RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6150
(148 letters)
>3nvx_A Protein A39; beta-propeller, viral protein; HET: NAG; 2.00A
{Vaccinia virus} PDB: 3nvn_A*
Length = 383
Score = 65.6 bits (159), Expect = 2e-13
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 44 NAVYSRVARVCKSDKGGPHHF-GDRWTTFLKSRLNCSVPGDYPFY 87
+A++C +D+GGP RW+TFLK L C + G
Sbjct: 172 IVKIPYIAQMCLNDEGGPSSLSSHRWSTFLKVELECDIDGRSYRQ 216
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 58.2 bits (139), Expect = 7e-11
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 44 NAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDYPFYFDEIR 92
+ R+ARVCK D+GG +WT+FLK+RL CS P F+ +R
Sbjct: 226 RVLIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRPDS-GLVFNVLR 273
Score = 25.9 bits (55), Expect = 6.6
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 114 DCVNLQDPYCAWDLKLRKCVPYQERT 139
DCV +DPYCAW CV +
Sbjct: 490 DCVLARDPYCAWSPPTATCVALHQTE 515
Score = 25.9 bits (55), Expect = 6.9
Identities = 11/41 (26%), Positives = 13/41 (31%)
Query: 96 DCVNLQDPYCAWDLKLRKDCVNLQDPYCAWDLKLRKCVPYQ 136
DCV +DPYCAW Q + L
Sbjct: 490 DCVLARDPYCAWSPPTATCVALHQTESPSRGLIQEMSGDAS 530
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A
{Mus musculus} SCOP: b.69.12.1
Length = 495
Score = 55.8 bits (133), Expect = 4e-10
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 44 NAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDYPFYFDEIRL 93
A ++R+ ++CK+D GG ++WTTFLK+RL CSVPG L
Sbjct: 234 KATHARIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTHFDEL 283
>3oky_B Putative uncharacterized protein; transmembrane, ligand,
SEMA-domain, cell-CELL signalling, SI protein; HET: NAG;
2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Length = 565
Score = 52.4 bits (124), Expect = 6e-09
Identities = 27/49 (55%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 44 NAVYSRVARVCKSDKGGPHHF-GDRWTTFLKSRLNCSVPGDYPFYFDEI 91
V+ RVA+VCK+D GG +WT+FLK+RLNCSVPGD FYF+ +
Sbjct: 233 KVVFPRVAQVCKNDMGGSQRVLEKQWTSFLKARLNCSVPGDSHFYFNIL 281
Score = 41.3 bits (95), Expect = 4e-05
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 105 CAWDLKLRKDCVNLQDPYCAWDLKLRKCVPYQERT 139
C K +K C+ +DPYC W + C +
Sbjct: 500 CERHGKCKKTCIASRDPYCGWVRESGSCAHLSPLS 534
Score = 31.6 bits (70), Expect = 0.085
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 95 EDCVNLQDPYCAWDLKLRKDCVNLQD 120
+ C+ +DPYC W + C +L
Sbjct: 508 KTCIASRDPYCGWVRESGS-CAHLSP 532
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 52.3 bits (124), Expect = 6e-09
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 44 NAVYSRVARVCKSDKGGPHHF-GDRWTTFLKSRLNCSVPGDYPFYFDEIR 92
SRVA++C+ D+GG +W TFLK+ L CS F+ ++
Sbjct: 212 PLNVSRVAQLCRGDQGGESSLSVSKWNTFLKAMLVCSDAAT-NKNFNRLQ 260
Score = 26.9 bits (58), Expect = 2.9
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 112 RKDCVNLQDPYCAWDLKLRKCVPYQERTLELLFCFTQ 148
C+ +DPYC WD + ER++ +
Sbjct: 456 CHGCLMSRDPYCGWDQGRCISIYSSERSVLQSINPAE 492
Score = 26.9 bits (58), Expect = 3.5
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 96 DCVNLQDPYCAWDLKLRKDCVNLQDPYCAW 125
C+ +DPYC WD + +
Sbjct: 458 GCLMSRDPYCGWDQGRCISIYSSERSVLQS 487
>4fww_A Macrophage-stimulating protein receptor; beta-propeller,
cysteine-knot, receptor tyrosine kinase, MAC stimulating
protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo
sapiens}
Length = 527
Score = 40.4 bits (93), Expect = 9e-05
Identities = 5/49 (10%), Positives = 19/49 (38%)
Query: 44 NAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDYPFYFDEIR 92
+A+++R+AR+ ++ + +L + + ++
Sbjct: 233 SALHTRLARLSATEPELGDYRELVLDCRFAPKLVPRGSPEGGQPYPVLQ 281
Score = 26.2 bits (56), Expect = 5.2
Identities = 5/27 (18%), Positives = 7/27 (25%), Gaps = 3/27 (11%)
Query: 112 RKDCVNLQD-PYCAWDLKLRKCVPYQE 137
C+ C W C +E
Sbjct: 492 CGRCLRAWHFMGCGWCGN--MCGQQKE 516
>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor,
leucine rich repeat, receptor ectodomain, signaling
protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B
1shy_B 1ssl_A
Length = 727
Score = 39.6 bits (91), Expect = 1e-04
Identities = 7/55 (12%), Positives = 19/55 (34%), Gaps = 14/55 (25%)
Query: 44 NAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSV------PGDYPFYFDEIR 92
++R+ R C + G ++++ L C + F+ ++
Sbjct: 251 QTFHTRIIRFCSINSG--------LHSYMEMPLECILTEKRKKRSTKKEVFNILQ 297
>3nvn_B Plexin-C1; beta-propeller, signaling, viral protein-signaling
protein C; HET: NDG NAG; 2.26A {Homo sapiens} PDB:
3nvq_B*
Length = 476
Score = 39.6 bits (91), Expect = 1e-04
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 113 KDCVNLQDPYCAWDLKLRKCVPYQERT 139
+C+ DP+C W L++C +
Sbjct: 428 SECLTATDPHCGWCHSLQRCTFQGDCV 454
Score = 38.0 bits (87), Expect = 5e-04
Identities = 5/45 (11%), Positives = 12/45 (26%), Gaps = 9/45 (20%)
Query: 44 NAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDYPFYF 88
+ +AR+ +S ++ L+C
Sbjct: 224 ATGWPSMARIAQST---------EVLFQGQASLDCGHGHPDGRRL 259
Score = 33.8 bits (76), Expect = 0.015
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 95 EDCVNLQDPYCAWDLKLRKDCVNLQDPYCAWDLKLRKCVPYQERT 139
+C+ DP+C W L++ C D C L +
Sbjct: 428 SECLTATDPHCGWCHSLQR-CTFQGD--CVHSENLENWLDISSGA 469
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling
protein; HET: NAG BMA; 2.99A {Homo sapiens}
Length = 528
Score = 39.3 bits (90), Expect = 2e-04
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 113 KDCVNLQDPYCAWDLKLRKCVPYQE 137
C+ +DPYC W + L +C E
Sbjct: 473 ASCLAHRDPYCGWCVLLGRCSRRSE 497
Score = 37.8 bits (86), Expect = 7e-04
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 8/53 (15%)
Query: 44 NAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDYPFYFDEIRLPED 96
A + V+RVC D+ + ++++ L C + +
Sbjct: 226 RAFRAYVSRVCLRDQ--------HYYSYVELPLACEGGRYGLIQAAAVATSRE 270
Score = 32.8 bits (73), Expect = 0.030
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 95 EDCVNLQDPYCAWDLKLRKDCVNLQD 120
C+ +DPYC W + L + C +
Sbjct: 473 ASCLAHRDPYCGWCVLLGR-CSRRSE 497
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein;
HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Length = 539
Score = 37.3 bits (85), Expect = 0.001
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 9/71 (12%)
Query: 25 FQSTSIDGVDHVWTQLTKKNAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPG-D 83
F + + D + SR+ R+CK D ++ +++ C+ G +
Sbjct: 225 FLTVQPETPDGMAINSAGDLFYTSRIVRLCKDDP--------KFHSYVSLPFGCTRAGVE 276
Query: 84 YPFYFDEIRLP 94
Y
Sbjct: 277 YRLLQAAYLAK 287
Score = 36.2 bits (82), Expect = 0.002
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 113 KDCVNLQDPYCAWDLKLRKCVPYQE 137
+C++ DP+C W C +
Sbjct: 488 GECLSSGDPHCGWCALHNMCSRRDK 512
Score = 32.3 bits (72), Expect = 0.054
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 95 EDCVNLQDPYCAWDLKLRKDCVNLQDPYCAWDLK-----LRKCVPYQE 137
+C++ DP+C W C AW+ + +C+ +E
Sbjct: 488 GECLSSGDPHCGWCALHNM-CSRRDKCQRAWEANRFAASISQCMSSRE 534
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL
signalling, SI protein; HET: NAG; 2.19A {Mus musculus}
PDB: 3okt_A*
Length = 681
Score = 35.8 bits (81), Expect = 0.003
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 9/75 (12%)
Query: 21 GSVRFQSTSIDGVDHVWTQLTKKNAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSV 80
G V F + + D + SR+ R+CK D ++ +++ C+
Sbjct: 220 GFVYFLTVQPETPDGMAINSAGDLFYTSRIVRLCKDDP--------KFHSYVSLPFGCTR 271
Query: 81 PG-DYPFYFDEIRLP 94
G +Y
Sbjct: 272 AGVEYRLLQAAYLAK 286
Score = 31.2 bits (69), Expect = 0.12
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 112 RKDCVNLQDPYCAWDLKLRKCVPYQER 138
+C++ DP+C W C +
Sbjct: 486 CGECLSSGDPHCGWCALHNMCSRRDKC 512
Score = 28.1 bits (61), Expect = 1.3
Identities = 7/48 (14%), Positives = 16/48 (33%), Gaps = 8/48 (16%)
Query: 95 EDCVNLQDPYCAWDLKLRKDCV------NLQDPYCAWDLKLRKCVPYQ 136
+C++ DP+C W + A + +C+ +
Sbjct: 487 GECLSSGDPHCGWCALHNMCSRRDKCQRAWEANRFAASIS--QCMSLE 532
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.037
Identities = 21/137 (15%), Positives = 38/137 (27%), Gaps = 42/137 (30%)
Query: 5 HTWSTPSLDEVNLCCR-----------GSVRFQSTSIDGVDHVWTQLTKKNA--VYSRVA 51
+ + + + NL C+ + +T+ +DH LT + +
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 52 RVCKSD------KGGP----------HHFGDRW-----------TTFLKSRLNCSVPGDY 84
D P W TT ++S LN P +Y
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 85 PFYFDEIR-LPEDCVNL 100
FD + P ++
Sbjct: 372 RKMFDRLSVFPPS-AHI 387
>1gkm_A Histidase, HAL, histidine ammonia-lyase; histidine degradation;
HET: MDO; 1.0A {Pseudomonas putida} SCOP: a.127.1.2 PDB:
1b8f_A* 1gkj_A* 1eb4_A* 1gk3_A 1gk2_A
Length = 507
Score = 28.3 bits (64), Expect = 1.1
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 6/23 (26%)
Query: 112 RKDCVNLQDPYCAWDLKLRKCVP 134
K+ +QDPY LR C P
Sbjct: 268 HKNADKVQDPYS-----LR-CQP 284
>2qve_A Tyrosine aminomutase; MIO, enediyne, transferase; HET: MDO 247;
2.00A {Streptomyces globisporus} PDB: 2rjr_A* 2rjs_A*
2ohy_A* 3kdz_A* 3kdy_A*
Length = 526
Score = 27.6 bits (62), Expect = 1.6
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 6/40 (15%)
Query: 95 EDCVNLQDPYCAWDLKLRKDCVNLQDPYCAWDLKLRKCVP 134
D +++ + LQ Y LR +P
Sbjct: 268 ADLRRELQKDKEAGKDVQRSEIYLQKAYS-----LR-AIP 301
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 2.0
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 22/96 (22%)
Query: 25 FQSTSIDGVD-H--VWTQLTKKNAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVP 81
F++ ++G D H L + + + + K+ + S L +V
Sbjct: 91 FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG 150
Query: 82 -------------GDYPFYFDEIRLPEDCVNLQDPY 104
G+ YF+E+R +L Y
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEELR------DLYQTY 180
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.481
Gapped
Lambda K H
0.267 0.0413 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,389,064
Number of extensions: 127667
Number of successful extensions: 276
Number of sequences better than 10.0: 1
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 38
Length of query: 148
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 63
Effective length of database: 4,328,508
Effective search space: 272696004
Effective search space used: 272696004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)