RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6142
(483 letters)
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
coli [TaxId: 562]}
Length = 447
Score = 65.1 bits (157), Expect = 6e-12
Identities = 47/441 (10%), Positives = 120/441 (27%), Gaps = 68/441 (15%)
Query: 30 QASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLI----ALANGVPMI 85
+ S + ++ F G + + R + + + L + + + ++
Sbjct: 60 DLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVM 119
Query: 86 LAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGNIG-----ILTCFIAGTF 140
+ G+ G+ + + RG + + N+G +L F
Sbjct: 120 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 179
Query: 141 LNWYQLAFFGACIPVPFLICMFLIPETPRWYIGRNKQKQARKALQWLRGKDADISREFAE 200
+W+ + A + + F + G ++ + + A+ +
Sbjct: 180 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQ 239
Query: 201 IEKMNNEGNAAEDENSTGCSEVFKAMYMRPLLISIGLMFFQQMSGINAVLASLTVSLGSM 260
I + + LL I + +L
Sbjct: 240 I--------------------FMQYVLPNKLLWYIAIANVFVYLLRYGILDWS------- 272
Query: 261 IVGFASAYTSPAIPSMNQMGSRVSPTEEEDAGSTINENYCTIIVGVVNLLSVLIATALID 320
P+ + + + ++ + + L+ + D
Sbjct: 273 -------------PTYLKEVKHFALDK---------SSWAYFLYEYAGIPGTLLCGWMSD 310
Query: 321 RLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGWLPLLSFVVYVIGFSI-GFGS 379
++ R M L ++ + + + VIGF I G
Sbjct: 311 KVFRGNRGATGVFFMTLVTIATIVYWMNPAG--------NPTVDMICMIVIGFLIYGPVM 362
Query: 380 IPWLMMGEILPAKIRGSAASLATAFNWTCTFIVTKTF-NDLTALLGTHGAFWLFGVVCLV 438
+ L E+ P K G+AA F + + G G F + ++
Sbjct: 363 LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSIL 422
Query: 439 GLFFVIIFVPETQGKSLEDIE 459
+ +I+ + + + + ++
Sbjct: 423 AVILLIVVMIGEKRRHEQLLQ 443
Score = 35.0 bits (79), Expect = 0.017
Identities = 24/166 (14%), Positives = 53/166 (31%), Gaps = 7/166 (4%)
Query: 11 HSRIDANYNEYDDVKINYIQASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFI 70
+ K ++ + + +P + L G M+ + G T +
Sbjct: 272 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA 331
Query: 71 VSFLLIALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGTLGLLPTFLGNIG 130
+ A + + V GF + + + ++ E + GT G +G
Sbjct: 332 TIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLG 391
Query: 131 --ILTCFIAGTFLNWYQ-----LAFFGACIPVPFLICMFLIPETPR 169
+ I G ++++ + G I L+ + +I E R
Sbjct: 392 GSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRR 437
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
562]}
Length = 417
Score = 38.2 bits (87), Expect = 0.002
Identities = 27/175 (15%), Positives = 46/175 (26%), Gaps = 10/175 (5%)
Query: 22 DDVKINYIQASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLIALANG 81
D I+ I + + L +L G L + LG R +L +V F +
Sbjct: 36 DINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIF 95
Query: 82 VPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRG----------TLGLLPTFLGNIGI 131
P++ V GI V+ + + +G
Sbjct: 96 GPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGA 155
Query: 132 LTCFIAGTFLNWYQLAFFGACIPVPFLICMFLIPETPRWYIGRNKQKQARKALQW 186
I T N + C + ++ F + P N A
Sbjct: 156 SIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSL 210
Score = 31.3 bits (69), Expect = 0.25
Identities = 14/158 (8%), Positives = 44/158 (27%), Gaps = 5/158 (3%)
Query: 17 NYNEYDDVKINYIQASWIGSLMPLSALFGGMAGGPLIESLGRRTTILSTGLPFIVSFLLI 76
+ + + ++ ++ L +I +G + +L G V +
Sbjct: 247 FTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS 306
Query: 77 ALANGVPMILAGRCVAGFCVGIASLALPVYLGETVQPEVRGT-LGLLPTFLGNIGILTCF 135
+ A ++ + + F V + Y+ + T + F + ++
Sbjct: 307 SFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMS 366
Query: 136 IAGTFL----NWYQLAFFGACIPVPFLICMFLIPETPR 169
+ + + + + F + P
Sbjct: 367 VLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404
Score = 30.9 bits (68), Expect = 0.39
Identities = 22/148 (14%), Positives = 45/148 (30%), Gaps = 7/148 (4%)
Query: 303 IVGVVNLLSVLIATALIDRLGRKILLYISSTAMILTLATLGTFFYFKSTGSDVSELGWLP 362
+ + +LL + L D+LG + L T M++ A F + L +
Sbjct: 51 AISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPL-------LQYNI 103
Query: 363 LLSFVVYVIGFSIGFGSIPWLMMGEILPAKIRGSAASLATAFNWTCTFIVTKTFNDLTAL 422
L+ +V I F + + I R + + + + +
Sbjct: 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT 163
Query: 423 LGTHGAFWLFGVVCLVGLFFVIIFVPET 450
+ FWL L+ + +
Sbjct: 164 INNQFVFWLGSGCALILAVLLFFAKTDA 191
Score = 29.0 bits (63), Expect = 1.3
Identities = 10/89 (11%), Positives = 29/89 (32%), Gaps = 5/89 (5%)
Query: 360 WLPLLSFVVYVIGFSIGFGSIPWLMMGEILPAKIRGSAASLATAF-NWTCTFIVTKTFND 418
++ +++ + + + + + F ++ +
Sbjct: 313 LEVVILKTLHMFEVPFLLVGC-FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGN 371
Query: 419 LTALLGTHGAFWLFGVVCLVGLFFVIIFV 447
+ +G GA+ + G+V L F +I V
Sbjct: 372 MYESIGFQGAYLVLGLVALG---FTLISV 397
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.141 0.428
Gapped
Lambda K H
0.267 0.0490 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,757,180
Number of extensions: 80314
Number of successful extensions: 243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 17
Length of query: 483
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 394
Effective length of database: 1,185,626
Effective search space: 467136644
Effective search space used: 467136644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.5 bits)