BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6150
(148 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q26473|SEM1A_SCHAM Semaphorin-1A OS=Schistocerca americana GN=SEMA-1A PE=1 SV=1
Length = 730
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 43/54 (79%), Positives = 48/54 (88%)
Query: 45 AVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDYPFYFDEIRLPEDCV 98
A+YSRVARVCK DKGGPH FGDRWT+FLKSRLNCSVPGDYPFYF+EI+ D +
Sbjct: 235 AIYSRVARVCKHDKGGPHQFGDRWTSFLKSRLNCSVPGDYPFYFNEIQSTSDII 288
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 113 KDCVNLQDPYCAWDLKLRKC 132
++CV+LQDPYCAWD KC
Sbjct: 502 RECVSLQDPYCAWDNVELKC 521
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 89 DEIRLPEDCVNLQDPYCAWD 108
D+I +CV+LQDPYCAWD
Sbjct: 496 DKITNCRECVSLQDPYCAWD 515
>sp|Q24322|SEM1A_DROME Semaphorin-1A OS=Drosophila melanogaster GN=Sema-1a PE=2 SV=2
Length = 850
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 52/67 (77%), Gaps = 2/67 (2%)
Query: 45 AVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDYPFYFDEIRLPEDCVNLQDPY 104
A+YSRVARVCK DKGGPH F +RWT+FLKSRLNCS+PGDYPFYF+EI+ + V Q Y
Sbjct: 230 AIYSRVARVCKWDKGGPHRFRNRWTSFLKSRLNCSIPGDYPFYFNEIQSASNLVEGQ--Y 287
Query: 105 CAWDLKL 111
+ KL
Sbjct: 288 GSMSSKL 294
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 114 DCVNLQDPYCAWDLKLRKC 132
+CV LQDPYCAWD KC
Sbjct: 507 ECVALQDPYCAWDKIAGKC 525
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 89 DEIRLPEDCVNLQDPYCAWD 108
D+I +CV LQDPYCAWD
Sbjct: 500 DKITSCSECVALQDPYCAWD 519
>sp|Q26972|SEM1A_TRICF Semaphorin-1A OS=Tribolium confusum GN=SEMA-1A PE=2 SV=1
Length = 712
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/54 (72%), Positives = 45/54 (83%)
Query: 45 AVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDYPFYFDEIRLPEDCV 98
+YSRVARVCK DKGGPH DRWT+FLK+RLNCS+PG+YPFYFDEI+ D V
Sbjct: 233 VIYSRVARVCKDDKGGPHQSRDRWTSFLKARLNCSIPGEYPFYFDEIQSTSDIV 286
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 27/45 (60%), Gaps = 7/45 (15%)
Query: 89 DEIRLPEDCVNLQDPYCAWDLKLRKDCVNLQDPYCAWDLKLRKCV 133
DEIRL NL +CA + KDCV LQDP+CAWD K CV
Sbjct: 476 DEIRL----ANLN--HCASKTRC-KDCVELQDPHCAWDAKQNLCV 513
>sp|Q9XZC8|SEM2A_SCHGR Semaphorin-2A OS=Schistocerca gregaria GN=SEMA-2A PE=2 SV=1
Length = 697
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 39/48 (81%)
Query: 45 AVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDYPFYFDEIR 92
+VYSRVARVCK D GG + W TFLK+RLNCS+PG++PFYF+EI+
Sbjct: 251 SVYSRVARVCKKDVGGKNILSQNWATFLKARLNCSIPGEFPFYFNEIQ 298
>sp|Q17330|SEM1A_CAEEL Semaphorin-1A OS=Caenorhabditis elegans GN=smp-1 PE=2 SV=2
Length = 712
Score = 73.2 bits (178), Expect = 5e-13, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
Query: 46 VYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVP-GDYPFYFDEIRLPEDCVN 99
+Y+RVARVCK+DKGG +RWT++LK+RLNCS+P G PFYF+E++ D ++
Sbjct: 254 IYARVARVCKNDKGGARPANERWTSYLKARLNCSLPSGSSPFYFNELKAVSDPID 308
Score = 37.0 bits (84), Expect = 0.045, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 105 CAWDLKLRKDCVNLQDPYCAWDLKLRKCV 133
CA K CV LQDP+CAWD + +CV
Sbjct: 497 CAQQTSCSK-CVQLQDPHCAWDSSIARCV 524
Score = 32.3 bits (72), Expect = 0.99, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Query: 97 CVNLQDPYCAWDLKLRKDCVN 117
CV LQDP+CAWD + + CV+
Sbjct: 506 CVQLQDPHCAWDSSIAR-CVH 525
>sp|Q24323|SEM2A_DROME Semaphorin-2A OS=Drosophila melanogaster GN=Sema-2a PE=1 SV=2
Length = 724
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 41/56 (73%), Gaps = 4/56 (7%)
Query: 45 AVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDYPFYFDEI----RLPED 96
AVYSR+ARVCK D GG + W T+LK+RLNCS+ G++PFYF+EI +LP D
Sbjct: 282 AVYSRIARVCKKDVGGKNLLAHNWATYLKARLNCSISGEFPFYFNEIQSVYQLPSD 337
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 118 LQDPYCAWDLKLRKCVPYQERTLELL 143
++DPYC WD + C PY+ L+LL
Sbjct: 536 VRDPYCGWDKEANTCRPYE---LDLL 558
>sp|Q9P283|SEM5B_HUMAN Semaphorin-5B OS=Homo sapiens GN=SEMA5B PE=2 SV=4
Length = 1151
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 41/55 (74%), Gaps = 4/55 (7%)
Query: 46 VYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDYPFYFDEIR----LPED 96
VYSRVARVCK+D GG D WTTF+K+RLNCS PG+ PFY++E++ LPE
Sbjct: 314 VYSRVARVCKNDVGGRFLLEDTWTTFMKARLNCSRPGEVPFYYNELQSAFHLPEQ 368
>sp|Q60519|SEM5B_MOUSE Semaphorin-5B OS=Mus musculus GN=Sema5b PE=2 SV=2
Length = 1093
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 41/55 (74%), Gaps = 4/55 (7%)
Query: 46 VYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDYPFYFDEIR----LPED 96
VYSRVARVCK+D GG D WTTF+K+RLNCS PG+ PFY++E++ LPE
Sbjct: 256 VYSRVARVCKNDVGGRFLLEDTWTTFMKARLNCSRPGEVPFYYNELQSAFHLPEQ 310
>sp|Q8NFY4|SEM6D_HUMAN Semaphorin-6D OS=Homo sapiens GN=SEMA6D PE=2 SV=1
Length = 1073
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Query: 45 AVYSRVARVCKSDKGGPHHFGDR-WTTFLKSRLNCSVPGDYPFYFDEIRLPEDCVNLQ 101
AVYSRVAR+CK+D GG ++ WT+FLK+RLNCSVPGD FYFD ++ D + +
Sbjct: 250 AVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSITDIIQIN 307
>sp|Q5R7F5|SEM6D_PONAB Semaphorin-6D OS=Pongo abelii GN=SEMA6D PE=2 SV=1
Length = 1017
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Query: 45 AVYSRVARVCKSDKGGPHHFGDR-WTTFLKSRLNCSVPGDYPFYFDEIRLPEDCVNLQ 101
AVYSRVAR+CK+D GG ++ WT+FLK+RLNCSVPGD FYFD ++ D + +
Sbjct: 250 AVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSITDIIQIN 307
>sp|Q76KF0|SEM6D_MOUSE Semaphorin-6D OS=Mus musculus GN=Sema6d PE=2 SV=1
Length = 1073
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Query: 45 AVYSRVARVCKSDKGGPHHFGDR-WTTFLKSRLNCSVPGDYPFYFDEIRLPEDCVNLQ 101
AVYSRVAR+CK+D GG ++ WT+FLK+RLNCSVPGD FYFD ++ D + +
Sbjct: 250 AVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSITDIIQIN 307
>sp|D3ZTD8|SEM5A_RAT Semaphorin-5A OS=Rattus norvegicus GN=Sema5a PE=1 SV=1
Length = 1074
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 46 VYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDYPFYFDEIR----LPE 95
V+SR ARVCK+D GG D WTTF+K+RLNCS PG+ PFY++E++ LPE
Sbjct: 246 VFSRAARVCKNDIGGRFLLEDTWTTFMKARLNCSRPGEVPFYYNELQSTFFLPE 299
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 110 KLRKDCVNLQDPYCAWDLKLRKCVPYQE 137
+ R C+ QDPYC WD ++KC +E
Sbjct: 491 QTRGACIGAQDPYCGWDAVMKKCTSLEE 518
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 97 CVNLQDPYCAWDLKLRKDCVNLQD--PYCAWDLKLRKCVPYQERTLELLF 144
C+ QDPYC WD ++K C +L++ WD + C P + T++ F
Sbjct: 496 CIGAQDPYCGWDAVMKK-CTSLEESLSMTQWDQSVPTC-PTRNLTVDGSF 543
>sp|Q13591|SEM5A_HUMAN Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3
Length = 1074
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 46 VYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDYPFYFDEIR----LPE 95
V+SR ARVCK+D GG D WTTF+K+RLNCS PG+ PFY++E++ LPE
Sbjct: 246 VFSRAARVCKNDIGGRFLLEDTWTTFMKARLNCSRPGEVPFYYNELQSTFFLPE 299
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 110 KLRKDCVNLQDPYCAWDLKLRKCVPYQE 137
+ R C+ QDPYC WD+ ++KC +E
Sbjct: 491 RTRSTCIGAQDPYCGWDVVMKKCTSLEE 518
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 92 RLPEDCVNLQDPYCAWDLKLRKDCVNLQD--PYCAWDLKLRKCVPYQERTLELLF 144
R C+ QDPYC WD+ ++K C +L++ W+ + C P + T++ F
Sbjct: 491 RTRSTCIGAQDPYCGWDVVMKK-CTSLEESLSMTQWEQSISAC-PTRNLTVDGHF 543
>sp|Q62217|SEM5A_MOUSE Semaphorin-5A OS=Mus musculus GN=Sema5a PE=2 SV=1
Length = 1077
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 46 VYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDYPFYFDEIR----LPE 95
V+SR ARVCK+D GG D WTTF+K+RLNCS PG+ PFY++E++ LPE
Sbjct: 246 VFSRPARVCKNDIGGRFLLEDTWTTFMKARLNCSRPGEVPFYYNELQGTFFLPE 299
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 110 KLRKDCVNLQDPYCAWDLKLRKCVPYQE 137
+ R C+ QDPYC WD ++KC +E
Sbjct: 491 QTRSACIGAQDPYCGWDAVMKKCTSLEE 518
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 87 YFDEIRLPEDCVNLQDPYCAWDLKLRKDCVNLQD--PYCAWDLKLRKCVPYQERTLELLF 144
+F + R C+ QDPYC WD ++K C +L++ WD + C P + T++ F
Sbjct: 488 HFHQTR--SACIGAQDPYCGWDAVMKK-CTSLEESLSMTQWDQSIPTC-PTRNLTVDGSF 543
>sp|Q95XP4|SEM2A_CAEEL Semaphorin-2A OS=Caenorhabditis elegans GN=mab-20 PE=1 SV=1
Length = 658
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 36/47 (76%)
Query: 46 VYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDYPFYFDEIR 92
V+SRVARVCK D GG + WT+F+K+RLNCSV ++PFYFD I+
Sbjct: 244 VHSRVARVCKKDIGGRNVLRQVWTSFVKARLNCSVSANFPFYFDHIQ 290
>sp|Q60PR7|SEM2A_CAEBR Semaphorin-2A OS=Caenorhabditis briggsae GN=mab-20 PE=3 SV=1
Length = 656
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 36/47 (76%)
Query: 46 VYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDYPFYFDEIR 92
++SRVARVCK D GG + WT+F+K+RLNCSV ++PFYFD I+
Sbjct: 240 IHSRVARVCKKDIGGRNVLRQVWTSFVKARLNCSVSANFPFYFDHIQ 286
>sp|Q9H3T2|SEM6C_HUMAN Semaphorin-6C OS=Homo sapiens GN=SEMA6C PE=2 SV=4
Length = 930
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 47 YSRVARVCKSDKGG-PHHFGDRWTTFLKSRLNCSVPGDYPFYFDEIRLPEDCVNLQ 101
+SRVARVCK D GG P WT+FLK RLNCSVPGD FYFD ++ VNL
Sbjct: 255 FSRVARVCKRDMGGSPRALDRHWTSFLKLRLNCSVPGDSTFYFDVLQALTGPVNLH 310
>sp|Q9WTL3|SEM6C_RAT Semaphorin-6C OS=Rattus norvegicus GN=Sema6c PE=2 SV=1
Length = 960
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 47 YSRVARVCKSDKGG-PHHFGDRWTTFLKSRLNCSVPGDYPFYFDEIRLPEDCVNLQ 101
+SRVARVCK D GG P WT+FLK RLNCSVPGD FYFD ++ VNL
Sbjct: 254 FSRVARVCKRDMGGSPRALDRHWTSFLKLRLNCSVPGDSTFYFDVLQSLTGPVNLH 309
>sp|Q9WTM3|SEM6C_MOUSE Semaphorin-6C OS=Mus musculus GN=Sema6c PE=2 SV=1
Length = 931
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 47 YSRVARVCKSDKGG-PHHFGDRWTTFLKSRLNCSVPGDYPFYFDEIRLPEDCVNLQ 101
+SRVARVCK D GG P WT+FLK RLNCSVPGD FYFD ++ VNL
Sbjct: 256 FSRVARVCKRDMGGSPRALDRHWTSFLKLRLNCSVPGDSTFYFDVLQSLTGPVNLH 311
>sp|O54951|SEM6B_MOUSE Semaphorin-6B OS=Mus musculus GN=Sema6b PE=2 SV=1
Length = 886
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 43 KNAVYSRVARVCKSDKGG-PHHFGDRWTTFLKSRLNCSVPGDYPFYFDEIRLPEDCVNL 100
+ V SRVARVCK+D GG P +WT+FLK+RLNCSVPGD FYF+ ++ V+L
Sbjct: 257 EKVVVSRVARVCKNDVGGSPRVLEKQWTSFLKARLNCSVPGDSHFYFNVLQAVTGVVSL 315
>sp|O70141|SEM6B_RAT Semaphorin-6B OS=Rattus norvegicus GN=Sema6b PE=2 SV=1
Length = 887
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 43 KNAVYSRVARVCKSDKGG-PHHFGDRWTTFLKSRLNCSVPGDYPFYFDEIRLPEDCVNL 100
+ V SRVARVCK+D GG P +WT+FLK+RLNCSVPGD FYF+ ++ V+L
Sbjct: 257 EKVVVSRVARVCKNDVGGSPRVLEKQWTSFLKARLNCSVPGDSHFYFNVLQAVTGVVSL 315
>sp|Q9H3T3|SEM6B_HUMAN Semaphorin-6B OS=Homo sapiens GN=SEMA6B PE=1 SV=4
Length = 888
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 43 KNAVYSRVARVCKSDKGG-PHHFGDRWTTFLKSRLNCSVPGDYPFYFDEIRLPEDCVNL 100
+ V SRVARVCK+D GG P +WT+FLK+RLNCSVPGD FYF+ ++ V+L
Sbjct: 256 EKVVVSRVARVCKNDVGGSPRVLEKQWTSFLKARLNCSVPGDSHFYFNVLQAVTGVVSL 314
>sp|Q9H2E6|SEM6A_HUMAN Semaphorin-6A OS=Homo sapiens GN=SEMA6A PE=1 SV=2
Length = 1030
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 41 TKKNAVYSRVARVCKSDKGGPHHFGDR-WTTFLKSRLNCSVPGDYPFYFDEIRLPEDCVN 99
T V+ RVA+VCK+D GG ++ WT+FLK+RLNCSVPGD FYF+ ++ D +
Sbjct: 245 TMGKVVFPRVAQVCKNDMGGSQRVLEKQWTSFLKARLNCSVPGDSHFYFNILQAVTDVIR 304
Query: 100 LQ 101
+
Sbjct: 305 IN 306
>sp|O35464|SEM6A_MOUSE Semaphorin-6A OS=Mus musculus GN=Sema6a PE=1 SV=2
Length = 1031
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 41 TKKNAVYSRVARVCKSDKGGPHHFGDR-WTTFLKSRLNCSVPGDYPFYFDEIRLPEDCVN 99
T V+ RVA+VCK+D GG ++ WT+FLK+RLNCSVPGD FYF+ ++ D +
Sbjct: 245 TMGKVVFPRVAQVCKNDMGGSQRVLEKQWTSFLKARLNCSVPGDSHFYFNILQAVTDVIR 304
Query: 100 LQ 101
+
Sbjct: 305 IN 306
>sp|O95025|SEM3D_HUMAN Semaphorin-3D OS=Homo sapiens GN=SEMA3D PE=2 SV=2
Length = 777
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 41 TKKNAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGD--YPFYFDEIR 92
T + SRV RVCK+D GG ++WTTFLK+RL CS+PG YFDE++
Sbjct: 273 TSDKTILSRVGRVCKNDVGGQRSLINKWTTFLKARLICSIPGSDGADTYFDELQ 326
>sp|O42237|SEM3E_CHICK Semaphorin-3E OS=Gallus gallus GN=SEMA3E PE=2 SV=1
Length = 785
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 41 TKKNAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDYPF--YFDEIRLPEDCV 98
T +A+Y+RV RVC +D GG ++W+TFLK+RL CSVPG +FDE+ ED
Sbjct: 261 TSTHAIYTRVGRVCVNDMGGQRIVVNKWSTFLKTRLVCSVPGRNGIDTHFDEL---EDVF 317
Query: 99 NLQ 101
LQ
Sbjct: 318 LLQ 320
>sp|Q9W6G6|SEM3D_DANRE Semaphorin-3D OS=Danio rerio GN=sema3d PE=2 SV=1
Length = 764
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 9/70 (12%)
Query: 25 FQSTSIDGVDHVWTQLTKKNAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPG-- 82
F+ S DG T +V SRVAR+C++D GG ++WTTFLK+RL CS+PG
Sbjct: 268 FREASRDGS-------TTDKSVLSRVARICRNDVGGLRSLTNKWTTFLKARLVCSIPGPD 320
Query: 83 DYPFYFDEIR 92
+FDE++
Sbjct: 321 GVDTHFDELQ 330
>sp|Q8BH34|SEM3D_MOUSE Semaphorin-3D OS=Mus musculus GN=Sema3d PE=1 SV=1
Length = 777
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 41 TKKNAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGD--YPFYFDEIR 92
T ++ SRV RVCK+D GG ++WTTFLK+RL CS+PG +FDE++
Sbjct: 273 TSDRSILSRVGRVCKNDVGGQRSLINKWTTFLKARLICSIPGSDGADTHFDELQ 326
>sp|Q64151|SEM4C_MOUSE Semaphorin-4C OS=Mus musculus GN=Sema4c PE=1 SV=1
Length = 834
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 46 VYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDYPFYFDEIR 92
V +RVARVCK D GG +WTTFLK+RL CS P D+ YF++++
Sbjct: 253 VVARVARVCKGDMGGARTLQKKWTTFLKARLVCSAP-DWKVYFNQLK 298
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 114 DCVNLQDPYCAWDLKLRKCV 133
DCV +DPYCAW++ +CV
Sbjct: 508 DCVLARDPYCAWNVNTSRCV 527
>sp|Q90663|SEM3D_CHICK Semaphorin-3D OS=Gallus gallus GN=SEMA3D PE=2 SV=1
Length = 761
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 41 TKKNAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPG--DYPFYFDEIR 92
T + SRV RVCK+D GG ++WTTFLK+RL CS+PG +FDE++
Sbjct: 261 TSDKTILSRVGRVCKNDMGGQRSLINKWTTFLKARLVCSIPGPEGADTHFDELQ 314
>sp|Q9W686|SE3AB_DANRE Semaphorin-3ab OS=Danio rerio GN=sema3ab PE=2 SV=1
Length = 778
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 9/70 (12%)
Query: 25 FQSTSIDGVDHVWTQLTKKNAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPG-- 82
F+ +IDG Q++K A ++R+ ++CK+D GG ++WTTFLK+RL CSVPG
Sbjct: 248 FRENAIDG-----EQISK--ATHARIGQLCKNDFGGHRSLVNKWTTFLKARLVCSVPGLN 300
Query: 83 DYPFYFDEIR 92
+FDE++
Sbjct: 301 GIDTHFDELQ 310
>sp|Q9C0C4|SEM4C_HUMAN Semaphorin-4C OS=Homo sapiens GN=SEMA4C PE=2 SV=2
Length = 833
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 46 VYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDYPFYFDEIR 92
V +RVARVCK D GG +WTTFLK+RL CS P ++ YF++++
Sbjct: 253 VVARVARVCKGDMGGARTLQRKWTTFLKARLACSAP-NWQLYFNQLQ 298
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 114 DCVNLQDPYCAWDLKLRKCVPYQERTLELLF 144
DCV +DPYCAW + +CV + LL
Sbjct: 508 DCVLARDPYCAWSVNTSRCVAVGGHSGSLLI 538
>sp|Q62179|SEM4B_MOUSE Semaphorin-4B OS=Mus musculus GN=Sema4b PE=1 SV=2
Length = 823
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 43 KNAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGD-YPF 86
+N + SRVARVCK D+GG RWT+FLK++L CS P D +PF
Sbjct: 262 ENTIVSRVARVCKGDEGGERVLQQRWTSFLKAQLLCSRPDDGFPF 306
>sp|Q90607|SEM3A_CHICK Semaphorin-3A OS=Gallus gallus GN=SEMA3A PE=1 SV=1
Length = 772
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 9/70 (12%)
Query: 25 FQSTSIDGVDHVWTQLTKKNAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDY 84
F+ +IDG + T K A ++R+ ++CK+D GG ++WTTFLK+RL CSVPG
Sbjct: 247 FRENAIDG------EHTGK-ATHARIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPN 299
Query: 85 PF--YFDEIR 92
+FDE++
Sbjct: 300 GIDTHFDELQ 309
>sp|Q14563|SEM3A_HUMAN Semaphorin-3A OS=Homo sapiens GN=SEMA3A PE=2 SV=1
Length = 771
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 14/83 (16%)
Query: 25 FQSTSIDGVDHVWTQLTKKNAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDY 84
F+ +IDG +H A ++R+ ++CK+D GG ++WTTFLK+RL CSVPG
Sbjct: 247 FRENAIDG-EH------SGKATHARIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPN 299
Query: 85 PF--YFDEIRLPEDC--VNLQDP 103
+FDE+ +D +N +DP
Sbjct: 300 GIDTHFDEL---QDVFLMNFKDP 319
>sp|O15041|SEM3E_HUMAN Semaphorin-3E OS=Homo sapiens GN=SEMA3E PE=2 SV=1
Length = 775
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%), Gaps = 2/50 (4%)
Query: 44 NAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPG--DYPFYFDEI 91
+A+Y+RV R+C +D GG ++W+TFLK+RL CSVPG YFDE+
Sbjct: 260 HAIYTRVGRLCVNDVGGQRILVNKWSTFLKARLVCSVPGMNGIDTYFDEL 309
>sp|O08665|SEM3A_MOUSE Semaphorin-3A OS=Mus musculus GN=Sema3a PE=1 SV=2
Length = 772
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 9/70 (12%)
Query: 25 FQSTSIDGVDHVWTQLTKKNAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDY 84
F+ +IDG +H A ++R+ ++CK+D GG ++WTTFLK+RL CSVPG
Sbjct: 247 FRENAIDG-EH------SGKATHARIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPN 299
Query: 85 PF--YFDEIR 92
+FDE++
Sbjct: 300 GIDTHFDELQ 309
>sp|Q63548|SEM3A_RAT Semaphorin-3A OS=Rattus norvegicus GN=Sema3a PE=2 SV=1
Length = 772
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 9/70 (12%)
Query: 25 FQSTSIDGVDHVWTQLTKKNAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDY 84
F+ +IDG +H A ++R+ ++CK+D GG ++WTTFLK+RL CSVPG
Sbjct: 247 FRENAIDG-EH------SGKATHARIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPN 299
Query: 85 PF--YFDEIR 92
+FDE++
Sbjct: 300 GIDTHFDELQ 309
>sp|Q9NPR2|SEM4B_HUMAN Semaphorin-4B OS=Homo sapiens GN=SEMA4B PE=1 SV=3
Length = 832
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 43 KNAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGD-YPF 86
+N + SR+AR+CK D+GG RWT+FLK++L CS P D +PF
Sbjct: 270 ENTIVSRIARICKGDEGGERVLQQRWTSFLKAQLLCSRPDDGFPF 314
>sp|Q62178|SEM4A_MOUSE Semaphorin-4A OS=Mus musculus GN=Sema4a PE=1 SV=2
Length = 760
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 48 SRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDYPFYF--DEIRLPEDCVNLQDPYC 105
SRVA+VCK+D GG +WTTFLK++L C+ PG PF + LP D ++ Y
Sbjct: 263 SRVAQVCKNDVGGEKLLQKKWTTFLKAQLLCAQPGQLPFNIIRHAVLLPADSPSVSRIYA 322
Query: 106 AW 107
+
Sbjct: 323 VF 324
>sp|Q9H3S1|SEM4A_HUMAN Semaphorin-4A OS=Homo sapiens GN=SEMA4A PE=1 SV=2
Length = 761
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 48 SRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDYPFYF--DEIRLPED 96
SRVARVCK+D GG +WTTFLK++L C+ PG PF + LP D
Sbjct: 263 SRVARVCKNDVGGEKLLQKKWTTFLKAQLLCTQPGQLPFNVIRHAVLLPAD 313
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 41/116 (35%), Gaps = 23/116 (19%)
Query: 40 LTKKNAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDYPFYF-DEIRL---PE 95
L K Y+R+A G H T S V GD + +EI+L PE
Sbjct: 408 LVKSGVEYTRLAVETAQGLDGHSHLVMYLGTTTGSLHKAVVSGDSSAHLVEEIQLFPDPE 467
Query: 96 DCVNLQDPYC-----------AWDLKLRK--------DCVNLQDPYCAWDLKLRKC 132
NLQ W + DCV +DP+CAWD + R C
Sbjct: 468 PVRNLQLAPTQGAVFVGFSGGVWRVPRANCSVYESCVDCVLARDPHCAWDPESRTC 523
>sp|Q9W7J1|SE3AA_DANRE Semaphorin-3aa OS=Danio rerio GN=sema3aa PE=2 SV=1
Length = 860
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 9/70 (12%)
Query: 25 FQSTSIDGVDHVWTQLTKKNAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPG-- 82
F+ ++DG +H A SR+ ++CK+D GG ++WTTFLK++L CSVPG
Sbjct: 248 FKENAMDG-EHTG------KATISRIGQLCKNDMGGHRSLVNKWTTFLKAKLTCSVPGLN 300
Query: 83 DYPFYFDEIR 92
+FDE++
Sbjct: 301 GIDTHFDELQ 310
>sp|P70275|SEM3E_MOUSE Semaphorin-3E OS=Mus musculus GN=Sema3e PE=1 SV=3
Length = 775
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 44 NAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPG--DYPFYFDEI 91
+ +Y+RV R+C +D GG ++W+TFLK+RL CSVPG YFDE+
Sbjct: 260 HTIYTRVGRLCVNDMGGQRILVNKWSTFLKARLVCSVPGMNGIDTYFDEL 309
>sp|O88632|SEM3F_MOUSE Semaphorin-3F OS=Mus musculus GN=Sema3f PE=2 SV=2
Length = 785
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 2/50 (4%)
Query: 45 AVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGD--YPFYFDEIR 92
AVY+R+ R+C +D GG ++W+TFLK+RL CSVPG+ +FDE++
Sbjct: 291 AVYARIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGEDGIETHFDELQ 340
>sp|Q13275|SEM3F_HUMAN Semaphorin-3F OS=Homo sapiens GN=SEMA3F PE=2 SV=2
Length = 785
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 2/50 (4%)
Query: 45 AVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGD--YPFYFDEIR 92
AVY+R+ R+C +D GG ++W+TFLK+RL CSVPG+ +FDE++
Sbjct: 291 AVYARIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGEDGIETHFDELQ 340
>sp|Q9YHX4|SEM4E_DANRE Semaphorin-4E OS=Danio rerio GN=sema4e PE=2 SV=1
Length = 766
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 25/34 (73%)
Query: 48 SRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVP 81
SRVARVCK D GG +WT+FLK+RL+C VP
Sbjct: 255 SRVARVCKGDLGGQRTLQKKWTSFLKARLDCQVP 288
>sp|Q62177|SEM3B_MOUSE Semaphorin-3B OS=Mus musculus GN=Sema3b PE=2 SV=2
Length = 748
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 48 SRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPG-DYPFYFDEIR 92
SRV ++C++D GG ++WTTFLK+RL CSVPG + +FD+++
Sbjct: 262 SRVGQICRNDLGGQRSLVNKWTTFLKARLVCSVPGVEGDTHFDQLQ 307
>sp|Q13214|SEM3B_HUMAN Semaphorin-3B OS=Homo sapiens GN=SEMA3B PE=2 SV=1
Length = 749
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 48 SRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPG-DYPFYFDEIR 92
SRV ++C++D GG ++WTTFLK+RL CSVPG + +FD+++
Sbjct: 263 SRVGQICRNDVGGQRSLVNKWTTFLKARLVCSVPGVEGDTHFDQLQ 308
>sp|Q92854|SEM4D_HUMAN Semaphorin-4D OS=Homo sapiens GN=SEMA4D PE=1 SV=1
Length = 862
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 7 WSTPSLDEVNLCCRGSVRFQSTSIDGVD-HVWTQLTKKNAVYS--------RVARVCKSD 57
++ P L+E + +R S DG D V+ T+ + Y R+ARVCK D
Sbjct: 201 YAIPWLNEPSFVFADVIRKSPDSPDGEDDRVYFFFTEVSVEYEFVFRVLIPRIARVCKGD 260
Query: 58 KGGPHHFGDRWTTFLKSRLNCSVPGDYPFYFDEIR 92
+GG +WT+FLK+RL CS P D F+ +R
Sbjct: 261 QGGLRTLQKKWTSFLKARLICSRP-DSGLVFNVLR 294
>sp|Q90665|SEM4D_CHICK Semaphorin-4D (Fragment) OS=Gallus gallus GN=SEMA4D PE=2 SV=1
Length = 295
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 49 RVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDYPFYFDEIRLPEDCVNLQDP 103
R+ARVCK D+GG +WT+FLK+RL C++P D F+ I D L+ P
Sbjct: 25 RIARVCKRDQGGLRTLQKKWTSFLKARLICTIP-DKNLIFNII---NDVFTLKSP 75
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.481
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,372,252
Number of Sequences: 539616
Number of extensions: 2453068
Number of successful extensions: 4428
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4211
Number of HSP's gapped (non-prelim): 210
length of query: 148
length of database: 191,569,459
effective HSP length: 106
effective length of query: 42
effective length of database: 134,370,163
effective search space: 5643546846
effective search space used: 5643546846
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)