Query psy6142
Match_columns 483
No_of_seqs 133 out of 1985
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 18:45:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6142.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6142hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 4.6E-49 1.6E-53 403.9 35.2 408 12-466 36-482 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 5.6E-28 1.9E-32 244.1 21.2 362 22-445 56-432 (451)
3 3o7q_A L-fucose-proton symport 100.0 3.5E-26 1.2E-30 230.1 31.6 334 22-439 54-425 (438)
4 4aps_A DI-OR tripeptide H+ sym 99.9 4.5E-25 1.5E-29 225.6 30.3 392 22-453 47-478 (491)
5 2gfp_A EMRD, multidrug resista 99.9 1E-22 3.5E-27 200.6 13.8 327 22-430 28-360 (375)
6 2xut_A Proton/peptide symporte 99.9 6.2E-21 2.1E-25 196.5 22.5 138 24-161 49-195 (524)
7 2cfq_A Lactose permease; trans 99.9 2.2E-21 7.6E-26 194.1 13.5 359 23-454 37-407 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.0 4.4E-09 1.5E-13 105.3 16.6 148 296-452 63-212 (451)
9 2cfq_A Lactose permease; trans 98.8 3.2E-09 1.1E-13 105.7 6.7 139 31-169 261-405 (417)
10 3o7q_A L-fucose-proton symport 98.8 7.8E-08 2.7E-12 95.8 15.1 146 297-452 63-236 (438)
11 2gfp_A EMRD, multidrug resista 98.7 1.3E-08 4.6E-13 99.3 6.3 144 297-453 37-181 (375)
12 4gc0_A D-xylose-proton symport 98.7 1.2E-07 4E-12 96.1 12.8 139 28-167 311-466 (491)
13 4aps_A DI-OR tripeptide H+ sym 98.6 2.9E-07 1E-11 93.2 14.7 137 297-446 56-196 (491)
14 2xut_A Proton/peptide symporte 98.6 8.5E-07 2.9E-11 90.6 15.5 137 296-444 55-196 (524)
15 2g9p_A Antimicrobial peptide l 42.5 8.1 0.00028 19.8 0.7 14 48-61 2-15 (26)
16 4dve_A Biotin transporter BIOY 24.0 81 0.0028 26.7 4.4 22 38-59 102-123 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=4.6e-49 Score=403.87 Aligned_cols=408 Identities=28% Similarity=0.480 Sum_probs=306.8
Q ss_pred cccccccCCCCC--cccccchhhHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHhhHHHHHHHHHHH------------
Q psy6142 12 SRIDANYNEYDD--VKINYIQASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIA------------ 77 (483)
Q Consensus 12 ~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~g~~lG~~~~G~l~D~~GRr~~l~~~~~l~~~~~~l~~------------ 77 (483)
|.++.+|+..++ .+.+..+.+|+.+++.+|.++|++++|+++||+|||++++++.+++.+++++++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~ 115 (491)
T 4gc0_A 36 ESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPD 115 (491)
T ss_dssp HHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSS
T ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcch
Confidence 445555543333 234556788999999999999999999999999999999999999999999999
Q ss_pred ------hhccHHHHHHHHHHhhhcccccccchhhhhcccCCCCccchhchHhHHHHHHHHHHHHHhhhh-----------
Q psy6142 78 ------LANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGNIGILTCFIAGTF----------- 140 (483)
Q Consensus 78 ------~a~~~~~l~~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~g~~~~~~~g~~----------- 140 (483)
+++|+++++++|+++|++.|+..+..++|++|..|+++||+..+..+.+...|.+.+...+..
T Consensus 116 ~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 195 (491)
T 4gc0_A 116 NTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLN 195 (491)
T ss_dssp SSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTT
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcccccccccc
Confidence 488999999999999999999999999999999999999999999999999998877766543
Q ss_pred -hhhHHHHHHhhHHHHHHHHHHhcCcCChhhhhhcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHhhccccccccCccch
Q psy6142 141 -LNWYQLAFFGACIPVPFLICMFLIPETPRWYIGRNKQKQARKALQWLRGKDADISREFAEIEKMNNEGNAAEDENSTGC 219 (483)
Q Consensus 141 -~~w~~~~~~~~~~~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (483)
..||..+.....+.++.++..+++||||||+..|++.|++++.+++.++.+...++..+..+...++ +....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~- 268 (491)
T 4gc0_A 196 TDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHG------RKTGG- 268 (491)
T ss_dssp TTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHTT-
T ss_pred chhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhh------hhhhh-
Confidence 2356666666666677777788899999999999999999999987765432222111111111000 00001
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHhhhhHHHHHhhhhccccccccccccccCCCcccccccCCCCCchhhhhhC-CCCchh
Q psy6142 220 SEVFKAMYMRPLLISIGLMFFQQMSGINAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEDAG-STINEN 298 (483)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~ 298 (483)
.......++.........+++..+.+.+........ +..+ ...+..
T Consensus 269 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~ 315 (491)
T 4gc0_A 269 --RLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVF-------------------------------KTLGASTDIAL 315 (491)
T ss_dssp --HHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHH-------------------------------HHSSCCHHHHH
T ss_pred --HHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHH-------------------------------HhcCCCccchh
Confidence 111123455666677777788877766654221110 1111 111234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHhHHHHHHHHHHHHHHhhccCCCCccccchHHHHHHHHHHHHHhcccc
Q psy6142 299 YCTIIVGVVNLLSVLIATALIDRLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGWLPLLSFVVYVIGFSIGFG 378 (483)
Q Consensus 299 ~~~~~~~~~~~~~~~i~~~lvdr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 378 (483)
....+.+++.+++++++++++||+|||+.++.+...+.++++.++....... ..+...+...++..+++.+.+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 388 (491)
T 4gc0_A 316 LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA-------PGIVALLSMLFYVAAFAMSWG 388 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhccc-------chHHHHHHHHHHHHHHHhHHH
Confidence 5567788999999999999999999999999888877777666554443221 234455556666777888888
Q ss_pred chhhhhhcccCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH------HhCcchhHHHHHHHHHHHHHHhhhhcccCCC
Q psy6142 379 SIPWLMMGEILPAKIRGSAASLATAFNWTCTFIVTKTFNDLTA------LLGTHGAFWLFGVVCLVGLFFVIIFVPETQG 452 (483)
Q Consensus 379 ~~~~~~~~Ei~P~~~R~~~~s~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~f~i~~~~~~i~~i~~~~~lpet~~ 452 (483)
++++.+.+|++|+++|+++.|++..++++++++.+..++.+.+ ..+...+|++++++++++.+++++++||||+
T Consensus 389 ~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 389 PVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 9999999999999999999999999999999998887765432 2355667899999999998888899999999
Q ss_pred CCHHHHHHHhcCCC
Q psy6142 453 KSLEDIERNLTGGG 466 (483)
Q Consensus 453 ~~l~ei~~~~~~~~ 466 (483)
|++||+|+.++++.
T Consensus 469 ~tLeei~~~f~~~~ 482 (491)
T 4gc0_A 469 KTLEELEALWEPET 482 (491)
T ss_dssp CCHHHHGGGTC---
T ss_pred CCHHHHHHHhCCCC
Confidence 99999999998754
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.96 E-value=5.6e-28 Score=244.11 Aligned_cols=362 Identities=12% Similarity=0.129 Sum_probs=234.4
Q ss_pred CCcccccchhhHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHhhHHHHHHHHHHHh----hccHHHHHHHHHHhhhccc
Q psy6142 22 DDVKINYIQASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIAL----ANGVPMILAGRCVAGFCVG 97 (483)
Q Consensus 22 ~~~~~~~~~~~~~~s~~~~g~~lG~~~~G~l~D~~GRr~~l~~~~~l~~~~~~l~~~----a~~~~~l~~~R~l~G~~~g 97 (483)
+|+ .+..+.+++.+++.++..++.+++|+++||+|||++++++.++..++.++.++ ++|++.++++|+++|++.|
T Consensus 56 ~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~ 134 (451)
T 1pw4_A 56 EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQG 134 (451)
T ss_dssp SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHH
T ss_pred HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhh
Confidence 455 78889999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred ccccchhhhhcccCCCCccchhchHhHHHHHHHHHHHHHhhh----hhh-hHHHHHHhhHHHHHH-HHHHhcCcCChhhh
Q psy6142 98 IASLALPVYLGETVQPEVRGTLGLLPTFLGNIGILTCFIAGT----FLN-WYQLAFFGACIPVPF-LICMFLIPETPRWY 171 (483)
Q Consensus 98 ~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~g~~~~~~~g~----~~~-w~~~~~~~~~~~~~~-~~~~~~~pESp~~l 171 (483)
...+...+++.|..|+++|++..++.+....+|.++++.++. ..+ ||..+++...+.++. ++..+++||+|++.
T Consensus 135 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (451)
T 1pw4_A 135 MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC 214 (451)
T ss_dssp HTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT
T ss_pred hccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhc
Confidence 999999999999999999999999988888888766655543 245 988877766655443 44557789998764
Q ss_pred hhcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHhhccccccccCccchhhhhhhchhhHHHHHHHHHHHHHhhhhHHHHH
Q psy6142 172 IGRNKQKQARKALQWLRGKDADISREFAEIEKMNNEGNAAEDENSTGCSEVFKAMYMRPLLISIGLMFFQQMSGINAVLA 251 (483)
Q Consensus 172 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (483)
..+.+.++. .+..++ .+ ++.++.....+...++.++++. ........++... .......
T Consensus 215 ~~~~~~~~~-----------~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~ 273 (451)
T 1pw4_A 215 GLPPIEEYK-----------NDYPDD---YN---EKAEQELTAKQIFMQYVLPNKL---LWYIAIANVFVYL-LRYGILD 273 (451)
T ss_dssp CCCSCTTTC-----------CC-------------------CCTHHHHHHTSSCHH---HHHHHHHHHHHHH-HHHHHHH
T ss_pred CCCChhhhc-----------cccccc---ch---hhhhcccccccchHHHHHcCHH---HHHHHHHHHHHHH-HHHHHHH
Confidence 322211100 000000 00 0000000000000122333222 2222222221111 1111111
Q ss_pred hhhhccccccccccccccCCCcccccccCCCCCchhhhhhCCCCchhHHHHHHHHHHHHHHHHHHHhhhcc--cchHHHH
Q psy6142 252 SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEDAGSTINENYCTIIVGVVNLLSVLIATALIDRL--GRKILLY 329 (483)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lvdr~--GRr~~l~ 329 (483)
. +|.+.+...+. +..+..+.....+++.+++.++.+++.||+ |||+.+.
T Consensus 274 ~--------------------~~~~~~~~~g~---------~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~ 324 (451)
T 1pw4_A 274 W--------------------SPTYLKEVKHF---------ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 324 (451)
T ss_dssp H--------------------HHHHBTTBSCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred H--------------------HHHHHHHhcCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHH
Confidence 0 01111000000 111234566777888999999999999999 9999887
Q ss_pred HHhHHHH-HHHHHHHHHHhhccCCCCccccchHHHHHHHHHHHHHhccc-cchhhhhhcccCCccchhhhhHHHHHHHHH
Q psy6142 330 ISSTAMI-LTLATLGTFFYFKSTGSDVSELGWLPLLSFVVYVIGFSIGF-GSIPWLMMGEILPAKIRGSAASLATAFNWT 407 (483)
Q Consensus 330 ~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~~~~~~~Ei~P~~~R~~~~s~~~~~~~~ 407 (483)
.+..+.. ++... ..... ....+...... +..+++.+. .+....+..|.+|++.|+++.++.+.+..+
T Consensus 325 ~~~~~~~~~~~~~-----~~~~~----~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 393 (451)
T 1pw4_A 325 VFFMTLVTIATIV-----YWMNP----AGNPTVDMICM--IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL 393 (451)
T ss_dssp HHHHHHHHHHHHH-----TTSCC----TTCHHHHHHHH--HHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHHhc----ccCHHHHHHHH--HHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHH
Confidence 6654433 22211 11111 11122222222 233333332 234456888999999999999999999999
Q ss_pred -HHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHhhh
Q psy6142 408 -CTFIVTKTFNDLTALLGTHGAFWLFGVVCLVGLFFVII 445 (483)
Q Consensus 408 -~~~~~~~~~~~~~~~~g~~~~f~i~~~~~~i~~i~~~~ 445 (483)
+..+.+...+.+.+..|+..+|++.+++++++.++.++
T Consensus 394 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 394 GGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888888888888888887777655443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.95 E-value=3.5e-26 Score=230.10 Aligned_cols=334 Identities=14% Similarity=0.032 Sum_probs=223.0
Q ss_pred CCcccccchhhHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHhhHHHHHHHHHH---HhhccHHHHHHHHHHhhhcccc
Q psy6142 22 DDVKINYIQASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLI---ALANGVPMILAGRCVAGFCVGI 98 (483)
Q Consensus 22 ~~~~~~~~~~~~~~s~~~~g~~lG~~~~G~l~D~~GRr~~l~~~~~l~~~~~~l~---~~a~~~~~l~~~R~l~G~~~g~ 98 (483)
++++.+..+.+++.+++.++..++.+++|+++||+|||++++++.+++.++.++. +++++++.++++|+++|++.|.
T Consensus 54 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~ 133 (438)
T 3o7q_A 54 QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGC 133 (438)
T ss_dssp HHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHH
Confidence 3567889999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred cccchhhhhcccCCCCccchhchHhHHHHHHHHHHHHHhhhhhh------------------------------hHHHHH
Q psy6142 99 ASLALPVYLGETVQPEVRGTLGLLPTFLGNIGILTCFIAGTFLN------------------------------WYQLAF 148 (483)
Q Consensus 99 ~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~g~~~~~~~g~~~~------------------------------w~~~~~ 148 (483)
..+....++.|..|+++|++..+..+....+|..+++.++.... ||+.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 213 (438)
T 3o7q_A 134 LETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYM 213 (438)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHH
Confidence 99999999999999999999988999999988877776655433 887776
Q ss_pred HhhHHHHHHHHHH--hcCcCChhhhhhcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHhhccccccccCccchhhhhhhc
Q psy6142 149 FGACIPVPFLICM--FLIPETPRWYIGRNKQKQARKALQWLRGKDADISREFAEIEKMNNEGNAAEDENSTGCSEVFKAM 226 (483)
Q Consensus 149 ~~~~~~~~~~~~~--~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (483)
+...+.++..+.. ...||+++....+.+ +++.....++.++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~ 258 (438)
T 3o7q_A 214 IIVAIVLLVALLIMLTKFPALQSDNHSDAK-----------------------------------QGSFSASLSRLARIR 258 (438)
T ss_dssp HHHHHHHHHHHHHHHCCCCCCTTTCCCCSS-----------------------------------TTSHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHcCCccccccccccc-----------------------------------ccchhhhHHHHHhCh
Confidence 5444443333322 235776532100000 000011223445544
Q ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHhhhhccccccccccccccCCCcccc-cccCCCCCchhhhhhC-CCCchhHHHHHH
Q psy6142 227 YMRPLLISIGLMFFQQMSGINAVLASLTVSLGSMIVGFASAYTSPAIPSM-NQMGSRVSPTEEEDAG-STINENYCTIIV 304 (483)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 304 (483)
..+.......+...... ...... |.+ . .+..+ +..+..+.....
T Consensus 259 ~~~~~~~~~~~~~~~~~-~~~~~~-----------------------~~~~~----------~~~~g~~~~~~~~~~~~~ 304 (438)
T 3o7q_A 259 HWRWAVLAQFCYVGAQT-ACWSYL-----------------------IRYAV----------EEIPGMTAGFAANYLTGT 304 (438)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHH-----------------------HHHHH----------HHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHH-----------------------HHHhh----------hccCCcchhHHHHHHHHH
Confidence 43333332222221110 000000 000 0 00001 111234556667
Q ss_pred HHHHHHHHHHHHHhhhcccchHHHHHHhHHHHHHHHHHHHHHhhccCCCCccccchHHHHHHHHHHHHHhccccchhhhh
Q psy6142 305 GVVNLLSVLIATALIDRLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGWLPLLSFVVYVIGFSIGFGSIPWLM 384 (483)
Q Consensus 305 ~~~~~~~~~i~~~lvdr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 384 (483)
.++.+++.++.+++.||+|||+.+..+.+...++...+.. .. . ....+...+..++.+.. .+..+.+
T Consensus 305 ~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~----~~-------~-~~~~~~~~~~g~~~~~~-~~~~~~~ 371 (438)
T 3o7q_A 305 MVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF----AG-------G-HVGLIALTLCSAFMSIQ-YPTIFSL 371 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH----CC-------H-HHHHHHHHHHHHHHTTH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH----cC-------C-cHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 8888999999999999999999988776655444332211 11 0 11222223333333322 2455667
Q ss_pred hcccCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhC-cchhHHHHHHHHHHH
Q psy6142 385 MGEILPAKIRGSAASLATAFNWTCTFIVTKTFNDLTALLG-THGAFWLFGVVCLVG 439 (483)
Q Consensus 385 ~~Ei~P~~~R~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~f~i~~~~~~i~ 439 (483)
..|.+|++ |+.+.++.. ++.++..+.+...+.+.+..| ++.+|++.+++.++.
T Consensus 372 ~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 372 GIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred HHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 78999987 888888877 667888888888888888888 888887765554443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.94 E-value=4.5e-25 Score=225.63 Aligned_cols=392 Identities=12% Similarity=0.050 Sum_probs=218.4
Q ss_pred CCcccccchhhHHHHHHHHHHHHHHhhhhhhhhc-cchhHHHHHhhHHHHHHHHHHHhhccHHHHHHHHHHhhhcccccc
Q psy6142 22 DDVKINYIQASWIGSLMPLSALFGGMAGGPLIES-LGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIAS 100 (483)
Q Consensus 22 ~~~~~~~~~~~~~~s~~~~g~~lG~~~~G~l~D~-~GRr~~l~~~~~l~~~~~~l~~~a~~~~~l~~~R~l~G~~~g~~~ 100 (483)
+|++.+..+.+++.+++.++..+++++.|+++|| +|||+++..+.++..++.+++++++|++.++++|+++|++.|...
T Consensus 47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence 3577899999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred cchhhhhcccCCCCc--cchhchHhHHHHHHHHHHHHHhhh----hhhhHHHHHHhhHHHHHHHHHHhcC-c----CChh
Q psy6142 101 LALPVYLGETVQPEV--RGTLGLLPTFLGNIGILTCFIAGT----FLNWYQLAFFGACIPVPFLICMFLI-P----ETPR 169 (483)
Q Consensus 101 ~~~~~~i~E~~p~~~--Rg~~~~~~~~~~~~g~~~~~~~g~----~~~w~~~~~~~~~~~~~~~~~~~~~-p----ESp~ 169 (483)
+...+++.|..|+++ |+...+..+....+|..+++.++. ..+||..+++.....++.++...+. | +..+
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL 206 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 999999999999999 555666666777777655554443 3578988877655444333333221 1 1111
Q ss_pred hhhhcCCHHHHHHHHHH----------------HhCC-CcchhHHHH-HH--HHHhhccccccccCccchhhhhhhchh-
Q psy6142 170 WYIGRNKQKQARKALQW----------------LRGK-DADISREFA-EI--EKMNNEGNAAEDENSTGCSEVFKAMYM- 228 (483)
Q Consensus 170 ~l~~~~~~~~a~~~l~~----------------~~~~-~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~- 228 (483)
.-..+.+.++.++..++ ..+. +.+...... .. ...........++.. .....++...
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 284 (491)
T 4aps_A 207 RPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVK--VTSTEHLRVVS 284 (491)
T ss_dssp CCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC--------------CTT
T ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhccc--ccHHHHHHHHH
Confidence 11111233444443333 1111 111000000 00 000000000000000 0000011011
Q ss_pred -hHHHHHHHHHHHHHhhhhHHHHHhhhhccccccccccccccCCCcccccccCCCCCchhhhhhCCC-CchhHHHHHHHH
Q psy6142 229 -RPLLISIGLMFFQQMSGINAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEDAGST-INENYCTIIVGV 306 (483)
Q Consensus 229 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 306 (483)
............... .. ...++.+.+ +..+.+ .+..+.....++
T Consensus 285 ~~~~~~~~~~~~~~~~-~~-----------------------~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 330 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEE-QG-----------------------SVVLATFAA----------ERVDSSWFPVSWFQSLNPL 330 (491)
T ss_dssp HHHHHHHHHHHHHHHG-GG-----------------------GTHHHHHHH----------HSCCCSSSCSGGGTTHHHH
T ss_pred HHHHHHHHHHHHHHHh-hc-----------------------cHHHHHHHH----------HHhccCccCHHHHhccchH
Confidence 111111111000000 00 000111100 000011 123444556677
Q ss_pred HHHHHHHHHHHhhhcccchHHHH-----HHhHHHHHHHHHHHHHHhhccCCCCccccchHHHHHHHHHHHHHhccccchh
Q psy6142 307 VNLLSVLIATALIDRLGRKILLY-----ISSTAMILTLATLGTFFYFKSTGSDVSELGWLPLLSFVVYVIGFSIGFGSIP 381 (483)
Q Consensus 307 ~~~~~~~i~~~lvdr~GRr~~l~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 381 (483)
+.+++.++.+++.||+|||+... .+.++..++...+......... ......+...+..++..++.+.. .+..
T Consensus 331 ~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~g~~~~~~-~~~~ 407 (491)
T 4aps_A 331 FIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGT--SGKVSPLWLVGSWALVILGEMLI-SPVG 407 (491)
T ss_dssp HHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCC--CTTCCTHHHHHHHHHHHHHHHTT-TTHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCccHHHHHHHHHHHHHHHHHH-hHHH
Confidence 78888999999999999986544 4444333333322221111110 01111223333333333333322 3555
Q ss_pred hhhhcccCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHhhhhcccCCCC
Q psy6142 382 WLMMGEILPAKIRGSAASLATAFNWTCTFIVTKTFNDLTALLGTHGAFWLFGVVCLVGLFFVIIFVPETQGK 453 (483)
Q Consensus 382 ~~~~~Ei~P~~~R~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~f~i~~~~~~i~~i~~~~~lpet~~~ 453 (483)
+.+..|.+|++.|+++.++......++..+++...+...+ .+....|++++++++++.++.+++.|+++++
T Consensus 408 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 408 LSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999999888888888776654433 3556677777777777766666666666554
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.88 E-value=1e-22 Score=200.65 Aligned_cols=327 Identities=14% Similarity=0.096 Sum_probs=208.0
Q ss_pred CCcccccchhhHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHhhHHHHHHHHHHHhhccHHHHHHHHHHhhhccccccc
Q psy6142 22 DDVKINYIQASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASL 101 (483)
Q Consensus 22 ~~~~~~~~~~~~~~s~~~~g~~lG~~~~G~l~D~~GRr~~l~~~~~l~~~~~~l~~~a~~~~~l~~~R~l~G~~~g~~~~ 101 (483)
++++.+..+.+++.+++.++..++.++.|+++||+|||++++.+.++..++.++.++++|++.++++|+++|++.+...+
T Consensus 28 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~ 107 (375)
T 2gfp_A 28 RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGV 107 (375)
T ss_dssp TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhh
Confidence 45668889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcccCCCCccchhchHhHHHHHHHHHHHHHhhh----hhhhHHHHHHhhHHHHHHHH-HHhcCcCChhhhhhcCC
Q psy6142 102 ALPVYLGETVQPEVRGTLGLLPTFLGNIGILTCFIAGT----FLNWYQLAFFGACIPVPFLI-CMFLIPETPRWYIGRNK 176 (483)
Q Consensus 102 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~g~~~~~~~g~----~~~w~~~~~~~~~~~~~~~~-~~~~~pESp~~l~~~~~ 176 (483)
....++.|..|+++|++..+..+....+|..+++.++. ..+||..+.+.....++..+ ..+++||+|++..+ +
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 185 (375)
T 2gfp_A 108 MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAP--R 185 (375)
T ss_dssp HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCC--C
T ss_pred hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcc--c
Confidence 99999999999999999998888888888766665543 34788887765555544433 34567887643100 0
Q ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHhhccccccccCccchhhhhhhchhhHHHHHHHHHHHHHhhhhHHHHHhhhhc
Q psy6142 177 QKQARKALQWLRGKDADISREFAEIEKMNNEGNAAEDENSTGCSEVFKAMYMRPLLISIGLMFFQQMSGINAVLASLTVS 256 (483)
Q Consensus 177 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (483)
++.....++.+|++........... ... .......
T Consensus 186 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~----- 220 (375)
T 2gfp_A 186 ------------------------------------TRLLTSYKTLFGNSGFNCYLLMLIG---GLA-GIAAFEA----- 220 (375)
T ss_dssp ------------------------------------CCTTTCSTHHHHHHHHHHHHHHHHH---HHH-HHHHHHH-----
T ss_pred ------------------------------------ccHHHHHHHHhcCcchHHHHHHHHH---HHH-HHHHHHH-----
Confidence 0001122344444332222221111 111 1111110
Q ss_pred cccccccccccccCCCcccccccCCCCCchhhhhhCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHhHH-H
Q psy6142 257 LGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEDAGSTINENYCTIIVGVVNLLSVLIATALIDRLGRKILLYISSTA-M 335 (483)
Q Consensus 257 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lvdr~GRr~~l~~~~~~-~ 335 (483)
+ +|.+.+ +....+..+........+++.+++.++.+++.||+|||.. .+... .
T Consensus 221 -----------~----~~~~~~---------~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~--~~~~~~~ 274 (375)
T 2gfp_A 221 -----------C----SGVLMG---------AVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCL 274 (375)
T ss_dssp -----------H----CSCSSH---------HHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHH--HHHHHHH
T ss_pred -----------H----HHHHHH---------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 1 111110 0000011123455566678888899999999999887332 22221 1
Q ss_pred HHHHHHHHHHHhhccCCCCccccchHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhHHHHHHHHHHHHHHHHH
Q psy6142 336 ILTLATLGTFFYFKSTGSDVSELGWLPLLSFVVYVIGFSIGFGSIPWLMMGEILPAKIRGSAASLATAFNWTCTFIVTKT 415 (483)
Q Consensus 336 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Ei~P~~~R~~~~s~~~~~~~~~~~~~~~~ 415 (483)
..+...+.... .. ....+......++..++.+.. .+....+..|.+| +.|+++.++.+..+.++..+.+..
T Consensus 275 ~~~~~~~~~~~-~~------~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~ 345 (375)
T 2gfp_A 275 LAGLLMWIPDW-FG------VMNVWTLLVPAALFFFGAGML-FPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASL 345 (375)
T ss_dssp HTSSSSSHHHH-HH------HHHHHHHHHHHHHHHHHHHHT-SSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTT
T ss_pred HHHHHHHHHhh-hc------cccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHH
Confidence 11111000000 00 001122233333334444332 3455677889998 899999999999888888887777
Q ss_pred HHHHHHHhCcchhHH
Q psy6142 416 FNDLTALLGTHGAFW 430 (483)
Q Consensus 416 ~~~~~~~~g~~~~f~ 430 (483)
.+.+.+..++...++
T Consensus 346 ~g~l~~~~~~~~~~~ 360 (375)
T 2gfp_A 346 SAMLPQTGQGSLGLL 360 (375)
T ss_dssp CTHHHHHHHHHHHHH
T ss_pred HHHHhcCCcccHHHH
Confidence 666665555554443
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.87 E-value=6.2e-21 Score=196.54 Aligned_cols=138 Identities=13% Similarity=0.116 Sum_probs=116.7
Q ss_pred cccccchhhHHHHHHHHHHHHHHhhhhhhhhcc-chhHHHHHhhHHHHHHHHHHHhhc-cHHHHHHHHHHhhhccccccc
Q psy6142 24 VKINYIQASWIGSLMPLSALFGGMAGGPLIESL-GRRTTILSTGLPFIVSFLLIALAN-GVPMILAGRCVAGFCVGIASL 101 (483)
Q Consensus 24 ~~~~~~~~~~~~s~~~~g~~lG~~~~G~l~D~~-GRr~~l~~~~~l~~~~~~l~~~a~-~~~~l~~~R~l~G~~~g~~~~ 101 (483)
...+..+.+++.+++.++..++.++.|+++||+ |||+++..+.++..++.++.++++ +++.++++|+++|++.|...+
T Consensus 49 ~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 128 (524)
T 2xut_A 49 EELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKP 128 (524)
T ss_dssp SSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccch
Confidence 337889999999999999999999999999999 999999999999999999999999 999999999999999999999
Q ss_pred chhhhhcccCCCCccchhchH---hHHHHHHHHHHHHHhhhh----hhhHHHHHHhhHHHHHHHHHH
Q psy6142 102 ALPVYLGETVQPEVRGTLGLL---PTFLGNIGILTCFIAGTF----LNWYQLAFFGACIPVPFLICM 161 (483)
Q Consensus 102 ~~~~~i~E~~p~~~Rg~~~~~---~~~~~~~g~~~~~~~g~~----~~w~~~~~~~~~~~~~~~~~~ 161 (483)
...+++.|.+|+++|++.... ......+|..+++.++.. .+|+..+.+.....+...+..
T Consensus 129 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 129 LVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999876655 666677776665554432 368888777655544443333
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.85 E-value=2.2e-21 Score=194.13 Aligned_cols=359 Identities=15% Similarity=0.114 Sum_probs=188.8
Q ss_pred CcccccchhhHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHhhHHHHHHHH---HHHhhccH-HHHHHHHHHhhhcccc
Q psy6142 23 DVKINYIQASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFL---LIALANGV-PMILAGRCVAGFCVGI 98 (483)
Q Consensus 23 ~~~~~~~~~~~~~s~~~~g~~lG~~~~G~l~D~~GRr~~l~~~~~l~~~~~~---l~~~a~~~-~~l~~~R~l~G~~~g~ 98 (483)
+++.+..+.+++.+++.++.+++++++|+++||+|||++++++..++.++.. ..++++.. ..+..+|++.|++.|.
T Consensus 37 ~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 116 (417)
T 2cfq_A 37 INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGF 116 (417)
T ss_dssp TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999999988877655321 11232221 1235567777776665
Q ss_pred cccchhhhhcccCCC--CccchhchHh----HHHHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHhcCc-CChhhh
Q psy6142 99 ASLALPVYLGETVQP--EVRGTLGLLP----TFLGNIGILTCFIAGTFLNWYQLAFFGACIPVPFLICMFLIP-ETPRWY 171 (483)
Q Consensus 99 ~~~~~~~~i~E~~p~--~~Rg~~~~~~----~~~~~~g~~~~~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~p-ESp~~l 171 (483)
..+.....+.++.++ ++|+...+.. .....+|+.++..+.. .+|+..+++.....+...+..++.| |+|+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~- 194 (417)
T 2cfq_A 117 CFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPSS- 194 (417)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCS-
T ss_pred HHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcccccc-
Confidence 544444444444433 2334322222 2223333322222211 3578777765555443333444444 44321
Q ss_pred hhcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHhhccccccccCccchhhhhhhchhhHHHHHHHHHHHHHhhhhHHHHH
Q psy6142 172 IGRNKQKQARKALQWLRGKDADISREFAEIEKMNNEGNAAEDENSTGCSEVFKAMYMRPLLISIGLMFFQQMSGINAVLA 251 (483)
Q Consensus 172 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (483)
.++++.+ +.+.++......++.++++.............. ........
T Consensus 195 ---~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-- 242 (417)
T 2cfq_A 195 ---ATVANAV--------------------------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSC-TYDVFDQQ-- 242 (417)
T ss_dssp ---SCSSSSS--------------------------SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHH-HHHHHHHH--
T ss_pred ---ccccccc--------------------------ccccccccHHHHHHHhcCCchhhHHHHHHHHHH-HHHHHHHH--
Confidence 1100000 000000000112334443322222211111100 00000000
Q ss_pred hhhhccccccccccccccCCCcccccccCCCCCchhhhhhCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHH
Q psy6142 252 SLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEDAGSTINENYCTIIVGVVNLLSVLIATALIDRLGRKILLYIS 331 (483)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lvdr~GRr~~l~~~ 331 (483)
+|.+.... ...... ......+...+..+++.++.++.+++.||+|||+.+..+
T Consensus 243 ---------------------~~~~~~~~--~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~ 295 (417)
T 2cfq_A 243 ---------------------FANFFTSF--FATGEQ----GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLA 295 (417)
T ss_dssp ---------------------HHHHHHHT--SSSHHH----HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred ---------------------HHHHHHHH--HhccCC----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence 00000000 000000 000112334455667888999999999999999988776
Q ss_pred hHHHHHHHHHHHHHHhhccCCCCccccchHHHHHHHHHHHHHhccccchhhhhhcccCCccchhhhhHHH-HHHHHHHHH
Q psy6142 332 STAMILTLATLGTFFYFKSTGSDVSELGWLPLLSFVVYVIGFSIGFGSIPWLMMGEILPAKIRGSAASLA-TAFNWTCTF 410 (483)
Q Consensus 332 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Ei~P~~~R~~~~s~~-~~~~~~~~~ 410 (483)
.+...+....+. . .. ..+...+..++...+.+. ..+..+.+++|.+|++.|+++.++. +..+.++..
T Consensus 296 ~~~~~~~~~~~~----~-~~------~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~ 363 (417)
T 2cfq_A 296 GTIMSVRIIGSS----F-AT------SALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI 363 (417)
T ss_dssp HHHHHHHHHHHT----T-CC------SHHHHHHHTTHHHHHHHH-HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHH----H-hc------cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHH
Confidence 654444332221 1 10 112222222222222211 1223457889999999999999985 666667888
Q ss_pred HHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHhhhhcccCCCCC
Q psy6142 411 IVTKTFNDLTALLGTHGAFWLFGVVCLVGLFFVIIFVPETQGKS 454 (483)
Q Consensus 411 ~~~~~~~~~~~~~g~~~~f~i~~~~~~i~~i~~~~~lpet~~~~ 454 (483)
+++...+.+.+..|+...|++.+++++++.++.+++.||+++.+
T Consensus 364 ~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 364 FMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 88887777777667777788888888877776666677766543
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.03 E-value=4.4e-09 Score=105.32 Aligned_cols=148 Identities=14% Similarity=0.088 Sum_probs=106.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHhHHHHHHHHHHHHHHhhccCCCCccccchHHHHHHHHHHHHHhc
Q psy6142 296 NENYCTIIVGVVNLLSVLIATALIDRLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGWLPLLSFVVYVIGFSI 375 (483)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i~~~lvdr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 375 (483)
+..+......++..++.++.|++.||+|||+.++.+.++..++.+..+..... .. ..+..++..++ .+++.
T Consensus 63 ~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-~~------~~~~l~~~~~l--~G~~~ 133 (451)
T 1pw4_A 63 DLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA-TS------SIAVMFVLLFL--CGWFQ 133 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH-HS------SSSHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc-cc------cHHHHHHHHHH--HHHHh
Confidence 45667777788899999999999999999999988877666655544321110 11 11223333333 33333
Q ss_pred cc-cchhhhhhcccCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhC-cchhHHHHHHHHHHHHHHhhhhcccCCC
Q psy6142 376 GF-GSIPWLMMGEILPAKIRGSAASLATAFNWTCTFIVTKTFNDLTALLG-THGAFWLFGVVCLVGLFFVIIFVPETQG 452 (483)
Q Consensus 376 g~-~~~~~~~~~Ei~P~~~R~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~f~i~~~~~~i~~i~~~~~lpet~~ 452 (483)
+. .+....+++|.+|++.|+.+.++......++..+++.+...+.+..+ |+++|++.++++++..++.++++||+..
T Consensus 134 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 134 GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred hhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 32 24445788899999999999999988888888888777777777788 9999999888887776666677888644
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.83 E-value=3.2e-09 Score=105.66 Aligned_cols=139 Identities=12% Similarity=0.181 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHhhHHHHHHHHHHHhhccHHHHHHHHHHhhhcccccccchhhhhccc
Q psy6142 31 ASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGET 110 (483)
Q Consensus 31 ~~~~~s~~~~g~~lG~~~~G~l~D~~GRr~~l~~~~~l~~~~~~l~~~a~~~~~l~~~R~l~G~~~g~~~~~~~~~i~E~ 110 (483)
.++..++..++..+|.++.|+++||+|||+.+..+.++..++.++.+++++.+.+.+..++.|++.+...+....++.|.
T Consensus 261 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 340 (417)
T 2cfq_A 261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ 340 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666678889999999999999999999999888888887888888888888888888988777777778899999
Q ss_pred CCCCccchhchH-hHHHHHHHH-HHHHHhhhhh---hhHHHHHHhhHHHHHHHHH-HhcCcCChh
Q psy6142 111 VQPEVRGTLGLL-PTFLGNIGI-LTCFIAGTFL---NWYQLAFFGACIPVPFLIC-MFLIPETPR 169 (483)
Q Consensus 111 ~p~~~Rg~~~~~-~~~~~~~g~-~~~~~~g~~~---~w~~~~~~~~~~~~~~~~~-~~~~pESp~ 169 (483)
.|++.||..... .+....+|. +.+.+.|... ++...+.....+.++..+. ..+.||.++
T Consensus 341 ~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp SCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 999999986555 344444543 3334444433 3444554444444333333 344565443
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.78 E-value=7.8e-08 Score=95.80 Aligned_cols=146 Identities=14% Similarity=0.059 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHhHHHHHHHHHHHHHHhhccCCCCccccchHHHHHHHHHHHHHhcc
Q psy6142 297 ENYCTIIVGVVNLLSVLIATALIDRLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGWLPLLSFVVYVIGFSIG 376 (483)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i~~~lvdr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 376 (483)
..+......++..++.++.|++.||+|||+.++.+.++..++......... . ...+..++..+ ..|.+.+
T Consensus 63 ~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~------~~~~~l~~~~~--l~G~~~~ 132 (438)
T 3o7q_A 63 AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE--I------MNYTLFLVGLF--IIAAGLG 132 (438)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH--T------TCHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc--c------ccHHHHHHHHH--HHHhhHH
Confidence 456677778888899999999999999999999887776665544321111 1 01123333333 3344433
Q ss_pred cc-chhhhhhcccCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH-HHhC-------------------------cchhH
Q psy6142 377 FG-SIPWLMMGEILPAKIRGSAASLATAFNWTCTFIVTKTFNDLT-ALLG-------------------------THGAF 429 (483)
Q Consensus 377 ~~-~~~~~~~~Ei~P~~~R~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~g-------------------------~~~~f 429 (483)
.. +....+.+|.+|++.|+.+.++......++..+++.....+. ...+ |++.|
T Consensus 133 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 212 (438)
T 3o7q_A 133 CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPY 212 (438)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHH
Confidence 32 344578899999999999999999888888888877766655 3333 67777
Q ss_pred HHHHHHHHHHHHHhhh-hcccCCC
Q psy6142 430 WLFGVVCLVGLFFVII-FVPETQG 452 (483)
Q Consensus 430 ~i~~~~~~i~~i~~~~-~lpet~~ 452 (483)
++.++..++..+..++ ..||++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~p~~~~ 236 (438)
T 3o7q_A 213 MIIVAIVLLVALLIMLTKFPALQS 236 (438)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHcCCcccc
Confidence 7766665554443322 3455543
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.69 E-value=1.3e-08 Score=99.32 Aligned_cols=144 Identities=15% Similarity=0.119 Sum_probs=101.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHhHHHHHHHHHHHHHHhhccCCCCccccchHHHHHHHHHHHHHhcc
Q psy6142 297 ENYCTIIVGVVNLLSVLIATALIDRLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGWLPLLSFVVYVIGFSIG 376 (483)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i~~~lvdr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 376 (483)
..+......++..++.++.+++.||+|||+.++.+.....++........ ..+...+.. +..+.+.+
T Consensus 37 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~--~l~g~~~~ 103 (375)
T 2gfp_A 37 VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS-----------SLTVLIAAS--AMQGMGTG 103 (375)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc-----------cHHHHHHHH--HHHHHHHH
Confidence 34566777888899999999999999999999888776665554433211 112222222 23333333
Q ss_pred c-cchhhhhhcccCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHhhhhcccCCCC
Q psy6142 377 F-GSIPWLMMGEILPAKIRGSAASLATAFNWTCTFIVTKTFNDLTALLGTHGAFWLFGVVCLVGLFFVIIFVPETQGK 453 (483)
Q Consensus 377 ~-~~~~~~~~~Ei~P~~~R~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~f~i~~~~~~i~~i~~~~~lpet~~~ 453 (483)
. .+....+..|.+|++.|+++.++......++..+.+.....+.+..+|+++|++.++..++..+...+++||++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 104 VGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred hhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 2 2444578889999999999999998888888888877776666666788888888887777666556677887643
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.68 E-value=1.2e-07 Score=96.12 Aligned_cols=139 Identities=14% Similarity=0.054 Sum_probs=86.4
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHhhHHHHHHHHHHHhhc----cHH--HHHHHHHHhhhccccccc
Q psy6142 28 YIQASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALAN----GVP--MILAGRCVAGFCVGIASL 101 (483)
Q Consensus 28 ~~~~~~~~s~~~~g~~lG~~~~G~l~D~~GRr~~l~~~~~l~~~~~~l~~~a~----~~~--~l~~~R~l~G~~~g~~~~ 101 (483)
..+.........+...++.++.+++.||+|||+.++.+.....++.+..+... +.. .+.+.-+..+++.+ ..+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 389 (491)
T 4gc0_A 311 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS-WGP 389 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT-TTH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH-HHH
Confidence 33444555566788889999999999999999999998888877766554431 111 22223233333333 235
Q ss_pred chhhhhcccCCCCccchhchHhHHHHHHHHHHHHHhhhhh----------hhHHHHHHhhHHHHH-HHHHHhcCcCC
Q psy6142 102 ALPVYLGETVQPEVRGTLGLLPTFLGNIGILTCFIAGTFL----------NWYQLAFFGACIPVP-FLICMFLIPET 167 (483)
Q Consensus 102 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~g~~~~~~~g~~~----------~w~~~~~~~~~~~~~-~~~~~~~~pES 167 (483)
..+.|..|.+|.+.|++..++......++..+........ ++...+++.+.+.++ .+..++++||+
T Consensus 390 ~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 390 VCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 6778999999999999988777666666544433222111 112223333333333 33456789997
No 13
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.64 E-value=2.9e-07 Score=93.20 Aligned_cols=137 Identities=18% Similarity=0.147 Sum_probs=94.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhc-ccchHHHHHHhHHHHHHHHHHHHHHhhccCCCCccccchHHHHHHHHHHHHHhc
Q psy6142 297 ENYCTIIVGVVNLLSVLIATALIDR-LGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGWLPLLSFVVYVIGFSI 375 (483)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i~~~lvdr-~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 375 (483)
..+......++..++.++.|++.|| +|||+.+..+.++..++...... .+ ..+...+..++ .|.+.
T Consensus 56 ~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~~~l--~g~~~ 122 (491)
T 4aps_A 56 AASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL-----PF------GASALFGSIIL--IIIGT 122 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS-----CC------STTHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH-----hh------hHHHHHHHHHH--HHHHH
Confidence 4566777788899999999999999 89999998887665555443321 11 11233333333 33333
Q ss_pred cc-cchhhhhhcccCCccc--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHhhhh
Q psy6142 376 GF-GSIPWLMMGEILPAKI--RGSAASLATAFNWTCTFIVTKTFNDLTALLGTHGAFWLFGVVCLVGLFFVIIF 446 (483)
Q Consensus 376 g~-~~~~~~~~~Ei~P~~~--R~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~f~i~~~~~~i~~i~~~~~ 446 (483)
+. .+....+++|.+|++. |+.+.++......++..+++...+.+.+..||+++|++.++..+++.+..++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 123 GFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 32 2445678889999998 66777777777778888888888878887899999998777766665544433
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.56 E-value=8.5e-07 Score=90.59 Aligned_cols=137 Identities=15% Similarity=0.046 Sum_probs=92.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhcc-cchHHHHHHhHHHHHHHHHHHHHHhhccCCCCccccchHHHHHHHHHHHHHh
Q psy6142 296 NENYCTIIVGVVNLLSVLIATALIDRL-GRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGWLPLLSFVVYVIGFS 374 (483)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i~~~lvdr~-GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 374 (483)
+..+......++..++.+++|++.||+ |||+.++.+.++..++...... .. ...+...+..+ ..+.+
T Consensus 55 ~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~----~~------~~~~~~~~~~~--l~g~~ 122 (524)
T 2xut_A 55 VAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAI----FE------HSVQGFYTGLF--LIALG 122 (524)
T ss_dssp THHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHH----TS------SCHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH----hc------ccHHHHHHHHH--HHHHh
Confidence 345667777888899999999999999 9999988876655554443321 10 01122233333 33444
Q ss_pred ccc-cchhhhhhcccCCccchhhhhHH---HHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHhh
Q psy6142 375 IGF-GSIPWLMMGEILPAKIRGSAASL---ATAFNWTCTFIVTKTFNDLTALLGTHGAFWLFGVVCLVGLFFVI 444 (483)
Q Consensus 375 ~g~-~~~~~~~~~Ei~P~~~R~~~~s~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~f~i~~~~~~i~~i~~~ 444 (483)
.+. .+....+++|.+|++.|++..+. ......++..+++...+.+.+..+|+++|++.+++.+++.+..+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 123 SGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 333 24455788899999999877666 66666677777777666677777899889887777666555433
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=42.54 E-value=8.1 Score=19.75 Aligned_cols=14 Identities=36% Similarity=0.593 Sum_probs=11.0
Q ss_pred hhhhhhhccchhHH
Q psy6142 48 AGGPLIESLGRRTT 61 (483)
Q Consensus 48 ~~G~l~D~~GRr~~ 61 (483)
++|.+..+||||..
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46888999999853
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=23.99 E-value=81 Score=26.74 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhhhhhhhccchh
Q psy6142 38 MPLSALFGGMAGGPLIESLGRR 59 (483)
Q Consensus 38 ~~~g~~lG~~~~G~l~D~~GRr 59 (483)
|.+|-.+++.+.|++.||..++
T Consensus 102 YLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 102 YRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHHHHHHcccc
Confidence 6778888888999999987644
Done!