 108 GFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLG 142 (144)
Q Consensus 108 g~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 142 (144)
|++.+...+....+..|..|+++|+++.++.+...
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 450 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSV 450 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999887654
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=76.71 E-value=1.6 Score=17.20 Aligned_cols=14 Identities=36% Similarity=0.593 Sum_probs=10.9
Q ss_pred hhHHHHhhhcchhh
Q psy6141 63 AGGPLIESLGRRTT 76 (144)
Q Consensus 63 ~~g~l~d~~g~r~~ 76 (144)
++|.+..++|||..
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46788999998754
No 16
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=38.10 E-value=4.9 Score=16.41 Aligned_cols=10 Identities=40% Similarity=0.567 Sum_probs=7.2
Q ss_pred HhhhcchhhH
Q psy6141 68 IESLGRRTTI 77 (144)
Q Consensus 68 ~d~~g~r~~~ 77 (144)
+||-|||..+
T Consensus 9 ~~RtGRRNAl 18 (26)
T 1cmk_I 9 SGRTGRRNAI 18 (26)
T ss_pred cCcccccccc
Confidence 5788888754
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=37.55 E-value=77 Score=20.05 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhHHHHhhhcch
Q psy6141 51 SLMPLSALFGGMAGGPLIESLGRR 74 (144)
Q Consensus 51 ~~~~~~~~i~~~~~g~l~d~~g~r 74 (144)
..+.+|.+++..+.|++.||..++
T Consensus 100 gGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 100 GGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHHHHHHHcccc
Confidence 346677788888999999987543
No 18
>2jpj_A Bacteriocin lactococcin-G subunit alpha; peptide, anti-microbial, membrane bound, antimicrobial protein; NMR {Lactococcus lactis} PDB: 2jpl_A
Probab=24.47 E-value=24 Score=15.46 Aligned_cols=10 Identities=10% Similarity=0.248 Sum_probs=6.0
Q ss_pred HHHhhhcchh
Q psy6141 66 PLIESLGRRT 75 (144)
Q Consensus 66 ~l~d~~g~r~ 75 (144)
--+||+.||+
T Consensus 28 nqa~rinrkk 37 (39)
T 2jpj_A 28 NQASRINRKK 37 (39)
T ss_dssp HHHHHHHGGG
T ss_pred hHHHHhhhhc
Confidence 3456677765
Done!