RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6150
         (148 letters)



>d1q47a_ b.69.12.1 (A:) Semaphorin 3a {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 495

 Score = 68.6 bits (167), Expect = 5e-15
 Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 2/51 (3%)

Query: 44  NAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGD--YPFYFDEIR 92
            A ++R+ ++CK+D GG     ++WTTFLK+RL CSVPG      +FDE++
Sbjct: 234 KATHARIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTHFDELQ 284


>d1olza2 b.69.12.1 (A:3-480) Semaphorin 4d {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 478

 Score = 66.3 bits (161), Expect = 3e-14
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 45  AVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDYPFYFDEIR 92
            +  R+ARVCK D+GG      +WT+FLK+RL CS P      F+ +R
Sbjct: 225 VLIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRPDS-GLVFNVLR 271


>d1shyb1 b.69.12.1 (B:40-515) Hepatocyte growth factor receptor
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 476

 Score = 48.2 bits (114), Expect = 6e-08
 Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 14/55 (25%)

Query: 44  NAVYSRVARVCKSDKGGPHHFGDRWTTFLKSRLNCSVPGDYP------FYFDEIR 92
              ++R+ R C  + G          ++++  L C +    P        F+ ++
Sbjct: 233 QTFHTRIIRFCSINSG--------LHSYMEMPLECILTELVPRGSTKKEVFNILQ 279


>d1olza3 g.16.2.1 (A:481-536) Semaphorin 4d {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 56

 Score = 34.2 bits (78), Expect = 5e-04
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 113 KDCVNLQDPYCAWDLKLRKCVPYQE 137
           +DCV  +DPYCAW      CV   +
Sbjct: 9   EDCVLARDPYCAWSPPTATCVALHQ 33



 Score = 30.4 bits (68), Expect = 0.014
 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 1/27 (3%)

Query: 95  EDCVNLQDPYCAWDLKLRKDCVNLQDP 121
           EDCV  +DPYCAW       CV L   
Sbjct: 9   EDCVLARDPYCAWSPPTAT-CVALHQT 34


>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 162

 Score = 23.6 bits (51), Expect = 9.7
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 55 KSDKGGPHHFGDRWTTF----LKSRLNCSVPGDYPFYFDEIRLPE 95
          +S+K G   FG  W        +  +   +P  YP    EI +PE
Sbjct: 55 ESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPE 99


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.481 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 620,953
Number of extensions: 27956
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 7
Length of query: 148
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,350,386
Effective search space: 95877406
Effective search space used: 95877406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (22.8 bits)