RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6141
         (144 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 36.2 bits (82), Expect = 8e-04
 Identities = 14/128 (10%), Positives = 40/128 (31%), Gaps = 8/128 (6%)

Query: 9   LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLI 68
           L +  G           + A+P + + G     +  +  +  S + ++  F     G + 
Sbjct: 28  LGIFFGYAAYYLVRKNFALAMPYLVEQGF----SRGDLGFALSGISIAYGFSKFIMGSVS 83

Query: 69  ESLGRRTTILSTGLPFIVSFLLI----ALANGVPMILAGRCVAGFCVGIASLALPVYLGE 124
           +    R  + +  +      L +       + + ++     + G+  G+        +  
Sbjct: 84  DRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVH 143

Query: 125 TVQPEVRG 132
               + RG
Sbjct: 144 WWSQKERG 151



 Score = 27.0 bits (58), Expect = 0.92
 Identities = 16/140 (11%), Positives = 42/140 (30%)

Query: 5   VLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAG 64
           +      ++   ++ +     SP      +  +    +     +  + +P + L G M+ 
Sbjct: 251 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD 310

Query: 65  GPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGE 124
                + G       T +        +  A    + +    V GF +    + + ++  E
Sbjct: 311 KVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALE 370

Query: 125 TVQPEVRGTLGLLPTFLGNI 144
               +  GT        G +
Sbjct: 371 LAPKKAAGTAAGFTGLFGYL 390


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 30.9 bits (68), Expect = 0.047
 Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 2/105 (1%)

Query: 11  VSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEASWIGSLMPLSALFGGMAGGPLIES 70
             L      F      P  P    +      ++ +   I + + L +L      G L + 
Sbjct: 12  FGLFFFFYFFIMGAYFPFFPIW--LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK 69

Query: 71  LGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIAS 115
           LG R  +L      +V F    +    P++     V     GI  
Sbjct: 70  LGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYL 114


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.399 

Gapped
Lambda     K      H
   0.267   0.0504    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 472,974
Number of extensions: 18899
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 12
Length of query: 144
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,350,386
Effective search space: 90475862
Effective search space used: 90475862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.2 bits)