Query psy6150
Match_columns 148
No_of_seqs 114 out of 320
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 18:57:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6150.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6150hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oky_B Putative uncharacterize 100.0 3.8E-38 1.3E-42 285.1 7.7 124 6-141 196-348 (565)
2 1q47_A Semaphorin 3A; beta pro 100.0 1.7E-35 5.8E-40 262.6 8.5 130 6-141 190-350 (495)
3 4gz8_A Semaphorin-3A; multi-do 100.0 1E-33 3.5E-38 259.6 8.1 131 6-141 198-358 (667)
4 3nvq_A Semaphorin-7A; beta-pro 100.0 1.8E-33 6.1E-38 255.6 6.4 106 9-121 172-305 (590)
5 1olz_A Semaphorin 4D; developm 100.0 2.4E-33 8.3E-38 256.0 6.6 132 6-141 179-343 (663)
6 3nvx_A Protein A39; beta-prope 100.0 1.7E-31 5.8E-36 233.0 3.3 113 9-141 137-270 (383)
7 2uzx_B Hepatocyte growth facto 99.8 2.7E-22 9.2E-27 184.6 1.3 107 8-134 217-369 (727)
8 3ol2_B Plexin-B1; beta-propell 99.8 3.1E-21 1.1E-25 173.1 2.4 103 7-136 194-343 (528)
9 3al9_A Plexin-A2; beta-propell 99.8 4.5E-21 1.5E-25 171.5 -0.3 97 14-133 210-356 (539)
10 4fww_A Macrophage-stimulating 99.8 1.3E-20 4.3E-25 166.0 0.0 97 32-139 214-358 (527)
11 3oky_A Plexin-A2; transmembran 99.7 2.3E-18 7.7E-23 158.5 -0.6 89 31-133 217-355 (681)
12 3nvn_B Plexin-C1; beta-propell 98.8 2.8E-09 9.5E-14 95.4 3.3 70 6-95 185-264 (476)
13 3al9_A Plexin-A2; beta-propell 22.4 30 0.001 30.7 1.4 28 111-138 486-513 (539)
14 1olz_A Semaphorin 4D; developm 21.6 35 0.0012 31.1 1.6 26 111-136 487-512 (663)
No 1
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=100.00 E-value=3.8e-38 Score=285.13 Aligned_cols=124 Identities=31% Similarity=0.536 Sum_probs=110.0
Q ss_pred cccCCCCCCCceeeeeeeEeecCCCCCCceEEEEEe--------cCceeeeeeecccccCCCC-CcccCcceehhhhhhh
Q psy6150 6 TWSTPSLDEVNLCCRGSVRFQSTSIDGVDHVWTQLT--------KKNAVYSRVARVCKSDKGG-PHHFGDRWTTFLKSRL 76 (148)
Q Consensus 6 ~~~~~wL~~P~Fv~~~~i~f~~~s~d~ddkvY~ff~--------~~k~~~sRVaRVCknD~GG-~~~L~~kWTTFlKArL 76 (148)
+|+++|||||+||+|..+ +|+|||||+ ++|.++||||||||||.|| ++.|+++|||||||||
T Consensus 196 ~~~s~wLneP~FV~a~~~---------~d~VYFfF~E~a~E~~~~~k~~~sRVARVCk~D~GG~~r~L~~~WtSFlKarL 266 (565)
T 3oky_B 196 KHDSKWLKEPYFVQAVDY---------GDYIYFFFREIAVEYNTMGKVVFPRVAQVCKNDMGGSQRVLEKQWTSFLKARL 266 (565)
T ss_dssp TTCTTTCSSCEEEEEEEE---------TTEEEEEEEEECGGGSSSSCCEEEEEEEEETTCCCCCSSSSTTBCSSCEEEEB
T ss_pred ccchhhhcCCceeEEEee---------CCEEEEEEccccccccccCcceeeeEeeeCCCCCCCcccccccceeEEEEEEE
Confidence 589999999999998543 789999997 4678999999999999999 6899999999999999
Q ss_pred cCCCCCCCCccCccccceeeec--c----------------CCCceeEEeee-eccccccCCCCeeeeecCCCeeeec-C
Q psy6150 77 NCSVPGDYPFYFDEIRLPEDCV--N----------------LQDPYCAWDLK-LRKDCVNLQDPYCAWDLKLRKCVPY-Q 136 (148)
Q Consensus 77 ~Cs~pg~~~~~Fn~lqdv~~l~--~----------------~~~~~c~ysl~-i~~~~~~f~Gp~~~~~~~~~~wv~~-q 136 (148)
+|++||+.++|||+||+|+.+. + .+++.|||+|. |++ +|+|||++.++++.+|+++ +
T Consensus 267 ~Cs~pg~~~~~fn~lQav~~~~~~~~~~~~YgvFtt~~~~~~~SAVC~y~l~dI~~---~F~G~fk~~~~~~~~W~~~~~ 343 (565)
T 3oky_B 267 NCSVPGDSHFYFNILQAVTDVIRINGRDVVLATFSTPYNSIPGSAVCAYDMLDIAN---VFTGRFKEQKSPDSTWTPVPD 343 (565)
T ss_dssp CCEECSSSCEECCEEEEECCCEEETTEEEEEEEEECCSSSSCCEEEEEEEHHHHHH---HTTSCBEEESSTTSCEEECCG
T ss_pred EcCCCCCCCccccceeeeeeeeccCCCCEEEEEEccCCCCCCccEEeeccHHHHHH---HhcCCcccccCCCcceEecCC
Confidence 9999999899999999986332 1 23556999999 999 9999999999999999997 7
Q ss_pred CCcee
Q psy6150 137 ERTLE 141 (148)
Q Consensus 137 ~~~~~ 141 (148)
++||+
T Consensus 344 ~~vP~ 348 (565)
T 3oky_B 344 ERVPK 348 (565)
T ss_dssp GGSCS
T ss_pred CcCCC
Confidence 87764
No 2
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=100.00 E-value=1.7e-35 Score=262.57 Aligned_cols=130 Identities=28% Similarity=0.459 Sum_probs=113.6
Q ss_pred cccCCCCCCCceeeeeeeEeecCCCCC-CceEEEEEec--------CceeeeeeecccccCCCCCcccCcceehhhhhhh
Q psy6150 6 TWSTPSLDEVNLCCRGSVRFQSTSIDG-VDHVWTQLTK--------KNAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRL 76 (148)
Q Consensus 6 ~~~~~wL~~P~Fv~~~~i~f~~~s~d~-ddkvY~ff~~--------~k~~~sRVaRVCknD~GG~~~L~~kWTTFlKArL 76 (148)
+++..||++|+||++..| +.+.+. +|+|||||.+ ++.++||||||||||.||+++|+++||||+||||
T Consensus 190 ~~d~~~l~~p~FV~s~~i---~~~~~~~~~~VYFff~e~~~e~~~~~~~~~SRVaRvCk~D~GG~~~l~~~wtSflka~L 266 (495)
T 1q47_A 190 QHDSRWLNDPRFISAHLI---PESDNPEDDKVYFFFRENAIDGEHSGKATHARIGQICKNDFGGHRSLVNKWTTFLKARL 266 (495)
T ss_dssp SSCTTTCSSCEEEEEEEE---CCSSSGGGCEEEEEEEEECCCCSSCCCCEEEEEEEEETTCCCBSSSSBTBCSSCEEEEB
T ss_pred ccCcccccCcceEEEEEe---cccccCCCCEEEEEEEeecccccccCcceEEEEEEECCCCCCccccchhccceEEEEEE
Confidence 367999999999999887 433333 7899999973 6789999999999999999999999999999999
Q ss_pred cCCCCCCC--CccCccccceeeeccC-------------------CCceeEEeee-eccccccCCCCeeeeecCCCeeee
Q psy6150 77 NCSVPGDY--PFYFDEIRLPEDCVNL-------------------QDPYCAWDLK-LRKDCVNLQDPYCAWDLKLRKCVP 134 (148)
Q Consensus 77 ~Cs~pg~~--~~~Fn~lqdv~~l~~~-------------------~~~~c~ysl~-i~~~~~~f~Gp~~~~~~~~~~wv~ 134 (148)
+|+.||+. +++||+||+++.+..+ +++.|||+|. |++ +|+|||++.++++.+|.+
T Consensus 267 ~Cs~~g~~g~~~~fn~lq~v~~~~~~~~~~~vlygvFst~~~~~~~SAvC~f~l~~I~~---~F~g~~~~~~~~~~~w~~ 343 (495)
T 1q47_A 267 ICSVPGPNGIDTHFDELQDVFLMNSKDPKNPIVYGVFTTSSNIFKGSAVCMYSMSDVRR---VFLGPYAHRDGPNYQWVP 343 (495)
T ss_dssp CCEECCTTSCCEECCEEEEEEEECCSSTTCCEEEEEEECSCSSSCCEEEEEECHHHHHH---HHTSCBEECSSTTBCCEE
T ss_pred EccCCCCCCCccccCceeeEEEeccCCCCCcEEEEEEecCCCCCCCcEEEEeEHHHHHH---HHhhhhhhccCCccceee
Confidence 99999874 7999999999965432 2334999999 999 999999999999999999
Q ss_pred cCCCcee
Q psy6150 135 YQERTLE 141 (148)
Q Consensus 135 ~q~~~~~ 141 (148)
|+|++|.
T Consensus 344 ~~g~vp~ 350 (495)
T 1q47_A 344 YQGRVPY 350 (495)
T ss_dssp CCSCCCS
T ss_pred ecCccCC
Confidence 9999875
No 3
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=100.00 E-value=1e-33 Score=259.62 Aligned_cols=131 Identities=27% Similarity=0.441 Sum_probs=114.8
Q ss_pred cccCCCCCCCceeeeeeeEeecCCCCCCceEEEEEec--------CceeeeeeecccccCCCCCcccCcceehhhhhhhc
Q psy6150 6 TWSTPSLDEVNLCCRGSVRFQSTSIDGVDHVWTQLTK--------KNAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLN 77 (148)
Q Consensus 6 ~~~~~wL~~P~Fv~~~~i~f~~~s~d~ddkvY~ff~~--------~k~~~sRVaRVCknD~GG~~~L~~kWTTFlKArL~ 77 (148)
++++.||+||.||++..|.. .+.+.+|+|||||++ ++.++||||||||||.||++.|+++||||+||||+
T Consensus 198 ~~~s~~l~~P~FV~s~~i~~--~~~~~~d~VYFFFrE~a~e~~~~~k~~~SRVaRVCknD~GG~~~L~~~wtSFlKarL~ 275 (667)
T 4gz8_A 198 QHDSRWLNDPRFISAHLIPE--SDNPEDDKVYFFFRENAIDGEHSGKATHARIGQICKNDFGGHRSLVNKWTTFLKARLI 275 (667)
T ss_dssp SSCTTTCSSCEEEEEEEECC--SSSTTSCEEEEEEEEECCCC-CCCCCEEEEEEEEETTCCCCSSSSTTBCSSCEEEEEC
T ss_pred ecccccccCCcceeeeeecc--cccCCCCEEEEEEEEEeeccCCcccceeeeeeeeCCCCCCCccccccceeeEEEEEEE
Confidence 57899999999999988832 234457899999973 57899999999999999999999999999999999
Q ss_pred CCCCCC--CCccCccccceeeeccC-------------------CCceeEEeee-eccccccCCCCeeeeecCCCeeeec
Q psy6150 78 CSVPGD--YPFYFDEIRLPEDCVNL-------------------QDPYCAWDLK-LRKDCVNLQDPYCAWDLKLRKCVPY 135 (148)
Q Consensus 78 Cs~pg~--~~~~Fn~lqdv~~l~~~-------------------~~~~c~ysl~-i~~~~~~f~Gp~~~~~~~~~~wv~~ 135 (148)
|+.||+ ++++||+||+++.+... +++.|||+|. |++ +|+|||++.+++..+|.++
T Consensus 276 Cs~pg~~~~~~~fn~Lq~v~~~~~~~~~~~vlYaVFtt~~~~~~~SAVC~FsL~dI~~---~F~g~~k~~~~~~~~w~~~ 352 (667)
T 4gz8_A 276 CSVPGPNGIDTHFDELQDVFLMNSKDPKNPIVYGVFTTSSNIFKGSAVCMYSMSDVRR---VFLGPYAHRDGPNYQWVPY 352 (667)
T ss_dssp CEECCTTSCCEECCEEEEEEEECCSCTTCCEEEEEEECSCSSSCCEEEEEEEHHHHHH---HHHSCBEECSSTTBCCEEC
T ss_pred eecCCCCcccchhHhhhheeEccCCCCCCcEEEEEecCCCCCCCCcEEEEEEcHHHHH---HHhhhhhcccCCCcccccc
Confidence 999987 67899999999865432 2345999999 999 9999999999999999999
Q ss_pred CCCcee
Q psy6150 136 QERTLE 141 (148)
Q Consensus 136 q~~~~~ 141 (148)
.+++|.
T Consensus 353 ~~~vp~ 358 (667)
T 4gz8_A 353 QGRVPY 358 (667)
T ss_dssp CSCCCS
T ss_pred cCCcCC
Confidence 999875
No 4
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=99.98 E-value=1.8e-33 Score=255.58 Aligned_cols=106 Identities=21% Similarity=0.332 Sum_probs=92.1
Q ss_pred CCCCCCCceeeeeeeEeecCCCCCCceEEEEEec--------CceeeeeeecccccCCCCCcc-cCcceehhhhhhhcCC
Q psy6150 9 TPSLDEVNLCCRGSVRFQSTSIDGVDHVWTQLTK--------KNAVYSRVARVCKSDKGGPHH-FGDRWTTFLKSRLNCS 79 (148)
Q Consensus 9 ~~wL~~P~Fv~~~~i~f~~~s~d~ddkvY~ff~~--------~k~~~sRVaRVCknD~GG~~~-L~~kWTTFlKArL~Cs 79 (148)
++|||||+||+|..| +++.+.||||||||++ ++.++||||||||||.||.+. |+++|||||||||+|+
T Consensus 172 ~~wL~eP~FV~s~~i---~~~~~~~d~VYFFFrE~a~e~~~~~~~~~SRVARVCknD~GG~~~ll~~~WTSFlKarL~Cs 248 (590)
T 3nvq_A 172 DTVMQNPQFIKATIV---HQDQAYDDKIYYFFREDNPDKNPEAPLNVSRVAQLCRGDQGGESSLSVSKWNTFLKAMLVCS 248 (590)
T ss_dssp TTSCSSCEEEEEEEE---CCSSGGGCEEEEEEEEECSCCCTTSCSEEEEEEEEETTCCCBSSTTTTTBCSCCEEEEBCCB
T ss_pred cchhcCCceeEEEec---cccCCCCCEEEEEecccccccccccceeeeeeeeecCCCccccchhhhcceeEEEEEEEECC
Confidence 689999999999999 5555568999999984 356799999999999999885 5999999999999999
Q ss_pred CCCCCCccCccccceeeeccCC------------------CceeEEeee-eccccccCCCC
Q psy6150 80 VPGDYPFYFDEIRLPEDCVNLQ------------------DPYCAWDLK-LRKDCVNLQDP 121 (148)
Q Consensus 80 ~pg~~~~~Fn~lqdv~~l~~~~------------------~~~c~ysl~-i~~~~~~f~Gp 121 (148)
.||+ ++|||+||||+.++.+. ++.|||+|. |++ +|+|+
T Consensus 249 ~pg~-~~~FN~LQ~a~~~~~~~~~~~~~vlYgVFt~~~~~SAVCafsl~dI~~---~F~~~ 305 (590)
T 3nvq_A 249 DAAT-NKNFNRLQDVFLLPDPSGQWRDTRVYGVFSNPWNYSAVCVYSLGDIDK---VFRTS 305 (590)
T ss_dssp CTTT-CCBCCEEEEEEEECCTTCCGGGCEEEEEEECTTCCEEEEEEEHHHHHH---HHHHC
T ss_pred CCCC-CCCccceeeEEEccccCCCCCCCEEEEEEecCCCCceEEEeeHHHHHH---HHhcC
Confidence 9986 78999999999766532 234999999 999 99976
No 5
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=99.98 E-value=2.4e-33 Score=256.01 Aligned_cols=132 Identities=28% Similarity=0.453 Sum_probs=110.5
Q ss_pred cccCCCCCCCceeeeeeeEeecCCCC-CCceEEEEEec--------CceeeeeeecccccCCCCCcccCcceehhhhhhh
Q psy6150 6 TWSTPSLDEVNLCCRGSVRFQSTSID-GVDHVWTQLTK--------KNAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRL 76 (148)
Q Consensus 6 ~~~~~wL~~P~Fv~~~~i~f~~~s~d-~ddkvY~ff~~--------~k~~~sRVaRVCknD~GG~~~L~~kWTTFlKArL 76 (148)
.++++||++|.||++.+|....++.+ .+|+|||||++ +|.++||||||||||.||++.|+++||||+||||
T Consensus 179 e~~~~~L~~p~FV~s~~i~~~~~~~~~~~~~VYFff~e~~~e~~~~~k~~~SRVaRvCk~D~GG~~~l~~~wtSflka~L 258 (663)
T 1olz_A 179 EYAIPWLNEPSFVFADVIRKSPDSPDGEDDRVYFFFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLKARL 258 (663)
T ss_dssp CSSTTTCSSCEEEEEEEECCCC----CCCCEEEEEEEEECSSCBCSSCCEEEEEEEEETTCCCCSSSSTTSCSSCEEEEE
T ss_pred cchhhhccCCceeEeeeeeccccccccCCCEEEEEEeeccccccccCcceeeEEEEECCCCCCcccccccccceEEEEeE
Confidence 46899999999999988844333333 47999999983 5789999999999999999999999999999999
Q ss_pred cCCCCCCCCccCccccceeeeccC-------------------CCceeEEeee-eccccccCC-CCeeee---ecCCCee
Q psy6150 77 NCSVPGDYPFYFDEIRLPEDCVNL-------------------QDPYCAWDLK-LRKDCVNLQ-DPYCAW---DLKLRKC 132 (148)
Q Consensus 77 ~Cs~pg~~~~~Fn~lqdv~~l~~~-------------------~~~~c~ysl~-i~~~~~~f~-Gp~~~~---~~~~~~w 132 (148)
+|+.|+ .+++||+|||++.+..+ +++.|||+|. |++ +|+ |+|++. +.++.+|
T Consensus 259 ~Cs~~~-~~~~fn~lq~~~~~~~~~~~~~vlygvFst~~~~~~~SAvC~f~l~~I~~---~F~~g~~~~~~~~~~~~~~w 334 (663)
T 1olz_A 259 ICSRPD-SGLVFNVLRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCAYNLSTAEE---VFSHGKYMQSTTVEQSHTKW 334 (663)
T ss_dssp CCEEGG-GTEECCEEEEEEEECCTTCSSCEEEEEEECSSSCSSEEEEEEEEHHHHHH---HHHHSCBEEEECCSTTCCEE
T ss_pred EecCCC-CCcccCceeeEEEeccCCCCCCEEEEEEccCCCCCCCcEEEEEEHHHHHH---HHhhccccccccccCCCcee
Confidence 999995 47899999999966432 2234999999 999 998 999986 5678899
Q ss_pred eecCCCcee
Q psy6150 133 VPYQERTLE 141 (148)
Q Consensus 133 v~~q~~~~~ 141 (148)
++|+++||+
T Consensus 335 ~~~~~~vp~ 343 (663)
T 1olz_A 335 VRYNGPVPK 343 (663)
T ss_dssp EECCSCCCS
T ss_pred EecCCCCCC
Confidence 999999873
No 6
>3nvx_A Protein A39; beta-propeller, viral protein; HET: NAG; 2.00A {Vaccinia virus} PDB: 3nvn_A*
Probab=99.96 E-value=1.7e-31 Score=233.01 Aligned_cols=113 Identities=20% Similarity=0.397 Sum_probs=90.7
Q ss_pred CCCCCCCceeeeeeeEeecCCCCCCceEEEEEec-----CceeeeeeecccccCCCCCcccC-cceehhhhhhhcCCCCC
Q psy6150 9 TPSLDEVNLCCRGSVRFQSTSIDGVDHVWTQLTK-----KNAVYSRVARVCKSDKGGPHHFG-DRWTTFLKSRLNCSVPG 82 (148)
Q Consensus 9 ~~wL~~P~Fv~~~~i~f~~~s~d~ddkvY~ff~~-----~k~~~sRVaRVCknD~GG~~~L~-~kWTTFlKArL~Cs~pg 82 (148)
+.|||||+||++... + .+.||||||||++ .+.++||||||||||.||+++|+ +||||||||||+|++||
T Consensus 137 d~wLn~P~FV~s~~~---~--~~dddkVYFFFrE~a~e~~~~~~SRVARVCknD~GG~~~L~~~kWTSFLKArL~Cs~pG 211 (383)
T 3nvx_A 137 DNVIPKDGLRGAFVD---K--DGTYDKVYILFTDTIGSKRIVKIPYIAQMCLNDEGGPSSLSSHRWSTFLKVELECDIDG 211 (383)
T ss_dssp TTSSCTTCCSEEEEE---E--ETTEEEEEEEEEEEECSSSCEEEEEEEEEETTCCCCSSGGGTTBCSSCEEEEECCEETT
T ss_pred ccccCCcceeEEEcc---c--cCCCCEEEEEEEeecccccceeeehhhhcCccCCCCcccchhcceeeEEEEEEECCCCC
Confidence 689999999987432 2 2346999999984 23578999999999999999885 99999999999999998
Q ss_pred CCCccCccccceeeeccC--------------CCceeEEeee-eccccccCCCCeeeeecCCCeeeecCCCcee
Q psy6150 83 DYPFYFDEIRLPEDCVNL--------------QDPYCAWDLK-LRKDCVNLQDPYCAWDLKLRKCVPYQERTLE 141 (148)
Q Consensus 83 ~~~~~Fn~lqdv~~l~~~--------------~~~~c~ysl~-i~~~~~~f~Gp~~~~~~~~~~wv~~q~~~~~ 141 (148)
+. +||.+|+++ +... +++.|+|+|. |++ +|+||+ |..|+++||+
T Consensus 212 ~~--~~nllq~~~-~~~~~~~vlYgvFss~~~~SAVC~ysl~dI~~---~F~g~~---------~~~~~~~vP~ 270 (383)
T 3nvx_A 212 RS--YRQIIHSRT-IKTDNDTILYVFFDSPYSKSALCTYSMNTIKQ---SFSTSK---------LEGYTKQLPS 270 (383)
T ss_dssp EE--CCEEEEEEE-EECSSCEEEEEEEECSSSEEEEEEEEHHHHHH---HHHHCC---------BTTCCSCCCS
T ss_pred cc--cccEEEEEE-ecCCCCcEEEEEecCCCCCcEEEeeeHHHHHH---HhcCCc---------ccccCCCCCC
Confidence 63 789999987 3332 2455999999 999 999984 4456666654
No 7
>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A
Probab=99.84 E-value=2.7e-22 Score=184.55 Aligned_cols=107 Identities=8% Similarity=0.166 Sum_probs=80.7
Q ss_pred cCCCC--CCCceeeeeeeEeecCCCCCCceEEEEEec-----CceeeeeeecccccCCCCCcccCcceehhhhhhhcCCC
Q psy6150 8 STPSL--DEVNLCCRGSVRFQSTSIDGVDHVWTQLTK-----KNAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSV 80 (148)
Q Consensus 8 ~~~wL--~~P~Fv~~~~i~f~~~s~d~ddkvY~ff~~-----~k~~~sRVaRVCknD~GG~~~L~~kWTTFlKArL~Cs~ 80 (148)
+..|+ ++|.||++ .+.+|+|||||.+ ++.++||||||||||. +||||+||||+|+.
T Consensus 217 ~~~~~~~~~~~fV~~---------f~~~~~vYF~f~e~~~~~~~~~~SRvaRvCk~D~--------~wtSflka~L~Cs~ 279 (727)
T 2uzx_B 217 LPEFRDSYPIKYVHA---------FESNNFIYFLTVQRETLDAQTFHTRIIRFCSINS--------GLHSYMEMPLECIL 279 (727)
T ss_dssp CGGGTTTSCEEEEEE---------EEETTEEEEEEEEBSSTTCSSBCCEEEEECCSSS--------CCCSCEEEEEEEEE
T ss_pred ccccccccCCCceee---------eecCCEEEEEEeeccccccccceeEEEEEecCCC--------CeeEEEEEEEEecC
Confidence 34566 67778775 2358899999984 5789999999999998 59999999999999
Q ss_pred CCC------CCccCccccceeeeccC-----------C---------------------CceeEEeee-eccccccCCCC
Q psy6150 81 PGD------YPFYFDEIRLPEDCVNL-----------Q---------------------DPYCAWDLK-LRKDCVNLQDP 121 (148)
Q Consensus 81 pg~------~~~~Fn~lqdv~~l~~~-----------~---------------------~~~c~ysl~-i~~~~~~f~Gp 121 (148)
||+ .+++||+||+++.+.++ + ++.|||+|. |++ +|+||
T Consensus 280 ~~~~~~r~~~~~~fn~lQa~~~~~~g~~La~~l~i~~~~~vlygVFs~~~~~~~~~~~~SAvC~f~l~~I~~---~F~~~ 356 (727)
T 2uzx_B 280 TEKRKKRSTKKEVFNILQAAYVSKPGAQLARQIGASLNDDILFAVFAQSKPDSAEPMDRSAMCAFPIKYVND---FFNKI 356 (727)
T ss_dssp C---------CEEECEEEEEEEECCCHHHHHHHTCCTTCCEEEEEEEEECTTSSCEEEEEEEEEEEHHHHHH---HHTCC
T ss_pred CCcccccccCCcCcCceeEEeecCCchhhhhhccCCCCCCEEEEEEcCCccccCCCCCCcEEEEEEHHHHHH---HHhhh
Confidence 985 46799999999855321 1 123999999 999 99999
Q ss_pred eeeeecCCCeeee
Q psy6150 122 YCAWDLKLRKCVP 134 (148)
Q Consensus 122 ~~~~~~~~~~wv~ 134 (148)
|++-....+.|++
T Consensus 357 ~~~~~~~~~~~~~ 369 (727)
T 2uzx_B 357 VNKNNVRCLQHFY 369 (727)
T ss_dssp ----CEECCHHHH
T ss_pred HhhcCcccccccc
Confidence 9986556777863
No 8
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=99.81 E-value=3.1e-21 Score=173.14 Aligned_cols=103 Identities=15% Similarity=0.231 Sum_probs=83.5
Q ss_pred ccCCCCCCCceeeeeeeEeecCCCCCCceEEEEEec------CceeeeeeecccccCCCCCcccCcceehhhhhhhcCCC
Q psy6150 7 WSTPSLDEVNLCCRGSVRFQSTSIDGVDHVWTQLTK------KNAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSV 80 (148)
Q Consensus 7 ~~~~wL~~P~Fv~~~~i~f~~~s~d~ddkvY~ff~~------~k~~~sRVaRVCknD~GG~~~L~~kWTTFlKArL~Cs~ 80 (148)
|.+.| +|.||++.. .+|+|||||.+ ++..++|||||||||. +||||+||||+|+.
T Consensus 194 ~~~~~--~~~FV~aF~---------~~~~VYF~f~e~~~~~~~~~~~sRvaRvCk~D~--------~w~Sy~k~~L~C~g 254 (528)
T 3ol2_B 194 RLSEY--SHHFVSAFA---------RGASAYFLFLRRDLQAQSRAFRAYVSRVCLRDQ--------HYYSYVELPLACEG 254 (528)
T ss_dssp CHHHH--CCEEEEEEE---------ETTEEEEEEEEECTTSTTCCEEEEEEEEESSCS--------SCTTCEEEEEESTT
T ss_pred ccccC--CCcEEEEEe---------cCCEEEEEEEEEcccccccccccceeeeeCCCC--------CeeEEEEEEEecCC
Confidence 45677 999999832 47899999973 3688999999999998 79999999999994
Q ss_pred CCCCCccCccccceeeeccC--------------------------------CCceeEEeee-eccccccCCCCeee-e-
Q psy6150 81 PGDYPFYFDEIRLPEDCVNL--------------------------------QDPYCAWDLK-LRKDCVNLQDPYCA-W- 125 (148)
Q Consensus 81 pg~~~~~Fn~lqdv~~l~~~--------------------------------~~~~c~ysl~-i~~~~~~f~Gp~~~-~- 125 (148)
+ +||+||+++.++.+ +++.|||+|. |++ +|+||+++ +
T Consensus 255 ~-----~fn~lQaa~~~~~g~~l~~~vly~vFs~~~~~~~~~~~~~~~~p~~~SAVC~f~l~~I~~---~f~~~~~~Cy~ 326 (528)
T 3ol2_B 255 G-----RYGLIQAAAVATSREVAHGEVLFAAFSSAAPPTVGRPPSAAAGASGASALCAFPLDEVDR---LANRTRDACYT 326 (528)
T ss_dssp T-----TSCEEEEEEEEEC---CCCSEEEEEEECBCCC-----CCBCCGGGCCEEEEEEEHHHHHH---HHHHHHHHHHH
T ss_pred C-----CCCceeEEEEccCCCccCCCEEEEEEecCCCCccccccccccCCCCccEEEEEEHHHHHH---HHhhhhhhhhc
Confidence 3 79999999966532 3456999999 999 99999987 2
Q ss_pred ------ecCCCeeeecC
Q psy6150 126 ------DLKLRKCVPYQ 136 (148)
Q Consensus 126 ------~~~~~~wv~~q 136 (148)
++....|+|+.
T Consensus 327 ~~~~~~~~~~~~~~p~~ 343 (528)
T 3ol2_B 327 REGRAEDGTEVAYIEYD 343 (528)
T ss_dssp STTTCSSSCCCEEECTT
T ss_pred cccccccCCcccceecC
Confidence 23456788764
No 9
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=99.79 E-value=4.5e-21 Score=171.48 Aligned_cols=97 Identities=12% Similarity=0.257 Sum_probs=75.7
Q ss_pred CCceeeeeeeEeecCCCCCCceEEEEEec-------------CceeeeeeecccccCCCCCcccCcceehhhhhhhcCCC
Q psy6150 14 EVNLCCRGSVRFQSTSIDGVDHVWTQLTK-------------KNAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSV 80 (148)
Q Consensus 14 ~P~Fv~~~~i~f~~~s~d~ddkvY~ff~~-------------~k~~~sRVaRVCknD~GG~~~L~~kWTTFlKArL~Cs~ 80 (148)
+|.||++ .+.++.|||||.+ ++.++||||||||||. +||||+||||+|+.
T Consensus 210 ~~~fV~a---------F~~~~~VYF~~~e~~~~~~~~e~~~~~~~~~SRvaRvCk~D~--------~wtSflka~L~Cs~ 272 (539)
T 3al9_A 210 DIFYIYG---------FASGGFVYFLTVQPETPDGMAINSAGDLFYTSRIVRLCKDDP--------KFHSYVSLPFGCTR 272 (539)
T ss_dssp CCEEEEE---------EEETTEEEEEEEEECCC----------CBEEEEEEEEESSCT--------TCTTCEEEEEEEEE
T ss_pred CcceEEE---------EecCCEEEEEEEecccccccccccccccceeeEEEEEcCCcc--------ccceEEEEEeecCC
Confidence 5566765 2457899999973 3678999999999995 89999999999999
Q ss_pred CCCCCccCccccceeeeccC--------------------------------CCceeEEeee-eccccccCCCC----ee
Q psy6150 81 PGDYPFYFDEIRLPEDCVNL--------------------------------QDPYCAWDLK-LRKDCVNLQDP----YC 123 (148)
Q Consensus 81 pg~~~~~Fn~lqdv~~l~~~--------------------------------~~~~c~ysl~-i~~~~~~f~Gp----~~ 123 (148)
||. +||+||+++.+.++ +++.|||+|. |++ +|+|+ |+
T Consensus 273 ~g~---~fn~lqa~~~~~~g~~La~~l~~~~~~~vlygvFs~~~~~~~~~~~~SAvC~f~l~~I~~---~F~~~~~~cf~ 346 (539)
T 3al9_A 273 AGV---EYRLLQAAYLAKPGEALAQAFNISSDEDVLFAIFSKGQKQYHHPPDDSALCAFPIRAINL---QIKERLQSCYH 346 (539)
T ss_dssp TTE---EEEEEEEEEEECCCHHHHHHHTCCTTSCEEEEEEEEBSBCSSSCCSCEEEEEEEHHHHHH---HHHHHHHHHHT
T ss_pred CCc---CcchhheeeeccccccchhhcccCCCCCEEEEEEecCccccCCCCCCCEEEEEEHHHHHH---HHHhhHHhhhc
Confidence 974 89999999854321 2345999999 999 99998 44
Q ss_pred eeecCCCeee
Q psy6150 124 AWDLKLRKCV 133 (148)
Q Consensus 124 ~~~~~~~~wv 133 (148)
.-..+..+|.
T Consensus 347 ~~~~~~~~w~ 356 (539)
T 3al9_A 347 GEGNLELNWL 356 (539)
T ss_dssp TCSBCCCHHH
T ss_pred cCCcccccee
Confidence 4444566675
No 10
>4fww_A Macrophage-stimulating protein receptor; beta-propeller, cysteine-knot, receptor tyrosine kinase, MAC stimulating protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo sapiens}
Probab=99.78 E-value=1.3e-20 Score=165.96 Aligned_cols=97 Identities=10% Similarity=0.099 Sum_probs=76.7
Q ss_pred CCceEEEEEe-------cCceeeeeeecccccCCCCCcccCcceehhhhhhhcCCCCCCC--------CccCccccceee
Q psy6150 32 GVDHVWTQLT-------KKNAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDY--------PFYFDEIRLPED 96 (148)
Q Consensus 32 ~ddkvY~ff~-------~~k~~~sRVaRVCknD~GG~~~L~~kWTTFlKArL~Cs~pg~~--------~~~Fn~lqdv~~ 96 (148)
.+++|||||. .++.++||||||||||.| |+||+|+||+|+.++.. +++||.||+++.
T Consensus 214 ~~~~vYF~f~e~~~~~~~~~~~~SRvaRVCk~D~~--------~~Sy~e~~L~C~~~~~~~~~~~~~~~~~yn~lQ~a~~ 285 (527)
T 4fww_A 214 TGAFVYFLTVQPASVTDDPSALHTRLARLSATEPE--------LGDYRELVLDCRFAPKLVPRGSPEGGQPYPVLQVAHS 285 (527)
T ss_dssp ETTEEEEEEEEESSTTSCTTSEEEEEEEEESSSSC--------CTTCEEEEEEEEECC----------CEEECEEEEEEE
T ss_pred cCCEEEEEEEEEccccCCCcccceeeeEEcccCCC--------cceEEEEEEEeeccccccccccccCCcccceeeeEee
Confidence 4678999997 367899999999999976 99999999999988653 356999999874
Q ss_pred ecc--------------------------------CCCceeEEeee-eccccccCCCCeeeeecCCCeeeecCCCc
Q psy6150 97 CVN--------------------------------LQDPYCAWDLK-LRKDCVNLQDPYCAWDLKLRKCVPYQERT 139 (148)
Q Consensus 97 l~~--------------------------------~~~~~c~ysl~-i~~~~~~f~Gp~~~~~~~~~~wv~~q~~~ 139 (148)
.+. .+++.|||+|. |++ +|+|++.+-.....+|..+.+++
T Consensus 286 ~~~g~~La~~l~~~~~~~vly~vFs~~~~~~~~~~~~SAvC~f~m~~I~~---~F~~~~~~c~~~~~~~~~~~~~~ 358 (527)
T 4fww_A 286 APVGAQLATELSIAEGQEVLFGVFVTGKDGGPGVGPNSVVCAFPIDLLDT---LIDEGVERCCESPVHPGLRRGLD 358 (527)
T ss_dssp EECCHHHHHHHTSCTTCEEEEEEEECCC----CCSCSCEEEEEEHHHHHH---HHHHHHHHHHSSSCCTTCBCCCT
T ss_pred cCccchhhhhcccCCCCCEEEEEEeCccCCCCCCCCccEEEEEEHHHHHH---HHHhhhhhcccCCCCCCceeccC
Confidence 321 12567999999 999 99999988777777775555544
No 11
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=99.68 E-value=2.3e-18 Score=158.50 Aligned_cols=89 Identities=13% Similarity=0.272 Sum_probs=72.6
Q ss_pred CCCceEEEEEecC-------------ceeeeeeecccccCCCCCcccCcceehhhhhhhcCCCCCCCCccCccccceeee
Q psy6150 31 DGVDHVWTQLTKK-------------NAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDYPFYFDEIRLPEDC 97 (148)
Q Consensus 31 d~ddkvY~ff~~~-------------k~~~sRVaRVCknD~GG~~~L~~kWTTFlKArL~Cs~pg~~~~~Fn~lqdv~~l 97 (148)
+.++.|||||.+. +..+||||||||+| .+||||+||||+|+.+|. +||.||+++.+
T Consensus 217 ~~~~fVYFlf~q~~~~~~~~~~~~~~~~~~SRVaRvCk~D--------~~wtSylka~L~C~~~g~---~fn~lQaa~~~ 285 (681)
T 3oky_A 217 ASGGFVYFLTVQPETPDGMAINSAGDLFYTSRIVRLCKDD--------PKFHSYVSLPFGCTRAGV---EYRLLQAAYLA 285 (681)
T ss_dssp EETTEEEEEEEEECCC----------CCEEEEEEEEESSC--------TTCTTCEEEEEEEEETTE---EECEEEEEEEE
T ss_pred EcCCEEEEEEEeecccccccccccccceeeEEEEEecCCC--------CCeeEEEEEEEecCCCCc---CCCceeEEEec
Confidence 3467899998641 46889999999999 499999999999999874 79999999965
Q ss_pred ccC--------------------------------CCceeEEeee-eccccccCCCC----eeeeecCCCeee
Q psy6150 98 VNL--------------------------------QDPYCAWDLK-LRKDCVNLQDP----YCAWDLKLRKCV 133 (148)
Q Consensus 98 ~~~--------------------------------~~~~c~ysl~-i~~~~~~f~Gp----~~~~~~~~~~wv 133 (148)
.++ +++.|||+|. |++ +|+|+ |+.....+..|.
T Consensus 286 ~pg~~LA~~lg~~~~~~vlygVFs~~~~~~~~~~~~SAVCaF~l~~I~~---~f~~~~~~Cy~~~~~~~~~w~ 355 (681)
T 3oky_A 286 KPGEALAQAFNISSDEDVLFAIFSKGQKQYHHPPDDSALCAFPIRAINL---QIKERLQSCYHGEGNLELNWL 355 (681)
T ss_dssp CCCHHHHHHHTCCTTSCEEEEEEESBSSCSSSCCSCEEEEEEEHHHHHH---HHHHHHHHHHTTCSBCCCHHH
T ss_pred cCcchhhhhcccCccCCEEEEEEecCCcCCCCCCCceEEEEEEHHHHHH---HHhhhhhhhhcCCCCCCcccc
Confidence 321 3445999999 999 99998 887776677775
No 12
>3nvn_B Plexin-C1; beta-propeller, signaling, viral protein-signaling protein C; HET: NDG NAG; 2.26A {Homo sapiens} PDB: 3nvq_B*
Probab=98.76 E-value=2.8e-09 Score=95.41 Aligned_cols=70 Identities=9% Similarity=-0.012 Sum_probs=53.2
Q ss_pred cccCCCCC---CC-ceeeeeeeEeecCCCCCCceEEEEEe----cCc--eeeeeeecccccCCCCCcccCcceehhhhhh
Q psy6150 6 TWSTPSLD---EV-NLCCRGSVRFQSTSIDGVDHVWTQLT----KKN--AVYSRVARVCKSDKGGPHHFGDRWTTFLKSR 75 (148)
Q Consensus 6 ~~~~~wL~---~P-~Fv~~~~i~f~~~s~d~ddkvY~ff~----~~k--~~~sRVaRVCknD~GG~~~L~~kWTTFlKAr 75 (148)
++++.||+ +| +||.+ .+.++.|||+|. .++ ..+||||||||+|. + ++|+||+
T Consensus 185 ~~~~~~~~~~~~~~~fV~a---------f~~~~~vyf~~y~y~~~s~~~~~~sriaRvCk~D~--------~-~sy~e~~ 246 (476)
T 3nvn_B 185 ELGRLKLCEGAGSLHFVDA---------FLWNGSIYFPYYPYNYTSGAATGWPSMARIAQSTE--------V-LFQGQAS 246 (476)
T ss_dssp TTSEEEBCTTSCCEEECCC---------EECSSEEEEEEEEEETTTTEECSCCEEEEEESSSS--------C-CEEEEEE
T ss_pred hhcceeeccCCCCceeeee---------hhcCceeEEEEEeeccccCCccceeeEEEEeecCC--------C-cEEEEEE
Confidence 45667888 77 77765 235678898764 244 58999999999996 2 7899999
Q ss_pred hcCCCCCCCCccCcccccee
Q psy6150 76 LNCSVPGDYPFYFDEIRLPE 95 (148)
Q Consensus 76 L~Cs~pg~~~~~Fn~lqdv~ 95 (148)
|+|+.++.. .||.||++.
T Consensus 247 L~C~~~~~~--~y~ll~slg 264 (476)
T 3nvn_B 247 LDCGHGHPD--GRRLLLSSS 264 (476)
T ss_dssp ECCCSSCSS--CCCEEEEEE
T ss_pred EeccCCCCC--CcceEEecC
Confidence 999997643 388888775
No 13
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=22.42 E-value=30 Score=30.66 Aligned_cols=28 Identities=21% Similarity=0.521 Sum_probs=24.3
Q ss_pred eccccccCCCCeeeeecCCCeeeecCCC
Q psy6150 111 LRKDCVNLQDPYCAWDLKLRKCVPYQER 138 (148)
Q Consensus 111 i~~~~~~f~Gp~~~~~~~~~~wv~~q~~ 138 (148)
.+.+|+.-.+|||.|....++|+.+.+.
T Consensus 486 sC~~Cl~arDPyCgWc~~~~~C~~~~~C 513 (539)
T 3al9_A 486 TCGECLSSGDPHCGWCALHNMCSRRDKC 513 (539)
T ss_dssp SHHHHTTSCCTTCEEEGGGTEEECGGGS
T ss_pred CHHHHhcCCCCCCceecCCCceechhhc
Confidence 5679999999999999999999987543
No 14
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=21.57 E-value=35 Score=31.09 Aligned_cols=26 Identities=42% Similarity=0.961 Sum_probs=23.0
Q ss_pred eccccccCCCCeeeeecCCCeeeecC
Q psy6150 111 LRKDCVNLQDPYCAWDLKLRKCVPYQ 136 (148)
Q Consensus 111 i~~~~~~f~Gp~~~~~~~~~~wv~~q 136 (148)
.+.+|+.-.+|||.|.+..++|+.+.
T Consensus 487 sC~~Cl~arDPyCgW~~~~~~C~~~~ 512 (663)
T 1olz_A 487 TCEDCVLARDPYCAWSPPTATCVALH 512 (663)
T ss_dssp SHHHHHHTTCTTEEEETTTTEEEETT
T ss_pred CHHHHhcCCCCCccccCCCCceeCcc
Confidence 46789999999999999999998875
Done!