BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy615
(962 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 306 bits (785), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 169/505 (33%), Positives = 278/505 (55%), Gaps = 15/505 (2%)
Query: 465 IAIIGMSGRFPAARNINE-FWKILINNKDVISEIP-EKIFDW-KLYYENPIKSSNKINSK 521
IAI+ M+ R P N + W++L + +S P ++ +D +L++ +P K
Sbjct: 8 IAIVSMACRLPGGVNTPQRLWELLREGGETLSGFPTDRGWDLARLHHPDPDNPGTSYVDK 67
Query: 522 WYGSIPGIDEFDPLFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQKIGMFV 581
G + FD FF +SP EA MDP+QR LL+ SW +E+AG P+ + G+F+
Sbjct: 68 -GGFLDDAAGFDAEFFGVSPREAAAMDPQQRLLLETSWELVENAGIDPHSLRGTATGVFL 126
Query: 582 GVE-----EGSNYQDRLDQVNLTSTHNAILSARLAYFMDLKGPVMAINTACSSSLVATHI 636
GV E + + ++ ++T A+ S R++Y M L+GP ++++TACSSSLVA H+
Sbjct: 127 GVAKFGYGEDTAAAEDVEGYSVTGVAPAVASGRISYTMGLEGPSISVDTACSSSLVALHL 186
Query: 637 ACQSLRQHECDTAISAGVNLMISPEAYIAMTSAGMLSPDGKCYVFDERANGLVPSEAVVA 696
A +SLR+ E A+ G +M +P ++ + L+ DG+ F A+G SE V
Sbjct: 187 AVESLRKGESSMAVVGGAAVMATPGVFVDFSRQRALAADGRSKAFGAGADGFGFSEGVTL 246
Query: 697 VVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAPNGISQTELIKSVYKKSNLNPEDI 756
V+L+RLS A +G + A++RGS +N DG +NG++AP+G +Q +I+ + L P D+
Sbjct: 247 VLLERLSEARRNGHEVLAVVRGSALNQDGASNGLSAPSGPAQRRVIRQALESCGLEPGDV 306
Query: 757 NYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAITSNKSNIGHTFAASGLVSLINLV 816
+ + HGTGT LGDP+E NAL D + + + S KSNIGHT AA+G+ L+ +V
Sbjct: 307 DAVEAHGTGTALGDPIEANALLDTYGRDRDADRPLWLGSVKSNIGHTQAAAGVTGLLKVV 366
Query: 817 QSIKYKIIPASLHCEKENNYIILKNSPFYINKSNKKWNTVNEKLRIGAVSAFGMSGTNAH 876
+++ +PA+LH E+ ++ + + N+ W E+ R AVSAFG+SGTNAH
Sbjct: 367 LALRNGELPATLHVEEPTPHVDWSSGGVALLAGNQPWRR-GERTRRAAVSAFGISGTNAH 425
Query: 877 IVLQEYISTNFKNIKNNTFISSNPYHMVVLSAKTKISLKEKMKQILLFLRKNNTVCIENF 936
++++E + + T P +VV SA++ +L+ + QI L + + +
Sbjct: 426 VIVEEAPE---REHRETTAHDGRPVPLVV-SARSTAALRAQAAQIAELLERPDA-DLAGV 480
Query: 937 VYTLMQGRHHFQYRCAIIISSIEEV 961
L R ++R A++ S+ EE
Sbjct: 481 GLGLATTRARHEHRAAVVASTREEA 505
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 293 bits (751), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 164/515 (31%), Positives = 273/515 (53%), Gaps = 27/515 (5%)
Query: 455 KNTDINSEELIAIIGMSGRFPAARNINE-FWKILINNKDVISEIPEKIFDWKLYYENPIK 513
+ + + E IAI+G + RFP + E FW+ + D I+E P + + +P
Sbjct: 31 REVEHRAGEPIAIVGXACRFPGDVDSPESFWEFVSGGGDAIAEAPAD----RGWEPDP-- 84
Query: 514 SSNKINSKWYGSIPGIDEFDPLFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIA 573
+++ G + +FD FF ISP EA DP+QR L+ SW ALE AG+ P +
Sbjct: 85 -----DARLGGXLAAAGDFDAGFFGISPREALAXDPQQRIXLEISWEALERAGHDPVSLR 139
Query: 574 NQKIGMFVGVEEGSNYQDRLDQVN-------LTSTHNAILSARLAYFMDLKGPVMAINTA 626
G+F GV +Y R D+ T T +++ S R+AY + L+GP ++TA
Sbjct: 140 GSATGVFTGVGT-VDYGPRPDEAPDEVLGYVGTGTASSVASGRVAYCLGLEGPAXTVDTA 198
Query: 627 CSSSLVATHIACQSLRQHECDTAISAGVNLMISPEAYIAMTSAGMLSPDGKCYVFDERAN 686
CSS L A H+A +SLR+ EC A++ GV + SP A+ S G L+ DG+C F + A+
Sbjct: 199 CSSGLTALHLAXESLRRDECGLALAGGVTVXSSPGAFTEFRSQGGLAADGRCKPFSKAAD 258
Query: 687 GLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAPNGISQTELIKSVY 746
G +E +VL+RLS A +G P+ A++RGS +N DG +NG+TAP+G +Q +I+
Sbjct: 259 GFGLAEGAGVLVLQRLSAARREGRPVLAVLRGSAVNQDGASNGLTAPSGPAQQRVIRRAL 318
Query: 747 KKSNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAITSNKSNIGHTFAA 806
+ + + D++Y+ HGTGT+LGDP+E++AL + + I S KSNIGHT AA
Sbjct: 319 ENAGVRAGDVDYVEAHGTGTRLGDPIEVHALLSTYGAERDPDDPLWIGSVKSNIGHTQAA 378
Query: 807 SGLVSLINLVQSIKYKIIPASLHCEKENNYIILKNSPFYINKSNKKWNTVNEKLRIGAVS 866
+G+ + V ++++ P +LH ++ + I + + W E+ R VS
Sbjct: 379 AGVAGVXKAVLALRHGEXPRTLHFDEPSPQIEWDLGAVSVVSQARSW-PAGERPRRAGVS 437
Query: 867 AFGMSGTNAHIVLQEYISTNFKNIKNNTFISSNPYHMVVLSAKTKISLKEKMKQILLFLR 926
+FG+SGTNAH++ + + + S P + VLS + + + + + ++ L
Sbjct: 438 SFGISGTNAHVI----VEEAPEADEPEPAPDSGPVPL-VLSGRDEQAXRAQAGRLADHLA 492
Query: 927 KNNTVCIENFVYTLMQGRHHFQYRCAIIISSIEEV 961
+ + + +TL R +++R A+++ +E
Sbjct: 493 REPRNSLRDTGFTLATRRSAWEHR-AVVVGDRDEA 526
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 241 bits (615), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 146/434 (33%), Positives = 232/434 (53%), Gaps = 40/434 (9%)
Query: 460 NSEELIAIIGMSGRFPAARNINEFWKILINNKDVISEIPEKIFDWKL-YYENPIKSSNKI 518
++ E + I GMSG+ P + N+ EFW LI D++++ + WK Y P +S
Sbjct: 1 STGEEVVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDDRR---WKAGLYGLPRRS---- 53
Query: 519 NSKWYGSIPGIDEFDPLFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQKIG 578
G + + FD FF + P +A MDP+ R LL+ ++ A+ D G P+ + G
Sbjct: 54 -----GKLKDLSRFDASFFGVHPKQAHTMDPQLRLLLEVTYEAIVDGGINPDSLRGTHTG 108
Query: 579 MFVGVEEGSNYQDRLDQ-------VNLTSTHNAILSARLAYFMDLKGPVMAINTACSSSL 631
++VGV GS + L + ++ A+++ RL++F D +GP +A++TACSSSL
Sbjct: 109 VWVGVS-GSETSEALSRDPETLVGYSMVGCQRAMMANRLSFFFDFRGPSIALDTACSSSL 167
Query: 632 VATHIACQSLRQHECDTAISAGVNLMISPEAYIAMTSAGMLSPDGKCYVFDERANGLVPS 691
+A A Q++ +C AI G+N+++ P + GMLSP+G C FD NG S
Sbjct: 168 MALQNAYQAIHSGQCPAAIVGGINVLLKPNTSVQFLRLGMLSPEGTCKAFDTAGNGYCRS 227
Query: 692 EAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDG-KTNGITAPNGISQTELIKSVYKKSN 750
E VVAV+L + S A ++A I +G N DG K G+T P+G Q +LI+S+Y+ +
Sbjct: 228 EGVVAVLLTKKSLARR----VYATILNAGTNTDGFKEQGVTFPSGDIQEQLIRSLYQSAG 283
Query: 751 LNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAITSNKSNIGHTFAASGLV 810
+ PE YI HGTGTK+GDP E+N + Q+ I S KSN+GH ASGL
Sbjct: 284 VAPESFEYIEAHGTGTKVGDPQELNGITRAL--CATRQEPLLIGSTKSNMGHPEPASGLA 341
Query: 811 SLINLVQSIKYKIIPASLHCEKENNYIILKNSPFYINKSNKKWNTVNEKLRIG----AVS 866
+L ++ S+++ + +LH N I P + + + V++ L + ++
Sbjct: 342 ALAKVLLSLEHGLWAPNLHFHSPNPEI-----PALL---DGRLQVVDQPLPVRGGNVGIN 393
Query: 867 AFGMSGTNAHIVLQ 880
+FG G+N HI+L+
Sbjct: 394 SFGFGGSNVHIILR 407
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 235 bits (599), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/430 (33%), Positives = 224/430 (52%), Gaps = 38/430 (8%)
Query: 463 ELIAIIGMSGRFPAARNINEFWKILINNKDVISEIPEKIFDWKL-YYENPIKSSNKINSK 521
E + I GMSG+ P + N+ EFW LI D+++ + WK Y P +
Sbjct: 2 EEVVIAGMSGKLPESENLEEFWANLIGGVDMVTADDRR---WKAGLYGLPRR-------- 50
Query: 522 WYGSIPGIDEFDPLFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQKIGMFV 581
G + + FD FF + +A MDP+ R LL+ ++ A+ D G P + G++V
Sbjct: 51 -MGKLKDLSRFDASFFGVHSKQANTMDPQLRMLLEVTYEAIVDGGINPASLRGTSTGVWV 109
Query: 582 GV------EEGSNYQDRLDQVNLTSTHNAILSARLAYFMDLKGPVMAINTACSSSLVATH 635
GV E S + L ++ A+++ RL++F D KGP + I+TACSSSL+A
Sbjct: 110 GVSSSDASEALSRDPETLVGYSMIGCQRAMMANRLSFFFDFKGPSITIDTACSSSLLALQ 169
Query: 636 IACQSLRQHECDTAISAGVNLMISPEAYIAMTSAGMLSPDGKCYVFDERANGLVPSEAVV 695
A Q++R EC A+ G+N+++ P + + GMLS DG C FD G +EAVV
Sbjct: 170 SAYQAIRGGECSAAVVGGLNVLLKPNSSLQFMKLGMLSQDGTCRSFDAEGTGYCRAEAVV 229
Query: 696 AVVLKRLSRALSDGDPIHAIIRGSGINYDG-KTNGITAPNGISQTELIKSVYKKSNLNPE 754
AV+L + S A ++A I +G N DG K G+T P+G Q +LI+S+Y + +PE
Sbjct: 230 AVLLTKKSLARR----VYATILNAGTNTDGSKEQGVTFPSGDVQEQLIRSLYAPAGPDPE 285
Query: 755 DINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAITSNKSNIGHTFAASGLVSLIN 814
+ YI HGTGTK+GDP E+N + + ++ I S KSN+GH ASG+ +LI
Sbjct: 286 SLEYIEAHGTGTKVGDPQELNGIVNAL--CATRREPLLIGSTKSNMGHPEPASGVAALIK 343
Query: 815 LVQSIKYKIIPASLHCEKENNYIILKNSPFYINKSNKKWNTVNEKLRIG----AVSAFGM 870
++ S+++ + +LH N P + + V+ L I +++FG
Sbjct: 344 VLLSLEHGVWAPNLHYHTPN--------PEIPALQDGRLQVVDRPLPIRGGNVGINSFGF 395
Query: 871 SGTNAHIVLQ 880
G+N H++LQ
Sbjct: 396 GGSNVHVILQ 405
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 11/179 (6%)
Query: 51 NIKSIILKDFKNSYIKQGGTYLITGGTGRLGMLFSDYLINKYSTNLILSGRSKLNS-IIY 109
+ I L ++ +Y+ITGG G G+ + +L + + L+L+ RS + +
Sbjct: 1867 GLPPIALTGLSKTFCPPHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQA 1926
Query: 110 KKLKKFNNKAIYIQVDVSD--KLKMXXXXXXXXXXXGPIDGVLHIAGISGLTSNILEANY 167
++++++ + + + V S+ L GP+ GV ++A + L +LE
Sbjct: 1927 RQVREWRRQGVQVLVSTSNASSLDGARSLITEATQLGPVGGVFNLAMV--LRDAVLENQT 1984
Query: 168 KNFYSVLS-SKISGTIALNYALENTILKLQKNKLDFVCYFSSSSAILGDFGSCDYAMGN 225
F+ +S K SGT L+ +LD+ FSS S G+ G +Y N
Sbjct: 1985 PEFFQDVSKPKYSGTANLDRVTREAC-----PELDYFVIFSSVSCGRGNAGQANYGFAN 2038
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWY|B Chain B, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWZ|A Chain A, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
pdb|2IWZ|B Chain B, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
Length = 438
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 159/345 (46%), Gaps = 41/345 (11%)
Query: 560 LALEDAGYGPNQIANQ-KIGMFVGV---------EEGSNYQ----DRLDQVNLTSTHNAI 605
LA++D+G+ P A+Q G+ +G+ E N+Q +++ + +
Sbjct: 107 LAMKDSGWHPQSEADQVATGVAIGMGMIPLEVVSETALNFQTKGYNKVSPFFVPKILVNM 166
Query: 606 LSARLAYFMDLKGPVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLMISPEAYIA 665
+ +++ LKGP A++TAC++ A + + + + D ++ G + ISP +
Sbjct: 167 AAGQVSIRYKLKGPNHAVSTACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAG 226
Query: 666 MTSAGMLS----PDGKCYVFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGI 721
+ A LS P C F + +G V E +VL+ A+ I+A + G G+
Sbjct: 227 FSRARALSTNSDPKLACRPFHPKRDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGL 286
Query: 722 NYDGKTNGITAPN--GISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHD 779
+ G ITAP+ G + + K + + PE+I+YI H T T LGD E A+
Sbjct: 287 S--GDAGHITAPDPEGEGALRCMAAALKDAGVQPEEISYINAHATSTPLGDAAENKAIKH 344
Query: 780 VFKNKTYNQKFCAITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPASLH--CEKEN--- 834
+FK+ Y A++S K GH A+G V + Y+ +P +L+ C +
Sbjct: 345 LFKDHAYA---LAVSSTKGATGHLLGAAGAVEAAFTTLACYYQKLPPTLNLDCSEPEFDL 401
Query: 835 NYIILKNSPFYINKSNKKWNTVNEKLRIGAVSAFGMSGTNAHIVL 879
NY+ LK ++W T EK IG ++FG GTNA + +
Sbjct: 402 NYVPLK---------AQEWKT--EKRFIGLTNSFGFGGTNATLCI 435
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase
Length = 444
Score = 106 bits (265), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 158/345 (45%), Gaps = 41/345 (11%)
Query: 560 LALEDAGYGPNQIANQ-KIGMFVGV---------EEGSNYQ----DRLDQVNLTSTHNAI 605
LA++D+G+ P A+Q G+ +G+ E N+Q +++ + +
Sbjct: 113 LAMKDSGWHPQSEADQVATGVAIGMGMIPLEVVSETALNFQTKGYNKVSPFFVPKILVNM 172
Query: 606 LSARLAYFMDLKGPVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLMISPEAYIA 665
+ +++ LKGP A++TA ++ A + + + + D ++ G + ISP +
Sbjct: 173 AAGQVSIRYKLKGPNHAVSTAXTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAG 232
Query: 666 MTSAGMLS----PDGKCYVFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGI 721
+ A LS P C F + +G V E +VL+ A+ I+A + G G+
Sbjct: 233 FSRARALSTNSDPKLACRPFHPKRDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGL 292
Query: 722 NYDGKTNGITAPN--GISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHD 779
+ G ITAP+ G + + K + + PE+I+YI H T T LGD E A+
Sbjct: 293 S--GDAGHITAPDPEGEGALRCMAAALKDAGVQPEEISYINAHATSTPLGDAAENKAIKH 350
Query: 780 VFKNKTYNQKFCAITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPASLH--CEKEN--- 834
+FK+ Y A++S K GH A+G V + Y+ +P +L+ C +
Sbjct: 351 LFKDHAYA---LAVSSTKGATGHLLGAAGAVEAAFTTLACYYQKLPPTLNLDCSEPEFDL 407
Query: 835 NYIILKNSPFYINKSNKKWNTVNEKLRIGAVSAFGMSGTNAHIVL 879
NY+ LK ++W T EK IG ++FG GTNA + +
Sbjct: 408 NYVPLK---------AQEWKT--EKRFIGLTNSFGFGGTNATLCI 441
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 137/322 (42%), Gaps = 27/322 (8%)
Query: 543 EAERMDPRQRHLLQESWLALEDAGYGPNQIANQKIGMFVG----------------VEEG 586
E R+D ++ L + LALEDAG P + +++G VG +E G
Sbjct: 64 ELRRLDRFVQYALIAAQLALEDAGLKPEDLDPERVGTLVGTGIGGMETWEAQSRVFLERG 123
Query: 587 SNYQDRLDQVNLTSTHNAILSARLAYFMDLKGPVMAINTACSSSLVATHIACQSLRQHEC 646
N R+ + + SA +A GP + TAC++ A A + ++ E
Sbjct: 124 PN---RISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGADALGSALRMIQLGEA 180
Query: 647 DTAISAGVNLMISPEAYIAMTSAGMLS-----PDGKCYVFDERANGLVPSEAVVAVVLKR 701
D ++ G I+P A A LS P+ F +G V E +VL+
Sbjct: 181 DLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGVLVLEA 240
Query: 702 LSRALSDGDPIHAIIRGSGINYDGKTNGITAPNGISQTELIKSVYKKSNLNPEDINYIIT 761
A G I+A + G G + D P G + K + + PE + YI
Sbjct: 241 YEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYINA 300
Query: 762 HGTGTKLGDPVEINALHDVFKNKTYNQKFCAITSNKSNIGHTFAASGLVSLINLVQSIKY 821
HGT T +GD E+ A+ VF + + K ++S KS IGH A+G V I VQ++ +
Sbjct: 301 HGTSTPVGDRAEVLAIKRVFGD---HAKRLMVSSTKSMIGHLLGAAGAVEAIATVQALYH 357
Query: 822 KIIPASLHCEKENNYIILKNSP 843
+IP +++ E + + L P
Sbjct: 358 GVIPPTINLEDPDPELDLDFVP 379
>pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|C Chain C, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|E Chain E, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|G Chain G, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 424
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 100/445 (22%), Positives = 186/445 (41%), Gaps = 61/445 (13%)
Query: 465 IAIIGMSGRFPAARNINEFWKILINNKDVISEIPEKIFDWKLYYENPIKSSNKINSKWYG 524
+ I G+ R P +FW++L + + I FD +P +S +
Sbjct: 5 VVITGVGVRAPGGNGTRQFWELLTSGRTATRRI--SFFD-----PSPYRSQVAAEA---- 53
Query: 525 SIPGIDEFDPLFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQKIGMFVGV- 583
+FDP+ P E +RMD + + + A +G P+ + ++G+ +G
Sbjct: 54 ------DFDPVAEGFGPRELDRMDRASQFAVACAREAFAASGLDPDTLDPARVGVSLGSA 107
Query: 584 ---------------EEGSNYQDRLDQVNLTSTH------NAILSARLAYFMDLKGPVMA 622
+ G +++ +D L S H +++ A +A+ + +GPV
Sbjct: 108 VAAATSLEREYLLLSDSGRDWE--VDAAWL-SRHMFDYLVPSVMPAEVAWAVGAEGPVTM 164
Query: 623 INTACSSSLVATHIACQSLRQHECDTAISAGVNLMISPEAY-----IAMTSAGMLSPDGK 677
++T C+S L + A +++ + D + + I+P I T+A P+
Sbjct: 165 VSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARNDDPEHA 224
Query: 678 CYVFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDG-KTNGITAPNGI 736
FD +G V +E VL+ AL+ G IHA I G + G+ A +G
Sbjct: 225 SRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKA-DGR 283
Query: 737 SQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAITSN 796
E I+ +S + DI+YI HG+GT+ D E A + + ++S
Sbjct: 284 EMAETIRVALDESRTDATDIDYINAHGSGTRQNDRHETAAYKRALGE---HARRTPVSSI 340
Query: 797 KSNIGHTFAASGLVSLINLVQSIKYKIIPASLHCEKENNYIILKNSPFYINKSNKKWNTV 856
KS +GH+ A G + + V ++++ ++P + + + L P + +K +V
Sbjct: 341 KSMVGHSLGAIGSLEIAACVLALEHGVVPPTANLRTSDPECDLDYVP--LEARERKLRSV 398
Query: 857 NEKLRIGAVSAFGMSGTNAHIVLQE 881
L +G S FG G + +VL++
Sbjct: 399 ---LTVG--SGFG--GFQSAMVLRD 416
>pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii)
From Synechocystis Sp
Length = 416
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 102/436 (23%), Positives = 167/436 (38%), Gaps = 47/436 (10%)
Query: 465 IAIIGMSGRFPAARNINEFWKILINNKDVISEIPEKIFDWKLYYENPIKSSNKINSKWYG 524
+ + G+ P + ++W+ L+ ++ I I FD ++ ++ G
Sbjct: 9 VVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITR--FD-----------ASDQACRFGG 55
Query: 525 SIPGIDEFDPLFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQKIGMFVGVE 584
+ +FD F + EA+RMD + S A+ DA N++ +IG+ +G
Sbjct: 56 EV---KDFDATQF-LDRKEAKRMDRFCHFAVCASQQAINDAKLVINELNADEIGVLIGTG 111
Query: 585 EGS-------------NYQDRLDQVNLTSTHNAILSARLAYFMDLKGPVMAINTACSSSL 631
G R + + S A + KGP TAC++
Sbjct: 112 IGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGS 171
Query: 632 VATHIACQSLRQHECDTAISAGVNLMISPEAYIAMTSAGMLS-----PDGKCYVFDERAN 686
A A + ++ I G I+P +Y SA LS P FD+ +
Sbjct: 172 NAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRD 231
Query: 687 GLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAPNGISQTELIKSVY 746
G V E ++L+ L AL+ G I+ + G + D P+G T I
Sbjct: 232 GFVMGEGSGILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWAL 291
Query: 747 KKSNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAITSNKSNIGHTFAA 806
K S L PE ++YI HGT T D E A+ N YN A++S KS GH
Sbjct: 292 KDSGLKPEMVSYINAHGTSTPANDVTETRAIKQALGNHAYN---IAVSSTKSMTGHLLGG 348
Query: 807 SGLVSLINLVQSIKYKIIPASLHCEKENNYIILKNSPFYINKSNKKWNTVNEKLRIGAVS 866
SG + + V +I +P +++ E + L P + V+ L +
Sbjct: 349 SGGIEAVATVMAIAEDKVPPTINLENPDPECDLDYVP-----GQSRALIVDVALS----N 399
Query: 867 AFGMSGTNAHIVLQEY 882
+FG G N + ++Y
Sbjct: 400 SFGFGGHNVTLAFKKY 415
>pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein
Synthase Ii (Lmo2201) From Listeria Monocytogenes
Length = 413
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 108/248 (43%), Gaps = 16/248 (6%)
Query: 637 ACQSLRQHECDTAISAGVNLMISPEAYIAMTSAGMLS----PDGKCYVFDERANGLVPSE 692
A + + + + D I+ G I+ + T+ LS P+ C FD+ +G + E
Sbjct: 174 AFKVIERGDADAXITGGAEAPITKXSLAGFTANKALSLNPDPETACRPFDKDRDGFIIGE 233
Query: 693 AVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAPNGISQTELIKSVYKKSNLN 752
V+L+ A + G I+A I G G D APNG K + L
Sbjct: 234 GAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAXKXAIDDAGLT 293
Query: 753 PEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAITSNKSNIGHTFAASGLVSL 812
P+ ++YI HGT T D E A+ VF + K AI+S KS GHT ASG +
Sbjct: 294 PDKVDYINAHGTSTPYNDEYETQAIKTVFGE---HAKKLAISSTKSXTGHTLGASGGIEA 350
Query: 813 INLVQSIKYKIIPASLHCEKENNYIILKNSPFYINKSNKKWNTVNEKLRIGAVSAFGMSG 872
I + +I+ II ++H + ++ L P ++N + + ++FG G
Sbjct: 351 IFALLTIRDNIIAPTIHLKNQDEVCDLDYVPNEAREAN---------VNVVISNSFGFGG 401
Query: 873 TNAHIVLQ 880
NA +V +
Sbjct: 402 HNATLVFK 409
>pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
Length = 428
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 109/450 (24%), Positives = 190/450 (42%), Gaps = 63/450 (14%)
Query: 465 IAIIGMSGRFPAARNINEFWKILINNKDVISEIPE-KIFDWKLYYENPIKSSNKINSKWY 523
+ I G+ P A + E WK L+ + + E ++ D I + N
Sbjct: 12 VVITGLGLVSPLASGVEETWKRLLAGESGARRVTEFEVDDLACQIACRIPVGDGTNGT-- 69
Query: 524 GSIPGIDEFDPLFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQ-------- 575
F+P + P E ++DP + + + AL+DAG+ P +Q
Sbjct: 70 --------FNP-DLHMDPKEQRKVDPFIVYAVGAADQALDDAGWHPENDEDQVRTGVLIG 120
Query: 576 --KIGMFVGVEEGSNYQDRLDQ-----------VNLTSTHNAILSARLAYFMDLKGPVMA 622
G+ VE G +D+ + +NL S H +I L+GP +
Sbjct: 121 SGIGGIEGIVEAGYTLRDKGPRRISPFFIPGRLINLASGHVSIKH-------KLRGPNHS 173
Query: 623 INTACSSSLVATHIACQSLRQHECDTAISAGVNLMISPEAYIAMTSAGMLS------PDG 676
+ TAC++ A A + + + D ++ G +S + + LS P
Sbjct: 174 VVTACATGTHAIGDAARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERNDDPTA 233
Query: 677 KCYVFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAP--N 734
+DE +G V E VVL+ L AL+ G I+A + G G++ G ITAP +
Sbjct: 234 ASRPYDEDRDGFVMGEGAGIVVLEELEHALARGAKIYAEVIGYGMS--GDAFHITAPTES 291
Query: 735 GISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAIT 794
G + + K++ + P++I+YI HGT T + D +E+ A+ V +++
Sbjct: 292 GEGAQRCMVAALKRAGIVPDEIDYINAHGTST-MADTIELGAVERVVGEAAAK---ISMS 347
Query: 795 SNKSNIGHTFAASGLVSLINLVQSIKYKIIPASLHCEKENNYIILKNSPFYINKSNKKWN 854
S KS+IGH A+G + +I+ I PA+L+ + + P +K ++
Sbjct: 348 STKSSIGHLLGAAGAAEAVFSTLAIRDNIAPATLNLDNPAAQTRIDLVP---HKPRER-- 402
Query: 855 TVNEKLRIGAVSAFGMSGTNAHIVLQEYIS 884
K+ + ++FG GTNA +VL+ Y +
Sbjct: 403 ----KIDVALSNSFGFGGTNASLVLRRYTA 428
>pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
pdb|2GQD|B Chain B, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
Length = 437
Score = 86.3 bits (212), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 89/371 (23%), Positives = 157/371 (42%), Gaps = 32/371 (8%)
Query: 485 KILINNKDVISEIPEKIFDWKLYYENPIKSSN------KINSKWYGSIPGIDEFDPLFFE 538
+++I +S I D K +EN +K N +I+++ Y S+ E E
Sbjct: 29 RVVITGMGALSPIGN---DVKTTWENALKGVNGIDKITRIDTEPY-SVHLAGELKNFNIE 84
Query: 539 --ISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQKIGMFVGVEEGSNYQDRLDQV 596
I EA RMD ++ + + A++DA N+ +IG+++G G +
Sbjct: 85 DHIDKKEARRMDRFTQYAIVAAREAVKDAQLDINENTADRIGVWIGSGIGGMETFEIAHK 144
Query: 597 NLTSTHNAILS-------------ARLAYFMDLKGPVMAINTACSSSLVATHIACQSLRQ 643
L +S +++ + KGP A TAC++ + A + +++
Sbjct: 145 QLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKIVQR 204
Query: 644 HECDTAISAGVNLMISPEAYIAMTSAGMLSP----DGKCYVFDERANGLVPSEAVVAVVL 699
+ D I+ G I+ A +++ LS + C F E +G V E +V+
Sbjct: 205 GDADAMITGGTEAPITHMAIAGFSASRALSTNDDIETACRPFQEGRDGFVMGEGAGILVI 264
Query: 700 KRLSRALSDGDPIHAIIRGSGINYDGKTNGITAPNGISQTELIKSVYKKSNLNPEDINYI 759
+ L A + G I+A I G G D AP G + +++ + + P+D+ Y+
Sbjct: 265 ESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDVQYL 324
Query: 760 ITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAITSNKSNIGHTFAASGLVSLINLVQSI 819
HGT T +GD E+ A+ + F K ++S KS GH A+G + I SI
Sbjct: 325 NAHGTSTPVGDLNEVKAIKNTFGEAA---KHLKVSSTKSMTGHLLGATGGIEAIFSALSI 381
Query: 820 KYKIIPASLHC 830
K + ++H
Sbjct: 382 KDSKVAPTIHA 392
>pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
pdb|4EWG|B Chain B, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
Length = 412
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 93/380 (24%), Positives = 161/380 (42%), Gaps = 44/380 (11%)
Query: 460 NSEELIAIIGMSGRFPAARNINEFWKILINNKDVISEIPEKIFDWKLYYENPIKSSNKIN 519
S + + I GM G +E L ++ + +P DW Y+E+ ++
Sbjct: 3 GSMKRVVITGMGGVTALGSRWDEIEAALKAGRNAVRRMP----DWD-YFES-------LH 50
Query: 520 SKWYGSIPGIDEFDPLFFEISPLEAER-MDPRQRHLLQESWLALEDAGY-GPNQIANQKI 577
++ +PG + P + P + R M + ++ S LAL DAG+ G I++ ++
Sbjct: 51 TRLAAPLPGFAQ--PADW---PRKKTRSMGRVSMYAVRASELALADAGFAGDESISDGRM 105
Query: 578 GMFVGVEEGS-----NYQDRLDQVNLTS-THNAIL-------SARLAYFMDLKGPVMAIN 624
G+ G GS + L+ ++T T N+ + + ++ F DLKG ++ +
Sbjct: 106 GVAYGSSSGSVEPIRAFGTMLESGSMTDVTSNSYVQMMPHTTAVNVSLFWDLKGRIVPTS 165
Query: 625 TACSSSLVATHIACQSLRQHECDTAISAGVNLMISPEAYI----AMTSAGMLSPDGKCYV 680
+AC+S A A +++ + ++ G + P + TS P
Sbjct: 166 SACASGSQAIGYAYENIAMGKQTLMLAGGAEELSGPAVAVFDTLYATSTRNDEPHLTPRP 225
Query: 681 FDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAPNGISQTE 740
FD + +GLV E +VL+ A + G IHA I G G N DG +T P +
Sbjct: 226 FDAKRDGLVVGEGAATLVLEEYEHAKARGATIHAEIVGFGCNSDGAH--MTQPTASTMAR 283
Query: 741 LIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAITSNKSNI 800
++ + + L+ I Y+ HGT T GD E A F + I+S KS +
Sbjct: 284 AMQLALEDAKLDANAIAYVNAHGTSTDRGDVAESQATARTFGER------MPISSLKSYV 337
Query: 801 GHTFAASGLVSLINLVQSIK 820
GHT A G + ++ +K
Sbjct: 338 GHTLGACGALEAWWTIEMMK 357
>pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis
Length = 451
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 138/353 (39%), Gaps = 50/353 (14%)
Query: 561 ALEDAGYGPNQ---------IANQKIGMFVGVEEGSNYQD-----RLDQVNLTSTHNAIL 606
AL +AG+ P + IG F G+ E + RL + + +
Sbjct: 113 ALAEAGWAPEAEQQRERTATVVASGIGGFPGLAEAVRIGETRGVRRLSPFTIPFFLSNLA 172
Query: 607 SARLAYFMDLKGPVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLMISPEAYIAM 666
+ +++ +GP+ TAC++S+ A A + +R E D ++ G +
Sbjct: 173 AGQISIKHRFRGPLGCPVTACAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGF 232
Query: 667 TSAGMLS------PDGKCYVFDERANGLVPSEAVVAVVLKRLSRALSDGD-PIHAIIRGS 719
+A LS P FD +G V E VV++ L AL+ G PI II G
Sbjct: 233 AAARALSTGFSEEPVRASRPFDRDRDGFVMGEGAAMVVVESLDHALARGARPIAEII-GY 291
Query: 720 GINYDGKTNGITAPNGISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHD 779
G D +G +K + ++ PE ++Y+ H T T +GD EI AL
Sbjct: 292 GTTADAYHMTAGPDDGSGAMRAMKLALRMGDVAPEQVDYVNAHATSTPVGDAGEIEALKT 351
Query: 780 VFKNKTYNQKFCAITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPASLHCEKENNYI-- 837
VF AI+S KS GH A+G + + +++ ++P +L+ E +
Sbjct: 352 VFGVGAGP----AISSTKSATGHLLGAAGAIEAAFSILALRDGVLPGTLNLEHPDPAADG 407
Query: 838 ------ILKNSPFYINKSNKKWNTVNEKLRIGAVSAFGMSGTNAHIVLQEYIS 884
++ P I SN FG G NA ++ + Y S
Sbjct: 408 LDLIGPAARHVPVEIALSN----------------GFGFGGVNASVLFRRYPS 444
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 114/275 (41%), Gaps = 26/275 (9%)
Query: 617 KGPVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLMIS--PEAYIAMTSAGMLS- 673
K VM +AC+S A A Q + E D AI GV I P A A M +
Sbjct: 177 KAGVMTPVSACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTN 236
Query: 674 ---PDGKCYVFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGI 730
P G C FD +G V E ++++ A + G I A I G+ I DG
Sbjct: 237 NDDPAGACRPFDRDRDGFVFGEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVA 296
Query: 731 TAPNGISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKF 790
PNG I + + L P DI+++ H TGT++GD E A+ N
Sbjct: 297 PDPNGERAGHAITRAIQLAGLAPGDIDHVNAHATGTQVGDLAEGRAI-----NNALGGNR 351
Query: 791 CAITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPASL---HCEKENNYIILKNSPFYIN 847
A+ + KS +GH+ A G V I V +++ ++IP +L + + E + ++ P
Sbjct: 352 PAVYAPKSALGHSVGAVGAVESILTVLALRDQVIPPTLNLVNLDPEIDLDVVAGEP---R 408
Query: 848 KSNKKWNTVNEKLRIGAVSAFGMSGTNAHIVLQEY 882
N ++ N +FG G N I Y
Sbjct: 409 PGNYRYAINN---------SFGFGGHNVAIAFGRY 434
>pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
pdb|4F32|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
Length = 451
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 137/353 (38%), Gaps = 50/353 (14%)
Query: 561 ALEDAGYGPNQ---------IANQKIGMFVGVEEGSNYQD-----RLDQVNLTSTHNAIL 606
AL +AG+ P + IG F G+ E + RL + + +
Sbjct: 113 ALAEAGWAPEAEQQRERTATVVASGIGGFPGLAEAVRIGETRGVRRLSPFTIPFFLSNLA 172
Query: 607 SARLAYFMDLKGPVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLMISPEAYIAM 666
+ +++ +GP+ TA ++S+ A A + +R E D ++ G +
Sbjct: 173 AGQISIKHRFRGPLGCPVTAXAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGF 232
Query: 667 TSAGMLS------PDGKCYVFDERANGLVPSEAVVAVVLKRLSRALSDGD-PIHAIIRGS 719
+A LS P FD +G V E VV++ L AL+ G PI II G
Sbjct: 233 AAARALSTGFSEEPVRASRPFDRDRDGFVMGEGAAMVVVESLDHALARGARPIAEII-GY 291
Query: 720 GINYDGKTNGITAPNGISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHD 779
G D +G +K + ++ PE ++Y+ H T T +GD EI AL
Sbjct: 292 GTTADAYHMTAGPDDGSGAMRAMKLALRMGDVAPEQVDYVNAHATSTPVGDAGEIEALKT 351
Query: 780 VFKNKTYNQKFCAITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPASLHCEKENNYI-- 837
VF AI+S KS GH A+G + + +++ ++P +L+ E +
Sbjct: 352 VFGVGAGP----AISSTKSATGHLLGAAGAIEAAFSILALRDGVLPGTLNLEHPDPAADG 407
Query: 838 ------ILKNSPFYINKSNKKWNTVNEKLRIGAVSAFGMSGTNAHIVLQEYIS 884
++ P I SN FG G NA ++ + Y S
Sbjct: 408 LDLIGPAARHVPVEIALSN----------------GFGFGGVNASVLFRRYPS 444
>pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
pdb|3E60|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
Length = 424
Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 130/278 (46%), Gaps = 29/278 (10%)
Query: 616 LKGPVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLMISPEAYIAMTSAGMLS-- 673
L+GP ++ TACS+ A A + + + D ++ G I+ + ++ LS
Sbjct: 163 LRGPNHSVVTACSTGAHAIGDAARLIALGDADVMLAGGTESPINRISLAGFSACRALSTC 222
Query: 674 ----PDGKCYVFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNG 729
P+ +D +G V E VVL+ L A G I+A I G G++ G
Sbjct: 223 RNDDPERASRPYDVDRDGFVMGEGAAIVVLEELEHAKKRGARIYAEIIGYGLS--GDAYH 280
Query: 730 ITAPN--GISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYN 787
ITAP+ G + + K++ +N +++YI HGT T + D +E+ A+ V Y
Sbjct: 281 ITAPSESGEGAQRSMMAALKRAQVNVSELDYINAHGTST-MADVIELAAVERVLG---YY 336
Query: 788 QKFCAITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPASLHCEK---ENNYIILKNSPF 844
+++S KS+IGH A+G I V +I+ I PA+L+ E E ++ + P
Sbjct: 337 APQVSMSSTKSSIGHLLGAAGAAEAIFCVLAIRDNIAPATLNLENPSIETKIDLVPHKP- 395
Query: 845 YINKSNKKWNTVNEKLRIGAVSAFGMSGTNAHIVLQEY 882
+K +TV ++FG GTNA +V++ +
Sbjct: 396 ----RERKIDTVLS-------NSFGFGGTNASLVMRRF 422
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 106/250 (42%), Gaps = 10/250 (4%)
Query: 592 RLDQVNLTSTHNAILSARLAYFMDLKGPVMAINTACSSSLVATHIACQSLRQHECDTAIS 651
R+ + L + S +A G +INTACSSS A A +S++ D +
Sbjct: 148 RVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLV 207
Query: 652 AGVNLMISPEAYIAMTSAGMLS----PDGKCYVFDERANGLVPSEAVVAVVLKRLSRALS 707
G I+P A + LS P FD+ NG V E +VL+ L A
Sbjct: 208 GGTEASITPFAIAGFQALTALSTTEDPTRASIPFDKDRNGFVMGEGSGMLVLESLEHAEK 267
Query: 708 DGDPIHAIIRGSGINYDGKTNGITAPNGISQTELIKSVYKKSNLNPEDINYIITHGTGTK 767
G I A + G G D P G + IK +++ ++PE + Y+ HGT T
Sbjct: 268 RGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTP 327
Query: 768 LGDPVEINALHDVFKNKTYNQKFCAITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPAS 827
+ E A+ V K ++S KS GH A+G V I ++++++ +P +
Sbjct: 328 ANEKGESGAIVAVLG------KEVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMT 381
Query: 828 LHCEKENNYI 837
+ ++YI
Sbjct: 382 AGTSEVSDYI 391
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 124/293 (42%), Gaps = 28/293 (9%)
Query: 596 VNLTSTHNAILSARLAYFMDLKGPVMAINTACSSSLVATHIACQSLRQHECDTAISAGVN 655
VN+ S H +S + + +GP A TAC++ + A + ++ + D ++ G
Sbjct: 155 VNMASGH---VSMKYGF----QGPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTE 207
Query: 656 LMISPEAYIAMTSAGMLS------PDGKCYVFDERANGLVPSEAVVAVVLKRLSRALSDG 709
I + + + LS P FD +G V E +VL+ A G
Sbjct: 208 SSIDALSVAGFSRSRALSTKFNSSPQEASRPFDCDRDGFVIGEGSGVIVLEEYEHAKRRG 267
Query: 710 DPIHAIIRGSGINYDGKTNGITAP--NGISQTELIKSVYKKSNLNPEDINYIITHGTGTK 767
I+A + G G++ G + IT P +G + ++S L P I+Y+ H T T
Sbjct: 268 AKIYAELCGYGMS--GDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTP 325
Query: 768 LGDPVEINALHDVFKNKTYNQKFCAITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPAS 827
+GD VE A+ VF + A +S K GH A+G V I + +I + + P +
Sbjct: 326 IGDAVEARAIKTVFSEHATSGTL-AFSSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMT 384
Query: 828 LHCEKENNYIILKNSPFYINKSNKKWNTVNEKL-RIGAVSAFGMSGTNAHIVL 879
L+ +KN +K T + L R ++FG GTNA ++
Sbjct: 385 LN---------VKNPDPIFDKRFMPLTTSKKMLVRTAMSNSFGFGGTNASLLF 428
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 106/250 (42%), Gaps = 10/250 (4%)
Query: 592 RLDQVNLTSTHNAILSARLAYFMDLKGPVMAINTACSSSLVATHIACQSLRQHECDTAIS 651
R+ + L + S +A G +INTACSSS A A +S++ D +
Sbjct: 148 RVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLV 207
Query: 652 AGVNLMISPEAYIAMTSAGMLS----PDGKCYVFDERANGLVPSEAVVAVVLKRLSRALS 707
G I+P A + LS P FD+ NG V E +VL+ L A
Sbjct: 208 GGTEASITPFAIAGFQALTALSTTEDPTRASIPFDKDRNGFVMGEGSGMLVLESLEHAEK 267
Query: 708 DGDPIHAIIRGSGINYDGKTNGITAPNGISQTELIKSVYKKSNLNPEDINYIITHGTGTK 767
G I A + G G D P G + IK +++ ++PE + Y+ HGT T
Sbjct: 268 RGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTP 327
Query: 768 LGDPVEINALHDVFKNKTYNQKFCAITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPAS 827
+ E A+ V K ++S KS GH A+G V I ++++++ +P +
Sbjct: 328 ANEKGESGAIVAVLG------KAVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMT 381
Query: 828 LHCEKENNYI 837
+ ++YI
Sbjct: 382 AGTSEVSDYI 391
>pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis Bound To The Fragment 7-Hydroxycoumarin
Length = 411
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 146/342 (42%), Gaps = 38/342 (11%)
Query: 561 ALEDAGYGPNQIANQKIGMFVGVEEGSNYQDRLDQVNLTS--------------THNAIL 606
A+ DAG +++N++ G+ +G G + + +D ++T ++
Sbjct: 86 AIADAGLTEEEVSNERTGIIMG-SGGPSTRTIVDSADITREKGPKRVGPFAVPKAMSSTA 144
Query: 607 SARLAYFMDLKGPVMAINTACSSSLVATHIACQSLRQHECDTAISAGV-----NLMISPE 661
SA LA F +KG +I++AC++S A + ++ + D + G L + +
Sbjct: 145 SATLATFFKIKGINYSISSACATSNHCIGNAYEMIQYGKQDRMFAGGCEDLDWTLSVLFD 204
Query: 662 AYIAMTSAGMLSPDGKCYVFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGI 721
A AM+S +P +D+ +G V + +VL+ L AL+ G I+ I G G
Sbjct: 205 AMGAMSSKYNDTPSTASRAYDKNRDGFVIAGGAGVLVLEDLETALARGAKIYGEIVGYGA 264
Query: 722 NYDGKTNGITAPNGISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHDVF 781
DG + AP+G +K I+YI H T T GD EI A+ +F
Sbjct: 265 TSDGYD--MVAPSGEGAIRCMKMALSTVT---SKIDYINPHATSTPAGDAPEIEAIRQIF 319
Query: 782 KNKTYNQKFC-AITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPASLHCEKENNYIILK 840
C I + KS GH+ A+G+ I + ++ I S H E+ +
Sbjct: 320 GAG----DVCPPIAATKSLTGHSLGATGVQEAIYSLLMMQNNFICESAHIEELD------ 369
Query: 841 NSPFYINKSNKKWNTVNEKLRIGAVSAFGMSGTNAHIVLQEY 882
P + + + N +L ++FG GTNA +V Q Y
Sbjct: 370 --PAFADMPIVRKRIDNVQLNTVLSNSFGFGGTNATLVFQRY 409
>pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis
pdb|3MQD|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis With Fol 0758, (1-Methyl-1h-Indazol-3-Yl)
Methanol
pdb|3U0E|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis In Complex With Fragment 9320
Length = 428
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 146/342 (42%), Gaps = 38/342 (11%)
Query: 561 ALEDAGYGPNQIANQKIGMFVGVEEGSNYQDRLDQVNLTS--------------THNAIL 606
A+ DAG +++N++ G+ +G G + + +D ++T ++
Sbjct: 103 AIADAGLTEEEVSNERTGIIMG-SGGPSTRTIVDSADITREKGPKRVGPFAVPKAMSSTA 161
Query: 607 SARLAYFMDLKGPVMAINTACSSSLVATHIACQSLRQHECDTAISAGV-----NLMISPE 661
SA LA F +KG +I++AC++S A + ++ + D + G L + +
Sbjct: 162 SATLATFFKIKGINYSISSACATSNHCIGNAYEMIQYGKQDRMFAGGCEDLDWTLSVLFD 221
Query: 662 AYIAMTSAGMLSPDGKCYVFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGI 721
A AM+S +P +D+ +G V + +VL+ L AL+ G I+ I G G
Sbjct: 222 AMGAMSSKYNDTPSTASRAYDKNRDGFVIAGGAGVLVLEDLETALARGAKIYGEIVGYGA 281
Query: 722 NYDGKTNGITAPNGISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHDVF 781
DG + AP+G +K I+YI H T T GD EI A+ +F
Sbjct: 282 TSDGYD--MVAPSGEGAIRCMKMALSTVT---SKIDYINPHATSTPAGDAPEIEAIRQIF 336
Query: 782 KNKTYNQKFC-AITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPASLHCEKENNYIILK 840
C I + KS GH+ A+G+ I + ++ I S H E+ +
Sbjct: 337 GAG----DVCPPIAATKSLTGHSLGATGVQEAIYSLLMMQNNFICESAHIEELD------ 386
Query: 841 NSPFYINKSNKKWNTVNEKLRIGAVSAFGMSGTNAHIVLQEY 882
P + + + N +L ++FG GTNA +V Q Y
Sbjct: 387 --PAFADMPIVRKRIDNVQLNTVLSNSFGFGGTNATLVFQRY 426
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 105/250 (42%), Gaps = 10/250 (4%)
Query: 592 RLDQVNLTSTHNAILSARLAYFMDLKGPVMAINTACSSSLVATHIACQSLRQHECDTAIS 651
R+ + L + S +A G +INTACSSS A A +S++ D +
Sbjct: 149 RVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLV 208
Query: 652 AGVNLMISPEAYIAMTSAGMLS----PDGKCYVFDERANGLVPSEAVVAVVLKRLSRALS 707
G I+P A + LS P FD+ NG V E +VL+ L A
Sbjct: 209 GGTEASITPFAIAGFQALTALSTTEDPTRASIPFDKDRNGFVMGEGSGMLVLESLEHAEK 268
Query: 708 DGDPIHAIIRGSGINYDGKTNGITAPNGISQTELIKSVYKKSNLNPEDINYIITHGTGTK 767
G I A + G G D P G + IK +++ ++PE + Y+ GT T
Sbjct: 269 RGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAAGTSTP 328
Query: 768 LGDPVEINALHDVFKNKTYNQKFCAITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPAS 827
+ E A+ V K ++S KS GH A+G V I ++++++ +P +
Sbjct: 329 ANEKGESGAIVAVLG------KEVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMT 382
Query: 828 LHCEKENNYI 837
+ ++YI
Sbjct: 383 AGTSEVSDYI 392
>pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|B Chain B, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|C Chain C, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|D Chain D, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|2CDH|A Chain A, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|B Chain B, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|C Chain C, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|D Chain D, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|E Chain E, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|F Chain F, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 406
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 153/342 (44%), Gaps = 41/342 (11%)
Query: 561 ALEDAGYGPNQIANQ-KIGMFVGVEEGS-NYQ----------DRLDQVN---LTSTHNAI 605
A+ DAG P N ++G+ G GS +Q L V +T +
Sbjct: 82 AIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASG 141
Query: 606 LSARLAYFMDLKGPVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLMISPEAYIA 665
+SA LA + G +I++AC++S A + ++ + D + AG + E
Sbjct: 142 VSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDI-VFAGGGEELCWEMACE 200
Query: 666 MTSAGMLS------PDGKCYVFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGS 719
+ G LS P+ +D +G V + VV++ L AL+ G I+A I G
Sbjct: 201 FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGY 260
Query: 720 GINYDGKTNGITAPNGISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHD 779
G DG + AP+G +K + P I+Y+ +HGT T +GD E+ A+ +
Sbjct: 261 GATSDGAD--MVAPSGEGAVRCMKMAMHGVD-TP--IDYLNSHGTSTPVGDVKELAAIRE 315
Query: 780 VFKNKTYNQKFCAITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPASLHCEKENNYIIL 839
VF +K+ AI++ K+ GH+ A+G+ I + +++ I S++ E+ +
Sbjct: 316 VFGDKSP-----AISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAG 370
Query: 840 KNSPFYINKSNKKWNTVNEKLRIGAVSAFGMSGTNAHIVLQE 881
N ++++ TV ++FG GTNA +V+++
Sbjct: 371 LN--IVTETTDRELTTVMS-------NSFGFGGTNATLVMRK 403
>pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ8|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1G5X|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|2BUH|A Chain A, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|B Chain B, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|C Chain C, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|D Chain D, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUI|A Chain A, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|B Chain B, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|C Chain C, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|D Chain D, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2AQ7|A Chain A, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|B Chain B, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|C Chain C, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|D Chain D, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQB|A Chain A, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|B Chain B, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|C Chain C, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|D Chain D, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2VB7|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB8|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB9|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VBA|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
Length = 406
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 153/342 (44%), Gaps = 41/342 (11%)
Query: 561 ALEDAGYGPNQIANQ-KIGMFVGVEEGS-NYQ----------DRLDQVN---LTSTHNAI 605
A+ DAG P N ++G+ G GS +Q L V +T +
Sbjct: 82 AIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASG 141
Query: 606 LSARLAYFMDLKGPVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLMISPEAYIA 665
+SA LA + G +I++AC++S A + ++ + D + AG + E
Sbjct: 142 VSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDI-VFAGGGEELCWEMACE 200
Query: 666 MTSAGMLS------PDGKCYVFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGS 719
+ G LS P+ +D +G V + VV++ L AL+ G I+A I G
Sbjct: 201 FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGY 260
Query: 720 GINYDGKTNGITAPNGISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHD 779
G DG + AP+G +K + P I+Y+ +HGT T +GD E+ A+ +
Sbjct: 261 GATSDGAD--MVAPSGEGAVRCMKMAMHGVD-TP--IDYLNSHGTSTPVGDVKELAAIRE 315
Query: 780 VFKNKTYNQKFCAITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPASLHCEKENNYIIL 839
VF +K+ AI++ K+ GH+ A+G+ I + +++ I S++ E+ +
Sbjct: 316 VFGDKSP-----AISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAG 370
Query: 840 KNSPFYINKSNKKWNTVNEKLRIGAVSAFGMSGTNAHIVLQE 881
N ++++ TV ++FG GTNA +V+++
Sbjct: 371 LN--IVTETTDRELTTVMS-------NSFGFGGTNATLVMRK 403
>pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|B Chain B, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|C Chain C, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|D Chain D, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
Length = 406
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 153/342 (44%), Gaps = 41/342 (11%)
Query: 561 ALEDAGYGPNQIANQ-KIGMFVGVEEGS-NYQ----------DRLDQVN---LTSTHNAI 605
A+ DAG P N ++G+ G GS +Q L V +T +
Sbjct: 82 AIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASG 141
Query: 606 LSARLAYFMDLKGPVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLMISPEAYIA 665
+SA LA + G +I++AC++S A + ++ + D + AG + E
Sbjct: 142 VSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDI-VFAGGGEELCWEMACE 200
Query: 666 MTSAGMLS------PDGKCYVFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGS 719
+ G LS P+ +D +G V + VV++ L AL+ G I+A I G
Sbjct: 201 FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGY 260
Query: 720 GINYDGKTNGITAPNGISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHD 779
G DG + AP+G +K + P I+Y+ +HGT T +GD E+ A+ +
Sbjct: 261 GATSDGAD--MVAPSGEGAVRCMKMAMHGVD-TP--IDYLNSHGTSTPVGDVKELAAIRE 315
Query: 780 VFKNKTYNQKFCAITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPASLHCEKENNYIIL 839
VF +K+ AI++ ++ GH+ A+G+ I + +++ I S++ E+ +
Sbjct: 316 VFGDKSP-----AISATRAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAG 370
Query: 840 KNSPFYINKSNKKWNTVNEKLRIGAVSAFGMSGTNAHIVLQE 881
N ++++ TV ++FG GTNA +V+++
Sbjct: 371 LN--IVTETTDRELTTVMS-------NSFGFGGTNATLVMRK 403
>pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
pdb|2WGE|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
With Bound Tlm
Length = 416
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 104/234 (44%), Gaps = 14/234 (5%)
Query: 620 VMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLMIS--PEAYIAMTSAGML---SP 674
VM +ACSS A A + + + D A+ GV I P A +M A P
Sbjct: 164 VMTPVSACSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTRNDEP 223
Query: 675 DGKCYVFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAPN 734
+ FD+ +G V EA ++++ A + G A + G+GI D A +
Sbjct: 224 ERASRPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAAD 283
Query: 735 GISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAIT 794
G+ + + + L+P DI+++ HGT T +GD E NA+ + A+
Sbjct: 284 GVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIGDAAEANAI------RVAGCDQAAVY 337
Query: 795 SNKSNIGHTFAASGLVSLINLVQSIKYKIIPASLHCEKENNYI---ILKNSPFY 845
+ KS +GH+ A G + + V +++ +IP +L+ E + I ++ P Y
Sbjct: 338 APKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPEIDLDVVAGEPRY 391
>pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|B Chain B, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|C Chain C, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|D Chain D, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYX|A Chain A, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|B Chain B, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|C Chain C, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|D Chain D, Kas I Lys328ala Mutant In Complex With Fatty Acid
Length = 418
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 152/342 (44%), Gaps = 41/342 (11%)
Query: 561 ALEDAGYGPNQIANQ-KIGMFVGVEEGS-NYQ----------DRLDQVN---LTSTHNAI 605
A+ DAG P N ++G+ G GS +Q L V +T +
Sbjct: 94 AIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASG 153
Query: 606 LSARLAYFMDLKGPVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLMISPEAYIA 665
+SA LA + G +I++AC++S A + ++ + D + AG + E
Sbjct: 154 VSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDI-VFAGGGEELCWEMACE 212
Query: 666 MTSAGMLS------PDGKCYVFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGS 719
+ G LS P+ +D +G V + VV++ L AL+ G I+A I G
Sbjct: 213 FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGY 272
Query: 720 GINYDGKTNGITAPNGISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHD 779
G DG + AP+G +K + P I+Y+ +HGT T +GD E+ A+ +
Sbjct: 273 GATSDGAD--MVAPSGEGAVRCMKMAMHGVD-TP--IDYLNSHGTSTPVGDVKELAAIRE 327
Query: 780 VFKNKTYNQKFCAITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPASLHCEKENNYIIL 839
VF +K+ AI++ + GH+ A+G+ I + +++ I S++ E+ +
Sbjct: 328 VFGDKSP-----AISATAAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAG 382
Query: 840 KNSPFYINKSNKKWNTVNEKLRIGAVSAFGMSGTNAHIVLQE 881
N ++++ TV ++FG GTNA +V+++
Sbjct: 383 LN--IVTETTDRELTTVMS-------NSFGFGGTNATLVMRK 415
>pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|B Chain B, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|C Chain C, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|D Chain D, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BZ4|A Chain A, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|B Chain B, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|C Chain C, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|D Chain D, Structure Of E. Coli Kas I H298q Mutant
Length = 418
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 152/342 (44%), Gaps = 41/342 (11%)
Query: 561 ALEDAGYGPNQIANQ-KIGMFVGVEEGS-NYQ----------DRLDQVN---LTSTHNAI 605
A+ DAG P N ++G+ G GS +Q L V +T +
Sbjct: 94 AIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASG 153
Query: 606 LSARLAYFMDLKGPVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLMISPEAYIA 665
+SA LA + G +I++AC++S A + ++ + D + AG + E
Sbjct: 154 VSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDI-VFAGGGEELCWEMACE 212
Query: 666 MTSAGMLS------PDGKCYVFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGS 719
+ G LS P+ +D +G V + VV++ L AL+ G I+A I G
Sbjct: 213 FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGY 272
Query: 720 GINYDGKTNGITAPNGISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHD 779
G DG + AP+G +K + P I+Y+ + GT T +GD E+ A+ +
Sbjct: 273 GATSDGAD--MVAPSGEGAVRCMKMAMHGVD-TP--IDYLNSQGTSTPVGDVKELAAIRE 327
Query: 780 VFKNKTYNQKFCAITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPASLHCEKENNYIIL 839
VF +K+ AI++ K+ GH+ A+G+ I + +++ I S++ E+ +
Sbjct: 328 VFGDKSP-----AISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAG 382
Query: 840 KNSPFYINKSNKKWNTVNEKLRIGAVSAFGMSGTNAHIVLQE 881
N ++++ TV ++FG GTNA +V+++
Sbjct: 383 LN--IVTETTDRELTTVMS-------NSFGFGGTNATLVMRK 415
>pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation
pdb|2BYY|B Chain B, E. Coli Kas I H298e Mutation
pdb|2BYY|C Chain C, E. Coli Kas I H298e Mutation
pdb|2BYY|D Chain D, E. Coli Kas I H298e Mutation
pdb|2BZ3|A Chain A, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|B Chain B, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|C Chain C, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|D Chain D, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
Length = 418
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 152/342 (44%), Gaps = 41/342 (11%)
Query: 561 ALEDAGYGPNQIANQ-KIGMFVGVEEGS-NYQ----------DRLDQVN---LTSTHNAI 605
A+ DAG P N ++G+ G GS +Q L V +T +
Sbjct: 94 AIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASG 153
Query: 606 LSARLAYFMDLKGPVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLMISPEAYIA 665
+SA LA + G +I++AC++S A + ++ + D + AG + E
Sbjct: 154 VSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDI-VFAGGGEELCWEMACE 212
Query: 666 MTSAGMLS------PDGKCYVFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGS 719
+ G LS P+ +D +G V + VV++ L AL+ G I+A I G
Sbjct: 213 FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGY 272
Query: 720 GINYDGKTNGITAPNGISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHD 779
G DG + AP+G +K + P I+Y+ + GT T +GD E+ A+ +
Sbjct: 273 GATSDGAD--MVAPSGEGAVRCMKMAMHGVD-TP--IDYLNSEGTSTPVGDVKELAAIRE 327
Query: 780 VFKNKTYNQKFCAITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPASLHCEKENNYIIL 839
VF +K+ AI++ K+ GH+ A+G+ I + +++ I S++ E+ +
Sbjct: 328 VFGDKSP-----AISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAG 382
Query: 840 KNSPFYINKSNKKWNTVNEKLRIGAVSAFGMSGTNAHIVLQE 881
N ++++ TV ++FG GTNA +V+++
Sbjct: 383 LN--IVTETTDRELTTVMS-------NSFGFGGTNATLVMRK 415
>pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
Length = 406
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 102/209 (48%), Gaps = 19/209 (9%)
Query: 673 SPDGKCYVFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITA 732
+P+ +D +G V + VV++ L AL+ G I+A I G G DG + A
Sbjct: 214 TPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGAD--MVA 271
Query: 733 PNGISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCA 792
P+G +K + P I+Y+ +HGT T +GD E+ A+ +VF +K+ A
Sbjct: 272 PSGEGAVRCMKMAMHGVD-TP--IDYLNSHGTSTPVGDVKELAAIREVFGDKSP-----A 323
Query: 793 ITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPASLHCEKENNYIILKNSPFYINKSNKK 852
I++ K+ GH+ A+G+ I + +++ I S++ E+ + N ++++
Sbjct: 324 ISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLN--IVTETTDRE 381
Query: 853 WNTVNEKLRIGAVSAFGMSGTNAHIVLQE 881
TV ++FG GTNA +V+++
Sbjct: 382 LTTVMS-------NSFGFGGTNATLVMRK 403
>pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|B Chain B, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|C Chain C, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|D Chain D, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
Length = 418
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 102/209 (48%), Gaps = 19/209 (9%)
Query: 673 SPDGKCYVFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITA 732
+P+ +D +G V + VV++ L AL+ G I+A I G G DG + A
Sbjct: 226 TPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGAD--MVA 283
Query: 733 PNGISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCA 792
P+G +K + P I+Y+ +HGT T +GD E+ A+ +VF +K+ A
Sbjct: 284 PSGEGAVRCMKMAMHGVD-TP--IDYLNSHGTSTPVGDVKELAAIREVFGDKSP-----A 335
Query: 793 ITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPASLHCEKENNYIILKNSPFYINKSNKK 852
I++ K+ GH+ A+G+ I + +++ I S++ E+ + N ++++
Sbjct: 336 ISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLN--IVTETTDRE 393
Query: 853 WNTVNEKLRIGAVSAFGMSGTNAHIVLQE 881
TV ++FG GTNA +V+++
Sbjct: 394 LTTVMS-------NSFGFGGTNATLVMRK 415
>pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|B Chain B, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|C Chain C, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|D Chain D, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|2CF2|A Chain A, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|J Chain J, Architecture Of Mammalian Fatty Acid Synthase
Length = 406
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 102/209 (48%), Gaps = 19/209 (9%)
Query: 673 SPDGKCYVFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITA 732
+P+ +D +G V + VV++ L AL+ G I+A I G G DG + A
Sbjct: 214 TPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGAD--MVA 271
Query: 733 PNGISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCA 792
P+G +K + P I+Y+ +HGT T +GD E+ A+ +VF +K+ A
Sbjct: 272 PSGEGAVRCMKMAMHGVD-TP--IDYLNSHGTSTPVGDVKELAAIREVFGDKSP-----A 323
Query: 793 ITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPASLHCEKENNYIILKNSPFYINKSNKK 852
I++ K+ GH+ A+G+ I + +++ I S++ E+ + N ++++
Sbjct: 324 ISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLN--IVTETTDRE 381
Query: 853 WNTVNEKLRIGAVSAFGMSGTNAHIVLQE 881
TV ++FG GTNA +V+++
Sbjct: 382 LTTVMS-------NSFGFGGTNATLVMRK 403
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin.
pdb|1KAS|A Chain A, Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
Length = 412
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 120/285 (42%), Gaps = 22/285 (7%)
Query: 605 ILSARLAYFMDLKGPVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLMISPEAYI 664
+++ L L+GP ++I TAC+S + A + + + D ++ G +P
Sbjct: 141 MVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVG 200
Query: 665 AMTSAGMLS-----PDGKCYVFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGS 719
+A LS P +D+ +G V + +VL+ A G I+A + G
Sbjct: 201 GFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGF 260
Query: 720 GINYDGKTNGITAP--NGISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINAL 777
G++ D +T+P NG + + + + + I Y+ HGT T GD E A+
Sbjct: 261 GMSSDAYH--MTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAV 318
Query: 778 HDVFKNKTYNQKFCAITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPASLHCEKENNYI 837
+F ++S KS GH A+G V I + +++ + +P +++ + +
Sbjct: 319 KTIFGEAASR---VLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGC 375
Query: 838 ILKNSPFYINK-SNKKWNTVNEKLRIGAVSAFGMSGTNAHIVLQE 881
L P + S ++ N +FG GTN ++ ++
Sbjct: 376 DLDFVPHEARQVSGMEYTLCN---------SFGFGGTNGSLIFKK 411
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii)
Length = 427
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 120/285 (42%), Gaps = 22/285 (7%)
Query: 605 ILSARLAYFMDLKGPVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLMISPEAYI 664
+++ L L+GP ++I TAC+S + A + + + D ++ G +P
Sbjct: 156 MVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVG 215
Query: 665 AMTSAGMLS-----PDGKCYVFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGS 719
+A LS P +D+ +G V + +VL+ A G I+A + G
Sbjct: 216 GFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGF 275
Query: 720 GINYDGKTNGITAP--NGISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINAL 777
G++ D +T+P NG + + + + + I Y+ HGT T GD E A+
Sbjct: 276 GMSSDAYH--MTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAV 333
Query: 778 HDVFKNKTYNQKFCAITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPASLHCEKENNYI 837
+F ++S KS GH A+G V I + +++ + +P +++ + +
Sbjct: 334 KTIFGEAASR---VLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGC 390
Query: 838 ILKNSPFYINK-SNKKWNTVNEKLRIGAVSAFGMSGTNAHIVLQE 881
L P + S ++ N +FG GTN ++ ++
Sbjct: 391 DLDFVPHEARQVSGMEYTLCN---------SFGFGGTNGSLIFKK 426
>pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
pdb|3OYT|B Chain B, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
Length = 410
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 126/291 (43%), Gaps = 26/291 (8%)
Query: 598 LTSTHNAILSARLAYFMDLKGPVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLM 657
+T + +SA LA +KG +I++AC++S A + ++ + D + AG
Sbjct: 138 VTKAXASGVSACLATPFKIKGVNYSISSACATSAHCIGHALELIQLGKQDI-VFAGGGEE 196
Query: 658 ISPEAYIAMTSAGMLS------PDGKCYVFDERANGLVPSEAVVAVVLKRLSRALSDGDP 711
+ E + G LS P +D+ +G V + VV++ L AL+ G
Sbjct: 197 LCWEXACEFDAXGALSTKYNDTPAKASRTYDQDRDGFVIAGGGGXVVVEELEHALARGAH 256
Query: 712 IHAIIRGSGINYDGKTNGITAPNGISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDP 771
I+A I G G DG AP+G + + I+Y HGT T +GD
Sbjct: 257 IYAEIVGYGATSDGADX--VAPSGEGAVRCXQXAXAGVDT---PIDYXNVHGTSTPVGDV 311
Query: 772 VEINALHDVFKNKTYNQKFCAITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPASLHCE 831
E+ A+ +VF N T AI+S K+ GH+ A+G+ I + +++ I S++
Sbjct: 312 KELGAIREVFGNNTP-----AISSTKAXTGHSLGAAGVHEAIFSLLXVEHGFIAPSIN-- 364
Query: 832 KENNYIILKNSPFYINKSNKKWNTVNEKLRIGAVSAFGMSGTNAHIVLQEY 882
+ N N T +L ++FG GTNA +V ++Y
Sbjct: 365 -------IDNLDEQAQGXNIITETTQRELTTVXSNSFGFGGTNATLVXRKY 408
>pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
Length = 416
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 103/234 (44%), Gaps = 14/234 (5%)
Query: 620 VMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLMIS--PEAYIAMTSAGML---SP 674
VM +A SS A A + + + D A+ GV I P A +M A P
Sbjct: 164 VMTPVSAQSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTRNDEP 223
Query: 675 DGKCYVFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAPN 734
+ FD+ +G V EA ++++ A + G A + G+GI D A +
Sbjct: 224 ERASRPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAAD 283
Query: 735 GISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAIT 794
G+ + + + L+P DI+++ HGT T +GD E NA+ + A+
Sbjct: 284 GVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIGDAAEANAI------RVAGCDQAAVY 337
Query: 795 SNKSNIGHTFAASGLVSLINLVQSIKYKIIPASLHCEKENNYI---ILKNSPFY 845
+ KS +GH+ A G + + V +++ +IP +L+ E + I ++ P Y
Sbjct: 338 APKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPEIDLDVVAGEPRY 391
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently
Linked Dodecanoic Acid
Length = 427
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 119/285 (41%), Gaps = 22/285 (7%)
Query: 605 ILSARLAYFMDLKGPVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLMISPEAYI 664
+++ L L+GP ++I TAC+S + A + + + D ++ G +P
Sbjct: 156 MVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVG 215
Query: 665 AMTSAGMLS-----PDGKCYVFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGS 719
+A LS P +D+ +G V + +VL+ A G I+A + G
Sbjct: 216 GFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGF 275
Query: 720 GINYDGKTNGITAP--NGISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINAL 777
G++ D +T+P NG + + + + + I Y+ HGT T GD E A+
Sbjct: 276 GMSSDAYH--MTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAV 333
Query: 778 HDVFKNKTYNQKFCAITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPASLHCEKENNYI 837
+F ++S S GH A+G V I + +++ + +P +++ + +
Sbjct: 334 KTIFGEAASR---VLVSSTASMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGC 390
Query: 838 ILKNSPFYINK-SNKKWNTVNEKLRIGAVSAFGMSGTNAHIVLQE 881
L P + S ++ N +FG GTN ++ ++
Sbjct: 391 DLDFVPHEARQVSGMEYTLCN---------SFGFGGTNGSLIFKK 426
>pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin
pdb|3HO2|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
pdb|3HO9|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
A1
pdb|3I8P|A Chain A, Crystal Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin A1
Length = 427
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 119/285 (41%), Gaps = 22/285 (7%)
Query: 605 ILSARLAYFMDLKGPVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLMISPEAYI 664
+++ L L+GP ++I TA +S + A + + + D ++ G +P
Sbjct: 156 MVAGHLTIMYGLRGPSISIATAATSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVG 215
Query: 665 AMTSAGMLS-----PDGKCYVFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGS 719
+A LS P +D+ +G V + +VL+ A G I+A + G
Sbjct: 216 GFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGF 275
Query: 720 GINYDGKTNGITAP--NGISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINAL 777
G++ D +T+P NG + + + + + I Y+ HGT T GD E A+
Sbjct: 276 GMSSDAYH--MTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAV 333
Query: 778 HDVFKNKTYNQKFCAITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPASLHCEKENNYI 837
+F ++S KS GH A+G V I + +++ + +P +++ + +
Sbjct: 334 KTIFGEAASR---VLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGC 390
Query: 838 ILKNSPFYINK-SNKKWNTVNEKLRIGAVSAFGMSGTNAHIVLQE 881
L P + S ++ N +FG GTN ++ ++
Sbjct: 391 DLDFVPHEARQVSGMEYTLCN---------SFGFGGTNGSLIFKK 426
>pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|D Chain D, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|F Chain F, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|H Chain H, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 415
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 95/214 (44%), Gaps = 14/214 (6%)
Query: 616 LKGPVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLMISPEAYIAMTSAGMLS-- 673
++GP A+ + L A A +++R+ +S GV+ + P +++ ++G +S
Sbjct: 158 MRGPSSALVAEQAGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRISTA 216
Query: 674 --PDGKCYVFDERANGLVPSEAVVAVVLKRLSRALSDG-DPIHAIIRGSGINYDGKTNGI 730
PD FDERA G VP E +VL+ + A + G + + G +D G
Sbjct: 217 TDPDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFD-PAPGS 275
Query: 731 TAPNGISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKF 790
P G+ + I+ + PED++ + G G D E A+ VF ++
Sbjct: 276 GRPAGLERA--IRLALNDAGTGPEDVDVVFADGAGVPELDAAEARAIGRVF-----GREG 328
Query: 791 CAITSNKSNIGHTFAASGLVSLINLVQSIKYKII 824
+T K+ G ++ G + ++ + S++ +I
Sbjct: 329 VPVTVPKTTTGRLYSGGGPLDVVTALMSLREGVI 362
>pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant
pdb|2GFX|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Platensimycin
pdb|3G0Y|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydroplatensimycin
pdb|3G11|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydrophenyl Platensimycin
Length = 427
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 119/285 (41%), Gaps = 22/285 (7%)
Query: 605 ILSARLAYFMDLKGPVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLMISPEAYI 664
+++ L L+GP ++I TA +S + A + + + D ++ G +P
Sbjct: 156 MVAGHLTIMYGLRGPSISIATAQTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVG 215
Query: 665 AMTSAGMLS-----PDGKCYVFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGS 719
+A LS P +D+ +G V + +VL+ A G I+A + G
Sbjct: 216 GFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGF 275
Query: 720 GINYDGKTNGITAP--NGISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINAL 777
G++ D +T+P NG + + + + + I Y+ HGT T GD E A+
Sbjct: 276 GMSSDAYH--MTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAV 333
Query: 778 HDVFKNKTYNQKFCAITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPASLHCEKENNYI 837
+F ++S KS GH A+G V I + +++ + +P +++ + +
Sbjct: 334 KTIFGEAASR---VLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGC 390
Query: 838 ILKNSPFYINK-SNKKWNTVNEKLRIGAVSAFGMSGTNAHIVLQE 881
L P + S ++ N +FG GTN ++ ++
Sbjct: 391 DLDFVPHEARQVSGMEYTLCN---------SFGFGGTNGSLIFKK 426
>pdb|3SLK|A Chain A, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
pdb|3SLK|B Chain B, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
Length = 795
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 18/165 (10%)
Query: 69 GTYLITGGTGRLGMLFSDYL-INKYSTNLILSGR----SKLNSIIYKKLKKFNNKAIYIQ 123
GT L+TGGTG LG + +L I + NL+L R + + + +L + +
Sbjct: 531 GTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQA 590
Query: 124 VDVSDKLKMXXXXXXXXXXXGPIDGVLHIAGISGLTSNILEA-NYKNFYSVLSSKISGTI 182
DV+D+ + P+ V+H AG+ L + E+ + VL K+ G
Sbjct: 591 CDVADRETLAKVLASIPDEH-PLTAVVHAAGV--LDDGVSESLTVERLDQVLRPKVDGA- 646
Query: 183 ALNYALENTILKLQKNKLDFVCYFSSSSAILGDFGSCDYAMGNRF 227
+L+L + V FSS S +LG G +YA N F
Sbjct: 647 -------RNLLELIDPDVALV-LFSSVSGVLGSGGQGNYAAANSF 683
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 76/345 (22%), Positives = 132/345 (38%), Gaps = 56/345 (16%)
Query: 532 FDPLFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQI----------ANQKIGMFV 581
FDP + ISP A +D + + A +G+ P ++ + Q GM
Sbjct: 2629 FDPTVWGISPDMASSIDRVALWNIVATVDAFLSSGFTPTELMRWVHPSQVASTQGTGMGG 2688
Query: 582 GVEEGSNYQ----------DRLDQV--NLTSTHNAILSARLAYFMDLKGPVMAINTACSS 629
+ Y D L +V N+ + H ++ + + + + PV AC++
Sbjct: 2689 MTSMQTMYHGNLLGRAKPNDILQEVLPNVVAAH--VMQSYVGGYGAMVHPV----GACAT 2742
Query: 630 SLVATHIACQSLRQHECDTAISAGVNLM----------ISPEAYIAMTSAGMLSPDGKCY 679
+ V+ ++ + D I+ G + + ++ A M A +S
Sbjct: 2743 AAVSVEEGVDKIKLGKADLVIAGGFDDLTLEAIIGFGDMAATADTEMMRAKGISDSKFSR 2802
Query: 680 VFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAPN----- 734
D R G + ++ ++L R AL G P+ A++ + DG I AP
Sbjct: 2803 ANDRRRLGFLEAQGGGTILLARGDLALKMGLPVLAVVGYAQSFADGVHTSIPAPGLGALG 2862
Query: 735 ---GISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALH----DVFKNKTYN 787
G ++ L +S+ + + +DI I H T T DP E LH D N
Sbjct: 2863 AARGGRESTLARSL-AQLGVGADDIAVISKHDTSTLANDPNE-TELHERIADSMGRAPGN 2920
Query: 788 QKFCAITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPA--SLHC 830
F I S K+ GH + + ++ L Q ++ +IP SL C
Sbjct: 2921 PLF--IVSQKTLTGHAKGGAAVFQMMGLCQILRDGVIPPNRSLDC 2963
>pdb|2LIU|A Chain A, Nmr Structure Of Holo-Acpi Domain From Cura Module From
Lyngbya Majuscula
pdb|2LIW|A Chain A, Nmr Structure Of Hmg-Acpi Domain From Cura Module From
Lyngbya Majuscula
Length = 99
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%)
Query: 341 IKNHICNILNTKKSEIYKNKNLADYGFDSISLAEFSRILSKFYSLDIMPSIFFSYSTLER 400
+K + L T++SEI +++ D G DSI E++ +++ Y+L++ + + Y TL
Sbjct: 26 LKQQLAEALYTEESEIAEDQKFVDLGLDSIVGVEWTTTINQTYNLNLKATKLYDYPTLLE 85
Query: 401 LITYFIK 407
L Y +
Sbjct: 86 LSGYIAQ 92
>pdb|2Z5L|A Chain A, The First Ketoreductase Of The Tylosin Pks
Length = 511
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 18/145 (12%)
Query: 69 GTYLITGGTGRLGMLFSDYLINKYSTNLILSGRSKLNSI----IYKKLKKFNNKAIYIQV 124
GT LITGG G +G + L + + L+L+ R + + ++L+ + ++
Sbjct: 260 GTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAAC 319
Query: 125 DVSDKLKMXXXXXXXXXXXGPIDGVLHIAGISGLTSNILEA-NYKNFYSVLSSKISGTIA 183
DV+++ + P + V H AGI L +++ + ++F +V +K+ G
Sbjct: 320 DVAERDALAALVTAY-----PPNAVFHTAGI--LDDAVIDTLSPESFETVRGAKVCGAEL 372
Query: 184 LNYALENTILKLQKNKLDFVCYFSS 208
L+ L LD FSS
Sbjct: 373 LHQ------LTADIKGLDAFVLFSS 391
>pdb|4DI7|A Chain A, Structure Of A2-type Ketoreductase Of Modular Polyketide
Synthases
Length = 556
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 74/181 (40%), Gaps = 14/181 (7%)
Query: 52 IKSIILKDFKNSYIKQGGTYLITGGTGRLGMLFSDYLINKYSTNLILSGRSKLNSI---- 107
+++ D K GT L+TGG+G L + +L + + +L+L R +
Sbjct: 282 VRADAAPDGSARDWKPRGTTLVTGGSGTLAPHLARWLAEQGAEHLVLVSRRGPEAPGAAE 341
Query: 108 IYKKLKKFNNKAIYIQVDVSDKLKMXXXXXXXXXXXGPIDGVLHIAGISGLTSNILEA-N 166
+ +L + + D++D+ + + V+H A L + L+A
Sbjct: 342 LRAELAERGTETTLAACDITDRDAVAALLESLKAEGRTVRTVVHTAATIEL--HTLDATT 399
Query: 167 YKNFYSVLSSKISGTIALNYALENTILKLQKNKLDFVCYFSSSSAILGDFGSCDYAMGNR 226
+F VL++K++G A L + DFV Y SS++ + G Y GN
Sbjct: 400 LDDFDRVLAAKVTG------AQILDELLDDEELDDFVLY-SSTAGMWGSGAHAAYVAGNA 452
Query: 227 F 227
+
Sbjct: 453 Y 453
>pdb|2OPW|A Chain A, Crystal Structure Of Human Phytanoyl-Coa Dioxygenase
Phyhd1 (Apo)
pdb|3OBZ|A Chain A, Crystal Structure Of Human Phytanoyl-Coa Dioxygenase
Phyhd1 2- Oxoglutarate And Iron Complex
Length = 291
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 680 VFDERANGLVPSEAVVAVVLKRLSRALSDGDPI-HAIIRGSGINYDGKTNGITAPNGISQ 738
VFDE+ N LVP E + ++ AL DP+ +I + ++ G+ P +
Sbjct: 85 VFDEKGNFLVPPEKSI----NKIGHALHAHDPVFKSITHSFKVQTLARSLGLQMPVVVQS 140
Query: 739 TELIKSVYKKSNLNP-EDINYIITHGTGTKLG 769
+ K + ++P +D +++ T G LG
Sbjct: 141 MYIFKQPHFGGEVSPHQDASFLYTEPLGRVLG 172
>pdb|3U5T|A Chain A, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Reductase From Sinorhizobium Meliloti
pdb|3U5T|B Chain B, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Reductase From Sinorhizobium Meliloti
pdb|3U5T|C Chain C, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Reductase From Sinorhizobium Meliloti
pdb|3U5T|D Chain D, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Reductase From Sinorhizobium Meliloti
Length = 267
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 72 LITGGTGRLGMLFSDYLINKYSTNLI-LSGRSKLNSIIYKKLKKFNNKAIYIQVDVSDKL 130
++TG + +G + L + T +I +G++ + K++ KA+ Q DVSD
Sbjct: 31 IVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPA 90
Query: 131 KMXXXXXXXXXXXGPIDGVLHIAGISGLTSNILEANYKNFYSVLSSKISGT 181
+ G +D +++ AGI LT+ I E F V++ + GT
Sbjct: 91 AVRRLFATAEEAFGGVDVLVNNAGIXPLTT-IAETGDAVFDRVIAVNLKGT 140
>pdb|3EO8|A Chain A, Crystal Structure Of Blub-Like Flavoprotein
(Yp_001089088.1) From Clostridium Difficile 630 At 1.74
A Resolution
pdb|3EO8|B Chain B, Crystal Structure Of Blub-Like Flavoprotein
(Yp_001089088.1) From Clostridium Difficile 630 At 1.74
A Resolution
pdb|3EO8|C Chain C, Crystal Structure Of Blub-Like Flavoprotein
(Yp_001089088.1) From Clostridium Difficile 630 At 1.74
A Resolution
pdb|3EO8|D Chain D, Crystal Structure Of Blub-Like Flavoprotein
(Yp_001089088.1) From Clostridium Difficile 630 At 1.74
A Resolution
pdb|3EO8|E Chain E, Crystal Structure Of Blub-Like Flavoprotein
(Yp_001089088.1) From Clostridium Difficile 630 At 1.74
A Resolution
pdb|3EO8|F Chain F, Crystal Structure Of Blub-Like Flavoprotein
(Yp_001089088.1) From Clostridium Difficile 630 At 1.74
A Resolution
Length = 219
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 455 KNTDINSEELIAIIGMSGRFPAARNINEFWKILINNKDVISEIPEKI 501
KN D++ E+++ I +G P+ +NI + ++I +D+ +I + I
Sbjct: 18 KNQDVSDEDILKXIKAAGAAPSGKNIQNWHFVVIKRRDLXEKIADVI 64
>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
pdb|3HMU|B Chain B, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
Length = 472
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 737 SQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAITSN 796
+ I K + L P D+N++ G G++ D I + ++NK +K I+
Sbjct: 97 THVPAIALAQKLAELAPGDLNHVFFAGGGSEAND-TNIRMVRTYWQNKGQPEKTVIISRK 155
Query: 797 KSNIGHTFAASGLVSLINLVQSIKYKIIPASLHCEKENNY 836
+ G T A+S L + + + +IP H + N +
Sbjct: 156 NAYHGSTVASSALGGMAGM--HAQSGLIPDVHHINQPNWW 193
>pdb|3BBJ|A Chain A, Crystal Structure Of A Putative Thioesterase Ii (Tfu_2367)
From Thermobifida Fusca Yx At 2.45 A Resolution
pdb|3BBJ|B Chain B, Crystal Structure Of A Putative Thioesterase Ii (Tfu_2367)
From Thermobifida Fusca Yx At 2.45 A Resolution
Length = 272
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 543 EAERMDPRQRHLLQESWLALEDAGYGPNQIA 573
+ R+DPRQ HL + +LA D + P+ A
Sbjct: 131 QCRRVDPRQSHLPDDGFLARVDVDFSPDSYA 161
>pdb|3I1J|A Chain A, Structure Of A Putative Short Chain Dehydrogenase From
Pseudomonas Syringae
pdb|3I1J|B Chain B, Structure Of A Putative Short Chain Dehydrogenase From
Pseudomonas Syringae
Length = 247
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 144 GPIDGVLHIAGISGLTSNILEANYKNFYSVLSSKISGTIALNYALENTILKLQKNKLDFV 203
G +DG+LH A I G + + + ++F V ++ T L AL L L K D
Sbjct: 93 GRLDGLLHNASIIGPRTPLEQLPDEDFXQVXHVNVNATFXLTRAL----LPLLKRSEDAS 148
Query: 204 CYFSSSS------AILGDFGSCDYAMGNRFQTV 230
F+SSS A G +G +A QT+
Sbjct: 149 IAFTSSSVGRKGRANWGAYGVSKFATEGLXQTL 181
>pdb|3PK0|A Chain A, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE
SDR FROM Mycobacterium Smegmatis
pdb|3PK0|B Chain B, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE
SDR FROM Mycobacterium Smegmatis
pdb|3PK0|C Chain C, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE
SDR FROM Mycobacterium Smegmatis
pdb|3PK0|D Chain D, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE
SDR FROM Mycobacterium Smegmatis
Length = 262
Score = 30.8 bits (68), Expect = 4.2, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 67 QGGTYLITGGTGRLGMLFSDYLINKYSTNLILSGRSK--LNSIIYKKLKKFNNKAIYIQV 124
QG + ++TGGT +G + + + N+ ++GRS +++ + + + K I +Q
Sbjct: 9 QGRSVVVTGGTKGIGRGIAT-VFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQT 67
Query: 125 DVSDKLKMXXXXXXXXXXXGPIDGVLHIAGI 155
DVSD+ + G ID V AG+
Sbjct: 68 DVSDRAQCDALAGRAVEEFGGIDVVCANAGV 98
>pdb|2PNF|A Chain A, Structure Of Aquifex Aeolicus Fabg 3-oxoacyl-(acyl-carrier
Protein) Reductase
pdb|2PNF|B Chain B, Structure Of Aquifex Aeolicus Fabg 3-oxoacyl-(acyl-carrier
Protein) Reductase
pdb|2P68|A Chain A, Crystal Structure Of Aq_1716 From Aquifex Aeolicus Vf5
pdb|2P68|B Chain B, Crystal Structure Of Aq_1716 From Aquifex Aeolicus Vf5
Length = 248
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 34/158 (21%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
Query: 67 QGGTYLITGGTGRLGMLFSDYLINKYSTNLILSGRS--KLNSIIYKKLKKFNNKAIYIQV 124
QG L+TG T +G ++ L + ST +I++G S + ++ + K+ KA +++
Sbjct: 6 QGKVSLVTGSTRGIGRAIAEKLASAGST-VIITGTSGERAKAVAEEIANKYGVKAHGVEM 64
Query: 125 DVSDKLKMXXXXXXXXXXXGPIDGVLHIAGISGLTSNILEANYKNFYSVLSSKISGTIAL 184
++ + + ID +++ AGI+ L + ++ VL ++GT +
Sbjct: 65 NLLSEESINKAFEEIYNLVDGIDILVNNAGIT-RDKLFLRMSLLDWEEVLKVNLTGTFLV 123
Query: 185 NYALENTILKLQKNKLDFVCYFSSSSAILGDFGSCDYA 222
+N++ K+ K + + SS G+ G +Y+
Sbjct: 124 T---QNSLRKMIKQRWGRIVNISSVVGFTGNVGQVNYS 158
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 619 PVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLMISPEAYIAMTS 668
P +N C S L + +A QS+ E D I+ G M S YI T+
Sbjct: 83 PSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENM-SQAPYIVPTA 131
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 601 THNAILSARLAYFMDLKGPVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLM 657
T A+L A L + P IN C+S + A +A QSL D ++ G+ M
Sbjct: 72 TRQAVLGAGL----PISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESM 124
>pdb|1U7T|A Chain A, Crystal Structure Of AbadHSD10 WITH A BOUND INHIBITOR
pdb|1U7T|B Chain B, Crystal Structure Of AbadHSD10 WITH A BOUND INHIBITOR
pdb|1U7T|C Chain C, Crystal Structure Of AbadHSD10 WITH A BOUND INHIBITOR
pdb|1U7T|D Chain D, Crystal Structure Of AbadHSD10 WITH A BOUND INHIBITOR
Length = 261
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 67 QGGTYLITGGTGRLGMLFSDYLINKYSTNLILSGRSKLNSIIYKKLKKFNNKAIYIQVDV 126
+G +ITGG LG+ ++ L+ + ++ ++L NS + KK N ++ DV
Sbjct: 9 KGLVAVITGGASGLGLATAERLVGQGASAVLLD---LPNSGGEAQAKKLGNNCVFAPADV 65
Query: 127 SDKLKMXXXXXXXXXXXGPIDGVLHIAGI--SGLTSNILEAN---YKNFYSVLSSKISGT 181
+ + + G +D ++ AGI + T N+ + ++F VL + GT
Sbjct: 66 TSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGT 125
>pdb|1SO8|A Chain A, Abeta-bound Human Abad Structure [also Known As
3-hydroxyacyl-coa Dehydrogenase Type Ii (type Ii Hadh),
Endoplasmic Reticulum- Associated Amyloid Beta-peptide
Binding Protein (erab)]
Length = 261
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 67 QGGTYLITGGTGRLGMLFSDYLINKYSTNLILSGRSKLNSIIYKKLKKFNNKAIYIQVDV 126
+G +ITGG LG+ ++ L+ + ++ ++L NS + KK N ++ DV
Sbjct: 9 KGLVAVITGGASGLGLATAERLVGQGASAVLLD---LPNSGGEAQAKKLGNNCVFAPADV 65
Query: 127 SDKLKMXXXXXXXXXXXGPIDGVLHIAGI--SGLTSNILEAN---YKNFYSVLSSKISGT 181
+ + + G +D ++ AGI + T N+ + ++F VL + GT
Sbjct: 66 TSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGT 125
>pdb|2O23|A Chain A, The Structure Of Wild-Type Human Hadh2
(17beta-Hydroxysteroid Dehydrogenase Type 10) Bound To
Nad+ At 1.2 A
pdb|2O23|B Chain B, The Structure Of Wild-Type Human Hadh2
(17beta-Hydroxysteroid Dehydrogenase Type 10) Bound To
Nad+ At 1.2 A
Length = 265
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 67 QGGTYLITGGTGRLGMLFSDYLINKYSTNLILSGRSKLNSIIYKKLKKFNNKAIYIQVDV 126
+G +ITGG LG+ ++ L+ + ++ ++L NS + KK N ++ DV
Sbjct: 11 KGLVAVITGGASGLGLATAERLVGQGASAVLLD---LPNSGGEAQAKKLGNNCVFAPADV 67
Query: 127 SDKLKMXXXXXXXXXXXGPIDGVLHIAGI--SGLTSNILEAN---YKNFYSVLSSKISGT 181
+ + + G +D ++ AGI + T N+ + ++F VL + GT
Sbjct: 68 TSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGT 127
>pdb|1EDO|A Chain A, The X-Ray Structure Of Beta-Keto Acyl Carrier Protein
Reductase From Brassica Napus Complexed With Nadp+
pdb|2CDH|G Chain G, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|H Chain H, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|I Chain I, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|J Chain J, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|K Chain K, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|L Chain L, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 244
Score = 29.6 bits (65), Expect = 7.6, Method: Composition-based stats.
Identities = 32/152 (21%), Positives = 65/152 (42%), Gaps = 5/152 (3%)
Query: 72 LITGGTGRLGMLFSDYLINKYSTNLILSGRS-KLNSIIYKKLKKFNNKAIYIQVDVSDKL 130
++TG + +G + L L+ RS K + K+++ + +AI DVS +
Sbjct: 5 VVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEA 64
Query: 131 KMXXXXXXXXXXXGPIDGVLHIAGISGLTSNILEANYKNFYSVLSSKISGTIALNYALEN 190
+ G ID V++ AGI+ T ++ + V+ ++G A
Sbjct: 65 DVEAMMKTAIDAWGTIDVVVNNAGITRDTL-LIRMKKSQWDEVIDLNLTGVFLCTQAATK 123
Query: 191 TILKLQKNKLDFVCYFSSSSAILGDFGSCDYA 222
++K +K + + +S ++G+ G +YA
Sbjct: 124 IMMKKRKGR---IINIASVVGLIGNIGQANYA 152
>pdb|2GDZ|A Chain A, Crystal Structure Of 15-Hydroxyprostaglandin Dehydrogenase
Type1, Complexed With Nad+
Length = 267
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 63/130 (48%), Gaps = 14/130 (10%)
Query: 63 SYIKQGGTYLITGGTGRLGMLFSDYLINKYSTNLI----LSGRSKLNSIIYKKLKKFNNK 118
+++ G L+TG +G F++ L+ K + + L + + ++++ + K
Sbjct: 2 AHMVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEP--QK 59
Query: 119 AIYIQVDVSDKLKMXXXXXXXXXXXGPIDGVLHIAGISGLTSNILEANYKNFYSV-LSSK 177
++IQ DV+D+ ++ G +D +++ AG++ E N++ + L S
Sbjct: 60 TLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNN------EKNWEKTLQINLVSV 113
Query: 178 ISGT-IALNY 186
ISGT + L+Y
Sbjct: 114 ISGTYLGLDY 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,987,399
Number of Sequences: 62578
Number of extensions: 1128080
Number of successful extensions: 3674
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 3507
Number of HSP's gapped (non-prelim): 118
length of query: 962
length of database: 14,973,337
effective HSP length: 108
effective length of query: 854
effective length of database: 8,214,913
effective search space: 7015535702
effective search space used: 7015535702
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)