RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6142
(483 letters)
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 222 bits (567), Expect = 3e-67
Identities = 122/441 (27%), Positives = 204/441 (46%), Gaps = 48/441 (10%)
Query: 29 IQASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANG--VPMIL 86
+ + I S+ + L G + G L + GR+ ++L + F++ LL A G M++
Sbjct: 46 VLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLI 105
Query: 87 AGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGNIGILTCFIAGTFLNWYQ- 145
GR + G VG S+ +P+Y+ E ++RG LG L GIL I G LN Y
Sbjct: 106 VGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSN 165
Query: 146 ------LAFFGACIPVPFLICMFLIPETPRWYIGRNKQKQARKALQWLRGKDADISREFA 199
+ LI + +PE+PRW + + K ++AR L LRG +D+ +E
Sbjct: 166 SDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRG-VSDVDQEIQ 224
Query: 200 EIEKMNNEGNAAEDENSTGCSEVFKAMYMRPLLISIGLMFFQQMSGINAVLASLTVSLGS 259
E + E E ++ + LL+ + L FQQ++GINA+
Sbjct: 225 EEKDSLERSV--EAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIF--------- 273
Query: 260 MIVGFASAYTSPAIPSMNQMGSRVSPTEEEDAGSTINENYCTIIVGVVNLLSVLIATALI 319
Y SP I + + TIIVGVVN + IA L+
Sbjct: 274 --------YYSPTIFETLGLS---------------DSLLVTIIVGVVNFVFTFIAIFLV 310
Query: 320 DRLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGWLPLLSFVVYVIGFSIGFGS 379
DR GR+ LL + + M + LG + G + ++ ++++ F++G+G
Sbjct: 311 DRFGRRPLLLLGAAGMAICFLVLGVALLGVAK---SKGAGIVAIVFILLFIAFFALGWGP 367
Query: 380 IPWLMMGEILPAKIRGSAASLATAFNWTCTFIVTKTFNDLTALLGTHGAFWLFGVVCLVG 439
+PW+++ E+ P +R A ++ATA NW F++ F +T +G F +F + ++
Sbjct: 368 VPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGG-YVFLVFAGLLVLF 426
Query: 440 LFFVIIFVPETQGKSLEDIER 460
+ FV FVPET+G++LE+I+
Sbjct: 427 ILFVFFFVPETKGRTLEEIDE 447
Score = 31.5 bits (72), Expect = 0.96
Identities = 41/208 (19%), Positives = 78/208 (37%), Gaps = 27/208 (12%)
Query: 253 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEDAGSTINENYCTIIVGVVNL--- 309
L +LG + G+ + + + + T ++ +IV + ++
Sbjct: 3 LVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAAS--TVLSGLIVSIFSVGCL 60
Query: 310 LSVLIATALIDRLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGWLPLLSFVVY 369
+ L A L DR GRK L + L +G + G ++ ++ V
Sbjct: 61 IGSLFAGKLGDRFGRKKSL-----LIGNVLFVIGALLQGFAKGKSF----YMLIVGRV-- 109
Query: 370 VIGFSIGFGS--IPWLMMGEILPAKIRGSAAS---LATAFNWTCTFIVTKTFNDLTALLG 424
++G +G S +P + + EI P K+RG+ S L F I+ N + G
Sbjct: 110 IVGLGVGGISVLVP-MYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDG 168
Query: 425 THGAFWLFGVVCLVGLFFVII--FVPET 450
G+ + + +I F+PE+
Sbjct: 169 WR---IPLGLQFVPAILLLIGLLFLPES 193
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 214 bits (546), Expect = 9e-64
Identities = 129/443 (29%), Positives = 200/443 (45%), Gaps = 43/443 (9%)
Query: 28 YIQASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALAN---GVPM 84
+ S+ + G + G L + GR+ ++L L F++ +L+ LA V M
Sbjct: 70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEM 129
Query: 85 ILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGNIGILT--CFIAGTFLN 142
++ GR + G VGIAS +P+YL E +RG L L GIL F +G
Sbjct: 130 LIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSL 189
Query: 143 WYQLAF---FGACI--PVPFLICMFLIPETPRWYIGRNKQKQARKALQWLRG-KDADISR 196
L + G + + +F +PE+PRW +G+ + ++ARK+L LRG D
Sbjct: 190 NNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKEL 249
Query: 197 EFAEIEKMNNEGNAAEDENSTGCSEV-FKAMYMRPLLISIGLMFFQQMSGINAVLASLTV 255
+ S R L + + L +FQQ +GINA++
Sbjct: 250 LDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIM----- 304
Query: 256 SLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEDAGSTINENYCTIIVGVVNLLSVLIA 315
Y SP I G ST + +IIVG VN +A
Sbjct: 305 ------------YYSPTI--FENAGV-----------STDHAFLVSIIVGAVNFAFTFVA 339
Query: 316 TALIDRLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGWLPLLSFVVYVIGFSI 375
L+DR GR+ LL I + M + L LG TGS S G + ++ ++++ F++
Sbjct: 340 IFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKS-SGNVAIVFILLFIAFFAM 398
Query: 376 GFGSIPWLMMGEILPAKIRGSAASLATAFNWTCTFIVTKTFNDLTALLGTHGAFWLFGVV 435
G+G +PW+++ EI P +R S+A A NW FIV F + +G G F FG +
Sbjct: 399 GWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGL 458
Query: 436 CLVGLFFVIIFVPETQGKSLEDI 458
++GL FV F+PET+G++LE+I
Sbjct: 459 NVLGLIFVYFFLPETKGRTLEEI 481
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 178 bits (454), Expect = 2e-50
Identities = 126/450 (28%), Positives = 201/450 (44%), Gaps = 84/450 (18%)
Query: 45 GGMAGGPLIESLGRRTTILSTGLPFIVS--------FLLIAL----ANGVPMILAGRCVA 92
GG GG GRR ++ + F +S F ++ VP + R +
Sbjct: 71 GGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIG 130
Query: 93 GFCVGIASLALPVYLGETVQPEVRGTL----------GLLPTFLGNIGILTCFIAGTFLN 142
G VG+AS+ P+Y+ E +RG L G L + N I +
Sbjct: 131 GIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIA----RSGDAS 186
Query: 143 W-----YQLAFFGACIP-VPFLICMFLIPETPRWYIGRNKQKQARKALQWLRGKDADISR 196
W ++ F IP + FL+ ++ +PETPR+ + R KQ+QA L+ + G ++
Sbjct: 187 WLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNT-LATQ 245
Query: 197 EFAEIEKMNNEGNAAEDENSTGCSEVFKAMYMRPLLISIGLMFFQQMSGINAVLASLTVS 256
EI+ + G + G +F ++I + L FQQ GIN VL
Sbjct: 246 ALQEIKHSLDHGR-----KTGGKLLMFGVGV---IVIGVMLSVFQQFVGINVVL------ 291
Query: 257 LGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEDAGSTINENYCTIIVGVVNLLSVLIAT 316
Y +P I +G ST TIIVGV+NL ++A
Sbjct: 292 -----------YYAPEI--FKTLG-----------ASTDIALLQTIIVGVINLTFTVLAI 327
Query: 317 ALIDRLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGWLPLLSFVVYVIGFSIG 376
+D+ GRK L I + M + + +LGT FY ++ G + LLS + YV F++
Sbjct: 328 MTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI-------VALLSMLFYVAAFAMS 380
Query: 377 FGSIPWLMMGEILPAKIRGSAASLATAFNWTCTFIVTKTFN--DLTALLGTHG----AFW 430
+G + W+++ EI P IRG A ++A A W + V+ TF D + L H ++W
Sbjct: 381 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYW 440
Query: 431 LFGVVCLVGLFFVIIFVPETQGKSLEDIER 460
++G + ++ F+ FVPET+GK+LE++E
Sbjct: 441 IYGCMGVLAALFMWKFVPETKGKTLEEMEA 470
Score = 38.1 bits (89), Expect = 0.010
Identities = 48/168 (28%), Positives = 72/168 (42%), Gaps = 32/168 (19%)
Query: 309 LLSVLIATALI-------------DRLGRKILLYISSTAMILTLATLGTF---FYFKSTG 352
LL +A+ALI +R GR+ L I+ A++ ++ LG+ F F S G
Sbjct: 56 LLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIA--AVLFFISALGSAWPEFGFTSIG 113
Query: 353 SDVSELGWLPLLSFVVYVIGFSIGFG---SIPWLMMGEILPAKIRGSAAS---LATAFNW 406
D + FV+Y I IG G + + + EI PA IRG S A F
Sbjct: 114 PD----NTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQ 169
Query: 407 TCTFIVTKTF--NDLTALLGTHGAFWLFGVVCLVGLFFVII--FVPET 450
+ V + + L T G ++F + L F+++ FVPET
Sbjct: 170 LVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPET 217
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 65.4 bits (160), Expect = 2e-11
Identities = 86/420 (20%), Positives = 159/420 (37%), Gaps = 61/420 (14%)
Query: 43 LFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLA 102
L G G L + GR+ +L + L VS +L A + + L R + G +G +
Sbjct: 141 LLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQ 200
Query: 103 LPVYLGETVQPEVRGTLGLLPTFLGNIG-ILTCFIAGTFLNWYQLAFFGACIPVPFLICM 161
V E + + R +G L ++G +L +A +W L + F +
Sbjct: 201 AVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLS 260
Query: 162 FLIPETPRWYIGRNKQKQARKALQWLRGKD-ADISREFAEIEKMNNEGNAAEDENSTGCS 220
+ +PE+PRW I + + ++A K LQ + + + AE+ ++ E + + +
Sbjct: 261 WFVPESPRWLISQGRIEEALKILQRIAKINGKKLP---AEVLSLSLEKDLSSSKKQYSFL 317
Query: 221 EVFKAMYMRPLLISIGLMFFQQMSGINAVLASLTVSLGSMIVGFASAYTSPAIPSMNQMG 280
++F+ +R + + +++F L + LG++ + Y ++
Sbjct: 318 DLFRTPNLRKTTLCLMMLWF----TTAFSYYGLVLDLGNL---GGNIY-------LDL-- 361
Query: 281 SRVSPTEEEDAGSTINENYCTIIVGVVNLLSVLIATALIDRLGRKILLYISSTAMILTLA 340
I G+V L + LI LIDRLGR+ + S + L
Sbjct: 362 ---------------------FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALL 400
Query: 341 TLGTFFYFKSTGSDVSELGWLPLLSFVVYVIGFSIGFGSIPWLMMGEILPAKIRGSAASL 400
L +L +L V+ G + F + +L E+ P +R +
Sbjct: 401 LLLFV---------PVDLYFLRTALAVLGKFGITSAF-QMVYLYTAELYPTVVRNLGVGV 450
Query: 401 ATAFNWTCTFIVTKTFNDLTALLGTHGAFW---LFGVVCLVGLFFVIIFVPETQGKSLED 457
+ V + LG F LFG + L+ +F+PET+G L +
Sbjct: 451 CSTMA-----RVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILT-LFLPETKGVPLPE 504
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 64.6 bits (158), Expect = 2e-11
Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 4/147 (2%)
Query: 23 DVKINYIQASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGV 82
D+ ++ QA I S L G + G L + GRR +L L F + LL+A A+ +
Sbjct: 28 DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSL 87
Query: 83 PMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGNIGILTCFIAGTFL- 141
++L GR + G G A + E P+ RG L + +G L + G L
Sbjct: 88 WLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLA 147
Query: 142 ---NWYQLAFFGACIPVPFLICMFLIP 165
W L A + + + + +
Sbjct: 148 ESLGWRWLFLILAILGLLLALLLLFLL 174
Score = 52.3 bits (126), Expect = 3e-07
Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 11/149 (7%)
Query: 299 YCTIIVGVVNLLSVLIATALIDRLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSEL 358
+ G+ +L L+ L DRLGR+ LL + + L
Sbjct: 215 LLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSL--------- 265
Query: 359 GWLPLLSFVVYVIGFSIGFGSIPWLMMGEILPAKIRGSAASLATAFNWTCTFIVTKTFND 418
L L++ ++ G F ++ L E+ P + RG+A+ L F +
Sbjct: 266 -ALLLVALLLLGFGLGFAFPALLTLAS-ELAPPEARGTASGLFNTFGSLGGALGPLLAGL 323
Query: 419 LTALLGTHGAFWLFGVVCLVGLFFVIIFV 447
L G G F + + L+ +++
Sbjct: 324 LLDTGGYGGVFLILAALALLAALLLLLLP 352
Score = 42.7 bits (101), Expect = 3e-04
Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 6/141 (4%)
Query: 30 QASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPF-IVSFLLIALANGVPMILAG 88
+A + SL L + G + GG L + LGRR +L GL + LL+ALA + ++L
Sbjct: 212 EAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVA 271
Query: 89 RCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGNIGILTCFIAGTFL---NWYQ 145
+ GF +G A AL E PE RGT L G++G + L Y
Sbjct: 272 LLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYG 331
Query: 146 LAF--FGACIPVPFLICMFLI 164
F A + L+ + L
Sbjct: 332 GVFLILAALALLAALLLLLLP 352
Score = 37.7 bits (88), Expect = 0.011
Identities = 40/197 (20%), Positives = 68/197 (34%), Gaps = 24/197 (12%)
Query: 253 LTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEDAGSTINENYCTIIVGVVNLLSV 312
L + LG + G SPA+P + + + S + L
Sbjct: 2 LLLFLGFFLSGLDRGLLSPALPLLAE----------DLGLSASQAGLIVSAFSLGYALGS 51
Query: 313 LIATALIDRLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGWLPLLSFVVYVIG 372
L+A L DR GR+ +L + L L LG+ ++ L LL +++G
Sbjct: 52 LLAGYLSDRFGRRRVLLLG-----LLLFALGSLLLAFASS--------LWLLLVGRFLLG 98
Query: 373 FSIGFGSIPWL-MMGEILPAKIRGSAASLATAFNWTCTFIVTKTFNDLTALLGTHGAFWL 431
G ++ E P K RG A L +A + L LG F +
Sbjct: 99 LGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLI 158
Query: 432 FGVVCLVGLFFVIIFVP 448
++ L+ ++ +
Sbjct: 159 LAILGLLLALLLLFLLR 175
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 59.0 bits (143), Expect = 2e-09
Identities = 62/389 (15%), Positives = 121/389 (31%), Gaps = 80/389 (20%)
Query: 22 DDVKINYIQASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANG 81
+D+ I+ + + + L G L + GRR +L L F + LL+ A+
Sbjct: 25 EDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASS 84
Query: 82 VPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGNIGILTCFIAGTFL 141
+ ++L R + G G A + + PE RG L + +G + G L
Sbjct: 85 LWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLL 144
Query: 142 N---WYQLAFFGACIPVPFLICMFLIPETPRWYIGRNKQKQARKALQWLRGKDADISREF 198
++ AF I + +
Sbjct: 145 ASLFGWRAAFLILAILALLAAVLAAL---------------------------------L 171
Query: 199 AEIEKMNNEGNAAEDENSTGCSEVFKAMYMRP--LLISIGLMFFQQMSGINAVLASLTVS 256
++ +E +K + P L+ L+F + L
Sbjct: 172 LPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEV 231
Query: 257 LGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEDAGSTINENYCTIIVGVVNLLSVLIAT 316
LG SA + + + G++ + L+
Sbjct: 232 LG------LSALLAGLLLG---------------------------LAGLLGAIGRLLLG 258
Query: 317 ALIDRLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGWLPLLSFVVYVIGFSIG 376
L DRLGR+ L ++ +IL L +S+ L++ ++ G +
Sbjct: 259 RLSDRLGRRRRLLLALLLLILAALGLALLSLTESS--------LWLLVALLLLGFGAGLV 310
Query: 377 FGSIPWLMMGEILPAKIRGSAASLATAFN 405
F ++ ++ ++ P + RG+A+ L
Sbjct: 311 FPAL-NALVSDLAPKEERGTASGLYNTAG 338
Score = 36.6 bits (85), Expect = 0.020
Identities = 40/207 (19%), Positives = 68/207 (32%), Gaps = 23/207 (11%)
Query: 255 VSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEDAGSTINENYCTIIVGVVNLLSVLI 314
+ L + + G + PA+P +SPTE + + L+ +
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLT---------AFSLGYALAQPL 51
Query: 315 ATALIDRLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGWLPLLSFVVYVIGFS 374
A L DR GR+ +L I L L L L LL + + G
Sbjct: 52 AGRLSDRFGRRRVLLIGLLLFALGLLLLLFAS-------------SLWLLLVLRVLQGLG 98
Query: 375 IGFGSIPWL-MMGEILPAKIRGSAASLATAFNWTCTFIVTKTFNDLTALLGTHGAFWLFG 433
G ++ + P + RG A L +A + L +L G AF +
Sbjct: 99 GGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILA 158
Query: 434 VVCLVGLFFVIIFVPETQGKSLEDIER 460
++ L+ + +P +S
Sbjct: 159 ILALLAAVLAALLLPRPPPESKRPKPA 185
Score = 33.9 bits (78), Expect = 0.15
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 3/110 (2%)
Query: 26 INYIQASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIV---SFLLIALANGV 82
++ + A + L L G + G L + LGRR +L L I+ L++L
Sbjct: 234 LSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESS 293
Query: 83 PMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGNIGIL 132
+L + GF G+ AL + + E RGT L G++G
Sbjct: 294 LWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGA 343
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 53.9 bits (130), Expect = 8e-08
Identities = 80/382 (20%), Positives = 129/382 (33%), Gaps = 65/382 (17%)
Query: 26 INYIQASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMI 85
++ +Q ++ S + FG + GPL + +GRR +L + L F V LL ALA V +
Sbjct: 49 LDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQL 108
Query: 86 LAGRCVAGFCVGIASLALPVYLGETVQPEVRGT-LGLLPTFLG-NIGILTCFIAGTFL-- 141
L R +AG +G L + E RGT +GL+ F G IG +L
Sbjct: 109 LILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLM--FCGYPIGAAVGGFLAGWLIP 166
Query: 142 --NWYQLAFFGACIPVPFL-ICMFLIPETPRWYIGRNKQKQARKALQWLRGKDADISREF 198
W L + G P+ L + M +PE+ + + + + R A+
Sbjct: 167 VFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSAL 226
Query: 199 AEIEKMNNEGNAAEDENSTGCSEVFKAMYMRPLLISIGLMFFQQMSGINAVLASLTVSLG 258
E + VFK FQ + VL L +
Sbjct: 227 PE-----------QKATQGTKRSVFK-------------ALFQGKTARITVLLWLLYFML 262
Query: 259 SMIVGFASAYTSPAIPSMNQMGSRVSPTEEEDAGSTINENYCTIIVGVVN---LLSVLIA 315
+ V F + + P + G +++ + N ++ +I
Sbjct: 263 LVGVYFLTNWL---------------PKLMVELGFSLSLA--ATGGALFNFGGVIGSIIF 305
Query: 316 TALIDRLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGWLPLLSFVVYVIGFSI 375
L DRLG ++ + + A L F T LL F
Sbjct: 306 GWLADRLGPRVTALLLLLGAV--FAVLVGSTLFSPTL----------LLLLGAIAGFFVN 353
Query: 376 GFGSIPWLMMGEILPAKIRGSA 397
G S + +M P IR +
Sbjct: 354 GGQSGLYALMALFYPTAIRATG 375
Score = 35.0 bits (81), Expect = 0.074
Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 18/140 (12%)
Query: 313 LIATALIDRLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGWLPLLSFVVYVIG 372
L L DR+GR+ +L + ++ F + ++V++L L L+ G
Sbjct: 70 LFFGPLADRIGRRRVL-------LWSILLFSVFTLLCALATNVTQLLILRFLA------G 116
Query: 373 FSIGFGSIPWLM--MGEILPAKIRGSAASLATAFNWTCTFIVTKTFND-LTALLGTHGAF 429
+G G +P L + E P + RG+A L + V L + G F
Sbjct: 117 LGLG-GLMPNLNALVSEYAPKRFRGTAVGLMFC-GYPIGAAVGGFLAGWLIPVFGWRSLF 174
Query: 430 WLFGVVCLVGLFFVIIFVPE 449
++ G+ L+ L ++ F+PE
Sbjct: 175 YVGGIAPLLLLLLLMRFLPE 194
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 46.6 bits (111), Expect = 2e-05
Identities = 77/346 (22%), Positives = 128/346 (36%), Gaps = 75/346 (21%)
Query: 143 WYQLAFFGACIPVPFLICMFL---IPETPRWY--IGRNKQKQARKALQWLRGKDADISRE 197
W L FGA VP L+ ++ IPETPR+ + ++ ++ A L+ K E
Sbjct: 203 WRILIGFGA---VPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEA---E 256
Query: 198 FAEIEKMNNEGNAAEDENSTGCSEVFKAMYMRPLLISIGLMFFQQMSGINAVLASLTVSL 257
E+EK + + S + FK + + LL + G F +A V+L
Sbjct: 257 PDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLD-------IAFYGVNL 309
Query: 258 GSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEDAGSTINENYCTIIVGVVNLLSVLIAT- 316
++ A Y SP + N E Y T V NL+ L T
Sbjct: 310 NQKVILSAIGY-SPPAATNNA----------------YEELYKT---AVGNLIIALAGTV 349
Query: 317 -------ALIDRLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGWLPLLSFVVY 369
L+D +GRK + + + + LG + ST +Y
Sbjct: 350 PGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHG-----------FLAIY 398
Query: 370 VIGF---SIGFGSIPWLMMGEILPAKIRG-----SAAS-------LATAFNWTCTFIVTK 414
V+ + G + +++ GE+ P + R SAAS F +
Sbjct: 399 VLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPT 458
Query: 415 TFNDLTALLGTHGAFWLFGVVCLVGLFFVIIFVPETQGKSLEDIER 460
+G +F + +G+ F ++ +PET+GKSLE++
Sbjct: 459 KGYPTGIWMGH--VLEIFALFMFLGILFTLL-IPETKGKSLEELSG 501
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 42.6 bits (101), Expect = 3e-04
Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 301 TIIVGVVNLLSVLIATALIDRLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGW 360
++ ++ +++ ++ AL DR+GR+ +L I + L + +GS
Sbjct: 261 LMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALL--AVPLLMALLDSGSF-----T 313
Query: 361 LPLLSFVVYVIGFSIGFGSIPWLMMGEILPAKIRGSAASLATAF 404
L + + + G + + E+ P ++R + ASLA
Sbjct: 314 LFFFLVLGMALIGGMYTGPMG-SFLPELFPTEVRYTGASLAYNL 356
Score = 30.7 bits (70), Expect = 1.7
Identities = 38/158 (24%), Positives = 59/158 (37%), Gaps = 20/158 (12%)
Query: 44 FGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMI--------LAGRCVAGFC 95
G + G + +GR+ T++ T L + LLI L I L R + GF
Sbjct: 50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109
Query: 96 VGIASLALPVYLGETVQPEVRGTLGLLPTFLGNIGILTCFIAGTFLNWY--QLAFFGACI 153
+G +YL E P RG G +G+L + L++ A
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGW 169
Query: 154 PVPFLICMFLIP----------ETPRWYIGRNKQKQAR 181
+PFL+ L+ ETP + + K K+ R
Sbjct: 170 RIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKR 207
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 40.8 bits (96), Expect = 0.001
Identities = 36/141 (25%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 38 MPLSALFGGMAG-----GPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVA 92
M L+ G A GPL + GRR +L F +S L +AL+N + +L R V
Sbjct: 44 MTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQ 103
Query: 93 GFCVGIAS-----LALPVYLGETVQPEVRGTLGLLPTFLGNIGILTCFIAGTFLNW-YQL 146
F S L +Y GE + + L + + L +L+W
Sbjct: 104 AFGASAGSVISQALVRDIYPGEELS-RIYSILMPVLALAPAVAPLLGGYILVWLSWHAIF 162
Query: 147 AFFGACIPVPFLICMFLIPET 167
AF + + F++PET
Sbjct: 163 AFLSLAGILLSALIFFILPET 183
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 38.5 bits (90), Expect = 0.006
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 9/113 (7%)
Query: 26 INYIQASWIGSLMPLSALFGGMAGGPLIESLGRRTTILS-----TGLPFIVSFLLIALAN 80
++ ++A ++ SL + G + GG L + L RR L + +V LL+ N
Sbjct: 248 LSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATN 307
Query: 81 GVP---MILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGNIG 130
V LA + F +G ++ + + + + G G L LGN+G
Sbjct: 308 YVNIPYAALALVALGFFGLGAGAIGWAL-ISDNAPGNIAGLTGGLINSLGNLG 359
Score = 33.8 bits (78), Expect = 0.20
Identities = 26/146 (17%), Positives = 53/146 (36%), Gaps = 9/146 (6%)
Query: 303 IVGVVNLLSVLIATALIDRLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGWLP 362
IVG + ++ + L+ R G+ ++ + + + +L F T L
Sbjct: 262 IVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFA----TNYVNIPYAALA 317
Query: 363 LLSFVVYVIGFSIGFGSIPWLMMGEILPAKIRGSAASLATAFNWTCTFIVTKTFNDLTAL 422
L V + F +G G+I W ++ + P I G L + + + A
Sbjct: 318 L----VALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAAT 373
Query: 423 LGTHGAFWLF-GVVCLVGLFFVIIFV 447
G+ + + L+G ++ V
Sbjct: 374 TGSFAGALMVVAALALIGALSYLLLV 399
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 37.9 bits (88), Expect = 0.010
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 7/112 (6%)
Query: 23 DVKINYIQASWIGSLMPLSALFGGMAGGPLIESLGRRTTIL----STGLPFIVSFLLIAL 78
D+ ++ + I + A+ GG G L + LGRR + + L I F A+
Sbjct: 268 DLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVF---AI 324
Query: 79 ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGNIG 130
V ++ G V LP +LGE + R LGN+G
Sbjct: 325 GANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLG 376
Score = 33.7 bits (77), Expect = 0.21
Identities = 37/162 (22%), Positives = 61/162 (37%), Gaps = 11/162 (6%)
Query: 29 IQASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAG 88
+ A+ + S +S FG + G + GRR ++++ + F L A G +
Sbjct: 47 VDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIA 106
Query: 89 RCVAGFCVGIASLALPVYLGETVQPEVRGTL-GLLPTFLGNIGILTCFIAGTFLN----- 142
R V G +G + Y+ E+ +R GLL + ++ + +
Sbjct: 107 RLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDG 166
Query: 143 WYQLAFFGACIPVPFLICMFLIPETPRWYIGRNKQKQARKAL 184
W L F + L IPE W K+K A KAL
Sbjct: 167 WRALFFISILPIIFALWLRKNIPEAEDW-----KEKHAGKAL 203
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 37.2 bits (87), Expect = 0.017
Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 302 IIVGVVNLLSVLIATALIDRLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGWL 361
+ G L+ +++ L+ + G+K L I ++L + L +F T + L
Sbjct: 279 LASGAGLLIGLILWPRLVKKFGKKKLFLI--GLLLLAVGYLLLYF----TPAGSV---VL 329
Query: 362 PLLSFVVYVIGFSIGFGSIPWLMMGEI 388
+++ ++ +G I +PW M+ +
Sbjct: 330 IVVALIIAGVGTGI-ANPLPWAMVADT 355
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 36.8 bits (86), Expect = 0.024
Identities = 22/69 (31%), Positives = 29/69 (42%)
Query: 30 QASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGR 89
A + + L G L L RR +L FIVS LL ALA ++L R
Sbjct: 49 AAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLAR 108
Query: 90 CVAGFCVGI 98
+AG G+
Sbjct: 109 ALAGLAHGV 117
Score = 31.0 bits (71), Expect = 1.5
Identities = 30/135 (22%), Positives = 45/135 (33%), Gaps = 2/135 (1%)
Query: 30 QASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGR 89
S + ++ G + GG L + RR I + L + L + LA
Sbjct: 248 AVSLVLLAFGIAGFIGNLLGGRLADRGPRRALIAALLLLALALLALTFTGASPALALALL 307
Query: 90 CVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGNIGI-LTCFIAGTFLNWYQLAF 148
+ GF A L L P+ G L N+GI L + G L+ A
Sbjct: 308 FLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAA 366
Query: 149 FGACIPVPFLICMFL 163
G L+ + L
Sbjct: 367 TGWVGAALLLLALLL 381
Score = 30.7 bits (70), Expect = 1.9
Identities = 30/150 (20%), Positives = 50/150 (33%), Gaps = 20/150 (13%)
Query: 303 IVGVVNLLSVLIATALIDRLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGWLP 362
+ L + L RL R+ LL + ++ L +
Sbjct: 56 AYALGVALGAPLLALLTGRLERRRLLLG--LLALFIVSNLLSAL-----------APSFA 102
Query: 363 LLSFVVYVIGFSIG-FGSIPWLMMGEILPAKIRGSAASLATAFNWTCTFIV---TKTFND 418
+L + G + G F SI + ++P RG A +L T ++ TF
Sbjct: 103 VLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFT-GLTLATVLGVPLGTF-- 159
Query: 419 LTALLGTHGAFWLFGVVCLVGLFFVIIFVP 448
L L G F V+ L+ L + +P
Sbjct: 160 LGQLFGWRATFLAIAVLALLALLLLWKLLP 189
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 34.9 bits (81), Expect = 0.028
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 5/133 (3%)
Query: 40 LSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIA 99
L L G L + GR+ +L F++S + AL++ + +++ R + GF A
Sbjct: 9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFA 68
Query: 100 SLALPVYLGETVQPEVRG---TLGLLPTFLGNI-GILTCFIAGTFLNWYQLAFFGACIPV 155
+A + + PE RG L LG + G + FL W F A + +
Sbjct: 69 LVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILAL 128
Query: 156 PFLICM-FLIPET 167
I + FL+PET
Sbjct: 129 AAFILLAFLLPET 141
Score = 27.6 bits (62), Expect = 7.9
Identities = 35/153 (22%), Positives = 54/153 (35%), Gaps = 26/153 (16%)
Query: 305 GVVNLLSVLIATALIDRLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGWLPLL 364
+ L+ ++ L DR GRK +L + I L+T L
Sbjct: 8 ALGQLIYSPLSGLLTDRFGRKPVLLVG--LFIFVLSTAMFA------------LSS---- 49
Query: 365 SFVVYVIGFSI-GFGSIPWLMMGEILPAKI-----RGSAASLATAFNWTCTFIVTKTFND 418
+ V +I + GFG+ L+ G L A I RG A L +A ++
Sbjct: 50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGI-ALGPLLGPPLGG 108
Query: 419 -LTALLGTHGAFWLFGVVCLVGLFFVIIFVPET 450
L LG F ++ L + +PET
Sbjct: 109 VLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 34.9 bits (81), Expect = 0.090
Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 30 QASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALA--NGVPMILA 87
S + + ++A+ G L + G++ T L L + +L+ + + L
Sbjct: 258 LFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLV 317
Query: 88 GRCVAGFCVGIASLALPVYLGETV 111
+AG +G+A+L L + V
Sbjct: 318 LVVLAGIGLGLATLLPWAMLADVV 341
Score = 30.6 bits (70), Expect = 1.8
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 10/86 (11%)
Query: 303 IVGVVNLLSVLIATALIDRLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGWLP 362
I + +L + L R G+K + + +F GS WL
Sbjct: 265 IGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAI----GLVLLFFLPPGSL-----WLF 315
Query: 363 LLSFVVYVIGFSIGFGSIPWLMMGEI 388
L+ V+ IG + +PW M+ ++
Sbjct: 316 LVLVVLAGIGLGLATL-LPWAMLADV 340
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 35.0 bits (80), Expect = 0.098
Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 27/170 (15%)
Query: 33 WIGSLMPLSALFGGMAGGPLIESLGRRTTIL-----STGLPFIVSFLLIALANGVPMILA 87
+G ++ L + G G L + LGR+ +L + F SF+ G L
Sbjct: 206 MLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFV-----QGYGFFLF 260
Query: 88 GRCVAGFCVGIASLALPVYLGETVQPEVRGT-LGLLPTFLGNIGILTCFIAGTFL---NW 143
R ++GF +G A + Y E + E RG L L F GI +A + W
Sbjct: 261 CRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGW 320
Query: 144 -------YQLAFFGACIPVPFLICMFLI------PETPRWYIGRNKQKQA 180
YQ + + V C+F I PE+PR+++ K +A
Sbjct: 321 SFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEA 370
Score = 29.2 bits (65), Expect = 5.6
Identities = 37/131 (28%), Positives = 51/131 (38%), Gaps = 23/131 (17%)
Query: 283 VSPTEEEDAG-STINENYCTIIVGVVNLLSVLIATALIDRLGRKILLYISSTAMILTLAT 341
V P+ E+D + +IV + ++ L D+LGRK L I L+
Sbjct: 189 VLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLIC-------LSV 241
Query: 342 LGTFFYFKSTGSDVSELGWLPLLSFVVYVIGFSIGFGSIPWLM--MGEILPAKIRGSAAS 399
G F +F S + LLS GF IG G+IP + E L + RG S
Sbjct: 242 NGFFAFFSSFVQGYGFFLFCRLLS------GFGIG-GAIPIVFSYFAEFLAQEKRGEHLS 294
Query: 400 LATAFNWTCTF 410
W C F
Sbjct: 295 ------WLCMF 299
>gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional.
Length = 434
Score = 34.1 bits (79), Expect = 0.15
Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 38/120 (31%)
Query: 301 TIIVGVVNLLSVLIATALIDRLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGW 360
T+ VGV N + + I AL DR+GR+ +L + ILT
Sbjct: 280 TLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTA--------------------- 318
Query: 361 LPLLSFVVYVIGF----------SIGFGSIPWLMMG---EILPAKIRGS----AASLATA 403
P LS++V F S +GS M+ E++PA++R + A SLATA
Sbjct: 319 YPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATA 378
Score = 30.7 bits (70), Expect = 1.9
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 13/94 (13%)
Query: 33 WIGSLM-PLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMI------ 85
G LM PL A+ G I+ +GRR ++ T LLIA G I
Sbjct: 63 GAGFLMRPLGAIVLG----AYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPL 118
Query: 86 --LAGRCVAGFCVGIASLALPVYLGETVQPEVRG 117
L GR + GF G+ + VYL E P +G
Sbjct: 119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKG 152
>gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter.
The Glycoside-Pentoside-Hexuronide (GPH):Cation
Symporter Family (TC 2.A.2) GPH:cation symporters
catalyze uptake of sugars in symport with a monovalent
cation (H+ or Na+). Members of this family includes
transporters for melibiose, lactose, raffinose,
glucuronides, pentosides and isoprimeverose. Mutants of
two groups of these symporters (the melibiose permeases
of enteric bacteria, and the lactose permease of
Streptococcus thermophilus) have been isolated in which
altered cation specificity is observed or in which sugar
transport is uncoupled from cation symport (i.e.,
uniport is catalyzed). The various members of the family
can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+
as the symported cation. All of these proteins possess
twelve putative transmembrane a-helical spanners
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 437
Score = 33.0 bits (76), Expect = 0.35
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 302 IIVGVVNLLSVLIATALIDRLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGWL 361
I L+ VL+ L+ + GRKIL M+L F+F + L
Sbjct: 264 SIAIGAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYL----IFFFAGSNL------PL 313
Query: 362 PLLSFVVYVIGFSIGFGSIPWLMMGEI 388
L+ ++ G + G + W ++ +
Sbjct: 314 ILVLIILAGFGQNFVTG-LVWALVADT 339
>gnl|CDD|183259 PRK11652, emrD, multidrug resistance protein D; Provisional.
Length = 394
Score = 32.2 bits (74), Expect = 0.67
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 50 GPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVAGFCVGIA 99
GPL + +GRR IL FI+ L+ A+ + +++A + G G+
Sbjct: 64 GPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVG 113
>gnl|CDD|180606 PRK06525, PRK06525, hydrogenase 4 subunit D; Validated.
Length = 479
Score = 31.1 bits (71), Expect = 1.3
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 66 GLPFIVSFLLIALANGVPMILAGRCVAGFCVGIASLAL 103
+++ LL + V L GR A V A+L
Sbjct: 1 ENLALLTLLLPFIGALVVFFLPGRRAAELGVLFAALTT 38
>gnl|CDD|237930 PRK15249, PRK15249, fimbrial chaperone protein StbB; Provisional.
Length = 253
Score = 30.5 bits (69), Expect = 1.4
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 239 FFQQMSGINAVLASLTVSL-GSMIVGFAS-AYTSPAIPSMNQMGSRVSPTEEEDAGSTIN 296
+F +S +N + + +L MI F+S + P S+ V+ T D G+ I+
Sbjct: 186 WFASLSNLNVKVNGASYNLDADMIAPFSSQTWWLPGKRSLKSFSGTVTVTLVNDQGARIS 245
Query: 297 ENY 299
E+Y
Sbjct: 246 ESY 248
>gnl|CDD|235151 PRK03699, PRK03699, putative transporter; Provisional.
Length = 394
Score = 30.7 bits (70), Expect = 2.0
Identities = 36/140 (25%), Positives = 55/140 (39%), Gaps = 19/140 (13%)
Query: 309 LLSVLIATALIDRLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGWLPLLSFVV 368
L+S+ + L++ + K L MI LA G F + S L L S +
Sbjct: 56 LISIFLNAWLMEIIPLKRQLIFGFALMI--LAVAGLMF----SHS-------LALFSIAM 102
Query: 369 YVIGFSIGFG-SIPWLMMGEILPAKIRGSAASLATAFNWTCTFIVTKTFNDLTALLGTHG 427
+V+G G SI ++ + K RGS +F I F + A L
Sbjct: 103 FVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMI----FPIIAAYLLARS 158
Query: 428 AFWLFGVVCLVGLFFVIIFV 447
W + C +GL +V IF+
Sbjct: 159 IEWYWVYAC-IGLVYVAIFI 177
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 30.3 bits (69), Expect = 2.2
Identities = 28/89 (31%), Positives = 40/89 (44%)
Query: 30 QASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGR 89
Q W S L L G + GG L + +GR+ ++ + F + L A A P +L R
Sbjct: 51 QMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVAR 110
Query: 90 CVAGFCVGIASLALPVYLGETVQPEVRGT 118
+ G +G A L E V P +RGT
Sbjct: 111 LLTGVGLGGALPNLIALTSEAVGPRLRGT 139
>gnl|CDD|150220 pfam09475, Dot_icm_IcmQ, Dot/Icm secretion system protein
(dot_icm_IcmQ). Proteins in this entry are the IcmQ
component of Dot/Icm secretion systems, as found in the
obligate intracellular pathogens Legionella pneumophila
and Coxiella burnetii. While this system resembles type
IV secretion systems and has been called a form of type
IV, the literature now seems to favour calling this the
Dot/Icm system. This protein was shown to be essential
for translocation.
Length = 179
Score = 29.6 bits (67), Expect = 2.2
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 277 NQMGSRVSPTEEEDAGSTI-------NENYCTIIVGVVNLLSVLIATALIDRLGRKIL 327
QM SR EED + I NE Y I + ++LSV D+LG+ +L
Sbjct: 90 RQMISRPIYANEEDVKNLIKSKENKINEAYVAIYINQSDILSVSPDKTPTDKLGKPLL 147
>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system;
Provisional.
Length = 377
Score = 30.3 bits (69), Expect = 2.3
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 38 MPLSALFGGMA-----GGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMILAGRCVA 92
M LSA G A GP+ +S GR+ IL L F ++ + ALA + ++ R +
Sbjct: 30 MTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLH 89
Query: 93 GFCVGIAS 100
G AS
Sbjct: 90 GLAAAAAS 97
>gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and
metabolism].
Length = 395
Score = 30.3 bits (69), Expect = 2.4
Identities = 41/172 (23%), Positives = 63/172 (36%), Gaps = 13/172 (7%)
Query: 22 DDVKINYIQASWIGSLMPLSALFGGMAGGPLIESLGRRTTI---LSTGLPFIVSFLLIAL 78
D+ +++ A + +L PL A FG A P L RR L L I + +LI
Sbjct: 40 QDLGLSFSVAGLLTTL-PLLA-FGLFA--PAAPRLARRFGEERSLFLALLLIAAGILIRS 95
Query: 79 ANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGNIGIL----TC 134
G+P++ G +AG + + ++ LP + V GL T LG L
Sbjct: 96 LGGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAV 155
Query: 135 FIAGTFLNWYQLAFFGACIPVPFLICMFLIPETPRWYIGRNKQKQARKALQW 186
+A W F A + L + +P+ R K W
Sbjct: 156 PLAQHSGGWRGALGFWALL--ALLALLIWLPQALREQAASIATKLVSVRKVW 205
>gnl|CDD|185300 PRK15402, PRK15402, multidrug efflux system translocase MdfA;
Provisional.
Length = 406
Score = 30.3 bits (69), Expect = 2.4
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 31 ASWIGSLMPLSALFGGMA----GGPLIESLGRRTTILSTGLPFIVSFLLIALANGVPMIL 86
A W+ + M L GGM GPL + +GRR +L+ FI++ L I LA +
Sbjct: 47 AEWVPTSMTAY-LAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFT 105
Query: 87 AGRCVAG 93
R + G
Sbjct: 106 LLRFLQG 112
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 30.7 bits (70), Expect = 2.5
Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 28/105 (26%)
Query: 361 LPLLSFVVYVIGFSIGFGSIPWLMMGEIL--------PAKIRGS--AASLATAFNWTCTF 410
L + + ++ GFS G +P L P K G AA+ N+
Sbjct: 322 LASVLVLFFLFGFSAGLFIVP-------LNALIQFRAPEKELGKVLAAN-----NF-LQN 368
Query: 411 IVTKTFNDLTAL-----LGTHGAFWLFGVVCLVGLFFVIIFVPET 450
+ F LT L L G F+L +V L+G + ++ +P++
Sbjct: 369 VGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLYTLLLLPDS 413
Score = 30.3 bits (69), Expect = 3.3
Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 6/103 (5%)
Query: 71 VSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGNIG 130
+S L+ A + +L + GF G+ + L + + G + FL N+G
Sbjct: 311 LSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVG 370
Query: 131 ILTCFIAGTFLNWYQLA------FFGACIPVPFLICMFLIPET 167
+L T + L+ + L + L+P++
Sbjct: 371 MLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLYTLLLLPDS 413
>gnl|CDD|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism].
Length = 304
Score = 29.9 bits (68), Expect = 2.7
Identities = 29/145 (20%), Positives = 48/145 (33%), Gaps = 29/145 (20%)
Query: 250 LASLTVSLGSMIVGFASAYTSPAIPSMNQMGSRVSPTEEEDAGSTINENYCTIIVGVVNL 309
LASL VS+ GF AI + +SP E + +I V+
Sbjct: 83 LASLIVSILIFAAGFEILLE--AIKRL------ISPQPVEPPLLAL---GVALISIVIKE 131
Query: 310 LSVLIATALIDRLGRKILLYISSTAM---ILTLATLGTFFYFKSTGSDVSELGWL---PL 363
+ + + L+ + + +LA L LGW PL
Sbjct: 132 ALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLLGSL--------LGWPWLDPL 183
Query: 364 LSFVVYVI----GFSIGFGSIPWLM 384
+ ++ + GF + S+ LM
Sbjct: 184 AALLISLYILKTGFRLFKESVNELM 208
>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport
and metabolism].
Length = 417
Score = 30.3 bits (69), Expect = 2.7
Identities = 31/128 (24%), Positives = 46/128 (35%), Gaps = 7/128 (5%)
Query: 317 ALIDRLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGWLPLLSFVVYVIGFSIG 376
L DR+G + + M L A L F TG + + F+ + +G
Sbjct: 276 WLSDRIGGRRVTLAVFVGMALAAALLSLF----LTGFGHGGSFVVFVAVFLALFVFAGLG 331
Query: 377 FGSIPWLMMGEILPAKIRGSAASLATAFNWTCTFIVTKTFNDLTALLG-THGAFWLFGVV 435
GS+ + M+ I P + G+ + A F + F L G GAF L
Sbjct: 332 NGSV-FKMIPVIFPKET-GAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAF 389
Query: 436 CLVGLFFV 443
LV L
Sbjct: 390 YLVALVLT 397
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 29.9 bits (68), Expect = 3.3
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 12/58 (20%)
Query: 142 NWYQLAFFGACIPVPFLICMFLIPETPRWYIGRNKQKQARKALQWLRGKDADISREFA 199
N+ F + LI ++IG+ K K RKAL W + + FA
Sbjct: 3 NFRLEILF-----LGLLILYIAN-----YFIGKRKNK--RKALAWFKTHKPILESNFA 48
>gnl|CDD|217721 pfam03772, Competence, Competence protein. Members of this family
are integral membrane proteins with 6 predicted
transmembrane helices. Some members of this family have
been shown to be essential for bacterial competence in
uptake of extracellular DNA. These proteins may
transport DNA across the cell membrane. These proteins
contain a highly conserved motif in the amino terminal
transmembrane region that has two histidines that may
form a metal binding site.
Length = 270
Score = 29.1 bits (66), Expect = 4.2
Identities = 27/144 (18%), Positives = 50/144 (34%), Gaps = 16/144 (11%)
Query: 312 VLIATALIDRLGRKILLYISSTAMILTLATLGT------FFYFKSTGSDVSELGWLPLLS 365
+L+A L RL R ++ ++ A L T F S S ++ L +PL+S
Sbjct: 135 LLLAPRLQKRLSRLSPRLLALLLLVSLAAQLATLPLLLYHFGQFSLVSLLANLLAVPLVS 194
Query: 366 FVVYVIGFSIGFGSIPWLMMGEILPAKIRGSAASLATAFNWTCTFIVTKTFNDLTALLGT 425
FVV + S+ + +L A L + + L
Sbjct: 195 FVVLPLALLALLLSLFPPLAALLLWL-----ADWLLELLLA-----LLEWLASLPGASLW 244
Query: 426 HGAFWLFGVVCLVGLFFVIIFVPE 449
G L+ ++ L +++ +
Sbjct: 245 VGRPSLWLLLLYYLLLLLLLLLLL 268
>gnl|CDD|236165 PRK08147, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 547
Score = 29.6 bits (67), Expect = 4.2
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 240 FQQMSGINAVLASLTVSLGSMIVGFAS 266
++QMS I+ +L+ T SL + + F +
Sbjct: 89 YEQMSKIDNLLSDSTNSLSTTMQDFFT 115
>gnl|CDD|223724 COG0651, HyfB, Formate hydrogenlyase subunit 3/Multisubunit Na+/H+
antiporter, MnhD subunit [Energy production and
conversion / Inorganic ion transport and metabolism].
Length = 504
Score = 28.9 bits (65), Expect = 7.4
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 1/76 (1%)
Query: 302 IIVGVVNLLSVLIATALIDRLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGWL 361
++ ++ LL+ + + K +++ + L F GWL
Sbjct: 6 LLPIILPLLAAALLLLFLGLRRLKAKRFLALLGALGLLLLSILGFLEVGGPVGGL-GGWL 64
Query: 362 PLLSFVVYVIGFSIGF 377
V+ S F
Sbjct: 65 APFGIVLAADPLSAIF 80
>gnl|CDD|222559 pfam14126, DUF4293, Domain of unknown function (DUF4293). This
family of integral membrane proteins is functionally
uncharacterized. This family of proteins is found in
bacteria. Proteins in this family are typically between
136 and 154 amino acids in length.
Length = 111
Score = 27.5 bits (62), Expect = 7.6
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 21/86 (24%)
Query: 302 IIVGVVNLLSVLIA-TALIDRLGRKILLY--------ISSTAMILTLATLGTFFYFKSTG 352
++ V LL VL A AL+ I L+ + ++L L LG F YF
Sbjct: 13 ALLAGVLLLLVLSALLALV-----AIFLFKNRKLQIRLCRLNILLNLGLLGLFAYFFLNL 67
Query: 353 SD----VSELGW---LPLLSFVVYVI 371
S E G LPL++ ++ +
Sbjct: 68 SGETGATFEKGIGLFLPLVAIILLWL 93
>gnl|CDD|187654 cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13 ketoreductase
(KR), classical (c)-like SDRs. Daunorubicin is a
clinically important therapeutic compound used in some
cancer treatments. Daunorubicin C-13 ketoreductase is
member of the classical SDR family with a canonical
glycine-rich NAD(P)-binding motif, but lacking a
complete match to the active site tetrad characteristic
of this group. The critical Tyr, plus the Lys and
upstream Asn are present, but the catalytic Ser is
replaced, generally by Gln. SDRs are a functionally
diverse family of oxidoreductases that have a single
domain with a structurally conserved Rossmann fold
(alpha/beta folding pattern with a central beta-sheet),
an NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Classical SDRs are typically about
250 residues long, while extended SDRs are approximately
350 residues. Sequence identity between different SDR
enzymes are typically in the 15-30% range, but the
enzymes share the Rossmann fold NAD-binding motif and
characteristic NAD-binding and catalytic sequence
patterns. These enzymes catalyze a wide range of
activities including the metabolism of steroids,
cofactors, carbohydrates, lipids, aromatic compounds,
and amino acids, and act in redox sensing. Classical
SDRs have an TGXXX[AG]XG cofactor binding motif and a
YXXXK active site motif, with the Tyr residue of the
active site motif serving as a critical catalytic
residue (Tyr-151, human prostaglandin dehydrogenase
(PGDH) numbering). In addition to the Tyr and Lys, there
is often an upstream Ser (Ser-138, PGDH numbering)
and/or an Asn (Asn-107, PGDH numbering) contributing to
the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G
NAD(P)-binding motif. Some atypical SDRs have lost
catalytic activity and/or have an unusual NAD(P)-binding
motif and missing or unusual active site residues.
Reactions catalyzed within the SDR family include
isomerization, decarboxylation, epimerization, C=N bond
reduction, dehydratase activity, dehalogenation,
Enoyl-CoA reduction, and carbonyl-alcohol
oxidoreduction.
Length = 260
Score = 28.2 bits (63), Expect = 7.8
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 307 VNLLSVLIATALIDRLGRKILLYISSTAMILTLATLGTFFYFKSTGSD 354
VN+L+ + TALI R R L+Y+SS A+L +F +D
Sbjct: 109 VNVLAPYVLTALIRRPKR--LIYLSSGMHRGGNASLDDIDWFNRGEND 154
>gnl|CDD|236319 PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 589
Score = 28.8 bits (65), Expect = 7.9
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 40 LSALFGGMAGGP----LIESLGRRTTILSTGL 67
LSA++GGM GP I+ LG+ +S+ +
Sbjct: 393 LSAIYGGMVAGPNAVEYIKGLGKSADDVSSSV 424
>gnl|CDD|183487 PRK12382, PRK12382, putative transporter; Provisional.
Length = 392
Score = 28.5 bits (64), Expect = 8.0
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 71 VSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGT-LGLLPTFL 126
V LL+ LA + LAG + G + AL V + + V +VRGT LG F
Sbjct: 291 VGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQ 347
>gnl|CDD|182611 PRK10642, PRK10642, proline/glycine betaine transporter;
Provisional.
Length = 490
Score = 28.5 bits (64), Expect = 8.0
Identities = 37/123 (30%), Positives = 51/123 (41%), Gaps = 28/123 (22%)
Query: 289 EDAGSTINENYCTIIVGVVNLLSVLIATALI-DRLGRKILLYISSTA-MILTLATLGTFF 346
ED G I II ++ +L V L+ DR GR+ + + S A +L +
Sbjct: 285 EDHGVLI------IIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPA----- 333
Query: 347 YFKSTGSDVSELGWLPLLSFVVYVIGFSIGFGSIPWLMMGEILPA----KIRGSAASLAT 402
F S+V L + LL V ++ G +M LPA IR SA LA
Sbjct: 334 -FILINSNVIGLIFAGLLMLAV-ILNCFTG-------VMASTLPAMFPTHIRYSA--LAA 382
Query: 403 AFN 405
AFN
Sbjct: 383 AFN 385
>gnl|CDD|220915 pfam10961, DUF2763, Protein of unknown function (DUF2763). This
eukaryotic family of proteins has no known function.
Length = 91
Score = 26.6 bits (59), Expect = 9.6
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 429 FWLFGVVCLVGLFFVIIFVPE------TQGKSLEDIERNLTGGGSPDGGPRV 474
FW G++ + LFF +F P+ S + + G G P GG R+
Sbjct: 25 FW--GILNFISLFFRTMFSPDVTKRYRKNSSSGKRWDGGRGGPGPPGGGRRM 74
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.141 0.428
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,271,298
Number of extensions: 2565272
Number of successful extensions: 4882
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4770
Number of HSP's successfully gapped: 316
Length of query: 483
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 382
Effective length of database: 6,457,848
Effective search space: 2466897936
Effective search space used: 2466897936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.2 bits)