Query psy6156
Match_columns 176
No_of_seqs 131 out of 148
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 19:04:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6156.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6156hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2956|consensus 100.0 4E-38 8.8E-43 281.8 12.6 150 9-158 360-515 (516)
2 KOG1242|consensus 99.5 1.2E-13 2.6E-18 127.6 9.4 125 8-134 205-338 (569)
3 PF12348 CLASP_N: CLASP N term 99.4 5.6E-12 1.2E-16 102.9 11.0 140 2-143 77-228 (228)
4 PF10274 ParcG: Parkin co-regu 98.6 1.2E-07 2.5E-12 77.3 6.5 100 45-149 34-136 (183)
5 KOG1820|consensus 98.3 2.2E-06 4.7E-11 83.2 9.4 145 3-148 320-471 (815)
6 KOG2956|consensus 98.0 4.9E-06 1.1E-10 76.0 4.4 81 1-85 429-511 (516)
7 PF02985 HEAT: HEAT repeat; I 97.9 1.6E-05 3.5E-10 46.3 3.8 30 92-121 1-30 (31)
8 PF13513 HEAT_EZ: HEAT-like re 97.8 2.8E-05 6.1E-10 50.3 4.0 53 63-116 1-53 (55)
9 PF12755 Vac14_Fab1_bd: Vacuol 97.5 0.00025 5.4E-09 52.1 5.4 71 67-139 4-74 (97)
10 PF12755 Vac14_Fab1_bd: Vacuol 97.5 0.00064 1.4E-08 49.9 7.3 74 8-112 16-89 (97)
11 cd00020 ARM Armadillo/beta-cat 97.4 0.0009 1.9E-08 47.7 7.2 98 21-119 8-119 (120)
12 KOG0915|consensus 97.3 0.00096 2.1E-08 68.1 9.1 120 5-125 984-1118(1702)
13 PF13646 HEAT_2: HEAT repeats; 97.3 0.0018 3.8E-08 44.7 7.8 83 22-115 1-87 (88)
14 COG5096 Vesicle coat complex, 97.2 0.0033 7.2E-08 60.9 11.0 95 18-119 53-155 (757)
15 KOG1242|consensus 97.2 0.0023 5.1E-08 60.0 9.2 109 17-126 330-450 (569)
16 KOG2933|consensus 97.0 0.002 4.3E-08 56.7 6.2 79 46-125 85-163 (334)
17 KOG1824|consensus 96.9 0.0027 5.9E-08 62.6 7.7 125 12-137 365-524 (1233)
18 PF12348 CLASP_N: CLASP N term 96.9 0.001 2.2E-08 54.0 3.8 75 58-133 16-94 (228)
19 PF10363 DUF2435: Protein of u 96.7 0.011 2.3E-07 43.1 7.7 86 52-150 6-91 (92)
20 KOG2171|consensus 96.7 0.01 2.2E-07 59.2 9.3 130 5-136 375-519 (1075)
21 cd00020 ARM Armadillo/beta-cat 96.6 0.0075 1.6E-07 42.9 6.1 70 50-120 8-78 (120)
22 PF01602 Adaptin_N: Adaptin N 96.6 0.0085 1.8E-07 54.1 7.8 98 21-125 43-148 (526)
23 KOG2171|consensus 96.6 0.0055 1.2E-07 61.1 6.9 93 41-139 336-432 (1075)
24 PF12460 MMS19_C: RNAPII trans 96.6 0.0053 1.1E-07 55.2 6.3 105 31-136 299-409 (415)
25 PTZ00429 beta-adaptin; Provisi 96.4 0.012 2.6E-07 57.2 8.0 96 22-124 70-173 (746)
26 PF12765 Cohesin_HEAT: HEAT re 96.4 0.005 1.1E-07 38.5 3.4 39 72-113 2-40 (42)
27 KOG1248|consensus 96.0 0.06 1.3E-06 54.2 10.8 96 48-146 826-922 (1176)
28 PRK09687 putative lyase; Provi 95.8 0.035 7.5E-07 47.8 7.3 43 90-136 191-234 (280)
29 PF08623 TIP120: TATA-binding 95.7 0.21 4.6E-06 40.3 11.0 114 14-129 3-156 (169)
30 PF08064 UME: UME (NUC010) dom 95.7 0.026 5.6E-07 41.9 5.3 71 62-135 28-98 (107)
31 KOG1967|consensus 95.6 0.026 5.6E-07 55.7 6.3 119 1-119 890-1023(1030)
32 PRK13800 putative oxidoreducta 95.6 0.078 1.7E-06 52.3 9.5 98 21-118 622-741 (897)
33 PF12719 Cnd3: Nuclear condens 95.6 0.21 4.6E-06 42.8 11.2 116 3-119 8-142 (298)
34 KOG0915|consensus 95.3 0.07 1.5E-06 55.1 8.2 129 11-140 1030-1179(1702)
35 KOG2023|consensus 95.1 0.046 9.9E-07 52.7 6.0 100 17-116 87-199 (885)
36 PRK13800 putative oxidoreducta 95.1 0.083 1.8E-06 52.1 7.9 83 22-115 777-862 (897)
37 PF04118 Dopey_N: Dopey, N-ter 95.0 0.29 6.2E-06 43.0 10.3 150 4-154 37-204 (307)
38 PF13646 HEAT_2: HEAT repeats; 94.9 0.074 1.6E-06 36.4 5.2 66 51-131 1-67 (88)
39 PF12717 Cnd1: non-SMC mitotic 94.8 0.067 1.5E-06 42.6 5.4 78 50-131 26-103 (178)
40 KOG1243|consensus 94.6 0.47 1E-05 45.8 11.2 73 50-125 331-403 (690)
41 PRK09687 putative lyase; Provi 94.3 0.29 6.2E-06 42.1 8.5 26 90-115 127-152 (280)
42 KOG0212|consensus 93.8 0.67 1.5E-05 44.1 10.4 117 7-124 112-241 (675)
43 PF12717 Cnd1: non-SMC mitotic 93.8 0.73 1.6E-05 36.6 9.4 126 16-154 21-160 (178)
44 KOG2023|consensus 93.8 0.31 6.6E-06 47.2 8.2 126 19-153 127-269 (885)
45 PF01602 Adaptin_N: Adaptin N 93.6 0.95 2.1E-05 40.8 10.9 98 17-118 76-179 (526)
46 KOG0212|consensus 93.5 0.36 7.8E-06 45.9 8.0 111 10-121 281-407 (675)
47 KOG0213|consensus 93.0 0.83 1.8E-05 45.0 9.7 138 3-143 657-809 (1172)
48 KOG0166|consensus 92.9 0.48 1E-05 44.4 8.0 112 11-125 228-354 (514)
49 PF11698 V-ATPase_H_C: V-ATPas 92.9 0.46 9.9E-06 36.3 6.5 69 48-118 42-113 (119)
50 TIGR02270 conserved hypothetic 92.8 0.77 1.7E-05 41.8 9.0 95 22-116 88-203 (410)
51 PF10508 Proteasom_PSMB: Prote 92.8 2 4.4E-05 39.7 12.0 127 25-153 43-192 (503)
52 smart00802 UME Domain in UVSB 92.6 0.32 7E-06 36.3 5.3 67 64-133 30-96 (107)
53 PF03224 V-ATPase_H_N: V-ATPas 92.3 0.8 1.7E-05 39.5 8.1 93 49-145 105-200 (312)
54 KOG1943|consensus 92.0 0.56 1.2E-05 47.3 7.4 132 14-149 335-484 (1133)
55 PF04388 Hamartin: Hamartin pr 91.8 1.9 4.2E-05 41.6 10.8 115 21-149 40-161 (668)
56 KOG1967|consensus 91.8 0.9 2E-05 45.3 8.6 116 15-131 862-993 (1030)
57 TIGR02270 conserved hypothetic 91.0 1.4 3E-05 40.1 8.5 57 21-77 118-175 (410)
58 KOG1058|consensus 90.9 0.12 2.6E-06 50.4 1.6 44 87-132 130-173 (948)
59 KOG0392|consensus 90.3 0.93 2E-05 46.7 7.2 122 14-137 811-942 (1549)
60 KOG1061|consensus 89.9 0.88 1.9E-05 44.2 6.5 96 18-120 47-150 (734)
61 PF00514 Arm: Armadillo/beta-c 89.6 0.89 1.9E-05 27.3 4.3 29 91-119 12-40 (41)
62 PLN03200 cellulose synthase-in 89.0 1.6 3.5E-05 47.1 8.1 137 19-157 650-820 (2102)
63 KOG3961|consensus 88.6 1.3 2.9E-05 37.6 5.9 90 45-136 105-202 (262)
64 PF02985 HEAT: HEAT repeat; I 88.5 0.6 1.3E-05 26.7 2.8 23 21-43 1-23 (31)
65 KOG2149|consensus 88.1 2.5 5.5E-05 38.4 7.8 96 50-154 59-154 (393)
66 PF08167 RIX1: rRNA processing 88.0 11 0.00025 29.6 11.0 84 50-136 68-158 (165)
67 PF13513 HEAT_EZ: HEAT-like re 87.9 0.78 1.7E-05 29.1 3.3 32 12-43 20-51 (55)
68 PF10508 Proteasom_PSMB: Prote 87.8 6.1 0.00013 36.6 10.4 100 18-119 75-188 (503)
69 PF12719 Cnd3: Nuclear condens 87.6 6 0.00013 33.9 9.6 99 49-152 26-126 (298)
70 PTZ00429 beta-adaptin; Provisi 86.9 4.1 8.8E-05 40.0 9.0 108 10-118 130-283 (746)
71 PF08167 RIX1: rRNA processing 86.8 5.6 0.00012 31.3 8.3 95 47-141 23-124 (165)
72 PF05004 IFRD: Interferon-rela 86.7 16 0.00034 31.9 11.9 110 16-125 39-165 (309)
73 KOG2933|consensus 86.5 2.5 5.3E-05 37.6 6.6 109 14-122 164-279 (334)
74 KOG1058|consensus 86.2 6.6 0.00014 38.9 9.8 132 15-146 129-319 (948)
75 PF05004 IFRD: Interferon-rela 86.2 11 0.00023 32.9 10.5 113 12-124 121-261 (309)
76 KOG1248|consensus 85.1 7.5 0.00016 39.8 9.9 138 4-142 723-878 (1176)
77 cd08050 TAF6 TATA Binding Prot 84.6 11 0.00024 33.4 9.9 101 24-125 182-302 (343)
78 COG1413 FOG: HEAT repeat [Ener 84.5 6.9 0.00015 33.4 8.5 102 20-136 43-148 (335)
79 KOG2032|consensus 84.3 19 0.00041 34.0 11.5 121 4-124 240-375 (533)
80 PF12830 Nipped-B_C: Sister ch 84.2 3.1 6.6E-05 33.5 5.8 78 21-102 9-94 (187)
81 PF08389 Xpo1: Exportin 1-like 83.2 3.3 7.2E-05 30.6 5.3 65 47-115 80-148 (148)
82 KOG0166|consensus 82.9 3.5 7.5E-05 38.8 6.3 105 14-119 272-392 (514)
83 PF12231 Rif1_N: Rap1-interact 82.6 13 0.00028 33.1 9.6 83 68-152 153-240 (372)
84 PF12074 DUF3554: Domain of un 82.4 4.8 0.0001 35.0 6.7 85 48-136 21-106 (339)
85 COG1413 FOG: HEAT repeat [Ener 81.9 13 0.00029 31.7 9.2 61 19-79 73-136 (335)
86 PF10521 DUF2454: Protein of u 81.8 9.5 0.00021 32.6 8.2 126 8-134 107-266 (282)
87 PF11865 DUF3385: Domain of un 81.6 11 0.00024 29.7 7.9 71 50-121 87-158 (160)
88 PF10521 DUF2454: Protein of u 81.6 2.7 5.7E-05 36.0 4.7 65 62-126 88-154 (282)
89 KOG1241|consensus 81.5 4.8 0.0001 39.6 6.8 128 2-132 579-722 (859)
90 KOG1824|consensus 81.3 6.8 0.00015 39.7 7.8 119 3-125 915-1038(1233)
91 KOG0213|consensus 80.2 8.1 0.00018 38.5 7.8 94 31-125 487-587 (1172)
92 KOG1241|consensus 79.7 8.1 0.00018 38.1 7.7 76 50-125 365-440 (859)
93 KOG2759|consensus 78.7 5.4 0.00012 36.7 5.9 70 48-118 365-436 (442)
94 PF10193 Telomere_reg-2: Telom 77.1 11 0.00024 28.2 6.3 74 62-139 18-103 (114)
95 PF12460 MMS19_C: RNAPII trans 77.0 5.4 0.00012 35.8 5.4 48 50-98 366-413 (415)
96 COG5215 KAP95 Karyopherin (imp 76.8 21 0.00046 34.7 9.3 128 2-132 580-722 (858)
97 KOG1062|consensus 75.9 4.8 0.0001 39.8 5.0 39 87-125 138-176 (866)
98 PF05536 Neurochondrin: Neuroc 75.5 23 0.0005 33.4 9.3 106 65-173 375-489 (543)
99 KOG4653|consensus 75.3 32 0.00069 34.6 10.4 58 88-146 885-943 (982)
100 PF05918 API5: Apoptosis inhib 75.2 13 0.00029 35.3 7.6 64 14-77 53-124 (556)
101 KOG1240|consensus 75.0 7.8 0.00017 40.1 6.3 59 63-124 437-495 (1431)
102 KOG2259|consensus 74.0 5.4 0.00012 38.9 4.7 81 25-111 378-466 (823)
103 PF12074 DUF3554: Domain of un 73.8 28 0.00062 30.1 9.0 61 65-125 178-240 (339)
104 KOG2025|consensus 73.2 17 0.00036 35.9 7.8 134 3-138 110-277 (892)
105 KOG1020|consensus 72.5 11 0.00024 39.8 6.7 106 14-124 810-925 (1692)
106 COG5215 KAP95 Karyopherin (imp 72.5 19 0.00042 34.9 7.9 80 50-130 367-446 (858)
107 KOG0211|consensus 72.4 28 0.00061 34.4 9.3 97 27-125 244-350 (759)
108 PF08767 CRM1_C: CRM1 C termin 71.3 37 0.00081 29.6 9.1 109 15-124 66-198 (319)
109 PLN03076 ARF guanine nucleotid 70.9 39 0.00084 36.6 10.5 109 16-125 1343-1494(1780)
110 KOG2149|consensus 70.8 18 0.0004 33.0 7.2 67 49-115 99-165 (393)
111 PF06371 Drf_GBD: Diaphanous G 70.7 14 0.00031 28.6 5.9 54 64-119 131-186 (187)
112 KOG2025|consensus 70.7 30 0.00064 34.3 8.8 118 2-120 26-155 (892)
113 smart00185 ARM Armadillo/beta- 70.4 9.3 0.0002 21.9 3.7 28 91-118 12-39 (41)
114 KOG1020|consensus 69.0 45 0.00098 35.5 10.1 107 12-121 847-961 (1692)
115 PF13251 DUF4042: Domain of un 68.8 20 0.00044 29.1 6.4 69 53-121 105-175 (182)
116 cd00256 VATPase_H VATPase_H, r 68.2 15 0.00033 33.8 6.2 69 49-118 353-423 (429)
117 KOG2274|consensus 68.1 32 0.0007 34.7 8.6 98 21-121 5-120 (1005)
118 PF11701 UNC45-central: Myosin 68.0 35 0.00076 26.6 7.5 69 50-119 44-116 (157)
119 PF10363 DUF2435: Protein of u 67.1 44 0.00096 24.0 7.4 51 46-104 40-90 (92)
120 PF10274 ParcG: Parkin co-regu 66.7 22 0.00047 29.1 6.2 82 16-97 34-130 (183)
121 PLN03200 cellulose synthase-in 66.7 38 0.00083 37.2 9.5 101 20-120 530-638 (2102)
122 PF12765 Cohesin_HEAT: HEAT re 66.6 11 0.00025 23.2 3.6 24 18-41 16-39 (42)
123 COG5095 TAF6 Transcription ini 64.7 88 0.0019 28.3 10.0 130 14-153 195-345 (450)
124 PF12333 Ipi1_N: Rix1 complex 64.0 26 0.00055 25.5 5.7 62 81-149 1-62 (102)
125 PF04118 Dopey_N: Dopey, N-ter 63.9 6.7 0.00015 34.5 2.9 65 67-132 73-137 (307)
126 cd03562 CID CID (CTD-Interacti 63.8 53 0.0012 23.7 8.4 80 32-111 17-99 (114)
127 smart00582 RPR domain present 63.2 42 0.00091 24.4 6.8 89 24-112 4-99 (121)
128 PF12231 Rif1_N: Rap1-interact 62.9 98 0.0021 27.5 10.2 55 86-146 269-323 (372)
129 KOG1240|consensus 62.6 20 0.00042 37.4 6.1 64 50-116 618-681 (1431)
130 COG5218 YCG1 Chromosome conden 62.5 79 0.0017 31.0 9.8 120 4-125 33-166 (885)
131 KOG2137|consensus 61.5 59 0.0013 31.9 9.0 120 15-138 384-526 (700)
132 COG5181 HSH155 U2 snRNP splice 60.9 80 0.0017 31.2 9.6 122 14-144 835-973 (975)
133 KOG4413|consensus 60.1 37 0.0008 31.1 6.9 78 41-118 70-155 (524)
134 KOG1060|consensus 59.9 26 0.00057 35.0 6.3 74 52-137 38-111 (968)
135 KOG0803|consensus 59.8 23 0.0005 37.0 6.3 87 49-136 41-127 (1312)
136 PF14676 FANCI_S2: FANCI solen 57.7 94 0.002 24.6 9.6 31 86-116 127-157 (158)
137 PF13251 DUF4042: Domain of un 56.8 17 0.00038 29.5 4.0 56 65-120 2-69 (182)
138 KOG1820|consensus 56.1 24 0.00051 35.2 5.5 92 41-133 241-336 (815)
139 cd03561 VHS VHS domain family; 55.7 86 0.0019 23.6 11.8 81 45-125 33-117 (133)
140 KOG1059|consensus 55.1 9.9 0.00022 37.4 2.6 47 87-134 140-186 (877)
141 KOG2137|consensus 55.1 1.2E+02 0.0025 29.9 9.8 137 16-155 345-501 (700)
142 cd00256 VATPase_H VATPase_H, r 54.9 1.3E+02 0.0028 27.8 9.8 67 52-118 104-171 (429)
143 PF13001 Ecm29: Proteasome sta 54.8 41 0.0009 31.2 6.6 92 9-100 12-115 (501)
144 KOG1060|consensus 54.8 87 0.0019 31.5 8.9 86 65-170 124-209 (968)
145 cd00197 VHS_ENTH_ANTH VHS, ENT 54.7 63 0.0014 23.4 6.5 70 46-115 34-110 (115)
146 cd03569 VHS_Hrs_Vps27p VHS dom 54.4 98 0.0021 23.8 9.3 81 45-125 37-119 (142)
147 KOG1837|consensus 53.8 1.1E+02 0.0024 32.8 9.9 66 64-131 1556-1621(1621)
148 PF08064 UME: UME (NUC010) dom 52.9 88 0.0019 22.8 7.1 37 65-101 70-106 (107)
149 COG5181 HSH155 U2 snRNP splice 51.0 51 0.0011 32.5 6.6 92 32-124 293-391 (975)
150 PF12830 Nipped-B_C: Sister ch 50.5 1.2E+02 0.0026 24.2 7.9 66 55-125 14-79 (187)
151 cd00864 PI3Ka Phosphoinositide 49.9 77 0.0017 24.8 6.6 72 19-96 38-114 (152)
152 KOG0211|consensus 48.4 1.5E+02 0.0032 29.5 9.5 114 9-125 468-591 (759)
153 KOG1059|consensus 48.1 29 0.00062 34.4 4.5 94 18-118 179-284 (877)
154 KOG3818|consensus 47.9 44 0.00096 31.3 5.5 70 68-138 26-95 (525)
155 PF04826 Arm_2: Armadillo-like 47.8 1.4E+02 0.003 25.4 8.3 70 64-136 110-186 (254)
156 KOG2032|consensus 47.7 1.3E+02 0.0028 28.6 8.5 72 63-135 272-344 (533)
157 COG5240 SEC21 Vesicle coat com 47.6 1.4E+02 0.003 29.3 8.9 53 91-147 526-583 (898)
158 PF11707 Npa1: Ribosome 60S bi 47.4 1.7E+02 0.0037 25.5 9.0 72 51-122 58-145 (330)
159 KOG3613|consensus 46.8 76 0.0016 34.3 7.5 110 63-172 1501-1616(1749)
160 PF03378 CAS_CSE1: CAS/CSE pro 46.6 1.3E+02 0.0029 27.5 8.5 53 67-119 218-273 (435)
161 KOG1077|consensus 46.4 1.8E+02 0.004 29.1 9.6 86 50-139 330-421 (938)
162 PF14500 MMS19_N: Dos2-interac 46.3 14 0.00031 31.4 2.1 46 89-134 206-251 (262)
163 cd07920 Pumilio Pumilio-family 45.5 53 0.0012 27.7 5.5 96 3-102 26-126 (322)
164 PF14726 RTTN_N: Rotatin, an a 43.3 83 0.0018 23.1 5.4 63 18-89 8-70 (98)
165 smart00145 PI3Ka Phosphoinosit 43.1 59 0.0013 26.3 5.1 72 19-96 43-119 (184)
166 PF08623 TIP120: TATA-binding 42.7 74 0.0016 25.6 5.5 79 60-143 38-116 (169)
167 cd00872 PI3Ka_I Phosphoinositi 42.3 97 0.0021 24.9 6.2 73 19-97 38-115 (171)
168 PF05918 API5: Apoptosis inhib 42.1 1.4E+02 0.003 28.6 8.0 94 21-119 24-124 (556)
169 COG5116 RPN2 26S proteasome re 40.8 70 0.0015 31.3 5.8 56 65-125 20-75 (926)
170 KOG2973|consensus 40.7 58 0.0013 29.2 4.9 25 95-119 7-31 (353)
171 KOG1243|consensus 40.3 60 0.0013 31.8 5.3 127 17-152 366-520 (690)
172 PF08158 NUC130_3NT: NUC130/3N 39.8 52 0.0011 21.4 3.5 41 80-120 8-48 (52)
173 PF13001 Ecm29: Proteasome sta 39.7 81 0.0018 29.3 6.1 53 72-124 4-56 (501)
174 KOG0392|consensus 39.6 1.2E+02 0.0026 32.1 7.5 73 58-134 825-897 (1549)
175 PF07539 DRIM: Down-regulated 38.7 40 0.00087 26.2 3.3 36 92-131 18-53 (141)
176 cd03572 ENTH_epsin_related ENT 38.4 1.8E+02 0.0039 22.2 7.5 69 50-119 39-118 (122)
177 KOG1061|consensus 38.3 1.1E+02 0.0024 30.2 6.8 97 6-102 107-213 (734)
178 KOG2062|consensus 38.2 94 0.002 31.1 6.3 65 55-124 10-74 (929)
179 COG5096 Vesicle coat complex, 38.2 4.2E+02 0.0091 26.5 11.9 144 19-170 91-252 (757)
180 KOG0889|consensus 37.8 2.2E+02 0.0047 33.3 9.5 90 12-103 42-150 (3550)
181 PF08161 NUC173: NUC173 domain 37.2 51 0.0011 27.0 3.9 64 68-132 19-82 (198)
182 smart00802 UME Domain in UVSB 37.2 1.6E+02 0.0034 21.8 6.2 37 65-101 70-106 (107)
183 PF14500 MMS19_N: Dos2-interac 36.7 90 0.0019 26.6 5.5 49 49-97 208-256 (262)
184 PF11864 DUF3384: Domain of un 36.4 1.9E+02 0.004 26.5 7.8 61 65-125 272-336 (464)
185 PF14663 RasGEF_N_2: Rapamycin 36.3 61 0.0013 24.1 3.9 32 89-120 6-37 (115)
186 cd00870 PI3Ka_III Phosphoinosi 36.1 93 0.002 24.8 5.1 73 19-97 45-122 (166)
187 PF00790 VHS: VHS domain; Int 35.9 89 0.0019 23.7 4.9 81 45-125 38-123 (140)
188 cd00870 PI3Ka_III Phosphoinosi 35.9 18 0.00039 28.9 1.0 56 67-136 64-119 (166)
189 PF11919 DUF3437: Domain of un 35.8 78 0.0017 22.8 4.2 59 65-125 5-63 (90)
190 cd03568 VHS_STAM VHS domain fa 35.4 2.1E+02 0.0045 22.1 9.3 81 45-125 33-115 (144)
191 smart00288 VHS Domain present 34.2 2E+02 0.0044 21.6 8.6 79 46-124 34-115 (133)
192 COG5218 YCG1 Chromosome conden 34.0 4.3E+02 0.0093 26.2 9.8 103 20-124 15-124 (885)
193 cd00869 PI3Ka_II Phosphoinosit 34.0 1E+02 0.0023 24.8 5.1 72 19-96 38-114 (169)
194 KOG2259|consensus 33.0 1.5E+02 0.0032 29.4 6.7 102 18-119 196-309 (823)
195 PF08146 BP28CT: BP28CT (NUC21 32.2 48 0.001 25.9 2.9 29 105-133 35-63 (153)
196 KOG1517|consensus 32.1 1.3E+02 0.0028 31.4 6.4 71 51-121 601-672 (1387)
197 PF11701 UNC45-central: Myosin 32.1 1.9E+02 0.0042 22.4 6.3 65 50-116 87-155 (157)
198 PF00613 PI3Ka: Phosphoinositi 32.0 58 0.0013 26.3 3.4 72 19-96 44-120 (184)
199 COG5098 Chromosome condensatio 31.9 3.8E+02 0.0082 27.1 9.2 101 44-153 291-399 (1128)
200 KOG4224|consensus 30.6 1.3E+02 0.0029 27.9 5.7 62 50-111 209-271 (550)
201 cd06561 AlkD_like A new struct 30.3 81 0.0018 24.5 3.9 74 52-132 108-181 (197)
202 cd07920 Pumilio Pumilio-family 29.8 1.3E+02 0.0028 25.3 5.3 34 69-102 165-198 (322)
203 KOG1949|consensus 29.6 1.1E+02 0.0025 30.5 5.3 32 88-119 299-330 (1005)
204 PF14842 FliG_N: FliG N-termin 29.1 38 0.00082 24.8 1.7 41 105-150 6-46 (108)
205 KOG1525|consensus 28.8 4.4E+02 0.0095 27.9 9.6 70 50-120 260-329 (1266)
206 KOG2759|consensus 28.4 4E+02 0.0086 24.9 8.4 109 5-118 73-184 (442)
207 PF11841 DUF3361: Domain of un 28.3 2E+02 0.0043 23.1 5.8 74 49-125 58-136 (160)
208 COG5064 SRP1 Karyopherin (impo 28.0 3.9E+02 0.0085 24.7 8.2 125 13-139 64-213 (526)
209 KOG2062|consensus 27.6 2.4E+02 0.0052 28.4 7.1 120 21-151 555-680 (929)
210 KOG4653|consensus 27.5 6.9E+02 0.015 25.7 12.2 126 3-129 831-973 (982)
211 KOG1062|consensus 27.5 1.4E+02 0.0031 30.0 5.6 66 19-85 141-214 (866)
212 KOG0168|consensus 27.2 83 0.0018 31.9 4.0 73 8-80 543-631 (1051)
213 PF01603 B56: Protein phosphat 26.7 1.7E+02 0.0038 26.4 5.9 49 67-115 273-321 (409)
214 KOG2549|consensus 26.5 5.9E+02 0.013 24.6 11.7 104 21-125 208-332 (576)
215 PF11864 DUF3384: Domain of un 25.9 5.1E+02 0.011 23.6 10.2 120 3-125 159-290 (464)
216 PF04699 P16-Arc: ARP2/3 compl 25.8 95 0.0021 24.6 3.5 53 106-158 70-122 (152)
217 KOG1848|consensus 25.4 9E+02 0.019 26.3 11.2 135 15-155 992-1164(1610)
218 KOG1991|consensus 25.3 2.8E+02 0.0061 28.5 7.3 85 60-151 514-600 (1010)
219 KOG1943|consensus 25.3 3.6E+02 0.0078 28.1 8.1 62 66-131 233-296 (1133)
220 KOG2081|consensus 25.2 4.5E+02 0.0098 25.3 8.3 82 34-122 374-459 (559)
221 KOG2044|consensus 25.0 24 0.00052 35.2 0.0 32 115-147 332-366 (931)
222 KOG1222|consensus 24.7 2.4E+02 0.0052 27.2 6.4 74 44-117 585-660 (791)
223 smart00638 LPD_N Lipoprotein N 24.7 3.8E+02 0.0083 24.8 7.9 66 44-117 472-542 (574)
224 KOG2274|consensus 24.1 1.3E+02 0.0028 30.7 4.7 94 1-97 61-176 (1005)
225 PF08767 CRM1_C: CRM1 C termin 24.0 1.8E+02 0.0039 25.3 5.3 67 66-133 44-113 (319)
226 PF08506 Cse1: Cse1; InterPro 23.6 1.9E+02 0.0042 25.9 5.5 59 52-114 308-369 (370)
227 PF14631 FancD2: Fanconi anaem 23.3 8.3E+02 0.018 26.3 10.6 88 30-119 445-543 (1426)
228 COG5537 IRR1 Cohesin [Cell div 23.2 7.2E+02 0.016 24.6 9.3 92 24-119 279-385 (740)
229 PHA01632 hypothetical protein 22.9 58 0.0013 21.9 1.5 27 5-31 20-46 (64)
230 KOG2022|consensus 22.6 1.7E+02 0.0038 29.7 5.3 81 49-134 508-589 (982)
231 KOG4524|consensus 22.4 1.6E+02 0.0035 30.1 5.0 56 69-125 568-623 (1014)
232 PF05804 KAP: Kinesin-associat 22.2 3.6E+02 0.0079 26.6 7.4 68 50-118 577-647 (708)
233 COG5240 SEC21 Vesicle coat com 21.9 4.5E+02 0.0098 26.0 7.7 100 12-118 56-164 (898)
234 PF14911 MMS22L_C: S-phase gen 21.8 3.5E+02 0.0077 24.5 6.8 89 3-92 236-342 (373)
235 KOG1949|consensus 21.4 4.1E+02 0.0088 26.9 7.4 49 68-119 243-291 (1005)
236 PF08569 Mo25: Mo25-like; Int 21.2 5.1E+02 0.011 23.0 7.6 106 14-120 115-238 (335)
237 KOG4346|consensus 20.8 3.9E+02 0.0085 26.7 7.1 82 2-84 533-624 (849)
238 PF04499 SAPS: SIT4 phosphatas 20.7 6.6E+02 0.014 23.4 8.5 78 31-124 18-96 (475)
239 cd03567 VHS_GGA VHS domain fam 20.6 4E+02 0.0087 20.5 8.4 77 47-123 36-119 (139)
240 PF05536 Neurochondrin: Neuroc 20.4 6E+02 0.013 24.0 8.3 102 13-119 19-127 (543)
241 KOG4346|consensus 20.2 2.3E+02 0.005 28.2 5.5 84 45-131 505-590 (849)
242 PF04510 DUF577: Family of unk 20.2 3.1E+02 0.0068 22.3 5.5 22 12-33 76-97 (174)
243 PF08713 DNA_alkylation: DNA a 20.0 53 0.0012 25.9 1.1 76 50-133 121-196 (213)
No 1
>KOG2956|consensus
Probab=100.00 E-value=4e-38 Score=281.77 Aligned_cols=150 Identities=30% Similarity=0.478 Sum_probs=141.1
Q ss_pred hCCCchhchHhhHHHHHHHHhcChh-HHHHHHH-----HHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCC
Q psy6156 9 NGKGPVELFLPNIMPALLQAYENQD-SCVRKCS-----VFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGK 82 (176)
Q Consensus 9 ~~~~~~e~~l~~iL~~LLd~~~d~e-~~VrkAa-----v~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~ 82 (176)
+|++.+.++.+..+.|+||+.+|.. .++|.|+ .+....|.+|+.++.|+|.+.|+|+++++|||+||+|+++++
T Consensus 360 ~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~ 439 (516)
T KOG2956|consen 360 NQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSA 439 (516)
T ss_pred hchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCH
Confidence 4667799999999999999999975 6777764 555678999999999999999999999999999999999999
Q ss_pred chHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHHhhhcccCCCCCC
Q psy6156 83 GPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSSSVPT 158 (176)
Q Consensus 83 d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi~R~~~~~~~~~~ 158 (176)
|++.+.+++++|++++||++++|.|||+|||||||||.++|+++|+|||++|+++|++|+++||+|++++++|+++
T Consensus 440 EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa~s~~s~a~~ 515 (516)
T KOG2956|consen 440 EELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRASSSSSGASS 515 (516)
T ss_pred HHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHhhcccCCCCC
Confidence 9999999999999999999999999999999999999999988899999999999999999999999999999876
No 2
>KOG1242|consensus
Probab=99.48 E-value=1.2e-13 Score=127.59 Aligned_cols=125 Identities=17% Similarity=0.351 Sum_probs=108.7
Q ss_pred HhCCCchhchHhhHHHHHHHHhcChhHHHHHHH------HHhhcChHH---HHHhhhhhhhccCcchHHHHHHHHHHHHh
Q psy6156 8 QNGKGPVELFLPNIMPALLQAYENQDSCVRKCS------VFCMVALYK---VTRILFPLIIAEEHPINLVAIKMLTKVIE 78 (176)
Q Consensus 8 ~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~p~~---~l~vL~p~l~~~~~~~~~~aLkmLtklv~ 78 (176)
+.| .++|||+-+++|.+++++.|+...||+|+ +...++++. .+.-+.+-+.+.+|+++.+++..+.-+.
T Consensus 205 ~Lg-~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~- 282 (569)
T KOG1242|consen 205 NLG-PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMA- 282 (569)
T ss_pred hcC-CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHH-
Confidence 345 66999999999999999999999999986 444577775 4444444445669999999999999777
Q ss_pred hcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccC
Q psy6156 79 QNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKL 134 (176)
Q Consensus 79 ~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L 134 (176)
...++++...+|+++|.+.+.++|++++||||+..||+.++.++.|+++.||++.|
T Consensus 283 ~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~L 338 (569)
T KOG1242|consen 283 DCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTL 338 (569)
T ss_pred HhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999743
No 3
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.37 E-value=5.6e-12 Score=102.87 Aligned_cols=140 Identities=21% Similarity=0.346 Sum_probs=96.3
Q ss_pred hhHHHHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHH------HHhhcC-hHHH-HHhhhhhhhccCcchHHHHHHHH
Q psy6156 2 LTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS------VFCMVA-LYKV-TRILFPLIIAEEHPINLVAIKML 73 (176)
Q Consensus 2 ~t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~-p~~~-l~vL~p~l~~~~~~~~~~aLkmL 73 (176)
+..+..+.+++ ++++++.++|.|++..+|....+++++ ++..++ +..+ +..+.+..++..++....++..+
T Consensus 77 l~~l~~~l~~~-~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l 155 (228)
T PF12348_consen 77 LSDLARQLGSH-FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWL 155 (228)
T ss_dssp HHHHHHHHGGG-GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHHHHHhHh-HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 45667777766 999999999999999999999999986 444566 3455 88999999999999999999999
Q ss_pred HHHHhhcC--CchHHh--hhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHH
Q psy6156 74 TKVIEQNG--KGPVEL--FLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQ 143 (176)
Q Consensus 74 tklv~~~~--~d~l~~--~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~ 143 (176)
..+++..+ .+.+.. .++.+.|.+.++..|++++||++|-.|+..+|..+|+. -.-.+..|+++.||.++
T Consensus 156 ~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~-a~~~~~~l~~~~qk~le 228 (228)
T PF12348_consen 156 AIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER-AESILSMLDPNIQKYLE 228 (228)
T ss_dssp HHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH-H----------------
T ss_pred HHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh-hccchhcchhcccccCC
Confidence 99999999 455544 36999999999999999999999999999999999998 66777999999999864
No 4
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=98.59 E-value=1.2e-07 Score=77.31 Aligned_cols=100 Identities=24% Similarity=0.406 Sum_probs=89.7
Q ss_pred cChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHH---HHH
Q psy6156 45 VALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVAL---YKE 121 (176)
Q Consensus 45 v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal---~~~ 121 (176)
++-+-.+.++...+...+.|-...|.+..+.++++.+.+-+.+.+|++++.+.+|++..+++|.+++.+|+..| ...
T Consensus 34 Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 34 LDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred cchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 34444888888888999999999999999999988799999999999999999999999999999999999999 999
Q ss_pred hcCCccccccccCcHHHHHHHHHHHhhh
Q psy6156 122 FGESVLSPYINKLSGAKLKLLQLYIKRS 149 (176)
Q Consensus 122 lGe~~l~P~L~~L~~~k~kLl~iYi~R~ 149 (176)
+|++ +.||+.+| +--+++|.++.
T Consensus 114 vG~a-LvPyyrqL----Lp~ln~f~~k~ 136 (183)
T PF10274_consen 114 VGEA-LVPYYRQL----LPVLNLFKNKN 136 (183)
T ss_pred hhHH-HHHHHHHH----HHHHHHHHhcc
Confidence 9988 99999887 34477887776
No 5
>KOG1820|consensus
Probab=98.34 E-value=2.2e-06 Score=83.18 Aligned_cols=145 Identities=18% Similarity=0.298 Sum_probs=119.1
Q ss_pred hHHHHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHH------HHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHH
Q psy6156 3 TKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS------VFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKV 76 (176)
Q Consensus 3 t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtkl 76 (176)
+.+...++ ..+.+|...++|.++|+++|....+|++. ++-..+....++.....+..+..+.+..+...+.+.
T Consensus 320 ~~ia~~lr-~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~ 398 (815)
T KOG1820|consen 320 ELIAKKLR-PLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDRK 398 (815)
T ss_pred HHHHHhcc-hhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence 34444455 55899999999999999999988777764 444577788999999999999999999999999999
Q ss_pred HhhcCCchH-HhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHHhh
Q psy6156 77 IEQNGKGPV-ELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKR 148 (176)
Q Consensus 77 v~~~~~d~l-~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi~R 148 (176)
++..++-.. ...+.++.|+++...+|+..+||+||--|+.+++.++|++.+..+|..+.+--.++..--+.+
T Consensus 399 ~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~~~~~~~~E~~~p 471 (815)
T KOG1820|consen 399 LRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDKQDIKPKEEKLKP 471 (815)
T ss_pred HhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccchhhhhhhhccc
Confidence 988885333 456789999999999999999999999999999999999999999998887433334444444
No 6
>KOG2956|consensus
Probab=98.03 E-value=4.9e-06 Score=76.03 Aligned_cols=81 Identities=30% Similarity=0.505 Sum_probs=71.6
Q ss_pred ChhHHHHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHHHHhhcChHHHH--HhhhhhhhccCcchHHHHHHHHHHHHh
Q psy6156 1 MLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVT--RILFPLIIAEEHPINLVAIKMLTKVIE 78 (176)
Q Consensus 1 ~~t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAav~~~v~p~~~l--~vL~p~l~~~~~~~~~~aLkmLtklv~ 78 (176)
|+|+++|+.+.|.+-+.+..++|.++++|+...+.|||++|||+|+.+..+ +.+.||+. +.+-+-++++.-.++
T Consensus 429 m~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~----~Lt~sk~~LlqlYin 504 (516)
T KOG2956|consen 429 MLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLE----QLTSSKLNLLQLYIN 504 (516)
T ss_pred HHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhh----hccHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999998754 58999995 355677889998998
Q ss_pred hcCCchH
Q psy6156 79 QNGKGPV 85 (176)
Q Consensus 79 ~~~~d~l 85 (176)
|...+.-
T Consensus 505 Ra~s~~s 511 (516)
T KOG2956|consen 505 RASSSSS 511 (516)
T ss_pred HhhcccC
Confidence 8776543
No 7
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.92 E-value=1.6e-05 Score=46.32 Aligned_cols=30 Identities=27% Similarity=0.509 Sum_probs=26.8
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156 92 IMPALLQAYENQDSCVRKCSVFCMVALYKE 121 (176)
Q Consensus 92 iiP~l~~a~~~~~s~VRKaaVfClVal~~~ 121 (176)
++|.+.+.++|++++||.+|++|+.+++..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999998753
No 8
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.81 E-value=2.8e-05 Score=50.26 Aligned_cols=53 Identities=19% Similarity=0.395 Sum_probs=47.2
Q ss_pred cchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHH
Q psy6156 63 HPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMV 116 (176)
Q Consensus 63 ~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClV 116 (176)
|+....|+..|..+. ....+.+..++++++|.|...+.|.+++||.+|.+|+=
T Consensus 1 p~vR~~A~~aLg~l~-~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 1 PRVRRAAAWALGRLA-EGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHHHCTT-TTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHh-cccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 567788999998865 67778889999999999999999999999999999974
No 9
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.48 E-value=0.00025 Score=52.09 Aligned_cols=71 Identities=25% Similarity=0.365 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHH
Q psy6156 67 LVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKL 139 (176)
Q Consensus 67 ~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~ 139 (176)
-|++-.|..+...++.+ +...+++|+|.+..+++|+++.||-+|..++-.+..+.+++ +.||++++=.+--
T Consensus 4 ~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~-~l~~f~~IF~~L~ 74 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE-ILPYFNEIFDALC 74 (97)
T ss_pred hHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 46777788887677777 99999999999999999999999999999999999999888 8888876544333
No 10
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.46 E-value=0.00064 Score=49.92 Aligned_cols=74 Identities=27% Similarity=0.464 Sum_probs=53.4
Q ss_pred HhCCCchhchHhhHHHHHHHHhcChhHHHHHHHHHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHh
Q psy6156 8 QNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVEL 87 (176)
Q Consensus 8 ~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAav~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~ 87 (176)
..+++ +.+|++.+++.++.++.|++.-||- .|+..|-.++ +..++++..
T Consensus 16 ~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy-----------------------------~AcEaL~ni~-k~~~~~~l~ 64 (97)
T PF12755_consen 16 ALGKD-ISKYLDEILPPVLKCFDDQDSRVRY-----------------------------YACEALYNIS-KVARGEILP 64 (97)
T ss_pred HchHh-HHHHHHHHHHHHHHHcCCCcHHHHH-----------------------------HHHHHHHHHH-HHHHHHHHH
Confidence 34434 6677777777777777777777774 3444444444 334566777
Q ss_pred hhchHHHHHHHhhcCCChhHHHHHH
Q psy6156 88 FLPNIMPALLQAYENQDSCVRKCSV 112 (176)
Q Consensus 88 ~L~~iiP~l~~a~~~~~s~VRKaaV 112 (176)
+.++++++|.+.+.|++..||.+|-
T Consensus 65 ~f~~IF~~L~kl~~D~d~~Vr~~a~ 89 (97)
T PF12755_consen 65 YFNEIFDALCKLSADPDENVRSAAE 89 (97)
T ss_pred HHHHHHHHHHHHHcCCchhHHHHHH
Confidence 9999999999999999999999984
No 11
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.38 E-value=0.0009 Score=47.73 Aligned_cols=98 Identities=15% Similarity=0.186 Sum_probs=71.4
Q ss_pred HHHHHHHHhcChhHHHHHHHHHhh-----cChH--------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHh
Q psy6156 21 IMPALLQAYENQDSCVRKCSVFCM-----VALY--------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVEL 87 (176)
Q Consensus 21 iL~~LLd~~~d~e~~VrkAav~~~-----v~p~--------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~ 87 (176)
+++.+++...|...-+|..++.+. ..++ .+++.|.+++++.++.....|+..|..+... +++....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~-~~~~~~~ 86 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG-PEDNKLI 86 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC-cHHHHHH
Confidence 566777777766655666542221 1111 3778888899998899999999999999843 3333332
Q ss_pred hh-chHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156 88 FL-PNIMPALLQAYENQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 88 ~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~ 119 (176)
.. ..++|.+.+.+++.+.++|+.+.+++..++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 33 468999999999999999999999998775
No 12
>KOG0915|consensus
Probab=97.34 E-value=0.00096 Score=68.08 Aligned_cols=120 Identities=14% Similarity=0.209 Sum_probs=97.9
Q ss_pred HHHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHH--HHhhcChH----------HHHHhhhhhhhccCcchHHHHHHH
Q psy6156 5 VIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS--VFCMVALY----------KVTRILFPLIIAEEHPINLVAIKM 72 (176)
Q Consensus 5 ~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAa--v~~~v~p~----------~~l~vL~p~l~~~~~~~~~~aLkm 72 (176)
+.++- ++.++||+..++|+|..=-=|.+..|+.|+ +|..+=++ .+++-|.+.+.+..|+...++.-.
T Consensus 984 i~~~a-~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclA 1062 (1702)
T KOG0915|consen 984 IAKQA-GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLA 1062 (1702)
T ss_pred HHHHH-HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 33444 577999999999999976668899999985 55443333 277777778889999999999999
Q ss_pred HHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHH---HHHHHHhcCC
Q psy6156 73 LTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCM---VALYKEFGES 125 (176)
Q Consensus 73 Ltklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfCl---Val~~~lGe~ 125 (176)
|.-++++.+.|++.+.+|++--.+.+.|||-+-+||+||-... -.+|..+++.
T Consensus 1063 L~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~ 1118 (1702)
T KOG0915|consen 1063 LADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDV 1118 (1702)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999999999999999999999999999999999999987654 4455555543
No 13
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.32 E-value=0.0018 Score=44.66 Aligned_cols=83 Identities=24% Similarity=0.364 Sum_probs=65.8
Q ss_pred HHHHHHHh-cChhHHHHHHH--HHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHH
Q psy6156 22 MPALLQAY-ENQDSCVRKCS--VFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQ 98 (176)
Q Consensus 22 L~~LLd~~-~d~e~~VrkAa--v~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~ 98 (176)
+|.|++.. .|.+..||..+ .+..+.....++.|...+++.+|.....|+..|.++= -++.+|.+.+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-----------~~~~~~~L~~ 69 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDPEAIPALIELLKDEDPMVRRAAARALGRIG-----------DPEAIPALIK 69 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------HHHTHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------CHHHHHHHHH
Confidence 57788888 78888888876 3445666789999999999999999999999988751 3678999999
Q ss_pred hhcCCCh-hHHHHHHHHH
Q psy6156 99 AYENQDS-CVRKCSVFCM 115 (176)
Q Consensus 99 a~~~~~s-~VRKaaVfCl 115 (176)
.+.+.++ .||.+|+.+|
T Consensus 70 ~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 70 LLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHTC-SSHHHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHhhc
Confidence 9887654 5699888765
No 14
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.21 E-value=0.0033 Score=60.90 Aligned_cols=95 Identities=15% Similarity=0.255 Sum_probs=71.5
Q ss_pred HhhHHHHHHHHhcChhHHHHHHH-----HHhhcChHHHHHhhhhhhhcc---CcchHHHHHHHHHHHHhhcCCchHHhhh
Q psy6156 18 LPNIMPALLQAYENQDSCVRKCS-----VFCMVALYKVTRILFPLIIAE---EHPINLVAIKMLTKVIEQNGKGPVELFL 89 (176)
Q Consensus 18 l~~iL~~LLd~~~d~e~~VrkAa-----v~~~v~p~~~l~vL~p~l~~~---~~~~~~~aLkmLtklv~~~~~d~l~~~L 89 (176)
+..++|.++....-.+--+.+-. +.....|+.++-++..+.++- +.-+.-.||+.|+.+= +.+.+
T Consensus 53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~-------~~el~ 125 (757)
T COG5096 53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLR-------VKELL 125 (757)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcC-------hHHHH
Confidence 44444555544442222333322 455689999999999987554 4556678999999875 67789
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156 90 PNIMPALLQAYENQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 90 ~~iiP~l~~a~~~~~s~VRKaaVfClVal~ 119 (176)
+.++|.+.++.+|+++.|||+|++|+..+|
T Consensus 126 ~~~~~~ik~~l~d~~ayVRk~Aalav~kly 155 (757)
T COG5096 126 GNIIDPIKKLLTDPHAYVRKTAALAVAKLY 155 (757)
T ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998
No 15
>KOG1242|consensus
Probab=97.17 E-value=0.0023 Score=60.05 Aligned_cols=109 Identities=18% Similarity=0.334 Sum_probs=76.7
Q ss_pred hHhhHHHHHHHHhcChhHHHHHHH-------HHhhcChHHHHHhhhhhhhcc----CcchHHHHHHHHHHHHhhc-CCch
Q psy6156 17 FLPNIMPALLQAYENQDSCVRKCS-------VFCMVALYKVTRILFPLIIAE----EHPINLVAIKMLTKVIEQN-GKGP 84 (176)
Q Consensus 17 ~l~~iL~~LLd~~~d~e~~VrkAa-------v~~~v~p~~~l~vL~p~l~~~----~~~~~~~aLkmLtklv~~~-~~d~ 84 (176)
.+..++|.|+||+.|...-+.++. ++.-|.+ .-+..+.|+++.+ ...++-.+......++.-. ++..
T Consensus 330 dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~-psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~ 408 (569)
T KOG1242|consen 330 DIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDA-PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKD 408 (569)
T ss_pred HHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecc-hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHH
Confidence 466777888888887764444442 1112222 3555666666433 3444444455555555444 5778
Q ss_pred HHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCc
Q psy6156 85 VELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESV 126 (176)
Q Consensus 85 l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~ 126 (176)
+...||+++|++...+.++-++||--+-+.+-+++..+|+..
T Consensus 409 lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~ 450 (569)
T KOG1242|consen 409 LAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVS 450 (569)
T ss_pred HhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999973
No 16
>KOG2933|consensus
Probab=96.96 E-value=0.002 Score=56.67 Aligned_cols=79 Identities=8% Similarity=0.198 Sum_probs=69.8
Q ss_pred ChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156 46 ALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 46 ~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~ 125 (176)
.|+..+.-....+.+++|-.+.-+|+++.++. ..-+|.+.+.|-++|..+++.+.|..|.|.|+|+.|+-++..-+++.
T Consensus 85 ~p~~al~~~l~~L~s~dW~~~vdgLn~irrLs-~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~ 163 (334)
T KOG2933|consen 85 DPEAALKQALKKLSSDDWEDKVDGLNSIRRLS-EFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS 163 (334)
T ss_pred cHHHHHHHHHHHhchHHHHHHhhhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556788999999999999999999 66669999999999999999999999999999999999999888776
No 17
>KOG1824|consensus
Probab=96.94 E-value=0.0027 Score=62.62 Aligned_cols=125 Identities=13% Similarity=0.233 Sum_probs=90.6
Q ss_pred CchhchHhhHHHHHHHHhcChhHHHHHHH------HHhhc-----------------Ch----------HHHHHhhhhhh
Q psy6156 12 GPVELFLPNIMPALLQAYENQDSCVRKCS------VFCMV-----------------AL----------YKVTRILFPLI 58 (176)
Q Consensus 12 ~~~e~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v-----------------~p----------~~~l~vL~p~l 58 (176)
|-+..+.-.+=|.++..+++.|+-|+.-. ++..+ +| -.+++++.+++
T Consensus 365 E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~ql 444 (1233)
T KOG1824|consen 365 EMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQL 444 (1233)
T ss_pred HHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHH
Confidence 33445555677888888888887777532 11111 11 12677888888
Q ss_pred hccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCCh--hHHHHHHHHHHHHHHHhcCCccccccccCcH
Q psy6156 59 IAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDS--CVRKCSVFCMVALYKEFGESVLSPYINKLSG 136 (176)
Q Consensus 59 ~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s--~VRKaaVfClVal~~~lGe~~l~P~L~~L~~ 136 (176)
.++..++.++++-+|+.++ ...++.+.+++++++||+.-+++|-+| ..++.+.-|+-..-.--|-+.+.||++.|++
T Consensus 445 r~ks~kt~~~cf~lL~eli-~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~ 523 (1233)
T KOG1824|consen 445 REKSVKTRQGCFLLLTELI-NVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSP 523 (1233)
T ss_pred hhccccchhhHHHHHHHHH-HhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhh
Confidence 8888999999999999999 889999999999999999999997654 4566554444433333444579999998876
Q ss_pred H
Q psy6156 137 A 137 (176)
Q Consensus 137 ~ 137 (176)
-
T Consensus 524 ~ 524 (1233)
T KOG1824|consen 524 P 524 (1233)
T ss_pred H
Confidence 3
No 18
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.89 E-value=0.001 Score=54.05 Aligned_cols=75 Identities=17% Similarity=0.242 Sum_probs=55.8
Q ss_pred hhccCcchHHHHHHHHHHHHhhc----CCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcccccccc
Q psy6156 58 IIAEEHPINLVAIKMLTKVIEQN----GKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINK 133 (176)
Q Consensus 58 l~~~~~~~~~~aLkmLtklv~~~----~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~ 133 (176)
-.+.+|.....||..|.++++.. ..+.+...+.++++++.....|..|.|.|.|..|+..+...+|+. +.||+..
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~-~~~~~~~ 94 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH-FEPYADI 94 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG-GHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh-HHHHHHH
Confidence 36679999999999999999666 234556667788899999999999999999999999999999999 9999753
No 19
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.75 E-value=0.011 Score=43.13 Aligned_cols=86 Identities=21% Similarity=0.298 Sum_probs=70.1
Q ss_pred HhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcccccc
Q psy6156 52 RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYI 131 (176)
Q Consensus 52 ~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L 131 (176)
+-....+++...|+...+|.+|++++++.+ ......+.++..+.....|+.|-|==+||.|++++....+++ +-|
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~-vl~-- 80 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE-VLP-- 80 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH-HHH--
Confidence 333445677788999999999999998877 334457899999999999999999999999999999999887 433
Q ss_pred ccCcHHHHHHHHHHHhhhc
Q psy6156 132 NKLSGAKLKLLQLYIKRSQ 150 (176)
Q Consensus 132 ~~L~~~k~kLl~iYi~R~~ 150 (176)
.|++.|.+..+
T Consensus 81 --------~L~~~y~~~~~ 91 (92)
T PF10363_consen 81 --------ILLDEYADPSE 91 (92)
T ss_pred --------HHHHHHhCccc
Confidence 56777776654
No 20
>KOG2171|consensus
Probab=96.65 E-value=0.01 Score=59.23 Aligned_cols=130 Identities=19% Similarity=0.286 Sum_probs=103.3
Q ss_pred HHHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHHHHh------hcChH-------HHHHhhhhhhhccCc-chHHHHH
Q psy6156 5 VIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFC------MVALY-------KVTRILFPLIIAEEH-PINLVAI 70 (176)
Q Consensus 5 ~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAav~~------~v~p~-------~~l~vL~p~l~~~~~-~~~~~aL 70 (176)
+.|..+ |-++..|+.+++.++...+|....||-||..+ -++|+ +++..|...+.+.+- ....-|-
T Consensus 375 i~EGc~-~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa 453 (1075)
T KOG2171|consen 375 IAEGCS-DVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAA 453 (1075)
T ss_pred HHcccH-HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHH
Confidence 344444 55888999999999999999999999998433 24454 355667777766554 4444466
Q ss_pred HHHHHHHhhcCCchHHhhhchHHH-HHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcH
Q psy6156 71 KMLTKVIEQNGKGPVELFLPNIMP-ALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSG 136 (176)
Q Consensus 71 kmLtklv~~~~~d~l~~~L~~iiP-~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~ 136 (176)
-.+-...+..+++.+.+.||.+|- .+...-.+.++.|+.+||-.+-.+-..-|+. +.||+..+=+
T Consensus 454 ~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~-F~pY~d~~Mp 519 (1075)
T KOG2171|consen 454 AALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK-FIPYFDRLMP 519 (1075)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh-hHhHHHHHHH
Confidence 677778889999999999999999 6778888999999999999999999999999 9999975544
No 21
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.60 E-value=0.0075 Score=42.87 Aligned_cols=70 Identities=17% Similarity=0.247 Sum_probs=59.4
Q ss_pred HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhc-hHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156 50 VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLP-NIMPALLQAYENQDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 50 ~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~-~iiP~l~~a~~~~~s~VRKaaVfClVal~~ 120 (176)
+++.|...+.+.+|.....++..+..+.. .+++.....+. .++|.+.+.+++.++.||+.++.|+-.++.
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSA-GNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAA 78 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHcc
Confidence 67778888888889999999999999984 34555555565 999999999999999999999999988864
No 22
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.60 E-value=0.0085 Score=54.06 Aligned_cols=98 Identities=10% Similarity=0.211 Sum_probs=68.0
Q ss_pred HHHHHHHHhcChhHHHHHHH-----HHhhcChHH---HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchH
Q psy6156 21 IMPALLQAYENQDSCVRKCS-----VFCMVALYK---VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNI 92 (176)
Q Consensus 21 iL~~LLd~~~d~e~~VrkAa-----v~~~v~p~~---~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~i 92 (176)
..+.++.....++-..++-. .+..-+|+. +.+.+.--+++.++...-.||+.+..+. ..+..+.+
T Consensus 43 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-------~~~~~~~l 115 (526)
T PF01602_consen 43 LFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-------TPEMAEPL 115 (526)
T ss_dssp THHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--------SHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-------ccchhhHH
Confidence 34444455554455555533 222345553 3344444456667777778999999987 55667889
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156 93 MPALLQAYENQDSCVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 93 iP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~ 125 (176)
+|.+.+...|+++.|||+|+.|+..+|..-++.
T Consensus 116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~ 148 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL 148 (526)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH
Confidence 999999999999999999999999999985554
No 23
>KOG2171|consensus
Probab=96.58 E-value=0.0055 Score=61.11 Aligned_cols=93 Identities=19% Similarity=0.219 Sum_probs=77.3
Q ss_pred HHhhcChHHHHHhhhhh----hhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHH
Q psy6156 41 VFCMVALYKVTRILFPL----IIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMV 116 (176)
Q Consensus 41 v~~~v~p~~~l~vL~p~----l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClV 116 (176)
+++.++|.+++..+.++ +++.+|.-..++|-.+.... ....|.+..+||.|+|.++...+|+.+-||=||.+|+=
T Consensus 336 lA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~-EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naig 414 (1075)
T KOG2171|consen 336 LALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIA-EGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIG 414 (1075)
T ss_pred HHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 78889999988888776 47889999999999999998 67888899999999999999999999999999988864
Q ss_pred HHHHHhcCCccccccccCcHHHH
Q psy6156 117 ALYKEFGESVLSPYINKLSGAKL 139 (176)
Q Consensus 117 al~~~lGe~~l~P~L~~L~~~k~ 139 (176)
-+ .. |+.|++++=...++
T Consensus 415 Q~----st-dl~p~iqk~~~e~l 432 (1075)
T KOG2171|consen 415 QM----ST-DLQPEIQKKHHERL 432 (1075)
T ss_pred hh----hh-hhcHHHHHHHHHhc
Confidence 33 23 37777765444444
No 24
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.58 E-value=0.0053 Score=55.18 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=77.8
Q ss_pred ChhHHHHHH--HHHhhcChHHHHHhhhhhhh----ccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCC
Q psy6156 31 NQDSCVRKC--SVFCMVALYKVTRILFPLII----AEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQD 104 (176)
Q Consensus 31 d~e~~VrkA--av~~~v~p~~~l~vL~p~l~----~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~ 104 (176)
|.+++..+. +++..+--++++..+.|.+- ..+...+..-+..|..++++.+...+..++++++|-+.++.+-++
T Consensus 299 d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~ 378 (415)
T PF12460_consen 299 DSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPD 378 (415)
T ss_pred CcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 334454443 23434445567777776652 323336777899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhcCCccccccccCcH
Q psy6156 105 SCVRKCSVFCMVALYKEFGESVLSPYINKLSG 136 (176)
Q Consensus 105 s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~ 136 (176)
++|+.++..|+-.+-.--.+- +.+|++.|=+
T Consensus 379 ~~v~~s~L~tL~~~l~~~~~~-i~~hl~sLI~ 409 (415)
T PF12460_consen 379 ADVLLSSLETLKMILEEAPEL-ISEHLSSLIP 409 (415)
T ss_pred HHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHH
Confidence 999999999998776655333 7777775543
No 25
>PTZ00429 beta-adaptin; Provisional
Probab=96.41 E-value=0.012 Score=57.17 Aligned_cols=96 Identities=14% Similarity=0.148 Sum_probs=65.8
Q ss_pred HHHHHHHhcChhHHHHHHH-----HHhhcChHHHHHhhhhhhh---ccCcchHHHHHHHHHHHHhhcCCchHHhhhchHH
Q psy6156 22 MPALLQAYENQDSCVRKCS-----VFCMVALYKVTRILFPLII---AEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIM 93 (176)
Q Consensus 22 L~~LLd~~~d~e~~VrkAa-----v~~~v~p~~~l~vL~p~l~---~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~ii 93 (176)
++.++.+....+-.++|-. ......|+..+-+...+.+ +.++-..-.|||.|..+- +...++.++
T Consensus 70 F~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir-------~~~i~e~l~ 142 (746)
T PTZ00429 70 FVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIR-------VSSVLEYTL 142 (746)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-------cHHHHHHHH
Confidence 3333344444444555532 1222356665555666553 334556667899888876 566788899
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHHHhcC
Q psy6156 94 PALLQAYENQDSCVRKCSVFCMVALYKEFGE 124 (176)
Q Consensus 94 P~l~~a~~~~~s~VRKaaVfClVal~~~lGe 124 (176)
+.+.++..|.++.|||+|+.|+..+|..-++
T Consensus 143 ~~lkk~L~D~~pYVRKtAalai~Kly~~~pe 173 (746)
T PTZ00429 143 EPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ 173 (746)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc
Confidence 9999999999999999999999999986553
No 26
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=96.36 E-value=0.005 Score=38.53 Aligned_cols=39 Identities=13% Similarity=0.278 Sum_probs=29.5
Q ss_pred HHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHH
Q psy6156 72 MLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVF 113 (176)
Q Consensus 72 mLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVf 113 (176)
.+..++ ..++.-+ .-+.+...+.+++.|+++.||+|||.
T Consensus 2 ~l~~iv-~~dp~ll--~~~~v~~~i~~rl~D~s~~VR~aav~ 40 (42)
T PF12765_consen 2 ALSSIV-EKDPTLL--DSSDVQSAIIRRLSDSSPSVREAAVD 40 (42)
T ss_pred hHHHHH-hcCcccc--chHHHHHHHHHHhcCCChHHHHHHHH
Confidence 455555 4444444 33589999999999999999999985
No 27
>KOG1248|consensus
Probab=96.05 E-value=0.06 Score=54.22 Aligned_cols=96 Identities=18% Similarity=0.283 Sum_probs=84.8
Q ss_pred HHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcc
Q psy6156 48 YKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVL 127 (176)
Q Consensus 48 ~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l 127 (176)
++.+..++-+|.+....+.-+||+.+..+|..++..-+..++++++|.+..-.++.+-.+||++-.=+-.|+.++|-+++
T Consensus 826 ~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eL 905 (1176)
T KOG1248|consen 826 EKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEEL 905 (1176)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHH
Confidence 45778888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcHHHHHH-HHHHH
Q psy6156 128 SPYINKLSGAKLKL-LQLYI 146 (176)
Q Consensus 128 ~P~L~~L~~~k~kL-l~iYi 146 (176)
+++++ .-.+|+ -+|--
T Consensus 906 e~~~p---ee~~klL~nIRK 922 (1176)
T KOG1248|consen 906 ESFLP---EEDMKLLTNIRK 922 (1176)
T ss_pred HhhCH---HHHHHHHHHHHH
Confidence 99999 444454 44443
No 28
>PRK09687 putative lyase; Provisional
Probab=95.83 E-value=0.035 Score=47.75 Aligned_cols=43 Identities=12% Similarity=0.254 Sum_probs=30.5
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcccccc-ccCcH
Q psy6156 90 PNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYI-NKLSG 136 (176)
Q Consensus 90 ~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L-~~L~~ 136 (176)
+..+|.|.++.+|...+||++|+..|-. +|+++..|+| ..|..
T Consensus 191 ~~~~~~L~~~L~D~~~~VR~~A~~aLg~----~~~~~av~~Li~~L~~ 234 (280)
T PRK09687 191 PDIREAFVAMLQDKNEEIRIEAIIGLAL----RKDKRVLSVLIKELKK 234 (280)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHc----cCChhHHHHHHHHHcC
Confidence 4678888889999999999999888853 4555455544 34433
No 29
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=95.75 E-value=0.21 Score=40.31 Aligned_cols=114 Identities=18% Similarity=0.233 Sum_probs=83.7
Q ss_pred hhchHhhHHHHHHHHhc------------------ChhHHHHHHHHHhh----------cChHHHHHhhhhhhhccCcch
Q psy6156 14 VELFLPNIMPALLQAYE------------------NQDSCVRKCSVFCM----------VALYKVTRILFPLIIAEEHPI 65 (176)
Q Consensus 14 ~e~~l~~iL~~LLd~~~------------------d~e~~VrkAav~~~----------v~p~~~l~vL~p~l~~~~~~~ 65 (176)
+-|++..++|.+++-.. |.|--+||+|.=|+ ++....+..+...+.+ ++-+
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DI 81 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDI 81 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHH
Confidence 56788999999997764 44788999973332 3444566667777766 7789
Q ss_pred HHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhc----C--CC------hhHHHHHHHHHHHHHHHhcCCcccc
Q psy6156 66 NLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYE----N--QD------SCVRKCSVFCMVALYKEFGESVLSP 129 (176)
Q Consensus 66 ~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~----~--~~------s~VRKaaVfClVal~~~lGe~~l~P 129 (176)
++.+.-|++|++ ...++++...|+.+++.+..-+. + .+ .|.-|+++.|..++...+.+.+-.|
T Consensus 82 k~L~~~~l~kl~-~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~~ 156 (169)
T PF08623_consen 82 KMLCHLMLSKLA-QLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESSP 156 (169)
T ss_dssp HHHHHHHHHHHH-HS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSSH
T ss_pred HHHHHHHHHHHH-HhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccCH
Confidence 999999999999 88899999999999999887773 1 12 3566789999999987776654544
No 30
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=95.73 E-value=0.026 Score=41.91 Aligned_cols=71 Identities=23% Similarity=0.350 Sum_probs=64.0
Q ss_pred CcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCc
Q psy6156 62 EHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLS 135 (176)
Q Consensus 62 ~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~ 135 (176)
....+.-+|+.+..+++ +..+.+...+|+++=+|-.+.+.+ +.|..|+.|--.+...++++++.|++++.-
T Consensus 28 ~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~ 98 (107)
T PF08064_consen 28 PIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIF 98 (107)
T ss_pred CHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 45667789999999996 999999999999999999999887 999999999999999999999999987543
No 31
>KOG1967|consensus
Probab=95.64 E-value=0.026 Score=55.71 Aligned_cols=119 Identities=22% Similarity=0.273 Sum_probs=88.0
Q ss_pred ChhHHHHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHH--HHhh----cChH--HHHHhhhhhh----hccC---cch
Q psy6156 1 MLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS--VFCM----VALY--KVTRILFPLI----IAEE---HPI 65 (176)
Q Consensus 1 ~~t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAa--v~~~----v~p~--~~l~vL~p~l----~~~~---~~~ 65 (176)
++..|+.|.++.-+-|.+..++|-|||+..=.+-.||-.+ .+.+ .++- .=+..+.|.+ .+-+ .-.
T Consensus 890 ~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~V 969 (1030)
T KOG1967|consen 890 ALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVV 969 (1030)
T ss_pred HHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHH
Confidence 4678899999999999999999999999985554443222 1111 1110 1233444442 2223 234
Q ss_pred HHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156 66 NLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 66 ~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~ 119 (176)
...||++|..+.++.+...+...-|+++-++....||++--|||.||.|==+-|
T Consensus 970 R~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 970 REDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred HHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence 568999999999889999999999999999999999999999999999865443
No 32
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.58 E-value=0.078 Score=52.30 Aligned_cols=98 Identities=17% Similarity=0.124 Sum_probs=65.8
Q ss_pred HHHHHHHHhcChhHHHHHHHHHh--hcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCch-H------------
Q psy6156 21 IMPALLQAYENQDSCVRKCSVFC--MVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGP-V------------ 85 (176)
Q Consensus 21 iL~~LLd~~~d~e~~VrkAav~~--~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~-l------------ 85 (176)
.++.|++..+|.+..||++|+-. ...+...++.|...+++.++.....|++.|.++.+..+... +
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR 701 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVR 701 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHH
Confidence 56677788888888888876332 23455677888888888888888888887777654332211 1
Q ss_pred ---Hhhhch----HHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy6156 86 ---ELFLPN----IMPALLQAYENQDSCVRKCSVFCMVAL 118 (176)
Q Consensus 86 ---~~~L~~----iiP~l~~a~~~~~s~VRKaaVfClVal 118 (176)
...|+. -.+.+.++++|+++.||++|+.+|..+
T Consensus 702 ~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 702 AAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSV 741 (897)
T ss_pred HHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 111111 134577888899999999999888764
No 33
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.57 E-value=0.21 Score=42.84 Aligned_cols=116 Identities=13% Similarity=0.265 Sum_probs=88.4
Q ss_pred hHHHHHhCCCchhc--hHhhHHHHHH-HHhcChhHHHHHHH-----HHhhcChHH---HHHhhhhhhhccCcchHHHHHH
Q psy6156 3 TKVIEQNGKGPVEL--FLPNIMPALL-QAYENQDSCVRKCS-----VFCMVALYK---VTRILFPLIIAEEHPINLVAIK 71 (176)
Q Consensus 3 t~~~e~~~~~~~e~--~l~~iL~~LL-d~~~d~e~~VrkAa-----v~~~v~p~~---~l~vL~p~l~~~~~~~~~~aLk 71 (176)
..++|+.. ..+.+ .+..++..|+ -+..+.+..||+.+ ++|++.... .+..+...++.++.+.+..|++
T Consensus 8 ~~lL~~~~-~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~ 86 (298)
T PF12719_consen 8 QSLLENVS-SSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALK 86 (298)
T ss_pred HHHHHhcc-ccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 44566666 44555 4557777777 56677778899876 566676653 6667777777778899999999
Q ss_pred HHHHHHhhcCCchHHhhhc--------hHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156 72 MLTKVIEQNGKGPVELFLP--------NIMPALLQAYENQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 72 mLtklv~~~~~d~l~~~L~--------~iiP~l~~a~~~~~s~VRKaaVfClVal~ 119 (176)
.+.-++-..+.+.+...-. .+...+.+.+++.++++|-.|+-++-.|.
T Consensus 87 ~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 87 ALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 9999988888877755554 78888999999999999999999887754
No 34
>KOG0915|consensus
Probab=95.30 E-value=0.07 Score=55.09 Aligned_cols=129 Identities=22% Similarity=0.229 Sum_probs=92.0
Q ss_pred CCchhchHhhHHHHHHHHhcChhHHHHHHH---HHhhc--Ch-HH-------HHHhhhhhhhccCcchHH---HHHHHHH
Q psy6156 11 KGPVELFLPNIMPALLQAYENQDSCVRKCS---VFCMV--AL-YK-------VTRILFPLIIAEEHPINL---VAIKMLT 74 (176)
Q Consensus 11 ~~~~e~~l~~iL~~LLd~~~d~e~~VrkAa---v~~~v--~p-~~-------~l~vL~p~l~~~~~~~~~---~aLkmLt 74 (176)
|.-++.|+..|+--|+..+.+++==||+|+ +...+ .| ++ .+..+.....+=+.-+.. .+.+.++
T Consensus 1030 k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~ls 1109 (1702)
T KOG0915|consen 1030 KKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALS 1109 (1702)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999998899985 22221 22 22 222222233333443333 4678888
Q ss_pred HHHhhcC-Cc---hHHhhhchHHHHHH-HhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHH
Q psy6156 75 KVIEQNG-KG---PVELFLPNIMPALL-QAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLK 140 (176)
Q Consensus 75 klv~~~~-~d---~l~~~L~~iiP~l~-~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~k 140 (176)
|++-++. .+ .-.+.++.++|.|. +++-++-.+||+.++..+++|..--|.+ ++||++.|.+.=++
T Consensus 1110 Kl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~-lkP~~~~LIp~ll~ 1179 (1702)
T KOG0915|consen 1110 KLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKE-LKPHFPKLIPLLLN 1179 (1702)
T ss_pred HHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhh-hcchhhHHHHHHHH
Confidence 8764543 22 22567899999977 7777999999999999999999999999 99999988775443
No 35
>KOG2023|consensus
Probab=95.12 E-value=0.046 Score=52.68 Aligned_cols=100 Identities=18% Similarity=0.230 Sum_probs=77.2
Q ss_pred hHhhHHHHHHHHhcChhHHHHHHH--HH-hhcCh------HHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCC----c
Q psy6156 17 FLPNIMPALLQAYENQDSCVRKCS--VF-CMVAL------YKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGK----G 83 (176)
Q Consensus 17 ~l~~iL~~LLd~~~d~e~~VrkAa--v~-~~v~p------~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~----d 83 (176)
.++-+=..+|++.+|++.-+|... +. ..+.- ...+..|+..+.+.++-+..+|++.|+|++|..+. |
T Consensus 87 ~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~ 166 (885)
T KOG2023|consen 87 VLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSD 166 (885)
T ss_pred HHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhh
Confidence 444556678889999998888643 11 11211 34888999999999999999999999999966443 3
Q ss_pred hHHhhhchHHHHHHHhhcCCChhHHHHHHHHHH
Q psy6156 84 PVELFLPNIMPALLQAYENQDSCVRKCSVFCMV 116 (176)
Q Consensus 84 ~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClV 116 (176)
-...-|.-+||.+.+-|.|+++.+|+-|++|.-
T Consensus 167 ~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvN 199 (885)
T KOG2023|consen 167 VLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVN 199 (885)
T ss_pred cccCchHHhHHHHHHHHhCCChhHHHHHHhhhh
Confidence 334567889999999999999999999999964
No 36
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.07 E-value=0.083 Score=52.12 Aligned_cols=83 Identities=18% Similarity=0.155 Sum_probs=54.2
Q ss_pred HHHHHHHhcChhHHHHHHHHHhh---cChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHH
Q psy6156 22 MPALLQAYENQDSCVRKCSVFCM---VALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQ 98 (176)
Q Consensus 22 L~~LLd~~~d~e~~VrkAav~~~---v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~ 98 (176)
++.|+..++|.+..||.+++..+ -.+......|...+++.+|....+|++.|.++- . ++-+|.|..
T Consensus 777 ~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~----~-------~~a~~~L~~ 845 (897)
T PRK13800 777 GDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAA----A-------DVAVPALVE 845 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcc----c-------cchHHHHHH
Confidence 56777888888888888764322 223345556777778888888888888776532 1 123366666
Q ss_pred hhcCCChhHHHHHHHHH
Q psy6156 99 AYENQDSCVRKCSVFCM 115 (176)
Q Consensus 99 a~~~~~s~VRKaaVfCl 115 (176)
+++|++.+||++|+..|
T Consensus 846 ~L~D~~~~VR~~A~~aL 862 (897)
T PRK13800 846 ALTDPHLDVRKAAVLAL 862 (897)
T ss_pred HhcCCCHHHHHHHHHHH
Confidence 66677777777776665
No 37
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=95.02 E-value=0.29 Score=43.00 Aligned_cols=150 Identities=16% Similarity=0.167 Sum_probs=110.3
Q ss_pred HHHH-HhCCCchhchHhhHHHHHHHHhcCh-hHHHHHHH------HHhhcChHH-------HHHhhhhhhhccCcchHHH
Q psy6156 4 KVIE-QNGKGPVELFLPNIMPALLQAYENQ-DSCVRKCS------VFCMVALYK-------VTRILFPLIIAEEHPINLV 68 (176)
Q Consensus 4 ~~~e-~~~~~~~e~~l~~iL~~LLd~~~d~-e~~VrkAa------v~~~v~p~~-------~l~vL~p~l~~~~~~~~~~ 68 (176)
|+++ ....-+..|+=..+--+|-+|...+ -.-|+..| +|..+.++. -..-|.|.+..+.-+++-.
T Consensus 37 k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~ 116 (307)
T PF04118_consen 37 KALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQ 116 (307)
T ss_pred HHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHH
Confidence 4455 3333334555556666677777655 35666654 666666665 3456777788777788888
Q ss_pred HHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcccccc--ccCcHHHHHH-HHHH
Q psy6156 69 AIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYI--NKLSGAKLKL-LQLY 145 (176)
Q Consensus 69 aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L--~~L~~~k~kL-l~iY 145 (176)
-|++..+.+-.+++ .+...++.++.++.-++++.++|+-+-+...+-.++..+|++-+..-+ .-++....|+ --.|
T Consensus 117 lL~i~e~~~lpL~~-~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii~sp~~Rl~al~~ 195 (307)
T PF04118_consen 117 LLDIYEKYYLPLGP-ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCIITSPSRRLGALNY 195 (307)
T ss_pred HHHHHHHHhcCccH-HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHhcCcchhHHHHHH
Confidence 99999998889999 999999999999999999999999999999999999999999332211 4556666666 5568
Q ss_pred HhhhcccCC
Q psy6156 146 IKRSQTHSS 154 (176)
Q Consensus 146 i~R~~~~~~ 154 (176)
+.|.-.+..
T Consensus 196 l~~~l~~~~ 204 (307)
T PF04118_consen 196 LLRRLPKFQ 204 (307)
T ss_pred HHHhCCccc
Confidence 888766544
No 38
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=94.89 E-value=0.074 Score=36.36 Aligned_cols=66 Identities=20% Similarity=0.358 Sum_probs=49.3
Q ss_pred HHhhhhhh-hccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcccc
Q psy6156 51 TRILFPLI-IAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSP 129 (176)
Q Consensus 51 l~vL~p~l-~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P 129 (176)
++.|...+ ++.+|.....+++.|.++- -++.+|.+.+.++|+++.||.+|++.+-.+ |+++..|
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~~~~~~~ 65 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRI----GDPEAIP 65 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----HHHHTHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----CCHHHHH
Confidence 34566667 6778888889999988332 227799999999999999999999988754 5544444
Q ss_pred cc
Q psy6156 130 YI 131 (176)
Q Consensus 130 ~L 131 (176)
.|
T Consensus 66 ~L 67 (88)
T PF13646_consen 66 AL 67 (88)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 39
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.80 E-value=0.067 Score=42.59 Aligned_cols=78 Identities=12% Similarity=0.155 Sum_probs=57.1
Q ss_pred HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcccc
Q psy6156 50 VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSP 129 (176)
Q Consensus 50 ~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P 129 (176)
.++.+...+++.++.....|+.++++++.. +. ...=+.++..+..+..|++++||..|.+|+..+....+..-+..
T Consensus 26 ~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~---ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~ 101 (178)
T PF12717_consen 26 YLPNLYKCLRDEDPLVRKTALLVLSHLILE-DM---IKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYN 101 (178)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-Cc---eeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 455666667777777888889999998832 21 12225566788888899999999999999999998855443555
Q ss_pred cc
Q psy6156 130 YI 131 (176)
Q Consensus 130 ~L 131 (176)
++
T Consensus 102 ~~ 103 (178)
T PF12717_consen 102 NF 103 (178)
T ss_pred HH
Confidence 44
No 40
>KOG1243|consensus
Probab=94.59 E-value=0.47 Score=45.76 Aligned_cols=73 Identities=16% Similarity=0.328 Sum_probs=66.3
Q ss_pred HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156 50 VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 50 ~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~ 125 (176)
++.+|.+.+..-+-++.+.=|.-+.+.+++++++++ -+.+.|++..+|.|+++.+|-..|.||..+.-.+|..
T Consensus 331 i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~---~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 331 IIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQIL---NDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred hhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhh---cchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 788888888888889999999999999999998877 5689999999999999999999999999998888776
No 41
>PRK09687 putative lyase; Provisional
Probab=94.34 E-value=0.29 Score=42.09 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=14.8
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHH
Q psy6156 90 PNIMPALLQAYENQDSCVRKCSVFCM 115 (176)
Q Consensus 90 ~~iiP~l~~a~~~~~s~VRKaaVfCl 115 (176)
+..++.+..++.|.++.||.+|+..|
T Consensus 127 ~~a~~~l~~~~~D~~~~VR~~a~~aL 152 (280)
T PRK09687 127 PKIVEQSQITAFDKSTNVRFAVAFAL 152 (280)
T ss_pred hHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 34455555555555666666666655
No 42
>KOG0212|consensus
Probab=93.82 E-value=0.67 Score=44.08 Aligned_cols=117 Identities=15% Similarity=0.176 Sum_probs=91.9
Q ss_pred HHhCCCchhchHhhHHHHHHHHhcChhHHHHHHH-----HHh--------hcChHHHHHhhhhhhhccCcchHHHHHHHH
Q psy6156 7 EQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS-----VFC--------MVALYKVTRILFPLIIAEEHPINLVAIKML 73 (176)
Q Consensus 7 e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAa-----v~~--------~v~p~~~l~vL~p~l~~~~~~~~~~aLkmL 73 (176)
-+..+..+-.||+.+.-.+=...+|.+..||.+| ++. .++....++.|...+...+.-+.+..++-+
T Consensus 112 aKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl 191 (675)
T KOG0212|consen 112 AKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWL 191 (675)
T ss_pred HHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 3455677889999999999999999998888876 111 345566777787777777777777888887
Q ss_pred HHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcC
Q psy6156 74 TKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGE 124 (176)
Q Consensus 74 tklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe 124 (176)
.-+- ..+.-++-.++|++.|||..-..|++.+||.-+--|+-++-.-+.+
T Consensus 192 ~~Ld-s~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s 241 (675)
T KOG0212|consen 192 YVLD-SVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRS 241 (675)
T ss_pred HHHh-cCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc
Confidence 7665 6666688899999999999999999999998777777777665544
No 43
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.81 E-value=0.73 Score=36.60 Aligned_cols=126 Identities=17% Similarity=0.292 Sum_probs=86.5
Q ss_pred chHhhHHHHHHHHhcChhHHHHHHHHHhh--------cChHH-HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHH
Q psy6156 16 LFLPNIMPALLQAYENQDSCVRKCSVFCM--------VALYK-VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVE 86 (176)
Q Consensus 16 ~~l~~iL~~LLd~~~d~e~~VrkAav~~~--------v~p~~-~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~ 86 (176)
..+++.+|.+..+..|.+..||+.|+.+. +.+.. .+..+.-.+.+.++.+...|...+.++....+++.+.
T Consensus 21 ~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~ 100 (178)
T PF12717_consen 21 NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIY 100 (178)
T ss_pred HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHH
Confidence 56778899999999999999999874443 22222 3244444567888889999999999999888999999
Q ss_pred hhhchHHHHHHHhhcCC-----ChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHHhhhcccCC
Q psy6156 87 LFLPNIMPALLQAYENQ-----DSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSS 154 (176)
Q Consensus 87 ~~L~~iiP~l~~a~~~~-----~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi~R~~~~~~ 154 (176)
+++++++-.+.....++ +.+-|+....=+ -.|+++ +..+..|++-+.+|-.....
T Consensus 101 ~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fl------------l~~i~~-d~~~~~l~~kl~~~~~~~~~ 160 (178)
T PF12717_consen 101 NNFPELISSLNNCYEHPVYGPLSREKRKKIYKFL------------LDFIDK-DKQKESLVEKLCQRFLNAVV 160 (178)
T ss_pred HHHHHHHHHHhCccccccccccCHHHHHHHHHHH------------HHHcCc-HHHHHHHHHHHHHHHHHHcc
Confidence 99999998888776543 333344222211 223333 45566777777777665543
No 44
>KOG2023|consensus
Probab=93.80 E-value=0.31 Score=47.24 Aligned_cols=126 Identities=15% Similarity=0.261 Sum_probs=93.8
Q ss_pred hhHHHHHHHHhcCh-----h---HHHHHH----H-HHhh----cChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcC
Q psy6156 19 PNIMPALLQAYENQ-----D---SCVRKC----S-VFCM----VALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNG 81 (176)
Q Consensus 19 ~~iL~~LLd~~~d~-----e---~~VrkA----a-v~~~----v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~ 81 (176)
..++|.|.+..+.. | .++.|- | ++.. =|..-.++-+..++++....+..-|++++..++ -+.
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i-~~~ 205 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFI-IIQ 205 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhee-ecC
Confidence 66778877777643 1 333332 1 2222 233345556666778888888889999999999 788
Q ss_pred CchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHHhhhcccC
Q psy6156 82 KGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHS 153 (176)
Q Consensus 82 ~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi~R~~~~~ 153 (176)
.+.+..+++.++-++...-+|.+++|||.+--.+|-+.-+.-+. +.||+.+ .++--++|.|...
T Consensus 206 ~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk-l~phl~~-------IveyML~~tqd~d 269 (885)
T KOG2023|consen 206 TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK-LVPHLDN-------IVEYMLQRTQDVD 269 (885)
T ss_pred cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh-cccchHH-------HHHHHHHHccCcc
Confidence 88999999999999999999999999999999999777776666 9999874 4666667766554
No 45
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=93.59 E-value=0.95 Score=40.82 Aligned_cols=98 Identities=15% Similarity=0.162 Sum_probs=74.4
Q ss_pred hHhhHHHHHHHHhcChhHHHHHHH---HHhhcChHH---HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhc
Q psy6156 17 FLPNIMPALLQAYENQDSCVRKCS---VFCMVALYK---VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLP 90 (176)
Q Consensus 17 ~l~~iL~~LLd~~~d~e~~VrkAa---v~~~v~p~~---~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~ 90 (176)
.+..+...+..-..|.++.+|-.| +.....|+- +++.+...+.+..+-..-.|+-.+.+++ +..++.+...
T Consensus 76 ~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~-~~~p~~~~~~-- 152 (526)
T PF01602_consen 76 LLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIY-RKDPDLVEDE-- 152 (526)
T ss_dssp HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHH-HHCHCCHHGG--
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHh-ccCHHHHHHH--
Confidence 566677888887888888888766 222334432 5555666678888888888999999999 5577766443
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy6156 91 NIMPALLQAYENQDSCVRKCSVFCMVAL 118 (176)
Q Consensus 91 ~iiP~l~~a~~~~~s~VRKaaVfClVal 118 (176)
++|.+.+.+.|+++.|+-+|+.++-++
T Consensus 153 -~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 153 -LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp -HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred -HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 799999999999999999999988888
No 46
>KOG0212|consensus
Probab=93.46 E-value=0.36 Score=45.86 Aligned_cols=111 Identities=10% Similarity=0.248 Sum_probs=90.1
Q ss_pred CCCchhchHhhHHHHHHHHhcChhHH-HHHHH------HHhh---------cChHHHHHhhhhhhhccCcchHHHHHHHH
Q psy6156 10 GKGPVELFLPNIMPALLQAYENQDSC-VRKCS------VFCM---------VALYKVTRILFPLIIAEEHPINLVAIKML 73 (176)
Q Consensus 10 ~~~~~e~~l~~iL~~LLd~~~d~e~~-VrkAa------v~~~---------v~p~~~l~vL~p~l~~~~~~~~~~aLkmL 73 (176)
++..+-+++..++.+++.|..|.+.. .+.++ +... ++.-..+++|.-++.++...++.++|+-+
T Consensus 281 ~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi 360 (675)
T KOG0212|consen 281 PGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWI 360 (675)
T ss_pred CCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 34447799999999999999998764 55543 1111 23335888999999999999999999999
Q ss_pred HHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156 74 TKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKE 121 (176)
Q Consensus 74 tklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~ 121 (176)
..+. +..+.++..+.+++.+.+.....|++.+|---+.+-+-.+|.-
T Consensus 361 ~~l~-~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 361 ILLY-HKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS 407 (675)
T ss_pred HHHH-hhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence 9998 7788899999999999999999999999988887777766643
No 47
>KOG0213|consensus
Probab=92.96 E-value=0.83 Score=45.03 Aligned_cols=138 Identities=17% Similarity=0.294 Sum_probs=97.2
Q ss_pred hHHHHHh-CCCchhchHh--hHHHHHHHHhcChh---------HHHHHHH-HHhhcChHH-HHHhhhhhhhccCcchHHH
Q psy6156 3 TKVIEQN-GKGPVELFLP--NIMPALLQAYENQD---------SCVRKCS-VFCMVALYK-VTRILFPLIIAEEHPINLV 68 (176)
Q Consensus 3 t~~~e~~-~~~~~e~~l~--~iL~~LLd~~~d~e---------~~VrkAa-v~~~v~p~~-~l~vL~p~l~~~~~~~~~~ 68 (176)
-||++++ +.+++++-+. .++|.++.++.... ..|..++ ++.-+--.. +-+++.++ .+...|-...
T Consensus 657 LKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~l-kde~e~yrkm 735 (1172)
T KOG0213|consen 657 LKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDL-KDEPEQYRKM 735 (1172)
T ss_pred HHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhh-ccccHHHHHH
Confidence 3566665 6677777443 78999999887543 3333332 332333333 33344333 3444555566
Q ss_pred HHHHHHHHHhhcCCchHHhhhc-hHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHH
Q psy6156 69 AIKMLTKVIEQNGKGPVELFLP-NIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQ 143 (176)
Q Consensus 69 aLkmLtklv~~~~~d~l~~~L~-~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~ 143 (176)
+....++++.+++.-.+.+.|- .++-+++-||.++..++. --..|+=.++..+|-. ++||++++-+.=+++++
T Consensus 736 ~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r-~kpylpqi~stiL~rLn 809 (1172)
T KOG0213|consen 736 VAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGR-VKPYLPQICSTILWRLN 809 (1172)
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhc-cccchHHHHHHHHHHhc
Confidence 7788899999999998888774 789999999999998887 4456788889999988 99999999888877664
No 48
>KOG0166|consensus
Probab=92.95 E-value=0.48 Score=44.40 Aligned_cols=112 Identities=14% Similarity=0.233 Sum_probs=83.8
Q ss_pred CCchhchHhhHHHHHHHHhcChh-HHHHHHHHHhh----cChHH--------HHHhhhhhhhccCcchHHHHHHHHHHHH
Q psy6156 11 KGPVELFLPNIMPALLQAYENQD-SCVRKCSVFCM----VALYK--------VTRILFPLIIAEEHPINLVAIKMLTKVI 77 (176)
Q Consensus 11 ~~~~e~~l~~iL~~LLd~~~d~e-~~VrkAav~~~----v~p~~--------~l~vL~p~l~~~~~~~~~~aLkmLtklv 77 (176)
+.|-...+..++|.|.....+.+ ++.-+|+-+.. -+++. +.+.|.+.+.+.+.++...||+++..++
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv 307 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV 307 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence 34444677889999999998876 44444532211 23332 6677888899999999999999999977
Q ss_pred hhcCCchHHhhh-chHHHHHHHhhc-CCChhHHHHHHHHHHHHHHHhcCC
Q psy6156 78 EQNGKGPVELFL-PNIMPALLQAYE-NQDSCVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 78 ~~~~~d~l~~~L-~~iiP~l~~a~~-~~~s~VRKaaVfClVal~~~lGe~ 125 (176)
..+.++....+ ...+|+|...+. +++..+||.|.+.+-.++. |+.
T Consensus 308 -tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~ 354 (514)
T KOG0166|consen 308 -TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA--GNQ 354 (514)
T ss_pred -eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CCH
Confidence 66666666665 489999998888 7888899999999988776 665
No 49
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.89 E-value=0.46 Score=36.35 Aligned_cols=69 Identities=13% Similarity=0.227 Sum_probs=47.8
Q ss_pred HHHHHhhhhhhhccC-cchHHHHHHHHHHHHhhcCCchHHhhhc--hHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy6156 48 YKVTRILFPLIIAEE-HPINLVAIKMLTKVIEQNGKGPVELFLP--NIMPALLQAYENQDSCVRKCSVFCMVAL 118 (176)
Q Consensus 48 ~~~l~vL~p~l~~~~-~~~~~~aLkmLtklv~~~~~d~l~~~L~--~iiP~l~~a~~~~~s~VRKaaVfClVal 118 (176)
+..++.|..++.+++ ..+...|+.=+..+++..+.. ...+. ..-..+.+-|+|++++||+.|..|+=.+
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g--r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG--RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG--HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhH--HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 459999999996554 444556888899999665332 22332 2455678899999999999999997655
No 50
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=92.85 E-value=0.77 Score=41.80 Aligned_cols=95 Identities=13% Similarity=0.048 Sum_probs=55.8
Q ss_pred HHHHHHHhcChhHHHHHHH--HHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHH-----------HhhcCCc---hH
Q psy6156 22 MPALLQAYENQDSCVRKCS--VFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKV-----------IEQNGKG---PV 85 (176)
Q Consensus 22 L~~LLd~~~d~e~~VrkAa--v~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtkl-----------v~~~~~d---~l 85 (176)
+..|+++..|.++-||.++ -+..+....+...|.+.+.+.+....-+++..+..- ++.-++. +-
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~~~~~L~~~L~d~d~~Vra~A 167 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRHDPGPALEAALTHEDALVRAAA 167 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhccChHHHHHHHhcCCCHHHHHHH
Confidence 6777777777777677654 223456666777777777666654444444443321 1100000 00
Q ss_pred Hhh-----hchHHHHHHHhhcCCChhHHHHHHHHHH
Q psy6156 86 ELF-----LPNIMPALLQAYENQDSCVRKCSVFCMV 116 (176)
Q Consensus 86 ~~~-----L~~iiP~l~~a~~~~~s~VRKaaVfClV 116 (176)
-.. -.+..|.|..+.+|.+++||.+|+..+.
T Consensus 168 ~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~ 203 (410)
T TIGR02270 168 LRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGL 203 (410)
T ss_pred HHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHH
Confidence 011 1345677788888888888888888883
No 51
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=92.84 E-value=2 Score=39.74 Aligned_cols=127 Identities=14% Similarity=0.286 Sum_probs=84.4
Q ss_pred HHHHhcChh-HHHHHHH-----HHhhcChHHHH----HhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhh-chHH
Q psy6156 25 LLQAYENQD-SCVRKCS-----VFCMVALYKVT----RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFL-PNIM 93 (176)
Q Consensus 25 LLd~~~d~e-~~VrkAa-----v~~~v~p~~~l----~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L-~~ii 93 (176)
+++++.+.+ +.+..+. ++...+|...+ ..|...+.+.+...+..+++.+.+++++ +...+.... .+++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~-~~~~~~~~~~~~l~ 121 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARH-SEGAAQLLVDNELL 121 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-CHHHHHHhcCccHH
Confidence 677777552 3333322 44455665544 4455556777888888999999998843 333233233 6899
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHH-------HhcCCccccccccCcH-----HHHHHHHHHHhhhcccC
Q psy6156 94 PALLQAYENQDSCVRKCSVFCMVALYK-------EFGESVLSPYINKLSG-----AKLKLLQLYIKRSQTHS 153 (176)
Q Consensus 94 P~l~~a~~~~~s~VRKaaVfClVal~~-------~lGe~~l~P~L~~L~~-----~k~kLl~iYi~R~~~~~ 153 (176)
|.+..+..|++.+|.|+|...+-.+.. ++++. +.++|..|.. .+.|..+++++-++.+.
T Consensus 122 ~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~-~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~ 192 (503)
T PF10508_consen 122 PLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSN-LLSKLKSLMSQSSDIVRCRVYELLVEIASHSP 192 (503)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcc-hHHHHHHHHhccCHHHHHHHHHHHHHHHhcCH
Confidence 999999999999999999999998852 22222 3555654332 46888888888876553
No 52
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=92.64 E-value=0.32 Score=36.34 Aligned_cols=67 Identities=24% Similarity=0.294 Sum_probs=58.2
Q ss_pred chHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcccccccc
Q psy6156 64 PINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINK 133 (176)
Q Consensus 64 ~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~ 133 (176)
.-+.-+|+.+..+++ .....+...+|+++=+|-.|.+ .++.|..|..|--.+...+.++++.|.+.+
T Consensus 30 ~ek~~~i~ai~~lI~-~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~l~~ll~~ 96 (107)
T smart00802 30 NEKKRALRSIGFLIK-LMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEELGPLLDQ 96 (107)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 347789999999996 5668899999999999999998 456999999999999999999988887753
No 53
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.27 E-value=0.8 Score=39.47 Aligned_cols=93 Identities=20% Similarity=0.230 Sum_probs=57.2
Q ss_pred HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHH---hhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156 49 KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVE---LFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 49 ~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~---~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~ 125 (176)
..+..+..+++..++.+...|.++++.++...+...-. ..++.++..+..-..+.++++...++.|+..+ +..+
T Consensus 105 ~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~L---L~~~ 181 (312)
T PF03224_consen 105 DPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNL---LRSK 181 (312)
T ss_dssp --HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHH---HTSH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHH---hCcc
Confidence 35555555778889999999999999999555554444 55666666666655566777888888888876 4556
Q ss_pred ccccccccCcHHHHHHHHHH
Q psy6156 126 VLSPYINKLSGAKLKLLQLY 145 (176)
Q Consensus 126 ~l~P~L~~L~~~k~kLl~iY 145 (176)
..+..+-+ +++-..|.++.
T Consensus 182 ~~R~~f~~-~~~v~~l~~iL 200 (312)
T PF03224_consen 182 EYRQVFWK-SNGVSPLFDIL 200 (312)
T ss_dssp HHHHHHHT-HHHHHHHHHHH
T ss_pred hhHHHHHh-cCcHHHHHHHH
Confidence 57666655 44445556644
No 54
>KOG1943|consensus
Probab=91.96 E-value=0.56 Score=47.29 Aligned_cols=132 Identities=20% Similarity=0.273 Sum_probs=88.2
Q ss_pred hhchHhhHHHHHHHHhcChhHHHHHHH------HHhhcChHHHHHhhhhhhh---cc-CcchHHHHHHHHHHHHhhcCCc
Q psy6156 14 VELFLPNIMPALLQAYENQDSCVRKCS------VFCMVALYKVTRILFPLII---AE-EHPINLVAIKMLTKVIEQNGKG 83 (176)
Q Consensus 14 ~e~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~p~~~l~vL~p~l~---~~-~~~~~~~aLkmLtklv~~~~~d 83 (176)
+-..+|-++.-|+....|.+..||=.| +...+|++-.-.++-.++. -. ++-.-++++=.|.++. +.+-
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA-~rGl- 412 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELA-LRGL- 412 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHH-hcCC-
Confidence 447888999999999999999998643 5556777653333333332 11 1223346666667665 2221
Q ss_pred hHHhhhchHHHHHHHhhc--------CCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHHhhh
Q psy6156 84 PVELFLPNIMPALLQAYE--------NQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRS 149 (176)
Q Consensus 84 ~l~~~L~~iiP~l~~a~~--------~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi~R~ 149 (176)
.+...++++.|.+.++.+ .....||.||-|-.-|++..-...+|+|++.+|.+.=+ ....-+|.
T Consensus 413 Llps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL--~~AlFDre 484 (1133)
T KOG1943|consen 413 LLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALL--IVALFDRE 484 (1133)
T ss_pred cchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHH--HHHhcCch
Confidence 123345677777776654 45567999999999999998888899999998887643 44444443
No 55
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=91.83 E-value=1.9 Score=41.56 Aligned_cols=115 Identities=14% Similarity=0.258 Sum_probs=85.4
Q ss_pred HHHHHHHHhcChh--HHHHHHHHHhhc-Ch--HHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhc-hHHH
Q psy6156 21 IMPALLQAYENQD--SCVRKCSVFCMV-AL--YKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLP-NIMP 94 (176)
Q Consensus 21 iL~~LLd~~~d~e--~~VrkAav~~~v-~p--~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~-~iiP 94 (176)
++..|+|.|-..+ .+++ +++.+ .| -..+..|..++... +..+.+|.+|..++ +..+--+..++. .+++
T Consensus 40 l~~~l~~y~~~t~s~~~~~---il~~~~~P~~K~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v-~~qp~~l~~i~~t~Lf~ 113 (668)
T PF04388_consen 40 LVNGLVDYYLSTNSQRALE---ILVGVQEPHDKHLFDKLNDYFVKP--SYRLQALTLLGHFV-RSQPPWLYKILQTPLFK 113 (668)
T ss_pred HHHHHHHHHhhcCcHHHHH---HHHhcCCccHHHHHHHHHHHHcCc--hhHHHHHHHHHHHH-hcCCchHHHHhcChhHH
Confidence 4888899988765 3333 55444 56 45899999999754 57789999999999 777777777776 7888
Q ss_pred HHHHhhc-CCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHHhhh
Q psy6156 95 ALLQAYE-NQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRS 149 (176)
Q Consensus 95 ~l~~a~~-~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi~R~ 149 (176)
.|.++.. |++..|=-+|+.|++.+-=.+... +.|||+ .|++||.-=.
T Consensus 114 ~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~-l~~~L~-------~Lf~If~Rl~ 161 (668)
T PF04388_consen 114 SLLKCLQFDTSITVVSSALLVLIMLLPHIPSS-LGPHLP-------DLFNIFGRLL 161 (668)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHhccccch-hhHHHH-------HHHHHHHHHH
Confidence 8887765 888888899999999765555554 555555 6788887544
No 56
>KOG1967|consensus
Probab=91.81 E-value=0.9 Score=45.29 Aligned_cols=116 Identities=18% Similarity=0.337 Sum_probs=79.3
Q ss_pred hchHhhHHHHHHHHhcCh----hHHHHHH--HHHhhcChHHHH---Hhhhhhh----hccCcchHHHHHHHHHHHHhhcC
Q psy6156 15 ELFLPNIMPALLQAYENQ----DSCVRKC--SVFCMVALYKVT---RILFPLI----IAEEHPINLVAIKMLTKVIEQNG 81 (176)
Q Consensus 15 e~~l~~iL~~LLd~~~d~----e~~VrkA--av~~~v~p~~~l---~vL~p~l----~~~~~~~~~~aLkmLtklv~~~~ 81 (176)
+-||-.+.|.|.+.|.-+ +....+| =|...+|-+.++ +-|.|++ +-.+.-..+-++..+.-+. ...
T Consensus 862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l-~~~ 940 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLL-TES 940 (1030)
T ss_pred HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHH-Hhc
Confidence 457889999999999822 2333332 166677776533 3455543 3334445566666666555 444
Q ss_pred CchHHhhhchHHHHHHHhhcCCC---hhHHHHHHHHHHHHHHHhcCCcccccc
Q psy6156 82 KGPVELFLPNIMPALLQAYENQD---SCVRKCSVFCMVALYKEFGESVLSPYI 131 (176)
Q Consensus 82 ~d~l~~~L~~iiP~l~~a~~~~~---s~VRKaaVfClVal~~~lGe~~l~P~L 131 (176)
..-+..+++.++|.+..--.+.+ -.||-.|..||.++...+.-..+.||=
T Consensus 941 ~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr 993 (1030)
T KOG1967|consen 941 ETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFR 993 (1030)
T ss_pred cccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccccc
Confidence 55667899999999876555544 689999999999999988888788774
No 57
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=90.96 E-value=1.4 Score=40.14 Aligned_cols=57 Identities=12% Similarity=0.032 Sum_probs=39.9
Q ss_pred HHHHHHHHhcChhHHHHHHHHHh-hcChHHHHHhhhhhhhccCcchHHHHHHHHHHHH
Q psy6156 21 IMPALLQAYENQDSCVRKCSVFC-MVALYKVTRILFPLIIAEEHPINLVAIKMLTKVI 77 (176)
Q Consensus 21 iL~~LLd~~~d~e~~VrkAav~~-~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv 77 (176)
..+.|+...+|.+.-||.+++.. ...-......|.+.+++.++.....|++.+.++-
T Consensus 118 a~~~L~~~L~~~~p~vR~aal~al~~r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~ 175 (410)
T TIGR02270 118 AEPWLEPLLAASEPPGRAIGLAALGAHRHDPGPALEAALTHEDALVRAAALRALGELP 175 (410)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChHHHHHHHhcCCCHHHHHHHHHHHHhhc
Confidence 45666777788888888766421 1111236778888888888888888888887663
No 58
>KOG1058|consensus
Probab=90.86 E-value=0.12 Score=50.38 Aligned_cols=44 Identities=27% Similarity=0.489 Sum_probs=38.2
Q ss_pred hhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccc
Q psy6156 87 LFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYIN 132 (176)
Q Consensus 87 ~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~ 132 (176)
+.|..++|.+.++++|..+.|||.|++|+-.+|.. +|. +-|.-+
T Consensus 130 ELlepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~-L~pDap 173 (948)
T KOG1058|consen 130 ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEH-LIPDAP 173 (948)
T ss_pred HHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhh-hcCChH
Confidence 46789999999999999999999999999999988 555 666554
No 59
>KOG0392|consensus
Probab=90.32 E-value=0.93 Score=46.65 Aligned_cols=122 Identities=16% Similarity=0.107 Sum_probs=87.1
Q ss_pred hhchHhhHHHHHHHHhcChhHHHHHHH------HHhhcChH---HHHHhhhhhhhccC-cchHHHHHHHHHHHHhhcCCc
Q psy6156 14 VELFLPNIMPALLQAYENQDSCVRKCS------VFCMVALY---KVTRILFPLIIAEE-HPINLVAIKMLTKVIEQNGKG 83 (176)
Q Consensus 14 ~e~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~p~---~~l~vL~p~l~~~~-~~~~~~aLkmLtklv~~~~~d 83 (176)
+++ +-..+|.++.+-.....++|-|+ ++..-.-+ .|++.+.|.+.+.+ .-...+|.-.+..+. ...--
T Consensus 811 l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~-~~l~~ 888 (1549)
T KOG0392|consen 811 LHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLD-AVLMV 888 (1549)
T ss_pred hhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHH-Hhhcc
Confidence 444 55678888888888888888775 22111111 37777778776553 333344444444444 44555
Q ss_pred hHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHH
Q psy6156 84 PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGA 137 (176)
Q Consensus 84 ~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~ 137 (176)
.+....+=++|.+...|.|...+||-||-.|+..+.-+++.+..-|--..|+.-
T Consensus 889 ~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~e 942 (1549)
T KOG0392|consen 889 GLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKE 942 (1549)
T ss_pred cccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHH
Confidence 567788899999999999999999999999999999999998777777677653
No 60
>KOG1061|consensus
Probab=89.90 E-value=0.88 Score=44.25 Aligned_cols=96 Identities=15% Similarity=0.275 Sum_probs=68.7
Q ss_pred HhhHHHHHHHHhcChhHHHHHH-----HHHhhcChHHHHHhhhhhhhcc---CcchHHHHHHHHHHHHhhcCCchHHhhh
Q psy6156 18 LPNIMPALLQAYENQDSCVRKC-----SVFCMVALYKVTRILFPLIIAE---EHPINLVAIKMLTKVIEQNGKGPVELFL 89 (176)
Q Consensus 18 l~~iL~~LLd~~~d~e~~VrkA-----av~~~v~p~~~l~vL~p~l~~~---~~~~~~~aLkmLtklv~~~~~d~l~~~L 89 (176)
..-+.|.++.+.+-.+-.+.|- .......|+.++.++..++.+. +|-+...|++++..+- +....
T Consensus 47 vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~-------v~~i~ 119 (734)
T KOG1061|consen 47 VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLR-------VDKIT 119 (734)
T ss_pred hHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEe-------ehHHH
Confidence 4445666666665433222221 1344568888888888888655 5666777888887654 56677
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156 90 PNIMPALLQAYENQDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 90 ~~iiP~l~~a~~~~~s~VRKaaVfClVal~~ 120 (176)
..++-.+.++.+|..+.|||+|++|...+|.
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~ 150 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD 150 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhc
Confidence 7888899999999999999999999998874
No 61
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=89.60 E-value=0.89 Score=27.31 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=26.2
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156 91 NIMPALLQAYENQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 91 ~iiP~l~~a~~~~~s~VRKaaVfClVal~ 119 (176)
..+|.|++.+++.+.+|++.|+.++-.|+
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 57999999999999999999999987664
No 62
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=88.98 E-value=1.6 Score=47.11 Aligned_cols=137 Identities=12% Similarity=0.126 Sum_probs=90.2
Q ss_pred hhHHHHHHHHhcChhHHHHHH-H-----HHhhcChHH--------HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCch
Q psy6156 19 PNIMPALLQAYENQDSCVRKC-S-----VFCMVALYK--------VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGP 84 (176)
Q Consensus 19 ~~iL~~LLd~~~d~e~~VrkA-a-----v~~~v~p~~--------~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~ 84 (176)
...+|.+++...+.+.-+++. + ++.....++ +++.|...+.+.+......|+..|..+++.-. .
T Consensus 650 agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e--~ 727 (2102)
T PLN03200 650 DEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE--V 727 (2102)
T ss_pred cCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch--H
Confidence 356788888888776555554 3 222223222 67777778888888888889999999884332 2
Q ss_pred HHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCc-----------cccccccCcHHHHHHHHH--------
Q psy6156 85 VELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESV-----------LSPYINKLSGAKLKLLQL-------- 144 (176)
Q Consensus 85 l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~-----------l~P~L~~L~~~k~kLl~i-------- 144 (176)
..+.. .+.+|.|++-+.+-+.++|+.|+..+..+|.....++ +.|...-|++.-.+-..+
T Consensus 728 ~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~ 807 (2102)
T PLN03200 728 AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALA 807 (2102)
T ss_pred HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 22222 5779999999999999999999999999997766554 234444455444443333
Q ss_pred HHhhhcccCCCCC
Q psy6156 145 YIKRSQTHSSSVP 157 (176)
Q Consensus 145 Yi~R~~~~~~~~~ 157 (176)
|+-|.+.+..-.+
T Consensus 808 ~l~~~~~~~~~~~ 820 (2102)
T PLN03200 808 LLARTKGGANFSH 820 (2102)
T ss_pred HHHhhcccCCCCC
Confidence 6667655544433
No 63
>KOG3961|consensus
Probab=88.62 E-value=1.3 Score=37.59 Aligned_cols=90 Identities=21% Similarity=0.294 Sum_probs=70.7
Q ss_pred cChHH-----HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156 45 VALYK-----VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 45 v~p~~-----~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~ 119 (176)
++|++ .+..+...+..-++|....|-.-++.++.+.+ +-+...||.+|+++..|+.+-.-+|-+.+.+.+.-|.
T Consensus 105 ~~pe~Ldy~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g-~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv 183 (262)
T KOG3961|consen 105 CDPEKLDYCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGG-EKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLV 183 (262)
T ss_pred cCHHhccchHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcc-cccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 55654 45556666666789988888888888885555 8888999999999999999999999998888877666
Q ss_pred HH---hcCCccccccccCcH
Q psy6156 120 KE---FGESVLSPYINKLSG 136 (176)
Q Consensus 120 ~~---lGe~~l~P~L~~L~~ 136 (176)
.. +|.. +.||..+|=+
T Consensus 184 ~~~~~vG~a-LVPfYRQlLp 202 (262)
T KOG3961|consen 184 VSVGCVGAA-LVPFYRQLLP 202 (262)
T ss_pred Hhccccchh-hhhHHHHhhh
Confidence 55 4556 9999876643
No 64
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=88.47 E-value=0.6 Score=26.67 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=17.4
Q ss_pred HHHHHHHHhcChhHHHHHHHHHh
Q psy6156 21 IMPALLQAYENQDSCVRKCSVFC 43 (176)
Q Consensus 21 iL~~LLd~~~d~e~~VrkAav~~ 43 (176)
++|.+++...|...-||++|..+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~ 23 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAEC 23 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHH
Confidence 57888888888888888877553
No 65
>KOG2149|consensus
Probab=88.12 E-value=2.5 Score=38.42 Aligned_cols=96 Identities=19% Similarity=0.215 Sum_probs=76.0
Q ss_pred HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcccc
Q psy6156 50 VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSP 129 (176)
Q Consensus 50 ~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P 129 (176)
.++-|.+.+..-.-....-|+.-+..++.. -++++..++-.+++.+.....|.++.||++.+.-+-.+-...+.+++.|
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 455555555555555666789999999955 7889999999999999999999999999999988887666677776888
Q ss_pred ccccCcHHHHHHHHHHHhhhcccCC
Q psy6156 130 YINKLSGAKLKLLQLYIKRSQTHSS 154 (176)
Q Consensus 130 ~L~~L~~~k~kLl~iYi~R~~~~~~ 154 (176)
|++ ++-.|+.++++..+
T Consensus 138 ~~~--------l~~~yi~~AMThit 154 (393)
T KOG2149|consen 138 MVS--------LLMPYISSAMTHIT 154 (393)
T ss_pred hHH--------HHHHHHHHHHhhcc
Confidence 875 56678888886543
No 66
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=88.04 E-value=11 Score=29.59 Aligned_cols=84 Identities=19% Similarity=0.292 Sum_probs=61.9
Q ss_pred HHHhhhhhhhccC-cchHHHHHHHHHHHHhhcCC------chHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q psy6156 50 VTRILFPLIIAEE-HPINLVAIKMLTKVIEQNGK------GPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEF 122 (176)
Q Consensus 50 ~l~vL~p~l~~~~-~~~~~~aLkmLtklv~~~~~------d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~l 122 (176)
-++.|..+++..+ .+++..++..+++++..... |...+.+|.+++.+.+-.++ +++...+..++-++-..-
T Consensus 68 W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 68 WLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH 145 (165)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence 3456666776654 45677899999999876653 34466788888888887776 688888888888877777
Q ss_pred cCCccccccccCcH
Q psy6156 123 GESVLSPYINKLSG 136 (176)
Q Consensus 123 Ge~~l~P~L~~L~~ 136 (176)
..- ++||-+++..
T Consensus 146 ptt-~rp~~~ki~~ 158 (165)
T PF08167_consen 146 PTT-FRPFANKIES 158 (165)
T ss_pred Ccc-ccchHHHHHH
Confidence 777 9999876654
No 67
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=87.93 E-value=0.78 Score=29.05 Aligned_cols=32 Identities=25% Similarity=0.628 Sum_probs=27.7
Q ss_pred CchhchHhhHHHHHHHHhcChhHHHHHHHHHh
Q psy6156 12 GPVELFLPNIMPALLQAYENQDSCVRKCSVFC 43 (176)
Q Consensus 12 ~~~e~~l~~iL~~LLd~~~d~e~~VrkAav~~ 43 (176)
+.+++++..++|.|+++.+|.++.||.+|...
T Consensus 20 ~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~a 51 (55)
T PF13513_consen 20 ELLQPYLPELLPALIPLLQDDDDSVRAAAAWA 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45788999999999999999988999987653
No 68
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=87.79 E-value=6.1 Score=36.61 Aligned_cols=100 Identities=17% Similarity=0.237 Sum_probs=72.0
Q ss_pred HhhHHHHHHHHhcChhHHHHHHHH-------------HhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCch
Q psy6156 18 LPNIMPALLQAYENQDSCVRKCSV-------------FCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGP 84 (176)
Q Consensus 18 l~~iL~~LLd~~~d~e~~VrkAav-------------~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~ 84 (176)
+..+.+-|..+..+....||.-++ ...+.-..++..+...+.+.+......|++.|.++.+. +..
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~--~~~ 152 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASH--PEG 152 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC--chh
Confidence 566777777777777777776431 11223344777777778888888888999999999953 344
Q ss_pred HHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156 85 VELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 85 l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~ 119 (176)
+...+ +.+.+.|.+.+...++.||--+.-++|.+.
T Consensus 153 ~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~ 188 (503)
T PF10508_consen 153 LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIA 188 (503)
T ss_pred HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 44443 355889999999989999998888888774
No 69
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=87.57 E-value=6 Score=33.85 Aligned_cols=99 Identities=17% Similarity=0.239 Sum_probs=72.5
Q ss_pred HHHH-hhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcc
Q psy6156 49 KVTR-ILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVL 127 (176)
Q Consensus 49 ~~l~-vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l 127 (176)
.++. .+.|.+++.+..+...|+++|.-.. -++++.- .+.+|-+.+++.....+||-.|..+++++...-|-+-+
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~-Lld~~~a----~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCC-LLDKELA----KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HhChHHH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4554 4448899998899999999999987 5555433 45566666677666999999999999999999998833
Q ss_pred ccccc-cCcHHHHHHHHHHHhhhccc
Q psy6156 128 SPYIN-KLSGAKLKLLQLYIKRSQTH 152 (176)
Q Consensus 128 ~P~L~-~L~~~k~kLl~iYi~R~~~~ 152 (176)
...-. .=+.....+++++.+--...
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~ 126 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSE 126 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcC
Confidence 33322 12345667788887776655
No 70
>PTZ00429 beta-adaptin; Provisional
Probab=86.87 E-value=4.1 Score=39.97 Aligned_cols=108 Identities=15% Similarity=0.140 Sum_probs=67.4
Q ss_pred CCCchhchHhhHHHHHHHHhcChhHHHHHHHHHhhcC-----hH-----HHHHhhhhhhhccCcchHHHHHHHHHHHHhh
Q psy6156 10 GKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVA-----LY-----KVTRILFPLIIAEEHPINLVAIKMLTKVIEQ 79 (176)
Q Consensus 10 ~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAav~~~v~-----p~-----~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~ 79 (176)
++-.....++.+++.+.++..|...-|||+|.++... |+ ..+..|...+++.+.-....|+.+|.++.+.
T Consensus 130 s~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 130 MCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 3344566788899999999999999999988665433 32 1344555555555555555555555555432
Q ss_pred cC------------------------------------CchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy6156 80 NG------------------------------------KGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVAL 118 (176)
Q Consensus 80 ~~------------------------------------~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal 118 (176)
.+ +++ ....-+++..+...+.|.++.|-=+|+.|+..+
T Consensus 210 ~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~-~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l 283 (746)
T PTZ00429 210 GSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSD-KESAETLLTRVLPRMSHQNPAVVMGAIKVVANL 283 (746)
T ss_pred CchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 11 100 111235666777778888887777777777654
No 71
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=86.75 E-value=5.6 Score=31.35 Aligned_cols=95 Identities=17% Similarity=0.199 Sum_probs=70.7
Q ss_pred hHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcC-CChhHHHHHHHHHHHHHHHhcCC
Q psy6156 47 LYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYEN-QDSCVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 47 p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~-~~s~VRKaaVfClVal~~~lGe~ 125 (176)
.+.....+...+++++...+-.++.++..+++..+.|-+.++-...+..+..-... ....+.++++.|+..++..++..
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34455667778888888888899999999998888888878888888877766664 45678999999999999887763
Q ss_pred -c-----cccccccCcHHHHHH
Q psy6156 126 -V-----LSPYINKLSGAKLKL 141 (176)
Q Consensus 126 -~-----l~P~L~~L~~~k~kL 141 (176)
+ ..|+++.+-++=.+|
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l 124 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQL 124 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHH
Confidence 3 355555443333333
No 72
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=86.73 E-value=16 Score=31.87 Aligned_cols=110 Identities=12% Similarity=0.070 Sum_probs=71.9
Q ss_pred chHhhHHHHHHHHhcChhHHHHHHHH-------HhhcChHHH-------HHhhhhhhhccCcchHHHHHHHHHHHHhhcC
Q psy6156 16 LFLPNIMPALLQAYENQDSCVRKCSV-------FCMVALYKV-------TRILFPLIIAEEHPINLVAIKMLTKVIEQNG 81 (176)
Q Consensus 16 ~~l~~iL~~LLd~~~d~e~~VrkAav-------~~~v~p~~~-------l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~ 81 (176)
..++.-|...|+...|+....|++++ ...+.++.+ +..+.-.+..++-.-...|++.+.-++=.++
T Consensus 39 ~~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg 118 (309)
T PF05004_consen 39 EDLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLG 118 (309)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcC
Confidence 45555677777888888788888762 122334433 2222223444443445568888888865665
Q ss_pred -CchHHhhhchHHHHHHHhhcCCCh--hHHHHHHHHHHHHHHHhcCC
Q psy6156 82 -KGPVELFLPNIMPALLQAYENQDS--CVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 82 -~d~l~~~L~~iiP~l~~a~~~~~s--~VRKaaVfClVal~~~lGe~ 125 (176)
-+.......++.|.|.+.+.|.+. .+|-++..||--++++.|++
T Consensus 119 ~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d 165 (309)
T PF05004_consen 119 AGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSD 165 (309)
T ss_pred CCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCC
Confidence 455677889999999999887765 46667777887777777765
No 73
>KOG2933|consensus
Probab=86.48 E-value=2.5 Score=37.57 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=84.8
Q ss_pred hhchHhhHHHHHHHHhcChhHHHHHHH------HHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHh
Q psy6156 14 VELFLPNIMPALLQAYENQDSCVRKCS------VFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVEL 87 (176)
Q Consensus 14 ~e~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~ 87 (176)
+.+-++.++.-|+....+.+..||+++ ....+.|...++-|.|+++.....+..-+-.+....+.+++...+..
T Consensus 164 i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~ 243 (334)
T KOG2933|consen 164 IDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLL 243 (334)
T ss_pred HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhh
Confidence 445777888888888887777787764 44457889999999999988888777778888888888888666644
Q ss_pred h-hchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q psy6156 88 F-LPNIMPALLQAYENQDSCVRKCSVFCMVALYKEF 122 (176)
Q Consensus 88 ~-L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~l 122 (176)
. ..+..+.+-+-..|.=+++|++|-|-.-..-.++
T Consensus 244 ~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~~~~v~ 279 (334)
T KOG2933|consen 244 QGSCDLSRAAQEQGSDKLPELREAARFVRLELKEVL 279 (334)
T ss_pred HhHHHHHHHHHhhhcccccccccchhHHHHhHHHHH
Confidence 3 3477888888889999999999988776554443
No 74
>KOG1058|consensus
Probab=86.24 E-value=6.6 Score=38.86 Aligned_cols=132 Identities=20% Similarity=0.343 Sum_probs=81.1
Q ss_pred hchHhhHHHHHHHHhcChhHHHHHHHHHhhcChHHHHHhhhh--------hhhccCcchHH-------------HHHHHH
Q psy6156 15 ELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTRILFP--------LIIAEEHPINL-------------VAIKML 73 (176)
Q Consensus 15 e~~l~~iL~~LLd~~~d~e~~VrkAav~~~v~p~~~l~vL~p--------~l~~~~~~~~~-------------~aLkmL 73 (176)
.+.+++++|.+.+|+.|...-||+=|+++.+..++.+.-|.| ++.+...|... -|++.+
T Consensus 129 ~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl 208 (948)
T KOG1058|consen 129 PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYL 208 (948)
T ss_pred HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHH
Confidence 357899999999999999999999988888888877666665 23333333221 366666
Q ss_pred HHHHhhcCC--chHHhhh---------------chHHHHHHHhhcCCChhHH-----------------HHHHHHHHHHH
Q psy6156 74 TKVIEQNGK--GPVELFL---------------PNIMPALLQAYENQDSCVR-----------------KCSVFCMVALY 119 (176)
Q Consensus 74 tklv~~~~~--d~l~~~L---------------~~iiP~l~~a~~~~~s~VR-----------------KaaVfClVal~ 119 (176)
...+..++. +.+.... ...|-++..-...++|+|+ |+|..|..++-
T Consensus 209 ~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~ 288 (948)
T KOG1058|consen 209 LSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLL 288 (948)
T ss_pred HhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHH
Confidence 666655552 2221111 2344455556666666665 78888888777
Q ss_pred HHhcCCccc----cccccCcHHHHHHHHHHH
Q psy6156 120 KEFGESVLS----PYINKLSGAKLKLLQLYI 146 (176)
Q Consensus 120 ~~lGe~~l~----P~L~~L~~~k~kLl~iYi 146 (176)
-...+..++ -.|..|++...+.++-|+
T Consensus 289 ~kesdnnvklIvldrl~~l~~~~~~il~~l~ 319 (948)
T KOG1058|consen 289 VKESDNNVKLIVLDRLSELKALHEKILQGLI 319 (948)
T ss_pred HhccCcchhhhhHHHHHHHhhhhHHHHHHHH
Confidence 666554332 122444544455444443
No 75
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=86.16 E-value=11 Score=32.94 Aligned_cols=113 Identities=14% Similarity=0.172 Sum_probs=79.1
Q ss_pred CchhchHhhHHHHHHHHhcChhH--HHHHHH--------HHhhcChHH---HHHhhhhh-----hhcc-C---------c
Q psy6156 12 GPVELFLPNIMPALLQAYENQDS--CVRKCS--------VFCMVALYK---VTRILFPL-----IIAE-E---------H 63 (176)
Q Consensus 12 ~~~e~~l~~iL~~LLd~~~d~e~--~VrkAa--------v~~~v~p~~---~l~vL~p~-----l~~~-~---------~ 63 (176)
+..+..++.+.|-|.....|... .+|.++ +++.-.++. +++.+.-+ .+.+ + .
T Consensus 121 ~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 121 EDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred ccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCcc
Confidence 44678888888888888887642 344332 222233332 23444422 2222 1 2
Q ss_pred chHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcC
Q psy6156 64 PINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGE 124 (176)
Q Consensus 64 ~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe 124 (176)
+...+||..-+=++...+...+...+...+|.|..-.++...+||.||=.++.-+|-...+
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 4566789998888878887778888899999999999999999999999999888766664
No 76
>KOG1248|consensus
Probab=85.11 E-value=7.5 Score=39.82 Aligned_cols=138 Identities=13% Similarity=0.187 Sum_probs=90.9
Q ss_pred HHHHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHHHHhh---c----------Ch-HHHHHhhhhhhhcc---CcchH
Q psy6156 4 KVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCM---V----------AL-YKVTRILFPLIIAE---EHPIN 66 (176)
Q Consensus 4 ~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAav~~~---v----------~p-~~~l~vL~p~l~~~---~~~~~ 66 (176)
-+++-++.+ ...++.-.+|-++=.++|-+..-|+-++.|. . .| ...++-..+.|..+ +-+..
T Consensus 723 ~L~~~~~~e-~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~ 801 (1176)
T KOG1248|consen 723 RLLKLLSAE-HCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRV 801 (1176)
T ss_pred HHHHhccHH-HHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHH
Confidence 345555544 5566777777777778776655555442221 1 11 22333333333322 33444
Q ss_pred HHH-HHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHH
Q psy6156 67 LVA-IKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLL 142 (176)
Q Consensus 67 ~~a-LkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl 142 (176)
.++ |=+++.++.......=...+..++--+.-.....+.++||+||--+-.++..+.++-+.||++.|=++=.+|.
T Consensus 802 ~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls 878 (1176)
T KOG1248|consen 802 VASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALS 878 (1176)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHH
Confidence 444 7777777655444444556788888888889999999999999999999999999999999988777665553
No 77
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=84.61 E-value=11 Score=33.38 Aligned_cols=101 Identities=13% Similarity=0.287 Sum_probs=66.5
Q ss_pred HHHHHhcChhHHHHHHHHHhh---cChHHHHHhhhhhhhcc-------CcchHHHHHHHHHHHHhhcCCchHHhhhchHH
Q psy6156 24 ALLQAYENQDSCVRKCSVFCM---VALYKVTRILFPLIIAE-------EHPINLVAIKMLTKVIEQNGKGPVELFLPNIM 93 (176)
Q Consensus 24 ~LLd~~~d~e~~VrkAav~~~---v~p~~~l~vL~p~l~~~-------~~~~~~~aLkmLtklv~~~~~d~l~~~L~~ii 93 (176)
++.++..+..+..|++++-.+ -..+.+++.+..+|..+ ++......++|...++ ..+.=.+...|-.+|
T Consensus 182 ~It~a~~~~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl-~N~~l~le~Ylh~Li 260 (343)
T cd08050 182 EITEALVGSNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALL-DNPNLHLEPYLHQLI 260 (343)
T ss_pred HHHHHHhCCCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHh-cCCCCchHHhHHHHH
Confidence 444444445566666554431 12233444444444322 4666666778888887 445556777888888
Q ss_pred HHHHHhh----------cCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156 94 PALLQAY----------ENQDSCVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 94 P~l~~a~----------~~~~s~VRKaaVfClVal~~~lGe~ 125 (176)
|.+..+. .+.....|.-|-.+|..+|..+|+.
T Consensus 261 p~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~ 302 (343)
T cd08050 261 PSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTS 302 (343)
T ss_pred HHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCC
Confidence 8887776 3455799999999999999999987
No 78
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=84.52 E-value=6.9 Score=33.39 Aligned_cols=102 Identities=22% Similarity=0.320 Sum_probs=69.1
Q ss_pred hHHHHHHHHhcChhHHHHHHH--HHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHH
Q psy6156 20 NIMPALLQAYENQDSCVRKCS--VFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALL 97 (176)
Q Consensus 20 ~iL~~LLd~~~d~e~~VrkAa--v~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~ 97 (176)
.....+++.+.|.+..+|..+ ......-...++.|...+.+.+++....|..+|.++- .+.-+|.++
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~-----------~~~a~~~li 111 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSEEAVPLLRELLSDEDPRVRDAAADALGELG-----------DPEAVPPLV 111 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchHHHHHHHHHHhcCCCHHHHHHHHHHHHccC-----------ChhHHHHHH
Confidence 567788888888877777765 3445566678888888888888876766766444332 245567777
Q ss_pred Hhhc-CCChhHHHHHHHHHHHHHHHhcCCc-cccccccCcH
Q psy6156 98 QAYE-NQDSCVRKCSVFCMVALYKEFGESV-LSPYINKLSG 136 (176)
Q Consensus 98 ~a~~-~~~s~VRKaaVfClVal~~~lGe~~-l~P~L~~L~~ 136 (176)
..+. |.+..||.++.+.+-.+ |+++ +.|.+..|+.
T Consensus 112 ~~l~~d~~~~vR~~aa~aL~~~----~~~~a~~~l~~~l~~ 148 (335)
T COG1413 112 ELLENDENEGVRAAAARALGKL----GDERALDPLLEALQD 148 (335)
T ss_pred HHHHcCCcHhHHHHHHHHHHhc----CchhhhHHHHHHhcc
Confidence 7777 79999999888877543 3332 4444444443
No 79
>KOG2032|consensus
Probab=84.35 E-value=19 Score=33.97 Aligned_cols=121 Identities=21% Similarity=0.170 Sum_probs=87.6
Q ss_pred HHHHHhCCCchh--chHhhHHHHHHHHhcChhHHHHHHH-----HHhhcChHHHHHhhhh-------hh-hccCcchHHH
Q psy6156 4 KVIEQNGKGPVE--LFLPNIMPALLQAYENQDSCVRKCS-----VFCMVALYKVTRILFP-------LI-IAEEHPINLV 68 (176)
Q Consensus 4 ~~~e~~~~~~~e--~~l~~iL~~LLd~~~d~e~~VrkAa-----v~~~v~p~~~l~vL~p-------~l-~~~~~~~~~~ 68 (176)
.+.|..++..+. +.+..++.-+.....|....+|.-+ .....+|++|...-.. .+ ...+.+.-+-
T Consensus 240 f~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~le 319 (533)
T KOG2032|consen 240 FFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLE 319 (533)
T ss_pred HHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHH
Confidence 455555555455 5677777778888888776666533 1223467765442222 22 2234677778
Q ss_pred HHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcC
Q psy6156 69 AIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGE 124 (176)
Q Consensus 69 aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe 124 (176)
|+++|+.+.+...-+.++..+-++.=-+..-+++..+++|-||.+-+-++-..-|.
T Consensus 320 am~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~ 375 (533)
T KOG2032|consen 320 AMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGG 375 (533)
T ss_pred HHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCC
Confidence 99999999999999999999999988999999999999999999988877665554
No 80
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=84.19 E-value=3.1 Score=33.49 Aligned_cols=78 Identities=17% Similarity=0.220 Sum_probs=58.9
Q ss_pred HHHHHHHHhcChhHHHHHHHH--H------hhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchH
Q psy6156 21 IMPALLQAYENQDSCVRKCSV--F------CMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNI 92 (176)
Q Consensus 21 iL~~LLd~~~d~e~~VrkAav--~------~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~i 92 (176)
.++.+++++-+.+..||.+|+ + -.++|-.|++.|.....+.+..+...|.++++.+.++.+ +-+ -..+
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~-s~v---~~~~ 84 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE-SLV---ESRY 84 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH-HHH---HHHH
Confidence 567788888899999998872 1 148999999999999988888888999999999986642 112 2345
Q ss_pred HHHHHHhhcC
Q psy6156 93 MPALLQAYEN 102 (176)
Q Consensus 93 iP~l~~a~~~ 102 (176)
.-|+..||+-
T Consensus 85 ~~gi~~af~~ 94 (187)
T PF12830_consen 85 SEGIRLAFDY 94 (187)
T ss_pred HHHHHHHHHH
Confidence 5566666653
No 81
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=83.17 E-value=3.3 Score=30.61 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=48.3
Q ss_pred hHHHHHhhhhhhhccC----cchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHH
Q psy6156 47 LYKVTRILFPLIIAEE----HPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCM 115 (176)
Q Consensus 47 p~~~l~vL~p~l~~~~----~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfCl 115 (176)
...++..+...++... ......+|+++...++-.+.+.+.+ ..+++.+.+.+++++ .|.+|+.|+
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~--~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN--SNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS--SSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc--HHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 4557777777775543 4556689999999998766666654 669999999995544 499999996
No 82
>KOG0166|consensus
Probab=82.91 E-value=3.5 Score=38.81 Aligned_cols=105 Identities=13% Similarity=0.267 Sum_probs=75.4
Q ss_pred hhchHh-hHHHHHHHHhcChhHHHHHHHHHhh-------------cChHHHHHhhhhhhh-ccCcchHHHHHHHHHHHHh
Q psy6156 14 VELFLP-NIMPALLQAYENQDSCVRKCSVFCM-------------VALYKVTRILFPLII-AEEHPINLVAIKMLTKVIE 78 (176)
Q Consensus 14 ~e~~l~-~iL~~LLd~~~d~e~~VrkAav~~~-------------v~p~~~l~vL~p~l~-~~~~~~~~~aLkmLtklv~ 78 (176)
++-.++ -+.|.|++..++.+..|+-.++=.. +=-...+++|..++. +.+..++..|.-.+..+.
T Consensus 272 iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNIt- 350 (514)
T KOG0166|consen 272 IQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNIT- 350 (514)
T ss_pred HHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhh-
Confidence 444444 4788888988887654443321110 111126677777776 445557788889999988
Q ss_pred hcCCchHHhhhc-hHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156 79 QNGKGPVELFLP-NIMPALLQAYENQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 79 ~~~~d~l~~~L~-~iiP~l~~a~~~~~s~VRKaaVfClVal~ 119 (176)
...++++...++ .++|.|+..+...+=..||.|.+.+-.++
T Consensus 351 AG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 351 AGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLT 392 (514)
T ss_pred cCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhc
Confidence 688889988885 99999999999999999999999876543
No 83
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=82.55 E-value=13 Score=33.08 Aligned_cols=83 Identities=14% Similarity=0.176 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCc-c----ccccccCcHHHHHHH
Q psy6156 68 VAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESV-L----SPYINKLSGAKLKLL 142 (176)
Q Consensus 68 ~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~-l----~P~L~~L~~~k~kLl 142 (176)
.+|..+.+++ ...++.+..+.+.-+|.+...+-|....+|-.|.-++..+...+|.+. + ..-++.-...+ +++
T Consensus 153 erL~i~~~ll-~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~-~~~ 230 (372)
T PF12231_consen 153 ERLNIYKRLL-SQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG-KLI 230 (372)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc-cHH
Confidence 5788899999 667788888999999999999999999999999999999999998641 1 12223223333 889
Q ss_pred HHHHhhhccc
Q psy6156 143 QLYIKRSQTH 152 (176)
Q Consensus 143 ~iYi~R~~~~ 152 (176)
+.|.+|.+.=
T Consensus 231 ~~~~~~L~~m 240 (372)
T PF12231_consen 231 QLYCERLKEM 240 (372)
T ss_pred HHHHHHHHHH
Confidence 9998887543
No 84
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=82.36 E-value=4.8 Score=34.96 Aligned_cols=85 Identities=14% Similarity=0.129 Sum_probs=64.0
Q ss_pred HHHHHhhhhhhhc-cCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCc
Q psy6156 48 YKVTRILFPLIIA-EEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESV 126 (176)
Q Consensus 48 ~~~l~vL~p~l~~-~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~ 126 (176)
..+...|.|++.. ..+.+....++++.......+. +.-++++..+.++|.|.++.|||+-..|+-+.....++.+
T Consensus 21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~----~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~ 96 (339)
T PF12074_consen 21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSS----ELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSD 96 (339)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCc----CCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCch
Confidence 4588889999865 4677888889999888766511 1235788889999999999999999999998887555555
Q ss_pred cccccccCcH
Q psy6156 127 LSPYINKLSG 136 (176)
Q Consensus 127 l~P~L~~L~~ 136 (176)
..+++..+-+
T Consensus 97 ~~~~~~~~~~ 106 (339)
T PF12074_consen 97 SLKFAEPFLP 106 (339)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 85
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=81.87 E-value=13 Score=31.66 Aligned_cols=61 Identities=18% Similarity=0.213 Sum_probs=44.6
Q ss_pred hhHHHHHHHHhcChhHHHHHHHHHh--hcChHHHHHhhhhhhh-ccCcchHHHHHHHHHHHHhh
Q psy6156 19 PNIMPALLQAYENQDSCVRKCSVFC--MVALYKVTRILFPLII-AEEHPINLVAIKMLTKVIEQ 79 (176)
Q Consensus 19 ~~iL~~LLd~~~d~e~~VrkAav~~--~v~p~~~l~vL~p~l~-~~~~~~~~~aLkmLtklv~~ 79 (176)
+..+|.+.+...|.+..||..++.. .+........|...++ +.++.+...+...|.++-..
T Consensus 73 ~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~ 136 (335)
T COG1413 73 EEAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLENDENEGVRAAAARALGKLGDE 136 (335)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch
Confidence 4578888888888888888877543 3455667788888887 47777887777777776433
No 86
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=81.78 E-value=9.5 Score=32.60 Aligned_cols=126 Identities=17% Similarity=0.272 Sum_probs=77.0
Q ss_pred HhCCCchhchHhhHHHHHHHHhcChhHHHHHHH------HHhhcChHH------------HHHhhhhhhh--------cc
Q psy6156 8 QNGKGPVELFLPNIMPALLQAYENQDSCVRKCS------VFCMVALYK------------VTRILFPLII--------AE 61 (176)
Q Consensus 8 ~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~p~~------------~l~vL~p~l~--------~~ 61 (176)
+.+...++.++..++|.+|-..+|.+..++.-. ++..+++.. ..+.|.|.+. +.
T Consensus 107 ~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~ 186 (282)
T PF10521_consen 107 QLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDE 186 (282)
T ss_pred cCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchh
Confidence 667777899999999999999999754444332 222233222 2234555443 33
Q ss_pred CcchHHHHHHHHHHHHhhc---CCchHHhhhchHH-HHHHHhhcCC----ChhHHHHHHHHHHHHHHHhcCCcccccccc
Q psy6156 62 EHPINLVAIKMLTKVIEQN---GKGPVELFLPNIM-PALLQAYENQ----DSCVRKCSVFCMVALYKEFGESVLSPYINK 133 (176)
Q Consensus 62 ~~~~~~~aLkmLtklv~~~---~~d~l~~~L~~ii-P~l~~a~~~~----~s~VRKaaVfClVal~~~lGe~~l~P~L~~ 133 (176)
..+....|...+.+++... +...=...+.+++ -++...|.+. ...+|.+-...+-.+...+|-. ...||+.
T Consensus 187 s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~-~~~hL~r 265 (282)
T PF10521_consen 187 SLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGIS-SVKHLQR 265 (282)
T ss_pred hHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccH-HHHHHHH
Confidence 3455556777777765431 1222222333333 3355555544 3688888888899999999988 7778765
Q ss_pred C
Q psy6156 134 L 134 (176)
Q Consensus 134 L 134 (176)
+
T Consensus 266 i 266 (282)
T PF10521_consen 266 I 266 (282)
T ss_pred H
Confidence 4
No 87
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=81.64 E-value=11 Score=29.71 Aligned_cols=71 Identities=13% Similarity=0.220 Sum_probs=51.1
Q ss_pred HHHhhhhhhhccCcchHH-HHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156 50 VTRILFPLIIAEEHPINL-VAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKE 121 (176)
Q Consensus 50 ~l~vL~p~l~~~~~~~~~-~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~ 121 (176)
+++.|.-++++.-..... .++..+..+++..+..- -..|+.++|.+...+.+..+..|.....-|..+...
T Consensus 87 vi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 87 VINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 566666666655333332 47777788887777776 789999999999999998888888655555555443
No 88
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=81.57 E-value=2.7 Score=36.00 Aligned_cols=65 Identities=14% Similarity=0.144 Sum_probs=52.9
Q ss_pred CcchHHH-HHHHHHHHHh-hcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCc
Q psy6156 62 EHPINLV-AIKMLTKVIE-QNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESV 126 (176)
Q Consensus 62 ~~~~~~~-aLkmLtklv~-~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~ 126 (176)
.|+.+-+ +.-.+.-++. +.+...+..+++-++|++....||.++++|--++.|+-.+...++..+
T Consensus 88 ~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~ 154 (282)
T PF10521_consen 88 PWKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE 154 (282)
T ss_pred CcccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh
Confidence 5665543 2134444454 889999999999999999999999999999999999999998777665
No 89
>KOG1241|consensus
Probab=81.48 E-value=4.8 Score=39.63 Aligned_cols=128 Identities=16% Similarity=0.270 Sum_probs=93.3
Q ss_pred hhHHHHHhCCCchhchHhhHHHHHHHHhcChh-HHHHHHH---HHh---hcCh--HHHHHhhhhhh-----hccCcchHH
Q psy6156 2 LTKVIEQNGKGPVELFLPNIMPALLQAYENQD-SCVRKCS---VFC---MVAL--YKVTRILFPLI-----IAEEHPINL 67 (176)
Q Consensus 2 ~t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e-~~VrkAa---v~~---~v~p--~~~l~vL~p~l-----~~~~~~~~~ 67 (176)
+.-++.+.+++ +.+.-+.++..+++-+.-++ ..|++-+ +.+ .+.+ .+-.+.+.|++ +..++|...
T Consensus 579 Lq~i~rk~~~~-~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~ 657 (859)
T KOG1241|consen 579 LQSIIRKVGSD-IREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCA 657 (859)
T ss_pred HHHHHHHcccc-chhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 45567777875 77888888888888887643 3334322 222 2222 13445566654 556899999
Q ss_pred HHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCC--hhHHHHHHHHHHHHHHHhcCCccccccc
Q psy6156 68 VAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQD--SCVRKCSVFCMVALYKEFGESVLSPYIN 132 (176)
Q Consensus 68 ~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~--s~VRKaaVfClVal~~~lGe~~l~P~L~ 132 (176)
+|+-+.+.+.+.+ .+.+.+.-+++|-.|++...++. -+|.=+..-|.=++-..+|++ +.||+.
T Consensus 658 ~aVglVgdl~raL-~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~-F~~Yl~ 722 (859)
T KOG1241|consen 658 AAVGLVGDLARAL-EDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGAD-FEPYLE 722 (859)
T ss_pred HHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHh-HHHHHH
Confidence 9999999999444 45567888999999999988654 467778888999999999999 999985
No 90
>KOG1824|consensus
Probab=81.35 E-value=6.8 Score=39.70 Aligned_cols=119 Identities=15% Similarity=0.210 Sum_probs=84.5
Q ss_pred hHHHHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHH-----HHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHH
Q psy6156 3 TKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS-----VFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVI 77 (176)
Q Consensus 3 t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAa-----v~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv 77 (176)
-+++-+.+-+.+-++.+.|.--|.......|+-.|.-. ..+.+.|+..+.-|.-.+.++..-+...++-...-.+
T Consensus 915 kevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsi 994 (1233)
T KOG1824|consen 915 KEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSI 994 (1233)
T ss_pred HHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeee
Confidence 45666667777778888888888777777765555421 4557899999999988887765544444444333344
Q ss_pred hhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156 78 EQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 78 ~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~ 125 (176)
.-.+..+...+...|--+..++.|+..+||..|+ |++-...-|.
T Consensus 995 -sd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaL---vv~nSaahNK 1038 (1233)
T KOG1824|consen 995 -SDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVAL---VVLNSAAHNK 1038 (1233)
T ss_pred -cCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHH---HHHHHHHccC
Confidence 5567778888999999999999999999999775 4444444443
No 91
>KOG0213|consensus
Probab=80.22 E-value=8.1 Score=38.45 Aligned_cols=94 Identities=16% Similarity=0.203 Sum_probs=70.6
Q ss_pred ChhHHHHHHH------HHhhcChHHHHHhhhhhhhcc-CcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCC
Q psy6156 31 NQDSCVRKCS------VFCMVALYKVTRILFPLIIAE-EHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQ 103 (176)
Q Consensus 31 d~e~~VrkAa------v~~~v~p~~~l~vL~p~l~~~-~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~ 103 (176)
+.++-||.-. ++..+-...+++.|...-.+. .|+.....||+.+++..-++- .+.++|..++.++..+..|.
T Consensus 487 n~deYVRnttarafavvasalgip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gc-svlphl~~lv~ii~~gl~De 565 (1172)
T KOG0213|consen 487 NKDEYVRNTTARAFAVVASALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGC-SVLPHLKPLVKIIEHGLKDE 565 (1172)
T ss_pred cccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcc-hhhhhhHHHHHHHHHhhccc
Confidence 3467787742 444444455555555555555 699999999999999844444 46789999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhcCC
Q psy6156 104 DSCVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 104 ~s~VRKaaVfClVal~~~lGe~ 125 (176)
+--||--+-.||-++.-..|.-
T Consensus 566 ~qkVR~itAlalsalaeaa~Py 587 (1172)
T KOG0213|consen 566 QQKVRTITALALSALAEAATPY 587 (1172)
T ss_pred chhhhhHHHHHHHHHHHhcCCc
Confidence 9999998888888877665543
No 92
>KOG1241|consensus
Probab=79.72 E-value=8.1 Score=38.11 Aligned_cols=76 Identities=9% Similarity=0.142 Sum_probs=67.1
Q ss_pred HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156 50 VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 50 ~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~ 125 (176)
+++.+...|++.+|.-.-+|.=.+..+.+.-.++.+....++-+|+++..|.|++--||.++-+|+-.++-.+.+.
T Consensus 365 Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~ 440 (859)
T KOG1241|consen 365 VLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEA 440 (859)
T ss_pred hHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhh
Confidence 4455555667889999999999999999899999999999999999999999999999999999999998777654
No 93
>KOG2759|consensus
Probab=78.72 E-value=5.4 Score=36.74 Aligned_cols=70 Identities=20% Similarity=0.287 Sum_probs=48.5
Q ss_pred HHHHHhhhhhhhccCcchHH-HHHHHHHHHHhhcCCchH-HhhhchHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy6156 48 YKVTRILFPLIIAEEHPINL-VAIKMLTKVIEQNGKGPV-ELFLPNIMPALLQAYENQDSCVRKCSVFCMVAL 118 (176)
Q Consensus 48 ~~~l~vL~p~l~~~~~~~~~-~aLkmLtklv~~~~~d~l-~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal 118 (176)
+.++++|..++++++.|+-+ .|..=++.+|+..+..-. -+.++ -=-.+.+-++|..++||..|..|.=.+
T Consensus 365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~g-gKe~vM~Llnh~d~~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 365 YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYG-GKERVMNLLNHEDPEVRYHALLAVQKL 436 (442)
T ss_pred HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhc-hHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 34899999999988766555 588889999955554322 11111 112356789999999999988776443
No 94
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=77.13 E-value=11 Score=28.16 Aligned_cols=74 Identities=19% Similarity=0.235 Sum_probs=45.1
Q ss_pred CcchHHHHHHHHHHHHhhcCCc---hHHhhhchHHHHHH---HhhcCCChhHHHHHHHHHHHHHHHhcCCcccccc----
Q psy6156 62 EHPINLVAIKMLTKVIEQNGKG---PVELFLPNIMPALL---QAYENQDSCVRKCSVFCMVALYKEFGESVLSPYI---- 131 (176)
Q Consensus 62 ~~~~~~~aLkmLtklv~~~~~d---~l~~~L~~iiP~l~---~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L---- 131 (176)
++.....||+...++| +..++ ++..+..+++-.|+ .-|+..+=+..+ ..|||+++..-.+. +.|||
T Consensus 18 ~~e~~e~aL~~a~~LI-R~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R--~~alval~v~~P~~-~~~~L~~~f 93 (114)
T PF10193_consen 18 DYEKFEAALKSAEKLI-RRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELR--QNALVALVVAAPEK-VAPYLTEEF 93 (114)
T ss_dssp --S-SHHHHHHHHHHH-HS-----SSHHHHHHHHHHHHHH---TT--TTTTHHH--HHHHHHHHHHSGGG-HHH-HHHHH
T ss_pred CHHHHHHHHHHHHHHH-hcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHH--HHHHHHHHHHhhHH-HHHHHHHHH
Confidence 5777789999999999 66666 88888777777665 445544333222 47899999888888 99987
Q ss_pred --ccCcHHHH
Q psy6156 132 --NKLSGAKL 139 (176)
Q Consensus 132 --~~L~~~k~ 139 (176)
++++-+|+
T Consensus 94 ~~~~~Sl~qR 103 (114)
T PF10193_consen 94 FSGDYSLQQR 103 (114)
T ss_dssp TTS---THHH
T ss_pred hcCCCCHHHH
Confidence 35555554
No 95
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=77.00 E-value=5.4 Score=35.84 Aligned_cols=48 Identities=17% Similarity=0.365 Sum_probs=36.5
Q ss_pred HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHH
Q psy6156 50 VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQ 98 (176)
Q Consensus 50 ~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~ 98 (176)
.++.|..-++..+.....++|..+..+++. .++.+.++++.++|.+.+
T Consensus 366 LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~-~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 366 LLPLLLQSLSLPDADVLLSSLETLKMILEE-APELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHh
Confidence 344444445555666788999999999955 488999999999999875
No 96
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=76.80 E-value=21 Score=34.66 Aligned_cols=128 Identities=13% Similarity=0.184 Sum_probs=85.0
Q ss_pred hhHHHHHhCCC--chhchHhhHHHHHHHHhcCh---hHHHHHHHHHhhcChH--------HHHHhhhhhhhccCcchHHH
Q psy6156 2 LTKVIEQNGKG--PVELFLPNIMPALLQAYENQ---DSCVRKCSVFCMVALY--------KVTRILFPLIIAEEHPINLV 68 (176)
Q Consensus 2 ~t~~~e~~~~~--~~e~~l~~iL~~LLd~~~d~---e~~VrkAav~~~v~p~--------~~l~vL~p~l~~~~~~~~~~ 68 (176)
++.++.+.++| +.++.+-.++-.+++..+.. +++.- |.-+.+-+.+ ..++.|..-++..+.+..-.
T Consensus 580 l~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~-aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~ 658 (858)
T COG5215 580 LEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYT-AISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNS 658 (858)
T ss_pred HHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHH
Confidence 56778888874 34444444555555555321 22222 1111112222 24444444556778999999
Q ss_pred HHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCC--ChhHHHHHHHHHHHHHHHhcCCccccccc
Q psy6156 69 AIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQ--DSCVRKCSVFCMVALYKEFGESVLSPYIN 132 (176)
Q Consensus 69 aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~--~s~VRKaaVfClVal~~~lGe~~l~P~L~ 132 (176)
|+.+...+.+.++.|- ...-+.+|..|+++..++ .-++.-+..-|.=++-..+|-. +.|||.
T Consensus 659 avglvgdlantl~~df-~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~-F~~YL~ 722 (858)
T COG5215 659 AVGLVGDLANTLGTDF-NIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGAN-FESYLD 722 (858)
T ss_pred HHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhh-HHHHHH
Confidence 9999999998887764 356678899999998754 4567788888999999999998 999985
No 97
>KOG1062|consensus
Probab=75.94 E-value=4.8 Score=39.79 Aligned_cols=39 Identities=15% Similarity=0.396 Sum_probs=35.1
Q ss_pred hhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156 87 LFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 87 ~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~ 125 (176)
+..+++.|-+.+-+.|.++.|||=|+.|++.++.+..+-
T Consensus 138 EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l 176 (866)
T KOG1062|consen 138 EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL 176 (866)
T ss_pred HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH
Confidence 346889999999999999999999999999999988775
No 98
>PF05536 Neurochondrin: Neurochondrin
Probab=75.46 E-value=23 Score=33.42 Aligned_cols=106 Identities=17% Similarity=0.156 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhH-------HHHHHHHHHHHHHHhcCCccccccccCcHH
Q psy6156 65 INLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCV-------RKCSVFCMVALYKEFGESVLSPYINKLSGA 137 (176)
Q Consensus 65 ~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~V-------RKaaVfClVal~~~lGe~~l~P~L~~L~~~ 137 (176)
...+++|.+.... +=.+..+.+..-.++|-+++-+++...+. .-..-|=++++|....+++-+.-+-.. ++
T Consensus 375 ~vlAsvR~L~~WL-aEe~~~lr~~v~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~gr~~l~~~-~g 452 (543)
T PF05536_consen 375 FVLASVRVLGAWL-AEETSALRKEVYGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEEGRKILLSN-GG 452 (543)
T ss_pred HHHHHHHHHHHHH-HhChHHHHHHHHHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHHHHHHHHhC-Cc
Confidence 5668899999988 44455577888899999998888877772 235568999999999999777777664 55
Q ss_pred HHHHHHHHHhhhcccCCCCCCCcch--hhHhhHhhhhc
Q psy6156 138 KLKLLQLYIKRSQTHSSSVPTSLSI--RSLERVCSVLI 173 (176)
Q Consensus 138 k~kLl~iYi~R~~~~~~~~~~~~~~--~~~~~~~~~~~ 173 (176)
-+-|.+-+++..+. .++.+...+. .++.-+|++++
T Consensus 453 ~~~l~~~l~~~~~~-~~~~~~~~~~~~~~l~~~c~ill 489 (543)
T PF05536_consen 453 WKLLCDDLLKILQS-PSGDDDAEDSAEMALVTACGILL 489 (543)
T ss_pred HHHHHHHHHHHHHh-cccCcchhhhhHHHHHHHHHHHH
Confidence 55667755555554 3333333322 27888999875
No 99
>KOG4653|consensus
Probab=75.30 E-value=32 Score=34.63 Aligned_cols=58 Identities=22% Similarity=0.330 Sum_probs=43.3
Q ss_pred hhchHHHHHH-HhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHH
Q psy6156 88 FLPNIMPALL-QAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYI 146 (176)
Q Consensus 88 ~L~~iiP~l~-~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi 146 (176)
.+.++.-++. ...-|-+.-||.|||.=++.+-.-.|++ +.|.+..+.--..+.+.-|+
T Consensus 885 ~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~d-lLpilr~~l~Dl~~tl~~~v 943 (982)
T KOG4653|consen 885 FFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGED-LLPILRLLLIDLDETLLSYV 943 (982)
T ss_pred HHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchh-hHHHHHHHHHHHHHHHHHHH
Confidence 3444444433 4556899999999999999999999977 99988777666666666665
No 100
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=75.22 E-value=13 Score=35.34 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=39.7
Q ss_pred hhchHhhHHHHHHHHhcChhHHHHHHH-----HHhhcCh---HHHHHhhhhhhhccCcchHHHHHHHHHHHH
Q psy6156 14 VELFLPNIMPALLQAYENQDSCVRKCS-----VFCMVAL---YKVTRILFPLIIAEEHPINLVAIKMLTKVI 77 (176)
Q Consensus 14 ~e~~l~~iL~~LLd~~~d~e~~VrkAa-----v~~~v~p---~~~l~vL~p~l~~~~~~~~~~aLkmLtklv 77 (176)
|-.+-+..+-.++|..+|.+..||..| .+|--.| .++..+|..++++++..-...+=+.|..+.
T Consensus 53 FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll 124 (556)
T PF05918_consen 53 FPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLL 124 (556)
T ss_dssp -GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 445556788999999999999999987 2333344 358889999999887655555555554444
No 101
>KOG1240|consensus
Probab=75.02 E-value=7.8 Score=40.10 Aligned_cols=59 Identities=15% Similarity=0.243 Sum_probs=49.0
Q ss_pred cchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcC
Q psy6156 63 HPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGE 124 (176)
Q Consensus 63 ~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe 124 (176)
-.++..||.||.++-..+ -|+. .|+.++|-++-.+.|+.++||-+|+-.+.++-..+.+
T Consensus 437 ~~tK~~ALeLl~~lS~~i-~de~--~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~ 495 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYI-DDEV--KLDRVLPYFVHLLMDSEADVRATALETLTELLALVRD 495 (1431)
T ss_pred chhHHHHHHHHHHHhhhc-chHH--HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccC
Confidence 367889999999998444 4444 7999999999999999999999999998888766543
No 102
>KOG2259|consensus
Probab=73.98 E-value=5.4 Score=38.90 Aligned_cols=81 Identities=20% Similarity=0.234 Sum_probs=60.5
Q ss_pred HHHHhcChhHHHHHHHHHhh--c---C---hHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHH
Q psy6156 25 LLQAYENQDSCVRKCSVFCM--V---A---LYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPAL 96 (176)
Q Consensus 25 LLd~~~d~e~~VrkAav~~~--v---~---p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l 96 (176)
+++.+.|.=--||+|||..+ + . +..++..|..-+++.-.-..+-||+.|+.+..++.- =.+.++.+
T Consensus 378 ~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i------~eeql~~i 451 (823)
T KOG2259|consen 378 LVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAI------REEQLRQI 451 (823)
T ss_pred eeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhee------cHHHHHHH
Confidence 44555555466899985443 1 1 345999999999999888889999999999866332 23667888
Q ss_pred HHhhcCCChhHHHHH
Q psy6156 97 LQAYENQDSCVRKCS 111 (176)
Q Consensus 97 ~~a~~~~~s~VRKaa 111 (176)
..+.+|.+.+||.+.
T Consensus 452 l~~L~D~s~dvRe~l 466 (823)
T KOG2259|consen 452 LESLEDRSVDVREAL 466 (823)
T ss_pred HHHHHhcCHHHHHHH
Confidence 889999999999765
No 103
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=73.77 E-value=28 Score=30.12 Aligned_cols=61 Identities=11% Similarity=0.022 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCC--ChhHHHHHHHHHHHHHHHhcCC
Q psy6156 65 INLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQ--DSCVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 65 ~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~--~s~VRKaaVfClVal~~~lGe~ 125 (176)
...-.++.+..++.........+....+.-.++-..-++ .++||+.|..++-.+|..-++.
T Consensus 178 d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~ 240 (339)
T PF12074_consen 178 DLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL 240 (339)
T ss_pred HHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 345577777777755555444333455666677777777 9999999999999999876653
No 104
>KOG2025|consensus
Probab=73.20 E-value=17 Score=35.93 Aligned_cols=134 Identities=14% Similarity=0.232 Sum_probs=81.8
Q ss_pred hHHHHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHHHHhhcChH--------HHHHhhhhhhhcc-CcchHHHHHHHH
Q psy6156 3 TKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALY--------KVTRILFPLIIAE-EHPINLVAIKML 73 (176)
Q Consensus 3 t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAav~~~v~p~--------~~l~vL~p~l~~~-~~~~~~~aLkmL 73 (176)
..+++.++ +.=+..+..+..+++.+..|.+..||--|+++..-.+ .+.+.+..+++.+ .....-+|+-++
T Consensus 110 a~l~d~~~-eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 110 ALLSDENA-EIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred HHHhcccc-ccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 34444333 3345788899999999999999999998877654222 2777777777544 233334444443
Q ss_pred HH-------HHhhcCCc--h-------------H---HhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccc
Q psy6156 74 TK-------VIEQNGKG--P-------------V---ELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLS 128 (176)
Q Consensus 74 tk-------lv~~~~~d--~-------------l---~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~ 128 (176)
.- +++| ..| . + ..-.+..+--+.++.+|-+-+|++|++.-+..=+....+.++-
T Consensus 189 ~vdnsTlp~IveR-arDV~~anRrlvY~r~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ 267 (892)
T KOG2025|consen 189 SVDNSTLPCIVER-ARDVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSDGNIL 267 (892)
T ss_pred ccCcccchhHHHH-hhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhccccHH
Confidence 21 1111 000 0 0 0011233445678888888888888888888777777776666
Q ss_pred cccccCcHHH
Q psy6156 129 PYINKLSGAK 138 (176)
Q Consensus 129 P~L~~L~~~k 138 (176)
-.|..|+.+.
T Consensus 268 ElL~~ldvsn 277 (892)
T KOG2025|consen 268 ELLERLDVSN 277 (892)
T ss_pred HHHHHhcccc
Confidence 6666665443
No 105
>KOG1020|consensus
Probab=72.48 E-value=11 Score=39.80 Aligned_cols=106 Identities=8% Similarity=0.076 Sum_probs=56.5
Q ss_pred hhchHhhHHHHHHHHhcChhHHHHHHH---HHh--hcChHH-----HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCc
Q psy6156 14 VELFLPNIMPALLQAYENQDSCVRKCS---VFC--MVALYK-----VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKG 83 (176)
Q Consensus 14 ~e~~l~~iL~~LLd~~~d~e~~VrkAa---v~~--~v~p~~-----~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d 83 (176)
+-..|+..+-.|+-..+...-++|.-| +.. .++|.- +...+-.-++++--...-+|+.++.+.| -..
T Consensus 810 f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfv-l~~-- 886 (1692)
T KOG1020|consen 810 FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFV-LSI-- 886 (1692)
T ss_pred HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhh-hcc--
Confidence 445555555555555554445555433 111 123322 1111111234444555566777777766 111
Q ss_pred hHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcC
Q psy6156 84 PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGE 124 (176)
Q Consensus 84 ~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe 124 (176)
.+..++..-.+.+.+.|+.-+|||=|++-+=++|..-.+
T Consensus 887 --~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 887 --PELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred --HHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC
Confidence 123456666777778888888888888877777765443
No 106
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=72.46 E-value=19 Score=34.92 Aligned_cols=80 Identities=15% Similarity=0.226 Sum_probs=69.8
Q ss_pred HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcccc
Q psy6156 50 VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSP 129 (176)
Q Consensus 50 ~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P 129 (176)
++.....-|++.+|.-..+|.-.+..+.+.-..+.+....++.+|++.--|+|+.--|...+-+|+=++-..+.+- +.|
T Consensus 367 Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~-i~p 445 (858)
T COG5215 367 VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMI-ISP 445 (858)
T ss_pred HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHh-cCc
Confidence 4555555678889999999999999999888888999999999999999999999999999999999998888887 666
Q ss_pred c
Q psy6156 130 Y 130 (176)
Q Consensus 130 ~ 130 (176)
-
T Consensus 446 ~ 446 (858)
T COG5215 446 C 446 (858)
T ss_pred c
Confidence 4
No 107
>KOG0211|consensus
Probab=72.36 E-value=28 Score=34.40 Aligned_cols=97 Identities=15% Similarity=0.170 Sum_probs=75.4
Q ss_pred HHhcChhHHHHHHH------HHhhcChHHHHHh----hhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHH
Q psy6156 27 QAYENQDSCVRKCS------VFCMVALYKVTRI----LFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPAL 96 (176)
Q Consensus 27 d~~~d~e~~VrkAa------v~~~v~p~~~l~v----L~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l 96 (176)
+...|....||.|+ ++..+.-+.+... +..+.++++.....+|.+.+..+.+-+..+. +.-..+.|.+
T Consensus 244 ~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l 321 (759)
T KOG0211|consen 244 SLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--DVVKSLTESL 321 (759)
T ss_pred hhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHH
Confidence 44456678888874 3333333444443 3445677788899999999999987777665 6778899999
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156 97 LQAYENQDSCVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 97 ~~a~~~~~s~VRKaaVfClVal~~~lGe~ 125 (176)
.++.+|.++.||-.+-.-.+.++..+|.+
T Consensus 322 ~~~~~d~~~~v~~~~~~~~~~L~~~~~~~ 350 (759)
T KOG0211|consen 322 VQAVEDGSWRVSYMVADKFSELSSAVGPS 350 (759)
T ss_pred HHHhcChhHHHHHHHhhhhhhHHHHhccc
Confidence 99999999999999999999999999995
No 108
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=71.26 E-value=37 Score=29.61 Aligned_cols=109 Identities=16% Similarity=0.291 Sum_probs=70.8
Q ss_pred hchHhhHHHHHHHHhcChhHHHHHHHHHhh-----------cCh------HHHHHhhhhhhhcc--CcchH-HHHHHHHH
Q psy6156 15 ELFLPNIMPALLQAYENQDSCVRKCSVFCM-----------VAL------YKVTRILFPLIIAE--EHPIN-LVAIKMLT 74 (176)
Q Consensus 15 e~~l~~iL~~LLd~~~d~e~~VrkAav~~~-----------v~p------~~~l~vL~p~l~~~--~~~~~-~~aLkmLt 74 (176)
+.++.+++..++.-|.+.....|++-++.. ..+ +.++....+.++.+ ++|.. ..=.++|.
T Consensus 66 ~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~ 145 (319)
T PF08767_consen 66 NNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLR 145 (319)
T ss_dssp HHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHH
Confidence 456666777777788876666666532211 111 12444455556544 45544 45577777
Q ss_pred HHHhhcCCchH----HhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcC
Q psy6156 75 KVIEQNGKGPV----ELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGE 124 (176)
Q Consensus 75 klv~~~~~d~l----~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe 124 (176)
.+++.. .+.+ .+....++-.+.+|+.|+..+|...+..++-++...+.+
T Consensus 146 ~i~~~~-f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 146 AINEHC-FPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHH-THHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-HHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 777543 2323 334678889999999999999999999999998887777
No 109
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=70.92 E-value=39 Score=36.60 Aligned_cols=109 Identities=16% Similarity=0.237 Sum_probs=79.1
Q ss_pred chHhhHHHHHHHHhcChhHHHHHHHH---Hhh-------cChHH---HHH-hhhhhhhc---------------------
Q psy6156 16 LFLPNIMPALLQAYENQDSCVRKCSV---FCM-------VALYK---VTR-ILFPLIIA--------------------- 60 (176)
Q Consensus 16 ~~l~~iL~~LLd~~~d~e~~VrkAav---~~~-------v~p~~---~l~-vL~p~l~~--------------------- 60 (176)
.+.-+++.+|-+...|...-||.-|+ |.. ++|+- |++ +|.|++..
T Consensus 1343 ~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~ 1422 (1780)
T PLN03076 1343 YFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGD 1422 (1780)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccc
Confidence 45668888999999998888998763 222 45542 555 88998522
Q ss_pred ------cCc--chHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156 61 ------EEH--PINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 61 ------~~~--~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~ 125 (176)
+.| .+..-||+.+..++.+. =+.+...|++++--|..+...++-...+.++-|+.-+-...|..
T Consensus 1423 ~~~~e~~~Wl~eT~~~AL~~lvdLft~f-Fd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~ 1494 (1780)
T PLN03076 1423 QGELDQDAWLYETCTLALQLVVDLFVKF-YPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHL 1494 (1780)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhcc
Confidence 114 23334555555554222 26678889999999999999999999999999999998888876
No 110
>KOG2149|consensus
Probab=70.80 E-value=18 Score=32.95 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=59.3
Q ss_pred HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHH
Q psy6156 49 KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCM 115 (176)
Q Consensus 49 ~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfCl 115 (176)
..+.-+.|.+.+.+.....+.++++..++....++.+.++.+-++|.+..||.|-.++||--+..-+
T Consensus 99 ~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~yi~~AMThit~~i~~dslkfL 165 (393)
T KOG2149|consen 99 ALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMPYISSAMTHITPEIQEDSLKFL 165 (393)
T ss_pred HHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHHHHHHHHhhccHHHHHhhHHHH
Confidence 3677778888888999999999999999989999999999999999999999999999998665433
No 111
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=70.74 E-value=14 Score=28.64 Aligned_cols=54 Identities=15% Similarity=0.216 Sum_probs=39.5
Q ss_pred chHHHHHHHHHHHHhhcCCchHHhh--hchHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156 64 PINLVAIKMLTKVIEQNGKGPVELF--LPNIMPALLQAYENQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 64 ~~~~~aLkmLtklv~~~~~d~l~~~--L~~iiP~l~~a~~~~~s~VRKaaVfClVal~ 119 (176)
..-..+++++..+++.- .-+... -++.++.+..++++++..+|+.|...|.++|
T Consensus 131 ~~~~~~l~Clkal~n~~--~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 131 DIEHECLRCLKALMNTK--YGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHTSSH--HHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccH--HHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 34456888887776432 222223 4788999999999999999999999999988
No 112
>KOG2025|consensus
Probab=70.70 E-value=30 Score=34.29 Aligned_cols=118 Identities=13% Similarity=0.134 Sum_probs=74.6
Q ss_pred hhHHHHHhCCCchhchHhhHHHHHHHHhcCh---hHHHHHHH-HHhh---cChH-HHHH----hhhhhhhccCcchHHHH
Q psy6156 2 LTKVIEQNGKGPVELFLPNIMPALLQAYENQ---DSCVRKCS-VFCM---VALY-KVTR----ILFPLIIAEEHPINLVA 69 (176)
Q Consensus 2 ~t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~---e~~VrkAa-v~~~---v~p~-~~l~----vL~p~l~~~~~~~~~~a 69 (176)
+.|+.+....+.+...|.-++..++-.++.. +.+++=++ ++.. .+++ ..+. .|.....+.+-...--+
T Consensus 26 ~~k~~em~t~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrv 105 (892)
T KOG2025|consen 26 LAKVMEMLTAHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRV 105 (892)
T ss_pred HHHHHHhhhHhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHH
Confidence 4577788888888888888888888888853 56666554 3322 2333 2332 22222333344455567
Q ss_pred HHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156 70 IKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 70 LkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~ 120 (176)
+.++.++.... .+.=....+.+.-.+....-|-.+.||-.||+||-.+-.
T Consensus 106 lqila~l~d~~-~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~ 155 (892)
T KOG2025|consen 106 LQILALLSDEN-AEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG 155 (892)
T ss_pred HHHHHHHhccc-cccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc
Confidence 88888887421 111122445666677777889999999999999875543
No 113
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=70.44 E-value=9.3 Score=21.89 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=23.9
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy6156 91 NIMPALLQAYENQDSCVRKCSVFCMVAL 118 (176)
Q Consensus 91 ~iiP~l~~a~~~~~s~VRKaaVfClVal 118 (176)
..+|.|++.+++.+.+++++++.++-.+
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4788899999999999999999987654
No 114
>KOG1020|consensus
Probab=68.97 E-value=45 Score=35.54 Aligned_cols=107 Identities=14% Similarity=0.239 Sum_probs=76.8
Q ss_pred CchhchHhhHHHHHHHHhcChhHHHHHHHH-----HhhcChHHHHH---hhhhhhhccCcchHHHHHHHHHHHHhhcCCc
Q psy6156 12 GPVELFLPNIMPALLQAYENQDSCVRKCSV-----FCMVALYKVTR---ILFPLIIAEEHPINLVAIKMLTKVIEQNGKG 83 (176)
Q Consensus 12 ~~~e~~l~~iL~~LLd~~~d~e~~VrkAav-----~~~v~p~~~l~---vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d 83 (176)
|+..-.-..+..++-..+.|+--.||+||+ +-+..|+.... .+..-|.+..--..--+||.+.++++. .+|
T Consensus 847 Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e-~pd 925 (1692)
T KOG1020|consen 847 DPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEE-TPD 925 (1692)
T ss_pred ChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHh-CCC
Confidence 434444456777888888899999999872 22346666554 334444555555666799999999944 344
Q ss_pred hHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156 84 PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKE 121 (176)
Q Consensus 84 ~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~ 121 (176)
-- ..+++.--+++..+|.+..|.|=+-..+..+++.
T Consensus 926 f~--~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 926 FS--KIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred hh--hHHHHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence 33 5678888889999999999999999998888875
No 115
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=68.84 E-value=20 Score=29.13 Aligned_cols=69 Identities=19% Similarity=0.254 Sum_probs=51.0
Q ss_pred hhhhhhhcc-CcchHHHHHHHHHHHHhhcCCchH-HhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156 53 ILFPLIIAE-EHPINLVAIKMLTKVIEQNGKGPV-ELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKE 121 (176)
Q Consensus 53 vL~p~l~~~-~~~~~~~aLkmLtklv~~~~~d~l-~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~ 121 (176)
.|.-.++.+ ..+.....+|+++-+++.-+-+.+ .+.+++++..+..-..|.+++||=++..|+-++-..
T Consensus 105 ~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 105 GLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 333345555 456677799999999866665555 346678888888888889999999999998876543
No 116
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=68.15 E-value=15 Score=33.76 Aligned_cols=69 Identities=19% Similarity=0.225 Sum_probs=50.2
Q ss_pred HHHHhhhhhhhcc-CcchHHHHHHHHHHHHhhcCCc-hHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy6156 49 KVTRILFPLIIAE-EHPINLVAIKMLTKVIEQNGKG-PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVAL 118 (176)
Q Consensus 49 ~~l~vL~p~l~~~-~~~~~~~aLkmLtklv~~~~~d-~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal 118 (176)
..++.|..++.++ +..+...|+.=+..+++..+.. .+.+.++ .=..+.+-|+|.+++||+.|..|.=.+
T Consensus 353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg-~K~~vM~Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG-GKQRVMRLLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC-cHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4888999999654 4555566888899999776422 2333444 344577899999999999999998655
No 117
>KOG2274|consensus
Probab=68.11 E-value=32 Score=34.73 Aligned_cols=98 Identities=16% Similarity=0.223 Sum_probs=68.5
Q ss_pred HHHHHHHHhcChhHHHHHHH---HHhhcChHHHHHhhhhhhhcc--CcchHHHHHHHHHHHHhhcCCc------------
Q psy6156 21 IMPALLQAYENQDSCVRKCS---VFCMVALYKVTRILFPLIIAE--EHPINLVAIKMLTKVIEQNGKG------------ 83 (176)
Q Consensus 21 iL~~LLd~~~d~e~~VrkAa---v~~~v~p~~~l~vL~p~l~~~--~~~~~~~aLkmLtklv~~~~~d------------ 83 (176)
-+-++|...-+++.-||.+| +-..--++.....|+.+.... .-|..++|+-+|+++++..-.+
T Consensus 5 ~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~~ 84 (1005)
T KOG2274|consen 5 AIIELLSGSLSADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLIVS 84 (1005)
T ss_pred HHHHHHHhhcCCChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCccc
Confidence 34566666677788888876 222234456888999887554 5688999999999998765432
Q ss_pred -hHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156 84 -PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKE 121 (176)
Q Consensus 84 -~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~ 121 (176)
++..+.-+.+|++. ++.++-+|+++-+|...+-..
T Consensus 85 e~~K~~IRe~Ll~~l---~~sn~ki~~~vay~is~Ia~~ 120 (1005)
T KOG2274|consen 85 EEVKALIREQLLNLL---DDSNSKIRSAVAYAISSIAAV 120 (1005)
T ss_pred HHHHHHHHHHHHhhh---hccccccchHHHHHHHHHHhc
Confidence 33444444455544 499999999999999877554
No 118
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=68.02 E-value=35 Score=26.60 Aligned_cols=69 Identities=16% Similarity=0.182 Sum_probs=52.4
Q ss_pred HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhh--chHHHHHHHhhc--CCChhHHHHHHHHHHHHH
Q psy6156 50 VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFL--PNIMPALLQAYE--NQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 50 ~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L--~~iiP~l~~a~~--~~~s~VRKaaVfClVal~ 119 (176)
|-+.+...+...+...+..++..++.++ ...+|--...+ +.+++.+..-+. ..+..+.+++..|+.+-|
T Consensus 44 ~~~~i~~~~~~~~~d~~i~~~~~l~~lf-p~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc 116 (157)
T PF11701_consen 44 ISDFIESLLDEGEMDSLIIAFSALTALF-PGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC 116 (157)
T ss_dssp HHHHHHHHHCCHHCCHHHHHHHHHHHHC-TTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccccchhHHHHHHHHHHHh-CCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 5555556666666678889999999999 77777665554 578888888887 888899999999988655
No 119
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=67.06 E-value=44 Score=24.00 Aligned_cols=51 Identities=22% Similarity=0.418 Sum_probs=40.2
Q ss_pred ChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCC
Q psy6156 46 ALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQD 104 (176)
Q Consensus 46 ~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~ 104 (176)
..+.++.++...+++.+.=+-+.|||.+..++...+ ..++|.|++.|.|.+
T Consensus 40 ~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p--------~~vl~~L~~~y~~~~ 90 (92)
T PF10363_consen 40 DIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP--------DEVLPILLDEYADPS 90 (92)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh--------HHHHHHHHHHHhCcc
Confidence 455688888899998887799999999999984422 236788888888765
No 120
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=66.74 E-value=22 Score=29.15 Aligned_cols=82 Identities=11% Similarity=0.177 Sum_probs=52.3
Q ss_pred chHhhHHHHHHHHhcChhHHHHHHH------HHhhcChHHHHHhhhh-------hhhccCcchHHHHHHHHHHHHhhcC-
Q psy6156 16 LFLPNIMPALLQAYENQDSCVRKCS------VFCMVALYKVTRILFP-------LIIAEEHPINLVAIKMLTKVIEQNG- 81 (176)
Q Consensus 16 ~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~p~~~l~vL~p-------~l~~~~~~~~~~aLkmLtklv~~~~- 81 (176)
-.++..||-..|.....+..-|=.| ++..-+.++++.+|-. .+++.+..+...+|+.|..++...+
T Consensus 34 Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 34 LDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred cchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 3466788888888877653322211 2222255555554443 3578888888899999999853222
Q ss_pred -CchHHhhhchHHHHHH
Q psy6156 82 -KGPVELFLPNIMPALL 97 (176)
Q Consensus 82 -~d~l~~~L~~iiP~l~ 97 (176)
-+.+-+++.++.|.+-
T Consensus 114 vG~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 114 VGEALVPYYRQLLPVLN 130 (183)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 2677788888888876
No 121
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=66.70 E-value=38 Score=37.16 Aligned_cols=101 Identities=13% Similarity=0.151 Sum_probs=68.8
Q ss_pred hHHHHHHHHhcChhHHHHHHH---HHhhc--ChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHh---hhch
Q psy6156 20 NIMPALLQAYENQDSCVRKCS---VFCMV--ALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVEL---FLPN 91 (176)
Q Consensus 20 ~iL~~LLd~~~d~e~~VrkAa---v~~~v--~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~---~L~~ 91 (176)
..+|.|++.+++.+.-+++-+ ++..+ .-...++-|..++.+++......+++.+..+++-.+.++... .-..
T Consensus 530 GAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~g 609 (2102)
T PLN03200 530 GAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAAND 609 (2102)
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccc
Confidence 467888888887654444332 22221 122355667777777777777778888888775444443211 1247
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156 92 IMPALLQAYENQDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 92 iiP~l~~a~~~~~s~VRKaaVfClVal~~ 120 (176)
-+|.|.+-.++.+.+++|.|..++-.++.
T Consensus 610 gL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a 638 (2102)
T PLN03200 610 ALRTLIQLLSSSKEETQEKAASVLADIFS 638 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999988864
No 122
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=66.57 E-value=11 Score=23.15 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=20.7
Q ss_pred HhhHHHHHHHHhcChhHHHHHHHH
Q psy6156 18 LPNIMPALLQAYENQDSCVRKCSV 41 (176)
Q Consensus 18 l~~iL~~LLd~~~d~e~~VrkAav 41 (176)
-..++..+..++.|....||+|++
T Consensus 16 ~~~v~~~i~~rl~D~s~~VR~aav 39 (42)
T PF12765_consen 16 SSDVQSAIIRRLSDSSPSVREAAV 39 (42)
T ss_pred hHHHHHHHHHHhcCCChHHHHHHH
Confidence 347888889999999999999885
No 123
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=64.68 E-value=88 Score=28.29 Aligned_cols=130 Identities=17% Similarity=0.347 Sum_probs=72.5
Q ss_pred hhchHhhHHHHHHHHhcChhHHHHHHHHHhh---cChHHHHHhhhhhhhcc------CcchHHHHHHHHHHHHhhcCCc-
Q psy6156 14 VELFLPNIMPALLQAYENQDSCVRKCSVFCM---VALYKVTRILFPLIIAE------EHPINLVAIKMLTKVIEQNGKG- 83 (176)
Q Consensus 14 ~e~~l~~iL~~LLd~~~d~e~~VrkAav~~~---v~p~~~l~vL~p~l~~~------~~~~~~~aLkmLtklv~~~~~d- 83 (176)
++-||+-++..++| ..++-.|+||+-+. --.++.++....+++.. +-......+.|...+. ...--
T Consensus 195 Lq~YF~kvisal~d---Es~~~~r~aAl~sLr~dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL-~N~~iF 270 (450)
T COG5095 195 LQMYFDKVISALLD---ESDEQTRDAALESLRNDSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLL-KNKYIF 270 (450)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-cCCcee
Confidence 56666666666643 33567788876643 23344444444444322 2223333444444444 22222
Q ss_pred ---hHHhhhchHHHHHHH-hhcCCCh-----hHHHHHHHHHHHHHHHhcCC--ccccccccCcHHHHHHHHHHHhhhccc
Q psy6156 84 ---PVELFLPNIMPALLQ-AYENQDS-----CVRKCSVFCMVALYKEFGES--VLSPYINKLSGAKLKLLQLYIKRSQTH 152 (176)
Q Consensus 84 ---~l~~~L~~iiP~l~~-a~~~~~s-----~VRKaaVfClVal~~~lGe~--~l~P~L~~L~~~k~kLl~iYi~R~~~~ 152 (176)
-++..+|+++-+++. -..+.-- .+|+-|-+-+=-.|..+|+. .++|.+ -+-|+..|.+|.+..
T Consensus 271 vdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRv------trTllKafLD~~k~~ 344 (450)
T COG5095 271 VDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRV------TRTLLKAFLDREKTE 344 (450)
T ss_pred ecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHH------HHHHHHHHHhccccc
Confidence 234445555555543 3333333 49999999988888999886 455544 357888899888754
Q ss_pred C
Q psy6156 153 S 153 (176)
Q Consensus 153 ~ 153 (176)
+
T Consensus 345 s 345 (450)
T COG5095 345 S 345 (450)
T ss_pred c
Confidence 3
No 124
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=64.04 E-value=26 Score=25.54 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=46.0
Q ss_pred CCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHHhhh
Q psy6156 81 GKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRS 149 (176)
Q Consensus 81 ~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi~R~ 149 (176)
+++.+..+.+.++..+..||-|-.++||.-|+.=+=-+-...+++ -..++=.|+++-|++=-
T Consensus 1 ~~~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~-------~~~~~~~kil~~f~~ll 62 (102)
T PF12333_consen 1 QPELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE-------LCSGGWVKILPNFLDLL 62 (102)
T ss_pred ChHHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH-------hHhhhHHHHHHHHHHHH
Confidence 367788999999999999999999999999877655444444444 22344566788777644
No 125
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=63.87 E-value=6.7 Score=34.45 Aligned_cols=65 Identities=18% Similarity=0.264 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccc
Q psy6156 67 LVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYIN 132 (176)
Q Consensus 67 ~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~ 132 (176)
.-||..-..+++.++++.+...++-..||+.--|.+.+-.||-.-..-.=..+..+|. .+.|-++
T Consensus 73 ~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~ 137 (307)
T PF04118_consen 73 QKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPCLK 137 (307)
T ss_pred HHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHHHH
Confidence 3689999999999999999999999999999999999999999877777777778888 4877764
No 126
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=63.77 E-value=53 Score=23.73 Aligned_cols=80 Identities=19% Similarity=0.269 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHhhcCh---HHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHH
Q psy6156 32 QDSCVRKCSVFCMVAL---YKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVR 108 (176)
Q Consensus 32 ~e~~VrkAav~~~v~p---~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VR 108 (176)
..+.+...+.++.-.. .....++...+.......++.+|=++..+++.....--......+.|.+..+|....+++|
T Consensus 17 S~~~I~~lt~~a~~~~~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r 96 (114)
T cd03562 17 SQPSIQTLTKLAIENRKHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTR 96 (114)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 4566665554443222 2377777788888888889999999999996655544433444557788899998888888
Q ss_pred HHH
Q psy6156 109 KCS 111 (176)
Q Consensus 109 Kaa 111 (176)
+..
T Consensus 97 ~kl 99 (114)
T cd03562 97 KKL 99 (114)
T ss_pred HHH
Confidence 743
No 127
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=63.22 E-value=42 Score=24.41 Aligned_cols=89 Identities=12% Similarity=0.169 Sum_probs=50.3
Q ss_pred HHHHHhcChhHHHHHHHHHhhcC---hHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHH----HH
Q psy6156 24 ALLQAYENQDSCVRKCSVFCMVA---LYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMP----AL 96 (176)
Q Consensus 24 ~LLd~~~d~e~~VrkAav~~~v~---p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP----~l 96 (176)
..|+......+.+..++.+++=. ...+..++...+.....+.++..|=++..++..............+.| .+
T Consensus 4 ~~L~~L~~s~~~I~~lt~~~~~~~~~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~~~~ 83 (121)
T smart00582 4 QKLESLNNSQESIQTLTKWAIEHASHAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQDAL 83 (121)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 34445556677777776554422 224777777777777667788888888888754433211112233333 34
Q ss_pred HHhhcCCChhHHHHHH
Q psy6156 97 LQAYENQDSCVRKCSV 112 (176)
Q Consensus 97 ~~a~~~~~s~VRKaaV 112 (176)
...+++..+++|+...
T Consensus 84 ~~~~~~~~~~~~~ki~ 99 (121)
T smart00582 84 RDVLGAANDETKKKIR 99 (121)
T ss_pred HHHHHhCCHHHHHHHH
Confidence 4444555556665443
No 128
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=62.94 E-value=98 Score=27.51 Aligned_cols=55 Identities=18% Similarity=0.088 Sum_probs=39.3
Q ss_pred HhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHH
Q psy6156 86 ELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYI 146 (176)
Q Consensus 86 ~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi 146 (176)
-.++.+.+-....||+++++.+|.+|..|==.+...+..++. -++..++|+-.=+
T Consensus 269 w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~------~~~k~l~lL~~Pl 323 (372)
T PF12231_consen 269 WEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNEL------TSPKRLKLLCQPL 323 (372)
T ss_pred cHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCcc------ccHHHHHHHHHHH
Confidence 457888899999999999999999999987666664444411 1345566654444
No 129
>KOG1240|consensus
Probab=62.56 E-value=20 Score=37.36 Aligned_cols=64 Identities=13% Similarity=0.126 Sum_probs=30.0
Q ss_pred HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHH
Q psy6156 50 VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMV 116 (176)
Q Consensus 50 ~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClV 116 (176)
.++.|.+++|+.||....+=..-++-+.--.+...+.+ -++|-+.+++.|.+.-|=-.|..|+-
T Consensus 618 iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~se---yllPLl~Q~ltD~EE~Viv~aL~~ls 681 (1431)
T KOG1240|consen 618 ILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSE---YLLPLLQQGLTDGEEAVIVSALGSLS 681 (1431)
T ss_pred hHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHH---HHHHHHHHhccCcchhhHHHHHHHHH
Confidence 56666666666666655554444443321222221111 13444445555555555444444444
No 130
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=62.51 E-value=79 Score=31.02 Aligned_cols=120 Identities=10% Similarity=0.080 Sum_probs=71.5
Q ss_pred HHHHHhCCCchhchHhhHHHHHHHHhcCh---hHHHHHHH-HHh--h-cChHH------HHHhhhhhhhccCcchHHHHH
Q psy6156 4 KVIEQNGKGPVELFLPNIMPALLQAYENQ---DSCVRKCS-VFC--M-VALYK------VTRILFPLIIAEEHPINLVAI 70 (176)
Q Consensus 4 ~~~e~~~~~~~e~~l~~iL~~LLd~~~d~---e~~VrkAa-v~~--~-v~p~~------~l~vL~p~l~~~~~~~~~~aL 70 (176)
++.+..-.+++..+|.-++.++|-+-++. +.+++=-+ ++. + =.|+. .++.+.....+.+-...--++
T Consensus 33 ~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~l 112 (885)
T COG5218 33 ELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSL 112 (885)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHH
Confidence 44444445667777888888888777743 45555322 111 0 12331 333333334444445555677
Q ss_pred HHHHHHHhhcCCchHHh-hhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156 71 KMLTKVIEQNGKGPVEL-FLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 71 kmLtklv~~~~~d~l~~-~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~ 125 (176)
.++..+..-..+ +.+ ....++-.+.+..-|-++.||..||||+..+--.-||+
T Consensus 113 qila~~~d~v~e--IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne 166 (885)
T COG5218 113 QILALLSDVVRE--IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE 166 (885)
T ss_pred HHHHHHHHhcch--HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh
Confidence 777776644333 222 23456667777778889999999999999877665655
No 131
>KOG2137|consensus
Probab=61.52 E-value=59 Score=31.88 Aligned_cols=120 Identities=18% Similarity=0.312 Sum_probs=72.4
Q ss_pred hchHhhHHHHHHHHhcChhHHHHHHH------HHhhcChHHHHHhhhhhh-----hccCcchHHHHHHHHHHHHhhcCCc
Q psy6156 15 ELFLPNIMPALLQAYENQDSCVRKCS------VFCMVALYKVTRILFPLI-----IAEEHPINLVAIKMLTKVIEQNGKG 83 (176)
Q Consensus 15 e~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~p~~~l~vL~p~l-----~~~~~~~~~~aLkmLtklv~~~~~d 83 (176)
+.+.+.++|-|..+++|.+-.+++.+ ++..++-..+=+.+.|-+ .+.+-..++.++-++.++++++++-
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~ 463 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA 463 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 47788899999999999766665543 555565444445677754 4556788888999999999776655
Q ss_pred hHHhhhchHHHHHHHhhcCCChh--HHHHHHHHHHHHHHHhcCC----cccccc------ccCcHHH
Q psy6156 84 PVELFLPNIMPALLQAYENQDSC--VRKCSVFCMVALYKEFGES----VLSPYI------NKLSGAK 138 (176)
Q Consensus 84 ~l~~~L~~iiP~l~~a~~~~~s~--VRKaaVfClVal~~~lGe~----~l~P~L------~~L~~~k 138 (176)
.+ ++++. ++.+++.-..++ .++.-++--+.+-.--|.+ .+.|.+ +.|+..|
T Consensus 464 ~v---~d~~l-pi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~~~Q 526 (700)
T KOG2137|consen 464 AV---LDELL-PILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLNGEQ 526 (700)
T ss_pred Hh---HHHHH-HHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccccHHH
Confidence 44 44444 445555444443 3333333333332223311 244555 4577766
No 132
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=60.88 E-value=80 Score=31.17 Aligned_cols=122 Identities=19% Similarity=0.237 Sum_probs=69.9
Q ss_pred hhchHhhHHHHHHHHhcChhHHHHHHH--HHhhcCh--------HH---HHHhhhhhhhccCcchHHHHHHHHHHHHhhc
Q psy6156 14 VELFLPNIMPALLQAYENQDSCVRKCS--VFCMVAL--------YK---VTRILFPLIIAEEHPINLVAIKMLTKVIEQN 80 (176)
Q Consensus 14 ~e~~l~~iL~~LLd~~~d~e~~VrkAa--v~~~v~p--------~~---~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~ 80 (176)
--+|.--+.|-|-|++.|.+.+=|+.+ +..++.. +. .++.|-|-|-..-+-.-......+..+..-+
T Consensus 835 s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~l 914 (975)
T COG5181 835 SLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVL 914 (975)
T ss_pred HHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHh
Confidence 446777788999999999877777654 3333211 11 4444444332222222222233333332222
Q ss_pred CCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHH-HHHHHhcCCccccccc---cCcHHHHHHHHH
Q psy6156 81 GKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMV-ALYKEFGESVLSPYIN---KLSGAKLKLLQL 144 (176)
Q Consensus 81 ~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClV-al~~~lGe~~l~P~L~---~L~~~k~kLl~i 144 (176)
+. +-+|-.+.++.-|+++.|||+ ||-| ..-.+...+.|.|+++ .+|+--.|-+++
T Consensus 915 g~-------g~~m~Yv~qGLFHPs~~VRk~--ywtvyn~myv~~~damvp~ypv~~d~n~e~~~~l~i 973 (975)
T COG5181 915 GS-------GAMMKYVQQGLFHPSSTVRKR--YWTVYNIMYVFDSDAMVPCYPVEEDLNPELARTLHI 973 (975)
T ss_pred cc-------HHHHHHHHHhccCchHHHHHH--HHHHHhhhhhcccccccccccCCCCcCHHHHhhhhc
Confidence 22 356778899999999999997 4443 2334455556888885 666665555443
No 133
>KOG4413|consensus
Probab=60.12 E-value=37 Score=31.06 Aligned_cols=78 Identities=17% Similarity=0.261 Sum_probs=57.4
Q ss_pred HHhhcChHHHHHhhhhhhhcc----CcchHHHHHHHHHHHHhhcCCchHHhhh----chHHHHHHHhhcCCChhHHHHHH
Q psy6156 41 VFCMVALYKVTRILFPLIIAE----EHPINLVAIKMLTKVIEQNGKGPVELFL----PNIMPALLQAYENQDSCVRKCSV 112 (176)
Q Consensus 41 v~~~v~p~~~l~vL~p~l~~~----~~~~~~~aLkmLtklv~~~~~d~l~~~L----~~iiP~l~~a~~~~~s~VRKaaV 112 (176)
+|..--+-.+.+-+.|.++.+ +.-.+..++|-+..++|..+...+..++ .++.|-+..+..+.+-+|.|||+
T Consensus 70 LfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAi 149 (524)
T KOG4413|consen 70 LFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAI 149 (524)
T ss_pred HHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHH
Confidence 333333334555556655443 5567778999999999988876665554 48999999999999999999999
Q ss_pred HHHHHH
Q psy6156 113 FCMVAL 118 (176)
Q Consensus 113 fClVal 118 (176)
..+-.+
T Consensus 150 esikri 155 (524)
T KOG4413|consen 150 ESIKRI 155 (524)
T ss_pred HHHHHH
Confidence 987644
No 134
>KOG1060|consensus
Probab=59.90 E-value=26 Score=34.99 Aligned_cols=74 Identities=23% Similarity=0.297 Sum_probs=59.8
Q ss_pred HhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcccccc
Q psy6156 52 RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYI 131 (176)
Q Consensus 52 ~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L 131 (176)
.-|.+.+++.+...+.-|+|-+-.++ ..+.| ...++|.+++-.-..+.+|+| ||-+|.+---| -.|.|
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~i-A~G~d-----vS~~Fp~VVKNVaskn~EVKk-----LVyvYLlrYAE-eqpdL 105 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALI-AKGKD-----VSLLFPAVVKNVASKNIEVKK-----LVYVYLLRYAE-EQPDL 105 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHH-hcCCc-----HHHHHHHHHHHhhccCHHHHH-----HHHHHHHHHhh-cCCCc
Confidence 35677888888888888998888887 55665 678999999999999999999 77788766666 68888
Q ss_pred ccCcHH
Q psy6156 132 NKLSGA 137 (176)
Q Consensus 132 ~~L~~~ 137 (176)
.-|+-+
T Consensus 106 ALLSIn 111 (968)
T KOG1060|consen 106 ALLSIN 111 (968)
T ss_pred eeeeHH
Confidence 877754
No 135
>KOG0803|consensus
Probab=59.81 E-value=23 Score=37.04 Aligned_cols=87 Identities=16% Similarity=0.289 Sum_probs=74.2
Q ss_pred HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccc
Q psy6156 49 KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLS 128 (176)
Q Consensus 49 ~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~ 128 (176)
.-++.+.--+...+..++.-|+.-+..+++..+.+++..+||...--+.+..-|.+..||-+...-+-.+...++.. +.
T Consensus 41 sel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~-ls 119 (1312)
T KOG0803|consen 41 SELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKK-LS 119 (1312)
T ss_pred HHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH-hh
Confidence 34555555667778899999999999999999999888877777777788889999999999999999999999999 99
Q ss_pred cccccCcH
Q psy6156 129 PYINKLSG 136 (176)
Q Consensus 129 P~L~~L~~ 136 (176)
||+..+-+
T Consensus 120 p~LK~li~ 127 (1312)
T KOG0803|consen 120 PFLKSLIP 127 (1312)
T ss_pred HHHHhhhh
Confidence 99976543
No 136
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=57.74 E-value=94 Score=24.60 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=25.2
Q ss_pred HhhhchHHHHHHHhhcCCChhHHHHHHHHHH
Q psy6156 86 ELFLPNIMPALLQAYENQDSCVRKCSVFCMV 116 (176)
Q Consensus 86 ~~~L~~iiP~l~~a~~~~~s~VRKaaVfClV 116 (176)
...-+.+|=.+-++|-+-+.+.|++||..+.
T Consensus 127 ~~lrd~lilvLRKamf~r~~~~R~~Av~Gfl 157 (158)
T PF14676_consen 127 PSLRDSLILVLRKAMFSRELDARQMAVNGFL 157 (158)
T ss_dssp HHHHHHHHHHHHHHTT-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHhc
Confidence 3455788889999999999999999998754
No 137
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=56.84 E-value=17 Score=29.50 Aligned_cols=56 Identities=16% Similarity=0.283 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHhhcCCchHHhhhchHHHHH------------HHhhcCCChhHHHHHHHHHHHHHH
Q psy6156 65 INLVAIKMLTKVIEQNGKGPVELFLPNIMPAL------------LQAYENQDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 65 ~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l------------~~a~~~~~s~VRKaaVfClVal~~ 120 (176)
..++||.+|..+++..++-.+....+.++|.- .-..+|+++.||-+|..-+-+|-.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~ 69 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLE 69 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHH
Confidence 56789999999998878888877766666643 455679999999999988887643
No 138
>KOG1820|consensus
Probab=56.13 E-value=24 Score=35.19 Aligned_cols=92 Identities=11% Similarity=0.086 Sum_probs=77.9
Q ss_pred HHhhcChHHHHHhhhhhh----hccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHH
Q psy6156 41 VFCMVALYKVTRILFPLI----IAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMV 116 (176)
Q Consensus 41 v~~~v~p~~~l~vL~p~l----~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClV 116 (176)
-+..+++.+|++-+.+.+ .+.+|+....|+.-+-+.++.-..+......+.+..++.-..-|.+-.|-..+--|+-
T Consensus 241 ~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~ 320 (815)
T KOG1820|consen 241 NFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILE 320 (815)
T ss_pred ccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHH
Confidence 355678889998888875 5669999999999888888766656667788889999999999999999999999999
Q ss_pred HHHHHhcCCcccccccc
Q psy6156 117 ALYKEFGESVLSPYINK 133 (176)
Q Consensus 117 al~~~lGe~~l~P~L~~ 133 (176)
.|...+|.. +.||...
T Consensus 321 ~ia~~lr~~-~~~~~~~ 336 (815)
T KOG1820|consen 321 LIAKKLRPL-FRKYAKN 336 (815)
T ss_pred HHHHhcchh-hHHHHHh
Confidence 999999999 8888753
No 139
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=55.73 E-value=86 Score=23.58 Aligned_cols=81 Identities=17% Similarity=0.192 Sum_probs=59.9
Q ss_pred cChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhc-hHHHHHHHhhc---CCChhHHHHHHHHHHHHHH
Q psy6156 45 VALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLP-NIMPALLQAYE---NQDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 45 v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~-~iiP~l~~a~~---~~~s~VRKaaVfClVal~~ 120 (176)
..|..+++.|.--+++++...-..||.+|..+++..+..--...-. +++--+.+-+. .+.++||+-+.-.+-....
T Consensus 33 ~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 33 NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4667788999999988888888889999999997766633222223 44444444443 5788999999888888888
Q ss_pred HhcCC
Q psy6156 121 EFGES 125 (176)
Q Consensus 121 ~lGe~ 125 (176)
.+++.
T Consensus 113 ~f~~~ 117 (133)
T cd03561 113 SFGGH 117 (133)
T ss_pred HhcCC
Confidence 88875
No 140
>KOG1059|consensus
Probab=55.10 E-value=9.9 Score=37.45 Aligned_cols=47 Identities=15% Similarity=0.360 Sum_probs=41.0
Q ss_pred hhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccC
Q psy6156 87 LFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKL 134 (176)
Q Consensus 87 ~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L 134 (176)
+..-++.+-+..-++++.+.|||-||--|-.++..-.|. ++|-++.|
T Consensus 140 dLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA-lr~~FprL 186 (877)
T KOG1059|consen 140 DLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA-LRPCFPRL 186 (877)
T ss_pred hhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh-HhhhHHHH
Confidence 344578888999999999999999999999999999998 99888755
No 141
>KOG2137|consensus
Probab=55.07 E-value=1.2e+02 Score=29.90 Aligned_cols=137 Identities=20% Similarity=0.308 Sum_probs=87.5
Q ss_pred chHhhHHHHHHHHhc--Chh----HHHHHH-HHHhhcChHHHHHhhhhh----hhccCcchHHHHHHHHHHHHhhcCCch
Q psy6156 16 LFLPNIMPALLQAYE--NQD----SCVRKC-SVFCMVALYKVTRILFPL----IIAEEHPINLVAIKMLTKVIEQNGKGP 84 (176)
Q Consensus 16 ~~l~~iL~~LLd~~~--d~e----~~VrkA-av~~~v~p~~~l~vL~p~----l~~~~~~~~~~aLkmLtklv~~~~~d~ 84 (176)
.|-..++|.|...|. |.+ =.+.++ .++.-++++.+..-+.|. +++.+-++--.+|+.+..+.+.++-.-
T Consensus 345 ~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~ 424 (700)
T KOG2137|consen 345 EFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPF 424 (700)
T ss_pred hhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHH
Confidence 344455666666665 222 122222 255567887755555554 455566666789999999998887433
Q ss_pred HHhhhchHHHHHH-HhhcCCChhHHHHHHHHHHHHHHHhcCC----ccccccccC----cHHHHHHHHHHHhhhcccCCC
Q psy6156 85 VELFLPNIMPALL-QAYENQDSCVRKCSVFCMVALYKEFGES----VLSPYINKL----SGAKLKLLQLYIKRSQTHSSS 155 (176)
Q Consensus 85 l~~~L~~iiP~l~-~a~~~~~s~VRKaaVfClVal~~~lGe~----~l~P~L~~L----~~~k~kLl~iYi~R~~~~~~~ 155 (176)
+. ..|+|.+. -++++++..|+-+++-|+-.+-..+... .+.|++..- +.-.++.+.+|..=.-..-+|
T Consensus 425 vk---~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g 501 (700)
T KOG2137|consen 425 VK---QAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG 501 (700)
T ss_pred HH---HHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc
Confidence 32 34555443 2899999999999999998887655542 366776544 445688889998766555554
No 142
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=54.92 E-value=1.3e+02 Score=27.75 Aligned_cols=67 Identities=15% Similarity=0.100 Sum_probs=43.0
Q ss_pred HhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCC-ChhHHHHHHHHHHHH
Q psy6156 52 RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQ-DSCVRKCSVFCMVAL 118 (176)
Q Consensus 52 ~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~-~s~VRKaaVfClVal 118 (176)
..+.+.++..+|.+...+.++++.++.......-...++.+..-+...+.+. .++-.-.+|.|+-.+
T Consensus 104 ~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~L 171 (429)
T cd00256 104 EPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQML 171 (429)
T ss_pred HHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHH
Confidence 3444567788999999999999999843332222234555666666666543 356666677776544
No 143
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=54.81 E-value=41 Score=31.21 Aligned_cols=92 Identities=13% Similarity=0.173 Sum_probs=60.6
Q ss_pred hCCCchhchHhhHHHHHHHHhcChhHHHHHHHHHhhcChHHHH----------HhhhhhhhccC--cchHHHHHHHHHHH
Q psy6156 9 NGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVT----------RILFPLIIAEE--HPINLVAIKMLTKV 76 (176)
Q Consensus 9 ~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAav~~~v~p~~~l----------~vL~p~l~~~~--~~~~~~aLkmLtkl 76 (176)
..++.+|..+...||.+|.........||++.+-..-+....+ ..|....++.+ .-...-+|=.+++=
T Consensus 12 dtD~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g 91 (501)
T PF13001_consen 12 DTDEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMG 91 (501)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHh
Confidence 3456789999999999999999999999987521111111111 11222222222 23444678888888
Q ss_pred HhhcCCchHHhhhchHHHHHHHhh
Q psy6156 77 IEQNGKGPVELFLPNIMPALLQAY 100 (176)
Q Consensus 77 v~~~~~d~l~~~L~~iiP~l~~a~ 100 (176)
++|++.++-.+.+|.++.++....
T Consensus 92 ~~Rl~~~e~~~llP~ll~~is~~~ 115 (501)
T PF13001_consen 92 FDRLDDEERRELLPSLLKGISKKP 115 (501)
T ss_pred hhcCCHHHHHHHHHHHHHhhccCc
Confidence 999999998888888888876444
No 144
>KOG1060|consensus
Probab=54.80 E-value=87 Score=31.51 Aligned_cols=86 Identities=24% Similarity=0.366 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHH
Q psy6156 65 INLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQL 144 (176)
Q Consensus 65 ~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~i 144 (176)
+.-.||+.|+.+= +..+.|-++=.+.++..|+++.|||+|--.+-.+|..=.|+ |-.|++
T Consensus 124 iRasALRvlSsIR-------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~------------k~qL~e- 183 (968)
T KOG1060|consen 124 IRASALRVLSSIR-------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQ------------KDQLEE- 183 (968)
T ss_pred HHHHHHHHHHhcc-------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhh------------HHHHHH-
Confidence 3445777776653 45566777778889999999999999999999888654433 112233
Q ss_pred HHhhhcccCCCCCCCcchhhHhhHhh
Q psy6156 145 YIKRSQTHSSSVPTSLSIRSLERVCS 170 (176)
Q Consensus 145 Yi~R~~~~~~~~~~~~~~~~~~~~~~ 170 (176)
-|+.-..-++..=.++-+-++|.||-
T Consensus 184 ~I~~LLaD~splVvgsAv~AF~evCP 209 (968)
T KOG1060|consen 184 VIKKLLADRSPLVVGSAVMAFEEVCP 209 (968)
T ss_pred HHHHHhcCCCCcchhHHHHHHHHhch
Confidence 34555555555555666777777773
No 145
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=54.67 E-value=63 Score=23.36 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=46.5
Q ss_pred ChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhc-hHHHHHH------HhhcCCChhHHHHHHHHH
Q psy6156 46 ALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLP-NIMPALL------QAYENQDSCVRKCSVFCM 115 (176)
Q Consensus 46 ~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~-~iiP~l~------~a~~~~~s~VRKaaVfCl 115 (176)
.+..+.+.|..-+++.+|...+-||.+|..+++..+..-....-. .++--+. ...+++...||+-+...+
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~ 110 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELV 110 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHH
Confidence 344588888888888899999999999999997766553332222 1222222 133467888988776543
No 146
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=54.38 E-value=98 Score=23.84 Aligned_cols=81 Identities=16% Similarity=0.158 Sum_probs=57.6
Q ss_pred cChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhh-chHHHHHHHhhc-CCChhHHHHHHHHHHHHHHHh
Q psy6156 45 VALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFL-PNIMPALLQAYE-NQDSCVRKCSVFCMVALYKEF 122 (176)
Q Consensus 45 v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L-~~iiP~l~~a~~-~~~s~VRKaaVfClVal~~~l 122 (176)
..|..+++.|.--+++++...-+-||.+|..+++..+..--..+. .+++..+.+-.. ++.+.|++-+.-.+-+....+
T Consensus 37 ~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 37 VQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 457778888998888888878888999999999776653221111 244444444333 788999998888888888777
Q ss_pred cCC
Q psy6156 123 GES 125 (176)
Q Consensus 123 Ge~ 125 (176)
+++
T Consensus 117 ~~~ 119 (142)
T cd03569 117 RNK 119 (142)
T ss_pred CCC
Confidence 665
No 147
>KOG1837|consensus
Probab=53.84 E-value=1.1e+02 Score=32.76 Aligned_cols=66 Identities=24% Similarity=0.334 Sum_probs=54.1
Q ss_pred chHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcccccc
Q psy6156 64 PINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYI 131 (176)
Q Consensus 64 ~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L 131 (176)
.....||..++.++++++ |....+||+.+|-+.+-|.|.+-+|.-.+..-.=-+-.++||. +..|+
T Consensus 1556 ~~r~~ai~~~~~l~~~lg-e~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~-l~~y~ 1621 (1621)
T KOG1837|consen 1556 KARYLAIIQVKLLYTKLG-ENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEP-LQSYL 1621 (1621)
T ss_pred HHHHHHHHHHHHHHHHhc-chhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchh-hhhcC
Confidence 455678999999986665 5567799999999999999999999999988666677889997 66553
No 148
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=52.92 E-value=88 Score=22.84 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhc
Q psy6156 65 INLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYE 101 (176)
Q Consensus 65 ~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~ 101 (176)
....|+++-..+++.++.+++.+.++.++-.+.+-++
T Consensus 70 l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 70 LREEALSCWNCFIKTLDEEDLGPLLDQIFAILLPLWD 106 (107)
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhcc
Confidence 4456899999999999999999999999988876554
No 149
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=51.00 E-value=51 Score=32.49 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=67.8
Q ss_pred hhHHHHHHH------HHhhcChHHHHHhhhhhhhcc-CcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCC
Q psy6156 32 QDSCVRKCS------VFCMVALYKVTRILFPLIIAE-EHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQD 104 (176)
Q Consensus 32 ~e~~VrkAa------v~~~v~p~~~l~vL~p~l~~~-~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~ 104 (176)
.++-||.-. ++..+--+++++.|...-.+. .|+.....||+.++..+-++.. ...+|..++.++.++..|.+
T Consensus 293 ~deYVRnvt~ra~~vva~algv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s-~l~hl~~l~~ci~~~l~D~~ 371 (975)
T COG5181 293 KDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRS-RLSHLGPLLKCISKLLKDRS 371 (975)
T ss_pred ccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCcc-HHhhhhhHHHHHHHHhhccc
Confidence 467777631 455555556666666655444 6999999999999999666654 56899999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhcC
Q psy6156 105 SCVRKCSVFCMVALYKEFGE 124 (176)
Q Consensus 105 s~VRKaaVfClVal~~~lGe 124 (176)
--||--+-..|-++.-..|.
T Consensus 372 ~~vRi~tA~alS~lae~~~P 391 (975)
T COG5181 372 RFVRIDTANALSYLAELVGP 391 (975)
T ss_pred eeeeehhHhHHHHHHHhcCC
Confidence 99997766666666555554
No 150
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=50.48 E-value=1.2e+02 Score=24.22 Aligned_cols=66 Identities=15% Similarity=0.304 Sum_probs=50.0
Q ss_pred hhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156 55 FPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 55 ~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~ 125 (176)
....-+.+.+....|++.+.-+++..=.-. .+-+|.++.---|+++.+|+.|..++.+++.+-+.-
T Consensus 14 l~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 14 LELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 334456677888899999999884321111 267899999999999999999999999988766544
No 151
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=49.94 E-value=77 Score=24.75 Aligned_cols=72 Identities=22% Similarity=0.379 Sum_probs=48.0
Q ss_pred hhHHHHHHHHhcCh-hHHHHHHH-H---HhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHH
Q psy6156 19 PNIMPALLQAYENQ-DSCVRKCS-V---FCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIM 93 (176)
Q Consensus 19 ~~iL~~LLd~~~d~-e~~VrkAa-v---~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~ii 93 (176)
...+|+++++..-. .+.+.++- + +..+.|..++..|.+...+ ..+..-|++.| +..+.|++...+|+++
T Consensus 38 p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~aL~LL~~~~~~--~~vr~yAv~~L----~~~~~~~l~~ylpQLV 111 (152)
T cd00864 38 PKALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPEDALELLSPKYPD--PVVRQYAVRVL----ESASDDELLLYLPQLV 111 (152)
T ss_pred hHHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHHHHHHcCCcCCC--HHHHHHHHHHH----HhCCHHHHHHHHHHHH
Confidence 36788999888733 35555542 2 2357889999999987654 34444555555 5577788877777776
Q ss_pred HHH
Q psy6156 94 PAL 96 (176)
Q Consensus 94 P~l 96 (176)
-++
T Consensus 112 QaL 114 (152)
T cd00864 112 QAL 114 (152)
T ss_pred HHH
Confidence 666
No 152
>KOG0211|consensus
Probab=48.38 E-value=1.5e+02 Score=29.50 Aligned_cols=114 Identities=19% Similarity=0.175 Sum_probs=78.0
Q ss_pred hCCCchhchHhhHHHHHHHHhcChhHHHHHHHH--HhhcChHHHHH--------hhhhhhhccCcchHHHHHHHHHHHHh
Q psy6156 9 NGKGPVELFLPNIMPALLQAYENQDSCVRKCSV--FCMVALYKVTR--------ILFPLIIAEEHPINLVAIKMLTKVIE 78 (176)
Q Consensus 9 ~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAav--~~~v~p~~~l~--------vL~p~l~~~~~~~~~~aLkmLtklv~ 78 (176)
++-.++..+-.-.+|.+.+...|..--+|.|.+ +..++-+...+ .+..++.+..+.+.-+|.+-++++++
T Consensus 468 ~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~ 547 (759)
T KOG0211|consen 468 NDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVE 547 (759)
T ss_pred cCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHH
Confidence 344455566667888888888887777776541 11111112222 22233444456778899999999999
Q ss_pred hcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156 79 QNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 79 ~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~ 125 (176)
..|.+- .--.++|-+.....+++--+|-+..||+-.+--++|.+
T Consensus 548 ~~G~~w---~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e 591 (759)
T KOG0211|consen 548 TFGSEW---ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE 591 (759)
T ss_pred HhCcch---hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH
Confidence 988433 34567788777777778999999999999999999987
No 153
>KOG1059|consensus
Probab=48.11 E-value=29 Score=34.39 Aligned_cols=94 Identities=18% Similarity=0.338 Sum_probs=59.9
Q ss_pred HhhHHHHHHHHhcChhHHHHHHH--HHhhc---ChHHHH---Hhhhhhhhcc--CcchHHHHHHHHHHHHhhcCCchHHh
Q psy6156 18 LPNIMPALLQAYENQDSCVRKCS--VFCMV---ALYKVT---RILFPLIIAE--EHPINLVAIKMLTKVIEQNGKGPVEL 87 (176)
Q Consensus 18 l~~iL~~LLd~~~d~e~~VrkAa--v~~~v---~p~~~l---~vL~p~l~~~--~~~~~~~aLkmLtklv~~~~~d~l~~ 87 (176)
+-+.+|+|-+...|.+..|..|| |+|-+ +|..++ +.+.-++.++ +| ...-.||+.+.+. .+++
T Consensus 179 lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNW-mLIKiiKLF~aLt------plEP 251 (877)
T KOG1059|consen 179 LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNW-VLIKLLKLFAALT------PLEP 251 (877)
T ss_pred HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCe-ehHHHHHHHhhcc------ccCc
Confidence 55678999999999997777776 56544 444443 3444455443 67 3445566666665 2555
Q ss_pred hhc-hHHHHHHHhhcCCChh-HHHHHHHHHHHH
Q psy6156 88 FLP-NIMPALLQAYENQDSC-VRKCSVFCMVAL 118 (176)
Q Consensus 88 ~L~-~iiP~l~~a~~~~~s~-VRKaaVfClVal 118 (176)
.|+ .++|.++.-|++|++. +==.+|.|.|+.
T Consensus 252 RLgKKLieplt~li~sT~AmSLlYECvNTVVa~ 284 (877)
T KOG1059|consen 252 RLGKKLIEPITELMESTVAMSLLYECVNTVVAV 284 (877)
T ss_pred hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheee
Confidence 664 7888888888887652 333445555555
No 154
>KOG3818|consensus
Probab=47.94 E-value=44 Score=31.29 Aligned_cols=70 Identities=16% Similarity=0.153 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHH
Q psy6156 68 VAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAK 138 (176)
Q Consensus 68 ~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k 138 (176)
.++|.|++....+.+++-..-+.. |+-+++-+-..++.+..+|+...|.=|...|.+|.+-|+.-++..+
T Consensus 26 ~~ik~L~e~~~~~~~~er~~~i~~-i~e~iq~q~l~s~~~~r~~~~~avq~~~~sg~~~~e~~F~vidAf~ 95 (525)
T KOG3818|consen 26 EAIKLLVELALDWKKEERKKWINK-IIELIQKQKLNSPHEEREAIEAAVQECSSSGTQDAEKYFNVIDAFS 95 (525)
T ss_pred hHHHHHHHHHhhhHHHHhhhhHHH-HHHHHHhhccCCchhhHHHHHHHHHHhhhcccccHHHHHhhcchhc
Confidence 899999999988888888777776 6777777778888888889999999999999988888887666554
No 155
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=47.79 E-value=1.4e+02 Score=25.36 Aligned_cols=70 Identities=19% Similarity=0.329 Sum_probs=42.9
Q ss_pred chHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHH-------HHHhcCCccccccccCcH
Q psy6156 64 PINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVAL-------YKEFGESVLSPYINKLSG 136 (176)
Q Consensus 64 ~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal-------~~~lGe~~l~P~L~~L~~ 136 (176)
+.-++++++|+.+.-. +.-...+...+|.+..-...-+..+|-.+..+++-| ...++.+.+..++.-++.
T Consensus 110 ~~Q~agLrlL~nLtv~---~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~ 186 (254)
T PF04826_consen 110 EVQLAGLRLLTNLTVT---NDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNS 186 (254)
T ss_pred HHHHHHHHHHHccCCC---cchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHcc
Confidence 5557899999998411 222334455666666666666777887888877754 345555544455544443
No 156
>KOG2032|consensus
Probab=47.67 E-value=1.3e+02 Score=28.64 Aligned_cols=72 Identities=13% Similarity=0.206 Sum_probs=60.7
Q ss_pred cchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHH-HhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCc
Q psy6156 63 HPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALL-QAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLS 135 (176)
Q Consensus 63 ~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~-~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~ 135 (176)
.....-|++.|..+.+. .|+.+..+-+.++-+++ .-||+-..+|-=.|+.|+.-+.-...+.++.+|+-.+.
T Consensus 272 a~~r~~a~r~L~~~as~-~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ia 344 (533)
T KOG2032|consen 272 AKSRGMACRGLGNTASG-APDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIA 344 (533)
T ss_pred hHHHHHHHHHHHHHhcc-CcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHH
Confidence 35566799999999944 89999999888888877 45778889999999999999999999999999986554
No 157
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=47.63 E-value=1.4e+02 Score=29.33 Aligned_cols=53 Identities=23% Similarity=0.393 Sum_probs=37.9
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcccc-----ccccCcHHHHHHHHHHHh
Q psy6156 91 NIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSP-----YINKLSGAKLKLLQLYIK 147 (176)
Q Consensus 91 ~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P-----~L~~L~~~k~kLl~iYi~ 147 (176)
.+.-.+.++.+|+.-+||.-|-|.+=+|- .. ++..| ++..+++..++|+ +||.
T Consensus 526 sv~~~lkRclnD~DdeVRdrAsf~l~~~~--~~-da~~pl~~sd~~~dipsle~~l~-~yIs 583 (898)
T COG5240 526 SVENALKRCLNDQDDEVRDRASFLLRNMR--LS-DACEPLFSSDELGDIPSLELELI-GYIS 583 (898)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhhh--hh-hhhhccccccccCCcchhHHhhh-eeec
Confidence 45567889999999999999999988776 22 34666 4556666666654 3443
No 158
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=47.43 E-value=1.7e+02 Score=25.50 Aligned_cols=72 Identities=11% Similarity=0.184 Sum_probs=49.3
Q ss_pred HHhhhhhhhccCcchHHHHHHHHHHHHhhcC---CchHHhhhchHHHHHHHhhcCCC-------------hhHHHHHHHH
Q psy6156 51 TRILFPLIIAEEHPINLVAIKMLTKVIEQNG---KGPVELFLPNIMPALLQAYENQD-------------SCVRKCSVFC 114 (176)
Q Consensus 51 l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~---~d~l~~~L~~iiP~l~~a~~~~~-------------s~VRKaaVfC 114 (176)
++.+...++..+......+|++|+.++.=.+ ..++....+--.+.+.+-+...+ +++|.+.|.-
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 8888999999988788899999999995123 34555555544444443332111 3999999988
Q ss_pred HHHHHHHh
Q psy6156 115 MVALYKEF 122 (176)
Q Consensus 115 lVal~~~l 122 (176)
..++....
T Consensus 138 ~Lsfl~~~ 145 (330)
T PF11707_consen 138 WLSFLSSG 145 (330)
T ss_pred HHHHHccC
Confidence 88776654
No 159
>KOG3613|consensus
Probab=46.80 E-value=76 Score=34.26 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=74.8
Q ss_pred cchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhc-CCChhHHHHHHHHHHHHHHHhcCCcccccccc-CcHHHHH
Q psy6156 63 HPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYE-NQDSCVRKCSVFCMVALYKEFGESVLSPYINK-LSGAKLK 140 (176)
Q Consensus 63 ~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~-~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~-L~~~k~k 140 (176)
+-.+.-.||=++=++=..+-|+-..++|+|+-.+.+-+. ++++-|||++--|+=.+-.++..+.+.++-|= .+.-.+-
T Consensus 1501 ~e~ra~~LkRiaf~ifsSp~Dqy~~~lp~iqErl~~~Lrv~~~~~lk~~vFL~~RVLLLR~Sp~hL~~LWPImv~ELv~v 1580 (1749)
T KOG3613|consen 1501 LEQRAMLLKRIAFLIFSSPLDQYLGYLPDIQERLADLLRVSQSPKLKKAVFLFFRVLLLRISPDHLTSLWPIMVYELVQV 1580 (1749)
T ss_pred HHHHHHHHHhhHhheeeCcHHhhhhhchhHHHHHHHhcccCCCchHHHHHHHHHHHHHHhcCHhhcccchHHHHHHHHHH
Confidence 444556788888777566778899999999999999999 99999999999999999999999833333331 1222333
Q ss_pred HHHHHHhhhcccCCCCCCCcchhh----HhhHhhhh
Q psy6156 141 LLQLYIKRSQTHSSSVPTSLSIRS----LERVCSVL 172 (176)
Q Consensus 141 Ll~iYi~R~~~~~~~~~~~~~~~~----~~~~~~~~ 172 (176)
+.+.|-+=.-+.++|+++.-+..+ +=.+|..|
T Consensus 1581 f~q~eq~l~~~~~~~~s~~~~~qtw~~l~L~ACKlL 1616 (1749)
T KOG3613|consen 1581 FLQLEQDLQVGEANGQSTAYSSQTWLMLYLEACKLL 1616 (1749)
T ss_pred HHHHHhhhccccccccccccCchHHHHHHHHHHHHH
Confidence 333333333345566666555555 44556543
No 160
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=46.57 E-value=1.3e+02 Score=27.54 Aligned_cols=53 Identities=21% Similarity=0.398 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCC--ChhHHHHHHH-HHHHHH
Q psy6156 67 LVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQ--DSCVRKCSVF-CMVALY 119 (176)
Q Consensus 67 ~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~--~s~VRKaaVf-ClVal~ 119 (176)
.-+.++|..+++.++.+.+.+.++.++--+.+.+.+. ..-||+-++| |+.+.+
T Consensus 218 ~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~ 273 (435)
T PF03378_consen 218 HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIK 273 (435)
T ss_dssp HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999999999999998888743 3446666666 544433
No 161
>KOG1077|consensus
Probab=46.37 E-value=1.8e+02 Score=29.09 Aligned_cols=86 Identities=15% Similarity=0.186 Sum_probs=61.8
Q ss_pred HHHhhhhhhhccCcchHHHHHHHHHHHHh-hcCCchHHhhhchHHHHHHHhhc-CCChhHHHHHHHHHHHHHHHhcC---
Q psy6156 50 VTRILFPLIIAEEHPINLVAIKMLTKVIE-QNGKGPVELFLPNIMPALLQAYE-NQDSCVRKCSVFCMVALYKEFGE--- 124 (176)
Q Consensus 50 ~l~vL~p~l~~~~~~~~~~aLkmLtklv~-~~~~d~l~~~L~~iiP~l~~a~~-~~~s~VRKaaVfClVal~~~lGe--- 124 (176)
|...|...+++.+--+.-.|+.-+.+++. ..+.|.+..+.+.|+ ..+. +...+||+-||.-|-+||-+=.-
T Consensus 330 ~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii----~sLkterDvSirrravDLLY~mcD~~Nak~I 405 (938)
T KOG1077|consen 330 AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTII----NSLKTERDVSIRRRAVDLLYAMCDVSNAKQI 405 (938)
T ss_pred HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHH----HHhccccchHHHHHHHHHHHHHhchhhHHHH
Confidence 88889999998887788889999999863 233455666655544 4555 67889999999999988854222
Q ss_pred -CccccccccCcHHHH
Q psy6156 125 -SVLSPYINKLSGAKL 139 (176)
Q Consensus 125 -~~l~P~L~~L~~~k~ 139 (176)
++|..||+..+.+=+
T Consensus 406 V~elLqYL~tAd~sir 421 (938)
T KOG1077|consen 406 VAELLQYLETADYSIR 421 (938)
T ss_pred HHHHHHHHhhcchHHH
Confidence 137788877766543
No 162
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=46.34 E-value=14 Score=31.45 Aligned_cols=46 Identities=24% Similarity=0.395 Sum_probs=42.1
Q ss_pred hchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccC
Q psy6156 89 LPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKL 134 (176)
Q Consensus 89 L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L 134 (176)
.+..+|.+.+-++++++.|+.-+..++.+-....|.+.+.||+..+
T Consensus 206 a~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~i 251 (262)
T PF14500_consen 206 APFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTI 251 (262)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999998654
No 163
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=45.46 E-value=53 Score=27.68 Aligned_cols=96 Identities=10% Similarity=0.268 Sum_probs=53.3
Q ss_pred hHHHHHhCCCchhchHhhHHHHHHHHhcCh--hHHHHHHHHHhhcChHHH---HHhhhhhhhccCcchHHHHHHHHHHHH
Q psy6156 3 TKVIEQNGKGPVELFLPNIMPALLQAYENQ--DSCVRKCSVFCMVALYKV---TRILFPLIIAEEHPINLVAIKMLTKVI 77 (176)
Q Consensus 3 t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~--e~~VrkAav~~~v~p~~~---l~vL~p~l~~~~~~~~~~aLkmLtklv 77 (176)
-++++....+..+..++.+.|.+.+.+.|. .-++.+ ++...++++. ++.+.+.+.. --...-+-+.+.+++
T Consensus 26 Q~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~--~l~~~~~~~~~~i~~~~~~~~~~--l~~~~~g~~vlqkll 101 (322)
T cd07920 26 QQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQK--LFEHGTEEQRLQLLEKILGHVVR--LSLDMYGCRVIQKLL 101 (322)
T ss_pred HHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHH--HHHhCCHHHHHHHHHHHHHHHHH--HcccchhHHHHHHHH
Confidence 345555566666777888888888888886 356665 4444555543 3333222210 001113455566666
Q ss_pred hhcCCchHHhhhchHHHHHHHhhcC
Q psy6156 78 EQNGKGPVELFLPNIMPALLQAYEN 102 (176)
Q Consensus 78 ~~~~~d~l~~~L~~iiP~l~~a~~~ 102 (176)
+..++++....+.++.|.+.+-+.|
T Consensus 102 ~~~~~~~~~~i~~~l~~~~~~L~~d 126 (322)
T cd07920 102 ESISEEQISLLVKELRGHVVELVKD 126 (322)
T ss_pred HhcCHHHHHHHHHHHHHCHHHHhhc
Confidence 6666666666666666655544444
No 164
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=43.31 E-value=83 Score=23.07 Aligned_cols=63 Identities=11% Similarity=0.088 Sum_probs=42.3
Q ss_pred HhhHHHHHHHHhcChhHHHHHHHHHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhh
Q psy6156 18 LPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFL 89 (176)
Q Consensus 18 l~~iL~~LLd~~~d~e~~VrkAav~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L 89 (176)
++.+..|+.++.-..++.+ .+...++.|..+++...+|....++.++.+++++-....+...+
T Consensus 8 L~~I~~Kl~~~Li~~~dl~---------~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~i 70 (98)
T PF14726_consen 8 LESIEFKLEHGLISEEDLV---------KERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDI 70 (98)
T ss_pred HHHHHHHHHhccccHHHHc---------cHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHc
Confidence 3445555555554433333 46678889999999999998899999999988554444443333
No 165
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=43.06 E-value=59 Score=26.34 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=48.5
Q ss_pred hhHHHHHHHHhcCh-hHHHHHHH----HHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHH
Q psy6156 19 PNIMPALLQAYENQ-DSCVRKCS----VFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIM 93 (176)
Q Consensus 19 ~~iL~~LLd~~~d~-e~~VrkAa----v~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~ii 93 (176)
...+|+++.+-+=. ...++++- .+.-++|.+++..|.+... +..+..-|++.| +..+.|++...||+++
T Consensus 43 p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~aL~LL~~~~~--~~~Vr~yAV~~L----~~~~d~~l~~yLpQLV 116 (184)
T smart00145 43 PKALPKFLLSVNWSDADEVAQALSLLKKWAPLDPEDALELLSPKFP--DPFVRAYAVERL----ESASDEELLLYLLQLV 116 (184)
T ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHHHHHHhCccCC--CHHHHHHHHHHH----HhCCHHHHHHHHHHHH
Confidence 45688888765533 24455542 3446889999999998776 345555666555 5677888887777777
Q ss_pred HHH
Q psy6156 94 PAL 96 (176)
Q Consensus 94 P~l 96 (176)
-+|
T Consensus 117 QaL 119 (184)
T smart00145 117 QAL 119 (184)
T ss_pred HHH
Confidence 666
No 166
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=42.73 E-value=74 Score=25.64 Aligned_cols=79 Identities=9% Similarity=0.111 Sum_probs=61.3
Q ss_pred ccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHH
Q psy6156 60 AEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKL 139 (176)
Q Consensus 60 ~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~ 139 (176)
+++-...-+|..+|-.+++ ...+.+ .+.+++..+..++.| ..++|--+--.+..+...-.++ +.++|..|-..=.
T Consensus 38 DDGLelRK~ayE~lytlLd-~~~~~~--~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~-v~~~Ld~l~~~l~ 112 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLD-TCLSRI--DISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEE-VLQRLDSLVEPLR 112 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHH-STCSSS---HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHH-HHHCCTTTHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHH-HHHHhC--CHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHH
Confidence 3345677799999999984 555555 378899999999999 9999999999999887777666 8888888877766
Q ss_pred HHHH
Q psy6156 140 KLLQ 143 (176)
Q Consensus 140 kLl~ 143 (176)
+.++
T Consensus 113 ~~L~ 116 (169)
T PF08623_consen 113 KTLS 116 (169)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 6665
No 167
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=42.25 E-value=97 Score=24.90 Aligned_cols=73 Identities=14% Similarity=0.141 Sum_probs=49.7
Q ss_pred hhHHHHHHHHhcCh-hHHHHHHH----HHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHH
Q psy6156 19 PNIMPALLQAYENQ-DSCVRKCS----VFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIM 93 (176)
Q Consensus 19 ~~iL~~LLd~~~d~-e~~VrkAa----v~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~ii 93 (176)
...+|+++.+.+-. .+.|.++- -+.-++|+.++..|.+...+ ..+..-|++.|. ..+.|++...|++++
T Consensus 38 p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~aLeLL~~~f~d--~~VR~yAV~~L~----~~sd~eL~~yL~QLV 111 (171)
T cd00872 38 PQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQALELLDCNFPD--EHVREFAVRCLE----KLSDDELLQYLLQLV 111 (171)
T ss_pred cHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCcCCC--HHHHHHHHHHHH----hCCHHHHHHHHHHHH
Confidence 45789999887733 35566653 34457889999999987754 456666777665 466777777776666
Q ss_pred HHHH
Q psy6156 94 PALL 97 (176)
Q Consensus 94 P~l~ 97 (176)
-+|.
T Consensus 112 QaLK 115 (171)
T cd00872 112 QVLK 115 (171)
T ss_pred HHHH
Confidence 5554
No 168
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=42.06 E-value=1.4e+02 Score=28.62 Aligned_cols=94 Identities=15% Similarity=0.133 Sum_probs=58.6
Q ss_pred HHHHHHHHhcChhHHHHHHH-----HHhhcCh--HHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHH
Q psy6156 21 IMPALLQAYENQDSCVRKCS-----VFCMVAL--YKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIM 93 (176)
Q Consensus 21 iL~~LLd~~~d~e~~VrkAa-----v~~~v~p--~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~ii 93 (176)
-...+|++.+-....=|-|| .|..+|- +.-+.++..+..+.+..+...|||-|-.+++. + .++++.++
T Consensus 24 ~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~-~----~~~v~kva 98 (556)
T PF05918_consen 24 DYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD-N----PEHVSKVA 98 (556)
T ss_dssp HHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T-------T-HHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh-H----HHHHhHHH
Confidence 34566677765444434444 4555543 34888999999999999999999999988843 2 33556677
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156 94 PALLQAYENQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 94 P~l~~a~~~~~s~VRKaaVfClVal~ 119 (176)
-.|.+-+...++..+.++-.+|+.++
T Consensus 99 DvL~QlL~tdd~~E~~~v~~sL~~ll 124 (556)
T PF05918_consen 99 DVLVQLLQTDDPVELDAVKNSLMSLL 124 (556)
T ss_dssp HHHHHHTT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 77777777777777777777775554
No 169
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=40.77 E-value=70 Score=31.30 Aligned_cols=56 Identities=13% Similarity=0.241 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156 65 INLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 65 ~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~ 125 (176)
...-||.-+...+ |++-+++.+=+|-+..-|+|.+.+=|.-|-.|+-.+|..+||=
T Consensus 20 ~~~~Al~~In~~v-----DqlwpeIsddl~~Ie~lydd~sf~~remaaL~~SKvYy~LgeY 75 (926)
T COG5116 20 RESEALDVINAHV-----DQLWPEISDDLRYIEALYDDDSFDPREMAALCLSKVYYVLGEY 75 (926)
T ss_pred hHHHHHHHHHHHH-----HHhhhhhhchhhHHHHhhccCCCCHHHHHHHHHHHHHHHHHhH
Confidence 4456777777777 4567777777889999999999999999999999999999984
No 170
>KOG2973|consensus
Probab=40.74 E-value=58 Score=29.24 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=18.7
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156 95 ALLQAYENQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 95 ~l~~a~~~~~s~VRKaaVfClVal~ 119 (176)
-++.-.+++++.|||+||.-++.+.
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt 31 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLT 31 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcc
Confidence 3566778999999999995555443
No 171
>KOG1243|consensus
Probab=40.25 E-value=60 Score=31.80 Aligned_cols=127 Identities=16% Similarity=0.241 Sum_probs=71.6
Q ss_pred hHhhHHHHHHHHhcChhHHHHHHHHHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhh-------cCCc---hHH
Q psy6156 17 FLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQ-------NGKG---PVE 86 (176)
Q Consensus 17 ~l~~iL~~LLd~~~d~e~~VrkAav~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~-------~~~d---~l~ 86 (176)
+-+.++|-+...+.|....+|+-++- ++.+|+|.++.. ..+.--+|.+.++... .+.. .+.
T Consensus 366 ~~d~I~phv~~G~~DTn~~Lre~Tlk-------sm~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~ 436 (690)
T KOG1243|consen 366 LNDQIFPHVALGFLDTNATLREQTLK-------SMAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIA 436 (690)
T ss_pred hcchhHHHHHhhcccCCHHHHHHHHH-------HHHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeecccc
Confidence 34467777777777777777764432 444455555432 2233344444444320 0000 001
Q ss_pred hhh------chHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC----ccccccccCcHHH--------HHHHHHHHhh
Q psy6156 87 LFL------PNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES----VLSPYINKLSGAK--------LKLLQLYIKR 148 (176)
Q Consensus 87 ~~L------~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~----~l~P~L~~L~~~k--------~kLl~iYi~R 148 (176)
.++ +-++-.+.+++.|+=+.-|||+|..+-+.+.-+... ++.|-+..|...+ -+.+..|..+
T Consensus 437 ~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~k 516 (690)
T KOG1243|consen 437 PHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEK 516 (690)
T ss_pred cccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccchhhHHHHHHHHHHhh
Confidence 111 112234677899999999999999998887666554 3556665444322 3567888888
Q ss_pred hccc
Q psy6156 149 SQTH 152 (176)
Q Consensus 149 ~~~~ 152 (176)
..+.
T Consensus 517 l~~~ 520 (690)
T KOG1243|consen 517 LEKV 520 (690)
T ss_pred hhhh
Confidence 7665
No 172
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=39.77 E-value=52 Score=21.41 Aligned_cols=41 Identities=15% Similarity=0.035 Sum_probs=31.7
Q ss_pred cCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156 80 NGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 80 ~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~ 120 (176)
.-|+++.+.-++++--|.+....-.++.|++-|.+|+-+.+
T Consensus 8 cYp~~~~~Fp~~L~~lL~~~~~~L~p~lR~~lv~aLiLLRn 48 (52)
T PF08158_consen 8 CYPKETKDFPQELIDLLRNHHTVLDPDLRMKLVKALILLRN 48 (52)
T ss_pred ccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHc
Confidence 34556666666777777788888899999999999996653
No 173
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=39.75 E-value=81 Score=29.29 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=43.4
Q ss_pred HHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcC
Q psy6156 72 MLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGE 124 (176)
Q Consensus 72 mLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe 124 (176)
...++.---+.+.+...|+.++|.+..-+.++..+|||.++..+..+-..+..
T Consensus 4 V~lRlalAdtD~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~ 56 (501)
T PF13001_consen 4 VELRLALADTDEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKS 56 (501)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhcc
Confidence 34444423346788999999999999999999999999999999988888877
No 174
>KOG0392|consensus
Probab=39.57 E-value=1.2e+02 Score=32.12 Aligned_cols=73 Identities=14% Similarity=0.209 Sum_probs=55.5
Q ss_pred hhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccC
Q psy6156 58 IIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKL 134 (176)
Q Consensus 58 l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L 134 (176)
+.+..--...+|.+.++.+++..+.|........++| -+++...-+|+.+.-|++......++-.+.||.+-|
T Consensus 825 ~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~----ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Ll 897 (1549)
T KOG0392|consen 825 VRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLP----LLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLL 897 (1549)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hccchhhHhhhhhHHHHHHHHHHhhcccccccceee
Confidence 3344445666888999999877777766666666665 456668899999999999999988888899988644
No 175
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=38.68 E-value=40 Score=26.16 Aligned_cols=36 Identities=28% Similarity=0.538 Sum_probs=26.0
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcccccc
Q psy6156 92 IMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYI 131 (176)
Q Consensus 92 iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L 131 (176)
+--.+.+...+..++|.|.|..|+.+. +++.+.||=
T Consensus 18 l~~~~~~LL~~~d~~vQklAL~cll~~----k~~~l~pY~ 53 (141)
T PF07539_consen 18 LYDALLRLLSSRDPEVQKLALDCLLTW----KDPYLTPYK 53 (141)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHhHH
Confidence 334456778899999999999999863 333455553
No 176
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=38.37 E-value=1.8e+02 Score=22.17 Aligned_cols=69 Identities=13% Similarity=0.210 Sum_probs=43.9
Q ss_pred HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHH--Hhh---------cCCChhHHHHHHHHHHHH
Q psy6156 50 VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALL--QAY---------ENQDSCVRKCSVFCMVAL 118 (176)
Q Consensus 50 ~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~--~a~---------~~~~s~VRKaaVfClVal 118 (176)
+...|.--++++..-++.=|||+|..+++.. .+.....+-.=...+. +.| ++....||.+|--|+=.+
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G-~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG-NSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhC-CHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 4445555567777777788999999999554 4555444433223222 222 345668999999988776
Q ss_pred H
Q psy6156 119 Y 119 (176)
Q Consensus 119 ~ 119 (176)
+
T Consensus 118 f 118 (122)
T cd03572 118 F 118 (122)
T ss_pred h
Confidence 5
No 177
>KOG1061|consensus
Probab=38.33 E-value=1.1e+02 Score=30.23 Aligned_cols=97 Identities=19% Similarity=0.267 Sum_probs=66.2
Q ss_pred HHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHHHHhh-----cCh-----HHHHHhhhhhhhccCcchHHHHHHHHHH
Q psy6156 6 IEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCM-----VAL-----YKVTRILFPLIIAEEHPINLVAIKMLTK 75 (176)
Q Consensus 6 ~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAav~~~-----v~p-----~~~l~vL~p~l~~~~~~~~~~aLkmLtk 75 (176)
+..++.-++....+.+...+..+.+|....||+++.++. .++ ...+..|...+.+++.-.-..|+..|..
T Consensus 107 lrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~e 186 (734)
T KOG1061|consen 107 LRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSE 186 (734)
T ss_pred hhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHH
Confidence 334455566778888999999999999999999875443 233 3377788888887777777778999988
Q ss_pred HHhhcCCchHHhhhchHHHHHHHhhcC
Q psy6156 76 VIEQNGKGPVELFLPNIMPALLQAYEN 102 (176)
Q Consensus 76 lv~~~~~d~l~~~L~~iiP~l~~a~~~ 102 (176)
..+..+-...-..-..++-.+..+.+.
T Consensus 187 I~e~~~~~~~~~l~~~~~~~lL~al~e 213 (734)
T KOG1061|consen 187 IHESHPSVNLLELNPQLINKLLEALNE 213 (734)
T ss_pred HHHhCCCCCcccccHHHHHHHHHHHHH
Confidence 885554333333344555555555543
No 178
>KOG2062|consensus
Probab=38.25 E-value=94 Score=31.11 Aligned_cols=65 Identities=17% Similarity=0.276 Sum_probs=55.1
Q ss_pred hhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcC
Q psy6156 55 FPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGE 124 (176)
Q Consensus 55 ~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe 124 (176)
..++.+.+...++-||.-+..++ |++-.++.+=+|.+..-|+|.+..=|+.|-.|.-.+|..+|+
T Consensus 10 ialL~e~~~~lk~~Al~~in~vV-----d~~WpEIsd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lge 74 (929)
T KOG2062|consen 10 IALLREPEPSLKVHALFKINNVV-----DQFWPEISDSLPKIESLYEDETFPERQLAALLASKVYYYLGE 74 (929)
T ss_pred HHHHhCCchHHHHHHHHHHHHHH-----HHhhHHhhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHH
Confidence 34456666677888999999888 457778888899999999999999999999999999999987
No 179
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=38.20 E-value=4.2e+02 Score=26.45 Aligned_cols=144 Identities=11% Similarity=0.131 Sum_probs=92.7
Q ss_pred hhHHHHHHHHhcChhHHHHHHH--HHhhcChHHHHHhhh----hhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchH
Q psy6156 19 PNIMPALLQAYENQDSCVRKCS--VFCMVALYKVTRILF----PLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNI 92 (176)
Q Consensus 19 ~~iL~~LLd~~~d~e~~VrkAa--v~~~v~p~~~l~vL~----p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~i 92 (176)
...++.+.+-+.|.++-+|-.| ..+.+.-..++..+. ..+++......-.|+-.+.++. +.+++-..+. ..
T Consensus 91 lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly-~ld~~l~~~~--g~ 167 (757)
T COG5096 91 LLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLY-RLDKDLYHEL--GL 167 (757)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH-hcCHhhhhcc--cH
Confidence 3456667777778888888776 344454444444333 3345555567777888999999 7777766443 12
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcccccc-------ccCc---HHH--HHHHHHHHhhhcccCCCCCCCc
Q psy6156 93 MPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYI-------NKLS---GAK--LKLLQLYIKRSQTHSSSVPTSL 160 (176)
Q Consensus 93 iP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L-------~~L~---~~k--~kLl~iYi~R~~~~~~~~~~~~ 160 (176)
+-.+.....|++|.|--+|+..+-.+|.- ...+|. ++|+ .++ ..+.-++.++........+. +
T Consensus 168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e----~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~-s 242 (757)
T COG5096 168 IDILKELVADSDPIVIANALASLAEIDPE----LAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPD-S 242 (757)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhchh----hhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCC-c
Confidence 33455667899999999999988888766 244443 3443 333 56677888888877666666 4
Q ss_pred chhhHhhHhh
Q psy6156 161 SIRSLERVCS 170 (176)
Q Consensus 161 ~~~~~~~~~~ 170 (176)
.....||+|.
T Consensus 243 ~~~~~~~~~~ 252 (757)
T COG5096 243 AEDFEERLSP 252 (757)
T ss_pred HHHHHHhccc
Confidence 4455556554
No 180
>KOG0889|consensus
Probab=37.80 E-value=2.2e+02 Score=33.30 Aligned_cols=90 Identities=18% Similarity=0.382 Sum_probs=66.5
Q ss_pred CchhchHhhHHHHHHHHhcChh---------HHHHHHH--HHh------hcChH--HHHHhhhhhhhccCcchHHHHHHH
Q psy6156 12 GPVELFLPNIMPALLQAYENQD---------SCVRKCS--VFC------MVALY--KVTRILFPLIIAEEHPINLVAIKM 72 (176)
Q Consensus 12 ~~~e~~l~~iL~~LLd~~~d~e---------~~VrkAa--v~~------~v~p~--~~l~vL~p~l~~~~~~~~~~aLkm 72 (176)
+... +++-++|.+++-..+.+ .-.|..+ ++- .+.|+ .+++++..++..++.+--..|||.
T Consensus 42 ~~~~-~l~~~ip~~l~~l~~~~~~~~~~~~~~~lR~~~Leil~r~~~~e~~~~~~~~~~~~~~~vl~~dNeen~~l~lki 120 (3550)
T KOG0889|consen 42 ESYL-FLEMLIPLLLNFLENTEKSFSAESPEQELRNLVLEILNRLPHNEVFKPFSQELLKVLMRVLTNDNEENAILCLKI 120 (3550)
T ss_pred HHHH-HHHHHHHHHHHHhcccCchhhhcCcHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccchhhhhHHHH
Confidence 3344 89999999999998642 3445443 222 23444 389999999999999999999999
Q ss_pred HHHHHhhcCCchHHhhhchHHHHHHHhhcCC
Q psy6156 73 LTKVIEQNGKGPVELFLPNIMPALLQAYENQ 103 (176)
Q Consensus 73 Ltklv~~~~~d~l~~~L~~iiP~l~~a~~~~ 103 (176)
++.+. +.-.+.+..++..++--+++-|.+.
T Consensus 121 i~~l~-r~f~~~~~~~v~~fl~~V~~ly~~~ 150 (3550)
T KOG0889|consen 121 ITDLF-RQFKSLVEQHVQPFLDIVIDLYKNM 150 (3550)
T ss_pred HHHHH-HhhchHHHHHHHHHHHHHHHHHHhh
Confidence 99999 5777788888887777776665543
No 181
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=37.24 E-value=51 Score=26.99 Aligned_cols=64 Identities=19% Similarity=0.225 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccc
Q psy6156 68 VAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYIN 132 (176)
Q Consensus 68 ~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~ 132 (176)
-++..++.++++++.. -.+.+..++-.+.+-.++.+-+-|+++-.|+-+.-..+|-+.+.-.++
T Consensus 19 ~vl~v~s~lf~~lg~~-~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lP 82 (198)
T PF08161_consen 19 EVLNVLSALFEKLGER-SSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILP 82 (198)
T ss_pred HHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCC
Confidence 5778888888777765 345667777778888899999999999999999999999986665554
No 182
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=37.23 E-value=1.6e+02 Score=21.81 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhc
Q psy6156 65 INLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYE 101 (176)
Q Consensus 65 ~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~ 101 (176)
....|+++...++..++.+++...++.++-.+.+.++
T Consensus 70 L~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i~~~~~ 106 (107)
T smart00802 70 LRSLALRCWHVLIKTLKEEELGPLLDQIFAAILPLWP 106 (107)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc
Confidence 4457999999999999999999999999988877654
No 183
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=36.69 E-value=90 Score=26.59 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=42.8
Q ss_pred HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHH
Q psy6156 49 KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALL 97 (176)
Q Consensus 49 ~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~ 97 (176)
.+++.|..-+.++..-++.-+++.|..+++..+++.+.++...+--++.
T Consensus 208 ~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 208 FAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 4788888888888777999999999999999999999999988887776
No 184
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=36.41 E-value=1.9e+02 Score=26.51 Aligned_cols=61 Identities=16% Similarity=0.241 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHhhcCCchHHh-hhc--hHHHHHHHhhcCCChhHHHHHHHHHHHHH-HHhcCC
Q psy6156 65 INLVAIKMLTKVIEQNGKGPVEL-FLP--NIMPALLQAYENQDSCVRKCSVFCMVALY-KEFGES 125 (176)
Q Consensus 65 ~~~~aLkmLtklv~~~~~d~l~~-~L~--~iiP~l~~a~~~~~s~VRKaaVfClVal~-~~lGe~ 125 (176)
..-||+..+++++-+.+.+.+.. ..+ .++|++..++...++-|--.++.++-.+- ...|..
T Consensus 272 ~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~ 336 (464)
T PF11864_consen 272 VLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRE 336 (464)
T ss_pred HHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhh
Confidence 34478888888775554444432 133 49999999999999988888877777666 444443
No 185
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=36.33 E-value=61 Score=24.06 Aligned_cols=32 Identities=6% Similarity=-0.083 Sum_probs=26.8
Q ss_pred hchHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156 89 LPNIMPALLQAYENQDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 89 L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~ 120 (176)
-...|+-+++...|++++|+.+|+..+-+.|.
T Consensus 6 ~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~ 37 (115)
T PF14663_consen 6 EDWGIELLVTQLYDPSPEVVAAALEILEEACE 37 (115)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 34568889999999999999999988877664
No 186
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=36.08 E-value=93 Score=24.80 Aligned_cols=73 Identities=14% Similarity=0.234 Sum_probs=47.0
Q ss_pred hhHHHHHHHHhcC-hhHHHHHHH----HHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHH
Q psy6156 19 PNIMPALLQAYEN-QDSCVRKCS----VFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIM 93 (176)
Q Consensus 19 ~~iL~~LLd~~~d-~e~~VrkAa----v~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~ii 93 (176)
...+|+++.+.+= ..+.+++|- -+.-+.|+.++..|.+...+ ..+..-|++.|. ..+.|++...|++++
T Consensus 45 p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~~aLeLL~~~f~~--~~VR~yAV~~L~----~~sd~eL~~yL~QLV 118 (166)
T cd00870 45 KKALTKFLKSVNWSDEQEVKQALELMPKWAKIDIEDALELLSPYFTN--PVVRKYAVSRLK----LASDEELLLYLLQLV 118 (166)
T ss_pred cHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHcCccCCC--HHHHHHHHHHHH----hCCHHHHHHHHHHHH
Confidence 3468888887752 234455542 24457888999999987753 445556776665 466777777666665
Q ss_pred HHHH
Q psy6156 94 PALL 97 (176)
Q Consensus 94 P~l~ 97 (176)
-++.
T Consensus 119 QaLK 122 (166)
T cd00870 119 QALK 122 (166)
T ss_pred HHHH
Confidence 5554
No 187
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=35.91 E-value=89 Score=23.68 Aligned_cols=81 Identities=11% Similarity=0.147 Sum_probs=53.0
Q ss_pred cChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhh-chHHHHHHHhhcC----CChhHHHHHHHHHHHHH
Q psy6156 45 VALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFL-PNIMPALLQAYEN----QDSCVRKCSVFCMVALY 119 (176)
Q Consensus 45 v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L-~~iiP~l~~a~~~----~~s~VRKaaVfClVal~ 119 (176)
..|..+++.|.--+.+.+...-..||.+|.-+++..+..--.... .+++-.+.+...+ ....||+-+...+-...
T Consensus 38 ~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 38 DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 345668888888888888888888999999999665544322221 2555555553332 22238888887777777
Q ss_pred HHhcCC
Q psy6156 120 KEFGES 125 (176)
Q Consensus 120 ~~lGe~ 125 (176)
..++..
T Consensus 118 ~~f~~~ 123 (140)
T PF00790_consen 118 EAFKSD 123 (140)
T ss_dssp HHTTTS
T ss_pred HHHCCC
Confidence 777443
No 188
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=35.85 E-value=18 Score=28.91 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcH
Q psy6156 67 LVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSG 136 (176)
Q Consensus 67 ~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~ 136 (176)
.-+..+|.+.. .+++++..+.|+.-+| .+.||+-||.|+-. .+++++.-||++|-.
T Consensus 64 ~e~~~lL~~W~-~i~~~~aLeLL~~~f~---------~~~VR~yAV~~L~~----~sd~eL~~yL~QLVQ 119 (166)
T cd00870 64 KQALELMPKWA-KIDIEDALELLSPYFT---------NPVVRKYAVSRLKL----ASDEELLLYLLQLVQ 119 (166)
T ss_pred HHHHHHHhcCC-CCCHHHHHHHcCccCC---------CHHHHHHHHHHHHh----CCHHHHHHHHHHHHH
Confidence 34666666654 4555555555554333 48899999999874 677789999987743
No 189
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=35.81 E-value=78 Score=22.80 Aligned_cols=59 Identities=10% Similarity=0.135 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156 65 INLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 65 ~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~ 125 (176)
...+++-.|..++ ...+-.+-..+|+++-.|.+..++ ...|++++-.|+-++...=.+.
T Consensus 5 ~rH~~VLGL~Alv-~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D~ 63 (90)
T PF11919_consen 5 RRHAAVLGLSALV-LAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQDT 63 (90)
T ss_dssp HHHHHHHHHHHHH-TT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHH-HHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCccc
Confidence 4567888888888 566666777888888888888776 8899999999999988765443
No 190
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=35.44 E-value=2.1e+02 Score=22.12 Aligned_cols=81 Identities=12% Similarity=0.119 Sum_probs=61.8
Q ss_pred cChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhh-chHHHHHHHhhcC-CChhHHHHHHHHHHHHHHHh
Q psy6156 45 VALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFL-PNIMPALLQAYEN-QDSCVRKCSVFCMVALYKEF 122 (176)
Q Consensus 45 v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L-~~iiP~l~~a~~~-~~s~VRKaaVfClVal~~~l 122 (176)
..|-.+++.|.--+++.+...-+-||.+|..+++..|..--.++. .+++-.+.+-..+ +...|++=....+-+....+
T Consensus 33 ~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 33 NGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 456678888888888888777888999999999877765333333 3677777777776 88999998888888887777
Q ss_pred cCC
Q psy6156 123 GES 125 (176)
Q Consensus 123 Ge~ 125 (176)
+++
T Consensus 113 ~~~ 115 (144)
T cd03568 113 KND 115 (144)
T ss_pred CCC
Confidence 754
No 191
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=34.17 E-value=2e+02 Score=21.62 Aligned_cols=79 Identities=13% Similarity=0.137 Sum_probs=54.9
Q ss_pred ChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhh-chHHHHHHHhhcCCCh--hHHHHHHHHHHHHHHHh
Q psy6156 46 ALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFL-PNIMPALLQAYENQDS--CVRKCSVFCMVALYKEF 122 (176)
Q Consensus 46 ~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L-~~iiP~l~~a~~~~~s--~VRKaaVfClVal~~~l 122 (176)
.|..+++.|..-+++.+...-+.||.+|..+++..+..--.... .+++..+.....++.. .||+-+...+-+.+..+
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 46668888888888888778888999999999776654332222 2455555555444332 38998888888888878
Q ss_pred cC
Q psy6156 123 GE 124 (176)
Q Consensus 123 Ge 124 (176)
++
T Consensus 114 ~~ 115 (133)
T smart00288 114 KN 115 (133)
T ss_pred cC
Confidence 66
No 192
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=34.05 E-value=4.3e+02 Score=26.19 Aligned_cols=103 Identities=18% Similarity=0.248 Sum_probs=72.5
Q ss_pred hHHHHHHHHhcChhHHHHHHHHHhhcChH----HHHHhhhhhhhccCcchH-HHHHHHHHHHHh-hcCCchH-HhhhchH
Q psy6156 20 NIMPALLQAYENQDSCVRKCSVFCMVALY----KVTRILFPLIIAEEHPIN-LVAIKMLTKVIE-QNGKGPV-ELFLPNI 92 (176)
Q Consensus 20 ~iL~~LLd~~~d~e~~VrkAav~~~v~p~----~~l~vL~p~l~~~~~~~~-~~aLkmLtklv~-~~~~d~l-~~~L~~i 92 (176)
.++.+.=++++-.-+...+ ++.+.-.+ ..++++..++.-++-|++ --.++.+.++++ .++.|+= .+....+
T Consensus 15 ~if~k~Q~s~aGhrk~~a~--l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~ 92 (885)
T COG5218 15 LIFNKIQQSSAGHRKSLAE--LMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGT 92 (885)
T ss_pred HHHHHHhhhhhhHHHHHHH--HHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHH
Confidence 4555555555432222222 44443222 388899999887775544 468999999998 5555544 5677899
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHHHhcC
Q psy6156 93 MPALLQAYENQDSCVRKCSVFCMVALYKEFGE 124 (176)
Q Consensus 93 iP~l~~a~~~~~s~VRKaaVfClVal~~~lGe 124 (176)
+-++.++.++..--|||-+..-+--+-..+|+
T Consensus 93 ~~h~lRg~eskdk~VR~r~lqila~~~d~v~e 124 (885)
T COG5218 93 FYHLLRGTESKDKKVRKRSLQILALLSDVVRE 124 (885)
T ss_pred HHHHHhcccCcchhHHHHHHHHHHHHHHhcch
Confidence 99999999999999999988887777788887
No 193
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=33.97 E-value=1e+02 Score=24.77 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=46.3
Q ss_pred hhHHHHHHHHhcCh-hHHHHHHH----HHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHH
Q psy6156 19 PNIMPALLQAYENQ-DSCVRKCS----VFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIM 93 (176)
Q Consensus 19 ~~iL~~LLd~~~d~-e~~VrkAa----v~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~ii 93 (176)
...+|+++.+..+- .+.++++- .+.-++|...+..|.|...+ .++..-|++.|. ..+.|++...|++++
T Consensus 38 p~aLp~~L~s~~~w~~~~~~e~~~LL~~W~p~~p~~ALeLL~~~f~d--~~VR~yAV~~L~----~~~ddeL~~yLpQLV 111 (169)
T cd00869 38 PNALPLVLASAPSWDWANLMDVYQLLHQWAPLRPLIALELLLPKFPD--QEVRAHAVQWLA----RLSNDELLDYLPQLV 111 (169)
T ss_pred cHHHHHHHHhcccCcHHHHHHHHHHHhCCCCCCHHHHHHHcCCcCCC--hHHHHHHHHHHH----hCCHHHHHHHHHHHH
Confidence 45789999876422 24466642 23357888999999988865 345566766654 466777766555554
Q ss_pred HHH
Q psy6156 94 PAL 96 (176)
Q Consensus 94 P~l 96 (176)
-+|
T Consensus 112 QaL 114 (169)
T cd00869 112 QAL 114 (169)
T ss_pred HHH
Confidence 443
No 194
>KOG2259|consensus
Probab=33.00 E-value=1.5e+02 Score=29.39 Aligned_cols=102 Identities=13% Similarity=0.059 Sum_probs=77.5
Q ss_pred HhhHHHHHHHHhcChhHHHHHHHHHhhcChH-------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcC--CchH---
Q psy6156 18 LPNIMPALLQAYENQDSCVRKCSVFCMVALY-------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNG--KGPV--- 85 (176)
Q Consensus 18 l~~iL~~LLd~~~d~e~~VrkAav~~~v~p~-------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~--~d~l--- 85 (176)
=+-+..+|+....|++.-||++|+=.+++.. .|......++.++......+|++++--+-++.+ .+.-
T Consensus 196 ~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 196 REHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 3445666899999999999998754443332 377778888999999999999999998887773 2211
Q ss_pred HhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156 86 ELFLPNIMPALLQAYENQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 86 ~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~ 119 (176)
..+.++.+-.+++++.|-+-.||=.|-+.+=.+-
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~ 309 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFE 309 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHH
Confidence 3456889999999999999999987776665443
No 195
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=32.18 E-value=48 Score=25.92 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCCcccccccc
Q psy6156 105 SCVRKCSVFCMVALYKEFGESVLSPYINK 133 (176)
Q Consensus 105 s~VRKaaVfClVal~~~lGe~~l~P~L~~ 133 (176)
.+|-.+++.|++++..++-|..++|.+-+
T Consensus 35 ~~vE~~v~~~~~~lV~KLnE~~FRPlF~~ 63 (153)
T PF08146_consen 35 DEVESSVISAFVSLVLKLNEATFRPLFLK 63 (153)
T ss_pred HHHHHHHHHHHHHHHHHcccchhHhHHHH
Confidence 57888999999999999999999998853
No 196
>KOG1517|consensus
Probab=32.10 E-value=1.3e+02 Score=31.37 Aligned_cols=71 Identities=14% Similarity=0.088 Sum_probs=44.0
Q ss_pred HHhhhhhhhcc-CcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156 51 TRILFPLIIAE-EHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKE 121 (176)
Q Consensus 51 l~vL~p~l~~~-~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~ 121 (176)
+.+...+++++ .|=.++=+.-+|.++-+........-.=+.---.|.....|+.++||-||||.|-.+...
T Consensus 601 i~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 601 IGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 33445566665 333444567788888766655443222222223455566779999999999999877654
No 197
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=32.06 E-value=1.9e+02 Score=22.38 Aligned_cols=65 Identities=17% Similarity=0.258 Sum_probs=37.7
Q ss_pred HHHhhhhhhh--ccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChh--HHHHHHHHHH
Q psy6156 50 VTRILFPLII--AEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSC--VRKCSVFCMV 116 (176)
Q Consensus 50 ~l~vL~p~l~--~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~--VRKaaVfClV 116 (176)
++..+.+..+ ..+...-.++++++..-+ +.++-=..+...-++-|.+.|.+.+.+ ||=-|.-+|+
T Consensus 87 ~~~~l~~~~~~~~~~~~~~~~~lell~aAc--~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 87 FLESLLPLASRKSKDRKVQKAALELLSAAC--IDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHHHHHHHHH-CTS-HHHHHHHHHHHHHHT--TSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 5556666666 444555567777777654 112222335678889999999665544 4554444443
No 198
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=31.95 E-value=58 Score=26.26 Aligned_cols=72 Identities=19% Similarity=0.284 Sum_probs=42.0
Q ss_pred hhHHHHHHHHhcCh-hHHHHHHH----HHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHH
Q psy6156 19 PNIMPALLQAYENQ-DSCVRKCS----VFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIM 93 (176)
Q Consensus 19 ~~iL~~LLd~~~d~-e~~VrkAa----v~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~ii 93 (176)
...+|+++.+.+-. .+.++++- .+.-++|..++..|.+...+ ..+...|++.| +..+.|++...||+++
T Consensus 44 p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~AL~LL~~~f~~--~~VR~yAv~~L----~~~~d~~l~~yLpQLV 117 (184)
T PF00613_consen 44 PEALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPEDALELLSPNFPD--PFVRQYAVRRL----ESLSDEELLFYLPQLV 117 (184)
T ss_dssp GGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHHHHHCTSTT-----HHHHHHHHHHH----CTS-HHHHHHHHHHHH
T ss_pred chHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHHHHHHHHhhccH--HHHHHHHHHHH----HHcCchHHHHHHHHHH
Confidence 45788888877643 24455542 34457899999999987765 34455565555 4556666655544444
Q ss_pred HHH
Q psy6156 94 PAL 96 (176)
Q Consensus 94 P~l 96 (176)
-+|
T Consensus 118 QaL 120 (184)
T PF00613_consen 118 QAL 120 (184)
T ss_dssp HHG
T ss_pred HHh
Confidence 433
No 199
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=31.95 E-value=3.8e+02 Score=27.15 Aligned_cols=101 Identities=14% Similarity=0.163 Sum_probs=74.0
Q ss_pred hcChHHHHHhhhh---hhhccCcchHHHHHHHHHHHHhhcCCch-HHh----hhchHHHHHHHhhcCCChhHHHHHHHHH
Q psy6156 44 MVALYKVTRILFP---LIIAEEHPINLVAIKMLTKVIEQNGKGP-VEL----FLPNIMPALLQAYENQDSCVRKCSVFCM 115 (176)
Q Consensus 44 ~v~p~~~l~vL~p---~l~~~~~~~~~~aLkmLtklv~~~~~d~-l~~----~L~~iiP~l~~a~~~~~s~VRKaaVfCl 115 (176)
.+.|--|++-+.. ++++.-+-..-+.+.....+|++..+|+ +.+ .+.+++--+.+.+.|+++.+|--|..-+
T Consensus 291 ~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~ 370 (1128)
T COG5098 291 ELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVL 370 (1128)
T ss_pred hcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 3667777775554 4566667666678899999999988876 555 6788999999999999999999887766
Q ss_pred HHHHHHhcCCccccccccCcHHHHHHHHHHHhhhcccC
Q psy6156 116 VALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHS 153 (176)
Q Consensus 116 Val~~~lGe~~l~P~L~~L~~~k~kLl~iYi~R~~~~~ 153 (176)
-.++-.= ..-++.+.+...+-+.|-|.++
T Consensus 371 ~kifdl~---------sk~~~~r~ev~~lv~r~lqDrs 399 (1128)
T COG5098 371 EKIFDLN---------SKTVGRRHEVIRLVGRRLQDRS 399 (1128)
T ss_pred HHHHhCc---------ccccchHHHHHHHHHHHhhhhh
Confidence 6665321 2345667777777777766543
No 200
>KOG4224|consensus
Probab=30.57 E-value=1.3e+02 Score=27.90 Aligned_cols=62 Identities=11% Similarity=0.280 Sum_probs=36.9
Q ss_pred HHHhhhhhhhccCcchHHHHHHHHHHH-HhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHH
Q psy6156 50 VTRILFPLIIAEEHPINLVAIKMLTKV-IEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS 111 (176)
Q Consensus 50 ~l~vL~p~l~~~~~~~~~~aLkmLtkl-v~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaa 111 (176)
-+++|...+.+++.-...-+-..+... +.+.....+.+.=|.++|.|++-|++.++-|.=.|
T Consensus 209 ~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA 271 (550)
T KOG4224|consen 209 GLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQA 271 (550)
T ss_pred CchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHH
Confidence 456666677666543333332222221 22333334555568899999999999999875433
No 201
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=30.34 E-value=81 Score=24.53 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=50.3
Q ss_pred HhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcccccc
Q psy6156 52 RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYI 131 (176)
Q Consensus 52 ~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L 131 (176)
+.+..++.+++.=..-+++-++...+.+ ....+.++..+....+|.+--|+||+-.|+-.++...-+. +.+|+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~-v~~~l 180 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPER-VIAFL 180 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHH-HHHHH
Confidence 4566666665433344555555555534 3356777888888888999999999999999988884444 55555
Q ss_pred c
Q psy6156 132 N 132 (176)
Q Consensus 132 ~ 132 (176)
.
T Consensus 181 ~ 181 (197)
T cd06561 181 E 181 (197)
T ss_pred H
Confidence 3
No 202
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=29.81 E-value=1.3e+02 Score=25.34 Aligned_cols=34 Identities=15% Similarity=0.324 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcC
Q psy6156 69 AIKMLTKVIEQNGKGPVELFLPNIMPALLQAYEN 102 (176)
Q Consensus 69 aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~ 102 (176)
+-+.+.++++..+++.....+..+.+.+..-..|
T Consensus 165 G~~vvq~~l~~~~~~~~~~l~~~l~~~~~~L~~d 198 (322)
T cd07920 165 GCRVIQRCLEHCSEEQREPLLEEILEHALELVQD 198 (322)
T ss_pred ccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcC
Confidence 3445566666666666666666666655544444
No 203
>KOG1949|consensus
Probab=29.56 E-value=1.1e+02 Score=30.53 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=17.3
Q ss_pred hhchHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156 88 FLPNIMPALLQAYENQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 88 ~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~ 119 (176)
.+..++|.+--+++|.+-.||=|+|.-+..+-
T Consensus 299 ~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 299 LLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 34455555555556666666655555444444
No 204
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=29.11 E-value=38 Score=24.82 Aligned_cols=41 Identities=12% Similarity=0.306 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHHhhhc
Q psy6156 105 SCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQ 150 (176)
Q Consensus 105 s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi~R~~ 150 (176)
+-++|||++.+ .+|++.=..-+..|++...+-+..++.+-.
T Consensus 6 sg~~KAAilLl-----~Lgee~Aa~vlk~l~~~ei~~i~~~ma~l~ 46 (108)
T PF14842_consen 6 SGIQKAAILLL-----ALGEEAAAEVLKHLDEEEIERISREMAKLG 46 (108)
T ss_dssp HHHHHHHHHHH-----HS-HHHHHHHHHHS-HHHHHHHHHHHHT--
T ss_pred CHHHHHHHHHH-----HHCHHHHHHHHccCCHHHHHHHHHHHHccC
Confidence 56899999766 489987788888999999888888887764
No 205
>KOG1525|consensus
Probab=28.76 E-value=4.4e+02 Score=27.95 Aligned_cols=70 Identities=16% Similarity=0.198 Sum_probs=56.0
Q ss_pred HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156 50 VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 50 ~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~ 120 (176)
+++-|.-.+.+.+.....-|++++.+++ ......+...-+++.-.+...+.|-+.+||=++|.|.=..+.
T Consensus 260 vip~l~~eL~se~~~~Rl~a~~lvg~~~-~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~ 329 (1266)
T KOG1525|consen 260 VIPQLEFELLSEQEEVRLKAVKLVGRMF-SDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLL 329 (1266)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHH-hcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHh
Confidence 3334444467778888899999999999 666666767888999999999999999999999998765443
No 206
>KOG2759|consensus
Probab=28.38 E-value=4e+02 Score=24.87 Aligned_cols=109 Identities=13% Similarity=0.167 Sum_probs=68.7
Q ss_pred HHHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHHHHhhcChHHH-HHhhhhhhhccCcchHHHHHHHHHHHHhhcCCc
Q psy6156 5 VIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKV-TRILFPLIIAEEHPINLVAIKMLTKVIEQNGKG 83 (176)
Q Consensus 5 ~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAav~~~v~p~~~-l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d 83 (176)
++.+..+|....|...+++.++....-..+....++ ..+.++ ..-..+++..++|=+-.-.-+.+++++ ..+..
T Consensus 73 LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a----~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la-~~g~~ 147 (442)
T KOG2759|consen 73 LLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYA----HKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLA-CFGNC 147 (442)
T ss_pred HhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHH----HhhhccchHHHHHHHhcCChHHHHHHHHHHHHHH-Hhccc
Confidence 444555565666666666666666555555555422 123333 455566677776655555778888887 66666
Q ss_pred hHHh-hhchHHHHHHHhhcC-CChhHHHHHHHHHHHH
Q psy6156 84 PVEL-FLPNIMPALLQAYEN-QDSCVRKCSVFCMVAL 118 (176)
Q Consensus 84 ~l~~-~L~~iiP~l~~a~~~-~~s~VRKaaVfClVal 118 (176)
.+.. .++-..--+...+.+ ++++-+-.|+-||=.+
T Consensus 148 ~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~l 184 (442)
T KOG2759|consen 148 KMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTL 184 (442)
T ss_pred cccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 6655 556666667788877 8888888888887643
No 207
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=28.29 E-value=2e+02 Score=23.06 Aligned_cols=74 Identities=12% Similarity=0.207 Sum_probs=53.2
Q ss_pred HHHHhhhhhhhcc--CcchHHHHHHHHHHHHhhcCCc---hHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhc
Q psy6156 49 KVTRILFPLIIAE--EHPINLVAIKMLTKVIEQNGKG---PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFG 123 (176)
Q Consensus 49 ~~l~vL~p~l~~~--~~~~~~~aLkmLtklv~~~~~d---~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lG 123 (176)
.+++-.+.+++.. +..+...|+..|..+|. .++. .+...+ -+|.+...+.+++.++...|+.=+.|+..+-+
T Consensus 58 ~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl-~S~~ly~~V~~ev--t~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 58 SFIKKIASYVNSSAMDASILQRSLAILESIVL-NSPKLYQLVEQEV--TLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHHHHHHHccccccchHHHHHHHHHHHHHh-CCHHHHHHHhccC--CHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 4556666666544 45677789999999994 4443 333322 24556677777999999999999999999888
Q ss_pred CC
Q psy6156 124 ES 125 (176)
Q Consensus 124 e~ 125 (176)
+.
T Consensus 135 ~~ 136 (160)
T PF11841_consen 135 DS 136 (160)
T ss_pred hH
Confidence 76
No 208
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=27.99 E-value=3.9e+02 Score=24.72 Aligned_cols=125 Identities=14% Similarity=0.173 Sum_probs=74.7
Q ss_pred chhchHhhHHHHHHHHhc-C-hhHHHHHHHHHh------hcChHH------HHHhhhhhhhcc--CcchHHHHHHHHHHH
Q psy6156 13 PVELFLPNIMPALLQAYE-N-QDSCVRKCSVFC------MVALYK------VTRILFPLIIAE--EHPINLVAIKMLTKV 76 (176)
Q Consensus 13 ~~e~~l~~iL~~LLd~~~-d-~e~~VrkAav~~------~v~p~~------~l~vL~p~l~~~--~~~~~~~aLkmLtkl 76 (176)
++++.+..=+|.+.+... | -+.....-.-|. .-||-+ |.+.+..++... +.+.. -|-=.||.+
T Consensus 64 ~meqq~~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqf-EAaWalTNi 142 (526)
T COG5064 64 PMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQF-EAAWALTNI 142 (526)
T ss_pred chhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHH-HHHHHHhhh
Confidence 466666667788887654 3 233322211111 124433 555566666322 22222 233455666
Q ss_pred HhhcCCchHHhhhc-hHHHHHHHhhcCCChhHHHHHHHHHHHHH--------HHhcCCccccccccCcHHHH
Q psy6156 77 IEQNGKGPVELFLP-NIMPALLQAYENQDSCVRKCSVFCMVALY--------KEFGESVLSPYINKLSGAKL 139 (176)
Q Consensus 77 v~~~~~d~l~~~L~-~iiP~l~~a~~~~~s~VRKaaVfClVal~--------~~lGe~~l~P~L~~L~~~k~ 139 (176)
. ..+.++..-..+ .-+|-+++-..+++-+||..||+.|=.+- .+++...+.|.|.-|.+++.
T Consensus 143 a-SGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~ 213 (526)
T COG5064 143 A-SGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAI 213 (526)
T ss_pred c-cCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccc
Confidence 5 444455544443 67899999999999999999999885432 46677678888877776654
No 209
>KOG2062|consensus
Probab=27.61 E-value=2.4e+02 Score=28.40 Aligned_cols=120 Identities=14% Similarity=0.152 Sum_probs=72.2
Q ss_pred HHHHHHHH-hcChhHHHHHHHH-----HhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHH
Q psy6156 21 IMPALLQA-YENQDSCVRKCSV-----FCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMP 94 (176)
Q Consensus 21 iL~~LLd~-~~d~e~~VrkAav-----~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP 94 (176)
++..||+- -.|.++=||+||+ ++.=+|++|.+++.++-.+-++-..-++=-.|.=.+-.-+-.+ -+-
T Consensus 555 air~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e-------Ai~ 627 (929)
T KOG2062|consen 555 AIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE-------AIN 627 (929)
T ss_pred hHHHhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH-------HHH
Confidence 34455554 2366777888874 3345899999999988877776666654444443332222111 222
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHHhhhcc
Q psy6156 95 ALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQT 151 (176)
Q Consensus 95 ~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi~R~~~ 151 (176)
-|.--+.|+..-||+.|.-.+--+-..--+. +.|.. ++-.++|..+-.++.+.
T Consensus 628 lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~-~~pkv---~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 628 LLEPLTSDPVDFVRQGALIALAMIMIQQTEQ-LCPKV---NGFRKQLEKVINDKHED 680 (929)
T ss_pred HHhhhhcChHHHHHHHHHHHHHHHHHhcccc-cCchH---HHHHHHHHHHhhhhhhH
Confidence 2333445889999999987765444444444 66554 44556667776666553
No 210
>KOG4653|consensus
Probab=27.52 E-value=6.9e+02 Score=25.65 Aligned_cols=126 Identities=17% Similarity=0.301 Sum_probs=82.4
Q ss_pred hHHHHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHH-----HHhh-cC------hHHHHHhhhhhhhc-cCcchHHHH
Q psy6156 3 TKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS-----VFCM-VA------LYKVTRILFPLIIA-EEHPINLVA 69 (176)
Q Consensus 3 t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAa-----v~~~-v~------p~~~l~vL~p~l~~-~~~~~~~~a 69 (176)
.+++++.| |.+..|++.++...+-.-.|.+..-|-.+ ..|. .+ ...|+..+..+..+ +..+.+-+|
T Consensus 831 ~k~~qa~G-el~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaA 909 (982)
T KOG4653|consen 831 LKVAQALG-ELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAA 909 (982)
T ss_pred HHHHHHhc-cHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHH
Confidence 46777777 77889999999988888888876666543 1111 11 22345444445544 457888899
Q ss_pred HHHHHHHHhhcCCchHH---hhhchHHHH-HHHhhcCCChhHHHHHHHHHHHHHHHhcCCcccc
Q psy6156 70 IKMLTKVIEQNGKGPVE---LFLPNIMPA-LLQAYENQDSCVRKCSVFCMVALYKEFGESVLSP 129 (176)
Q Consensus 70 LkmLtklv~~~~~d~l~---~~L~~iiP~-l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P 129 (176)
+.++..+....+.|-+. .++-|..-. .-..-.|..-.+|.-|=.|+-++-..+.+.+.-|
T Consensus 910 v~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l~n~~~~p 973 (982)
T KOG4653|consen 910 VHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAALENDDDSP 973 (982)
T ss_pred HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcccCh
Confidence 99999999777765442 122222222 2223346666788999999999999988775544
No 211
>KOG1062|consensus
Probab=27.50 E-value=1.4e+02 Score=29.96 Aligned_cols=66 Identities=14% Similarity=0.368 Sum_probs=41.5
Q ss_pred hhHHHHHHHHhcChhHHHHHHHHHhhcChHH--------HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchH
Q psy6156 19 PNIMPALLQAYENQDSCVRKCSVFCMVALYK--------VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPV 85 (176)
Q Consensus 19 ~~iL~~LLd~~~d~e~~VrkAav~~~v~p~~--------~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l 85 (176)
..+.|-+-+..++.++.|||-|+.|.+...+ .+..-...+.+...=...+.+.++++++ ..++|.+
T Consensus 141 rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c-~~~~~~l 214 (866)
T KOG1062|consen 141 RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELC-KISPDAL 214 (866)
T ss_pred HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHH-hcCHHHH
Confidence 3455555566667889999988777654433 2222223455556666778899999999 4455444
No 212
>KOG0168|consensus
Probab=27.21 E-value=83 Score=31.93 Aligned_cols=73 Identities=14% Similarity=0.254 Sum_probs=49.1
Q ss_pred HhCCCchhchHhhHHHHHHHHhcCh-hHHHHHHH------HHhhcChHHHHHh---------hhhhhhccCcchHHHHHH
Q psy6156 8 QNGKGPVELFLPNIMPALLQAYENQ-DSCVRKCS------VFCMVALYKVTRI---------LFPLIIAEEHPINLVAIK 71 (176)
Q Consensus 8 ~~~~~~~e~~l~~iL~~LLd~~~d~-e~~VrkAa------v~~~v~p~~~l~v---------L~p~l~~~~~~~~~~aLk 71 (176)
.+|+|.++.|...++|-|++.|... +--||--. +.+...++.+-.+ ++-.+.+.+..+.++||.
T Consensus 543 ~nqpel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQ 622 (1051)
T KOG0168|consen 543 KNQPELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQ 622 (1051)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHH
Confidence 3567888999999999999999975 44444322 2223345543333 344567778888999999
Q ss_pred HHHHHHhhc
Q psy6156 72 MLTKVIEQN 80 (176)
Q Consensus 72 mLtklv~~~ 80 (176)
|..-+.+++
T Consensus 623 vAEiLmeKl 631 (1051)
T KOG0168|consen 623 VAEILMEKL 631 (1051)
T ss_pred HHHHHHHHh
Confidence 887666543
No 213
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=26.68 E-value=1.7e+02 Score=26.36 Aligned_cols=49 Identities=8% Similarity=0.150 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHH
Q psy6156 67 LVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCM 115 (176)
Q Consensus 67 ~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfCl 115 (176)
+.-|+.+..+++..++++.......+..-+.++..++...|...|.+..
T Consensus 273 v~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w 321 (409)
T PF01603_consen 273 VLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFW 321 (409)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999887654
No 214
>KOG2549|consensus
Probab=26.48 E-value=5.9e+02 Score=24.57 Aligned_cols=104 Identities=13% Similarity=0.246 Sum_probs=66.9
Q ss_pred HHHHHHHHhcChhHHHHHHHHHhh---cChHHHHHhhhhhhhcc--------CcchHHHHHHHHHHHHhhcCCchHHhhh
Q psy6156 21 IMPALLQAYENQDSCVRKCSVFCM---VALYKVTRILFPLIIAE--------EHPINLVAIKMLTKVIEQNGKGPVELFL 89 (176)
Q Consensus 21 iL~~LLd~~~d~e~~VrkAav~~~---v~p~~~l~vL~p~l~~~--------~~~~~~~aLkmLtklv~~~~~d~l~~~L 89 (176)
..-+++++....++..|++|+-++ --.++.+..+..+|..+ +.......++|...+. +.+.=-++..|
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl-~Np~i~lepYl 286 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLETDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLL-DNPNIFLEPYL 286 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHh-cCCccchhhHH
Confidence 445555555567778888775532 23345555555555433 3344445666666666 55555566666
Q ss_pred chHHHHHHHh----------hcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156 90 PNIMPALLQA----------YENQDSCVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 90 ~~iiP~l~~a----------~~~~~s~VRKaaVfClVal~~~lGe~ 125 (176)
-.+||.+..| ..|-...+|+-|-+-+.-+|..+|..
T Consensus 287 h~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~ 332 (576)
T KOG2549|consen 287 HQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTL 332 (576)
T ss_pred HHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhH
Confidence 6666666554 45667889999999999999999987
No 215
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=25.94 E-value=5.1e+02 Score=23.64 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=61.7
Q ss_pred hHHHHHhCCCchhchHhhHHHHHHHHhcCh--hHHHHHH-----HH--HhhcChHH---HHHhhhhhhhccCcchHHHHH
Q psy6156 3 TKVIEQNGKGPVELFLPNIMPALLQAYENQ--DSCVRKC-----SV--FCMVALYK---VTRILFPLIIAEEHPINLVAI 70 (176)
Q Consensus 3 t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~--e~~VrkA-----av--~~~v~p~~---~l~vL~p~l~~~~~~~~~~aL 70 (176)
+.++.-+.+-.-++.+..++..++...... ++-++.+ ++ +..+|.+. |+.+|+.+.+..++ ...+-
T Consensus 159 ~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l--~~~~w 236 (464)
T PF11864_consen 159 VNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSL--CKPSW 236 (464)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccccc--chhHH
Confidence 344444444434455555555555553321 1222221 12 22455543 77777777665532 33477
Q ss_pred HHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156 71 KMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 71 kmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~ 125 (176)
+.+..+++..........|=++++.=-... .....+-.-|||.+-.+-..-|++
T Consensus 237 ~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~-~~~~~~lRGAv~~l~~ll~~~~~~ 290 (464)
T PF11864_consen 237 RTMRNLLKSHLGHSAIRTLCDILRSPDPQN-KRDINVLRGAVFFLRMLLWGSGEQ 290 (464)
T ss_pred HHHHHHHcCccHHHHHHHHHHHHcccCccc-cccHHHHhhHHHHHHHHHhccccC
Confidence 777777755444444455555551111111 223444458889888877777666
No 216
>PF04699 P16-Arc: ARP2/3 complex 16 kDa subunit (p16-Arc); InterPro: IPR006789 The Arp2/3 protein complex has been implicated in the control of actin polymerisation. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc. The precise function of p16-Arc is currently unknown. Its structure consists of a single domain containing a bundle of seven alpha helices [, ].; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_G 1TYQ_G 1U2V_G 2P9U_G 2P9L_G 1K8K_G 3DXM_G 2P9N_G 3DXK_G 2P9I_G ....
Probab=25.81 E-value=95 Score=24.61 Aligned_cols=53 Identities=13% Similarity=0.223 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHHhhhcccCCCCCC
Q psy6156 106 CVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSSSVPT 158 (176)
Q Consensus 106 ~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi~R~~~~~~~~~~ 158 (176)
.+...+....+.+-..+-..+|.+.+.+|+..|+-+|==||-|.....++.++
T Consensus 70 ~~K~~~~~~Vl~vL~s~k~sdI~~~v~~L~~~~~D~LMKYiYkg~~~~~~~s~ 122 (152)
T PF04699_consen 70 AVKDRALQLVLEVLTSIKSSDIENAVKSLDSDQQDILMKYIYKGMESPSENSS 122 (152)
T ss_dssp HHHHHHHHHHHHHHHCS-GGGHHHHHCCS-HHHHHHHHHHHHHHTTS--TTHH
T ss_pred chHHHHHHHHHHHHHHccHHHHHHHHHhCCHHHHhHHHHHHHHhccCccCccH
Confidence 77777777777777777777899999999999999999999999877665444
No 217
>KOG1848|consensus
Probab=25.45 E-value=9e+02 Score=26.29 Aligned_cols=135 Identities=18% Similarity=0.179 Sum_probs=85.7
Q ss_pred hchHhhHHHHHHHHhcChhHHHHHHH---HHhh-------cCh--H--HHHHhhhhhhh------ccCcchHH-------
Q psy6156 15 ELFLPNIMPALLQAYENQDSCVRKCS---VFCM-------VAL--Y--KVTRILFPLII------AEEHPINL------- 67 (176)
Q Consensus 15 e~~l~~iL~~LLd~~~d~e~~VrkAa---v~~~-------v~p--~--~~l~vL~p~l~------~~~~~~~~------- 67 (176)
|.....++-.|.++..|.--.||.-| +|.. +++ . -|+.+..|.+. .++|..+.
T Consensus 992 e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwte 1071 (1610)
T KOG1848|consen 992 EVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTE 1071 (1610)
T ss_pred hHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhh
Confidence 34455677788899999877777755 4433 344 2 27889999885 34565443
Q ss_pred ---HHHHHHHHHHhhcCCc-----hHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHH--
Q psy6156 68 ---VAIKMLTKVIEQNGKG-----PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGA-- 137 (176)
Q Consensus 68 ---~aLkmLtklv~~~~~d-----~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~-- 137 (176)
..|--+.|++...=++ ........++--+.++.-|.++++.-+|+.|+=++-.-.-+ +..||..
T Consensus 1072 t~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~sii~------~~~ln~~~~ 1145 (1610)
T KOG1848|consen 1072 TSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSIIE------FGKLNATFT 1145 (1610)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHHhh------hccccchHH
Confidence 3555666666443333 22445556666777888899999999999998776532221 1334444
Q ss_pred -HHHHHHHHHhhhcccCCC
Q psy6156 138 -KLKLLQLYIKRSQTHSSS 155 (176)
Q Consensus 138 -k~kLl~iYi~R~~~~~~~ 155 (176)
|.+++.+-++|-=+..++
T Consensus 1146 ~k~n~vf~~y~~~~~~~ss 1164 (1610)
T KOG1848|consen 1146 LKINLVFINYGRFCEVSSS 1164 (1610)
T ss_pred HHhhhhhhhHhhhcccccc
Confidence 667777777776544444
No 218
>KOG1991|consensus
Probab=25.34 E-value=2.8e+02 Score=28.49 Aligned_cols=85 Identities=26% Similarity=0.342 Sum_probs=64.4
Q ss_pred ccCcchHHHHHHHHHHHHhh-cCC-chHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHH
Q psy6156 60 AEEHPINLVAIKMLTKVIEQ-NGK-GPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGA 137 (176)
Q Consensus 60 ~~~~~~~~~aLkmLtklv~~-~~~-d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~ 137 (176)
+.+-|..+-|--.|.-++.. -.. +-+.+++|.+|-.+..-++..+.+.=- +||=++....||+ +.||=.+|.+
T Consensus 514 d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt---~vme~iV~~fseE-lsPfA~eL~q- 588 (1010)
T KOG1991|consen 514 DNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLT---NVMEKIVCKFSEE-LSPFAVELCQ- 588 (1010)
T ss_pred CCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHH---HHHHHHHHHHHHh-hchhHHHHHH-
Confidence 55667776544444444422 223 338999999999999999999998755 8888999999999 9999888864
Q ss_pred HHHHHHHHHhhhcc
Q psy6156 138 KLKLLQLYIKRSQT 151 (176)
Q Consensus 138 k~kLl~iYi~R~~~ 151 (176)
.|.+.+.+=.+.
T Consensus 589 --~La~~F~k~l~~ 600 (1010)
T KOG1991|consen 589 --NLAETFLKVLQT 600 (1010)
T ss_pred --HHHHHHHHHHhc
Confidence 678888888886
No 219
>KOG1943|consensus
Probab=25.26 E-value=3.6e+02 Score=28.10 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCCh--hHHHHHHHHHHHHHHHhcCCcccccc
Q psy6156 66 NLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDS--CVRKCSVFCMVALYKEFGESVLSPYI 131 (176)
Q Consensus 66 ~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s--~VRKaaVfClVal~~~lGe~~l~P~L 131 (176)
+.+.+..+.+++++.+.+.+..+.+...-.+-.++-+.++ -+|| |+|+++..+|=--+.|.-
T Consensus 233 ~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llrK----llvKl~QRiGlv~l~prs 296 (1133)
T KOG1943|consen 233 KLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLRK----LLVKLVQRIGLVSLKPRS 296 (1133)
T ss_pred HHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHHH----HHHHHHHHhhheecCCCC
Confidence 4899999999999999998888888888888777665554 5555 888889999987555554
No 220
>KOG2081|consensus
Probab=25.18 E-value=4.5e+02 Score=25.29 Aligned_cols=82 Identities=13% Similarity=0.151 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhcChHHHHHhhhhhhhc--cCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcC--CChhHHH
Q psy6156 34 SCVRKCSVFCMVALYKVTRILFPLIIA--EEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYEN--QDSCVRK 109 (176)
Q Consensus 34 ~~VrkAav~~~v~p~~~l~vL~p~l~~--~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~--~~s~VRK 109 (176)
+++++ ++-++.-..|++.+.-.+.+ ..|..-.++|+.|..+++..++++- ++||.+.+.+-+ ..+.+|-
T Consensus 374 dvl~D--v~~iigs~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~-----~i~pevl~~i~nlp~Q~~~~~ 446 (559)
T KOG2081|consen 374 DVLKD--VAFIIGSDECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEEN-----TIMPEVLKLICNLPEQAPLRY 446 (559)
T ss_pred HHHHH--HHHHhCcHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCcccc-----chHHHHHHHHhCCccchhHHH
Confidence 44444 44457777788877777654 5799999999999999988888764 566666665543 2333777
Q ss_pred HHHHHHHHHHHHh
Q psy6156 110 CSVFCMVALYKEF 122 (176)
Q Consensus 110 aaVfClVal~~~l 122 (176)
+++-=+-++.-.+
T Consensus 447 ts~ll~g~~~ew~ 459 (559)
T KOG2081|consen 447 TSILLLGEYSEWV 459 (559)
T ss_pred HHHHHHHHHHHHH
Confidence 7665444444333
No 221
>KOG2044|consensus
Probab=25.00 E-value=24 Score=35.16 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCccccccccCc---HHHHHHHHHHHh
Q psy6156 115 MVALYKEFGESVLSPYINKLS---GAKLKLLQLYIK 147 (176)
Q Consensus 115 lVal~~~lGe~~l~P~L~~L~---~~k~kLl~iYi~ 147 (176)
-|=||+-+||+ +.|||+.|. ++=-+|++||-+
T Consensus 332 wVF~CFFvGND-FLPHlPsLeIRegAId~L~~iyk~ 366 (931)
T KOG2044|consen 332 WVFLCFFVGND-FLPHLPSLEIREGAIDRLMEIYKK 366 (931)
T ss_pred eEEEEeeecCc-cCCCCCchhhhhcHHHHHHHHHHH
Confidence 35577777777 777777775 344566777754
No 222
>KOG1222|consensus
Probab=24.72 E-value=2.4e+02 Score=27.23 Aligned_cols=74 Identities=12% Similarity=0.135 Sum_probs=42.1
Q ss_pred hcChHHHHHhhhhhhhccC--cchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy6156 44 MVALYKVTRILFPLIIAEE--HPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVA 117 (176)
Q Consensus 44 ~v~p~~~l~vL~p~l~~~~--~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVa 117 (176)
.++|..++..|..+++..+ ...-+-.|-..-.++.+-...+++-.=...--.+++-|||.+.++||-+=.|+--
T Consensus 585 Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdI 660 (791)
T KOG1222|consen 585 LLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDI 660 (791)
T ss_pred HhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4677777777777776542 2222222222333332322222221122334458899999999999998888753
No 223
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=24.70 E-value=3.8e+02 Score=24.81 Aligned_cols=66 Identities=24% Similarity=0.273 Sum_probs=43.6
Q ss_pred hcChHHHHHhhhhhhh-ccCc--chHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhc--CCChhHHHHHHHHHHH
Q psy6156 44 MVALYKVTRILFPLII-AEEH--PINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYE--NQDSCVRKCSVFCMVA 117 (176)
Q Consensus 44 ~v~p~~~l~vL~p~l~-~~~~--~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~--~~~s~VRKaaVfClVa 117 (176)
.......+.+|.|++. +.+. ...++|+..|.++.+. .++.+ -+.+..-|. +..+|||=||+.-++.
T Consensus 472 N~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~-~p~~v-------~~~l~~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 472 NAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKR-DPRKV-------QEVLLPIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred ccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHh-CchHH-------HHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 3455678889999987 2222 3566889999888743 33333 333444444 4678999999988774
No 224
>KOG2274|consensus
Probab=24.06 E-value=1.3e+02 Score=30.69 Aligned_cols=94 Identities=17% Similarity=0.202 Sum_probs=54.8
Q ss_pred ChhHHHHHhCCCchhchH-------------hhHHHHHHHHhcChhHHHHHHH-----HHhhcChHHHHHhhhh----hh
Q psy6156 1 MLTKVIEQNGKGPVELFL-------------PNIMPALLQAYENQDSCVRKCS-----VFCMVALYKVTRILFP----LI 58 (176)
Q Consensus 1 ~~t~~~e~~~~~~~e~~l-------------~~iL~~LLd~~~d~e~~VrkAa-----v~~~v~p~~~l~vL~p----~l 58 (176)
++.+.++++..+.+|.|= -..+++++. |.+.-+|.++ ....+.-..+++-|.| .+
T Consensus 61 ~L~~yie~hW~~~~E~fr~~~~~~e~~K~~IRe~Ll~~l~---~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l 137 (1005)
T KOG2274|consen 61 LLKRYIEKHWSPNFEAFRYPLIVSEEVKALIREQLLNLLD---DSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLL 137 (1005)
T ss_pred HHHHHHHHhCCChHhhccCCCcccHHHHHHHHHHHHhhhh---ccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHH
Confidence 356777777555554432 334444444 6666666653 2223333345555555 45
Q ss_pred hccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHH
Q psy6156 59 IAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALL 97 (176)
Q Consensus 59 ~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~ 97 (176)
++++...-.+|++.|..+......++.-...+-.+|...
T Consensus 138 ~~~n~n~i~~am~vL~el~~ev~~ee~~~~~~~~l~~m~ 176 (1005)
T KOG2274|consen 138 SSGNENSIHGAMRVLAELSDEVDVEEMFFVGPVSLAEMY 176 (1005)
T ss_pred hccchhhhhhHHHHHHHHHHHHHHHHHhcccccchhhhh
Confidence 777888889999999999877665555444444444333
No 225
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=24.03 E-value=1.8e+02 Score=25.31 Aligned_cols=67 Identities=21% Similarity=0.407 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhhcCCchH--HhhhchHHHHHHHhhcCCChhHHHHHHH-HHHHHHHHhcCCcccccccc
Q psy6156 66 NLVAIKMLTKVIEQNGKGPV--ELFLPNIMPALLQAYENQDSCVRKCSVF-CMVALYKEFGESVLSPYINK 133 (176)
Q Consensus 66 ~~~aLkmLtklv~~~~~d~l--~~~L~~iiP~l~~a~~~~~s~VRKaaVf-ClVal~~~lGe~~l~P~L~~ 133 (176)
+-..||++...+++.+..+. ...+|.++-.+..-|.+..++.|-+-|. |+..+..++|+. +.|+++.
T Consensus 44 KkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~-~~~~v~~ 113 (319)
T PF08767_consen 44 KKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGEL-IQPQVPQ 113 (319)
T ss_dssp HHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGG-CCCCHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHh-hhhhHHH
Confidence 44678999999866652222 2334555555666899999999988665 566677889987 7777653
No 226
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=23.63 E-value=1.9e+02 Score=25.91 Aligned_cols=59 Identities=25% Similarity=0.330 Sum_probs=40.9
Q ss_pred Hhhhhhhh--ccCcchH-HHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHH
Q psy6156 52 RILFPLII--AEEHPIN-LVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFC 114 (176)
Q Consensus 52 ~vL~p~l~--~~~~~~~-~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfC 114 (176)
..+.|-++ ....|.. ..|||.+...-..++++ .+.+++|.++..+.+++.-|+-=|-.|
T Consensus 308 ~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~----~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 308 QHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKE----QLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HH----HHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHH----HHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence 35566666 1234544 45999999999887764 567789999999999998888766554
No 227
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=23.26 E-value=8.3e+02 Score=26.26 Aligned_cols=88 Identities=19% Similarity=0.327 Sum_probs=56.7
Q ss_pred cChhHHHHHHH------HHhhcChH---HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhh
Q psy6156 30 ENQDSCVRKCS------VFCMVALY---KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAY 100 (176)
Q Consensus 30 ~d~e~~VrkAa------v~~~v~p~---~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~ 100 (176)
..++..|+.-+ +|..+.-+ .++..|..++.++..+.--+||..|.++++. .++.+.++ ..++-++.+.+
T Consensus 445 ~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~-~~~~l~~f-a~~l~giLD~l 522 (1426)
T PF14631_consen 445 RSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEK-NPSELQPF-ATFLKGILDYL 522 (1426)
T ss_dssp TSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--HHHHHHT-HHHHHGGGGGG
T ss_pred hCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-cHHHHHHH-HHHHHHHHHHH
Confidence 45577777753 66666654 3888898999777666666899999999954 55555444 55666677777
Q ss_pred cCC-ChhHHHH-HHHHHHHHH
Q psy6156 101 ENQ-DSCVRKC-SVFCMVALY 119 (176)
Q Consensus 101 ~~~-~s~VRKa-aVfClVal~ 119 (176)
++- ...+||. -|+|.+++-
T Consensus 523 ~~Ls~~qiR~lf~il~~La~~ 543 (1426)
T PF14631_consen 523 DNLSLQQIRKLFDILCTLAFS 543 (1426)
T ss_dssp GG--HHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhcC
Confidence 765 5678885 355555543
No 228
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=23.25 E-value=7.2e+02 Score=24.58 Aligned_cols=92 Identities=18% Similarity=0.344 Sum_probs=55.4
Q ss_pred HHHHHhcChhHHHHHHHHHhhcChHHHHHhhhhh------h-------hccCcchHHHHHHHHHHHHhhcCC-chHHhhh
Q psy6156 24 ALLQAYENQDSCVRKCSVFCMVALYKVTRILFPL------I-------IAEEHPINLVAIKMLTKVIEQNGK-GPVELFL 89 (176)
Q Consensus 24 ~LLd~~~d~e~~VrkAav~~~v~p~~~l~vL~p~------l-------~~~~~~~~~~aLkmLtklv~~~~~-d~l~~~L 89 (176)
-.++.|.|.++..| +.|+.+...+++.+=.+ + .+..........|.+..++.+.+. +.+...+
T Consensus 279 vfvsRy~Dv~d~IR---v~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~ 355 (740)
T COG5537 279 VFVSRYIDVDDVIR---VLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV 355 (740)
T ss_pred HHhhhccchhHHHH---HHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 34567778788888 55555555444433333 2 233346667788999999877764 3344555
Q ss_pred chHHHHHHH-hhcCCChhHHHHHHHHHHHHH
Q psy6156 90 PNIMPALLQ-AYENQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 90 ~~iiP~l~~-a~~~~~s~VRKaaVfClVal~ 119 (176)
.-+.--+.+ +--|.+. ||-+++.-+-++-
T Consensus 356 eRFk~rILE~~r~D~d~-VRi~sik~l~~lr 385 (740)
T COG5537 356 ERFKDRILEFLRTDSDC-VRICSIKSLCYLR 385 (740)
T ss_pred HHHHHHHHHHHhhccch-hhHHHHHHHHHHH
Confidence 555555443 3345555 8888887666553
No 229
>PHA01632 hypothetical protein
Probab=22.87 E-value=58 Score=21.94 Aligned_cols=27 Identities=37% Similarity=0.615 Sum_probs=23.6
Q ss_pred HHHHhCCCchhchHhhHHHHHHHHhcC
Q psy6156 5 VIEQNGKGPVELFLPNIMPALLQAYEN 31 (176)
Q Consensus 5 ~~e~~~~~~~e~~l~~iL~~LLd~~~d 31 (176)
++|+.+..|.++-+.-++|++|.-|.+
T Consensus 20 lieqvp~kpteeelrkvlpkilkdyan 46 (64)
T PHA01632 20 LIEQVPQKPTEEELRKVLPKILKDYAN 46 (64)
T ss_pred ehhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 478888899999999999999988865
No 230
>KOG2022|consensus
Probab=22.57 E-value=1.7e+02 Score=29.70 Aligned_cols=81 Identities=17% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhcc-CcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcc
Q psy6156 49 KVTRILFPLIIAE-EHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVL 127 (176)
Q Consensus 49 ~~l~vL~p~l~~~-~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l 127 (176)
+++++.+.+=-++ +.+..-.+...+..+.+.+..... .|+--+|.|+++.|+++-++.+..- +=.+|.-..++ +
T Consensus 508 rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~--~ln~sl~~L~~~Lh~sk~s~q~i~t--l~tlC~~C~~~-L 582 (982)
T KOG2022|consen 508 RLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPM--YLNPSLPLLFQGLHNSKESEQAIST--LKTLCETCPES-L 582 (982)
T ss_pred HHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCc--ccCchHHHHHHHhcCchHHHHHHHH--HHHHHHhhhhh-C
Q ss_pred ccccccC
Q psy6156 128 SPYINKL 134 (176)
Q Consensus 128 ~P~L~~L 134 (176)
.||+.++
T Consensus 583 ~py~d~~ 589 (982)
T KOG2022|consen 583 DPYADQF 589 (982)
T ss_pred chHHHHH
No 231
>KOG4524|consensus
Probab=22.41 E-value=1.6e+02 Score=30.14 Aligned_cols=56 Identities=7% Similarity=0.179 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156 69 AIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 69 aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~ 125 (176)
+++-++....-.+ ++....|-..+=.+...+-+++..|+-.|++|+++++..++-.
T Consensus 568 ~ld~I~~~a~~~g-~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~ 623 (1014)
T KOG4524|consen 568 VLDSIGTIAAVMG-EEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYG 623 (1014)
T ss_pred hhhhhHHHHHHhH-HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCC
Confidence 4555555553323 3344444444444566778899999999999999999999986
No 232
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=22.25 E-value=3.6e+02 Score=26.60 Aligned_cols=68 Identities=13% Similarity=0.171 Sum_probs=40.6
Q ss_pred HHHhhhhhhhccC--cchHHHHHHHHHHHHhh-cCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy6156 50 VTRILFPLIIAEE--HPINLVAIKMLTKVIEQ-NGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVAL 118 (176)
Q Consensus 50 ~l~vL~p~l~~~~--~~~~~~aLkmLtklv~~-~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal 118 (176)
++..|..++++.+ .-.-+-.+-.+-+++.+ -+.+.+... .++...+++.|||++++|||.+=.||=-+
T Consensus 577 li~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~-~~~~~ylidL~~d~N~~ir~~~d~~Ldii 647 (708)
T PF05804_consen 577 LIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKE-TEIPAYLIDLMHDKNAEIRKVCDNALDII 647 (708)
T ss_pred hHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhc-cchHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 5666667775542 22233334444444422 112222222 46777899999999999999988887533
No 233
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=21.91 E-value=4.5e+02 Score=26.00 Aligned_cols=100 Identities=18% Similarity=0.174 Sum_probs=65.1
Q ss_pred Cch-hchHhhHHHHHHHHhcChhHHHHHHHHHh----hcChHHHHHhhhhhhhcc----CcchHHHHHHHHHHHHhhcCC
Q psy6156 12 GPV-ELFLPNIMPALLQAYENQDSCVRKCSVFC----MVALYKVTRILFPLIIAE----EHPINLVAIKMLTKVIEQNGK 82 (176)
Q Consensus 12 ~~~-e~~l~~iL~~LLd~~~d~e~~VrkAav~~----~v~p~~~l~vL~p~l~~~----~~~~~~~aLkmLtklv~~~~~ 82 (176)
+.+ |...-.+.-+++..+.|++..+|++.-.. +.=.+.++-.-..++++- +.-.+--||+.|..++..
T Consensus 56 e~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvlm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~--- 132 (898)
T COG5240 56 ELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDVLMGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDG--- 132 (898)
T ss_pred ccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhhhHHHHHHHHhhccCCccccccHHHHHHHHhcCc---
Confidence 434 34445677788999999999999875111 112244555555555332 223555799999998843
Q ss_pred chHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy6156 83 GPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVAL 118 (176)
Q Consensus 83 d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal 118 (176)
+..+++=--+.+|+-++++.+|-||+-..-.+
T Consensus 133 ----~tv~~~er~l~~a~Vs~~~a~~saalv~aYhL 164 (898)
T COG5240 133 ----ETVYDFERYLNQAFVSTSMARRSAALVVAYHL 164 (898)
T ss_pred ----chhhhHHHHhhhhccccchhhhhhHHHHhhhh
Confidence 33456666678999999999999987554433
No 234
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=21.76 E-value=3.5e+02 Score=24.55 Aligned_cols=89 Identities=19% Similarity=0.313 Sum_probs=50.4
Q ss_pred hHHHHHh---CCCchhchHhhHHHHHHHHhc--ChhHHHHHHH------HH--hhc-----ChHHHHHhhhhhhhccCcc
Q psy6156 3 TKVIEQN---GKGPVELFLPNIMPALLQAYE--NQDSCVRKCS------VF--CMV-----ALYKVTRILFPLIIAEEHP 64 (176)
Q Consensus 3 t~~~e~~---~~~~~e~~l~~iL~~LLd~~~--d~e~~VrkAa------v~--~~v-----~p~~~l~vL~p~l~~~~~~ 64 (176)
.+++++. ..+...-.+..++|.+++|+. |.+..+|+-+ ++ |.+ +-+.+-.++...+++----
T Consensus 236 ~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfvqk~l~~ 315 (373)
T PF14911_consen 236 QQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGEPREQLTSVLRSFVQKYLAH 315 (373)
T ss_pred HHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcchHHHHHHHHHHHHHHHHhhh
Confidence 3455552 333345677789999999986 4344455432 11 111 2234666777766543222
Q ss_pred hHHHHHHHHHHHHhhcCCchHHhhhchH
Q psy6156 65 INLVAIKMLTKVIEQNGKGPVELFLPNI 92 (176)
Q Consensus 65 ~~~~aLkmLtklv~~~~~d~l~~~L~~i 92 (176)
-..-..++|.++. .++++-+...+|.+
T Consensus 316 ~t~~~f~~l~~vA-~l~p~lV~~Lip~i 342 (373)
T PF14911_consen 316 YTYQYFQFLEKVA-ELDPQLVISLIPTI 342 (373)
T ss_pred hhHHHHHHHHHHH-HhCHHHHHHHHHHH
Confidence 2234688888888 67777665544443
No 235
>KOG1949|consensus
Probab=21.36 E-value=4.1e+02 Score=26.86 Aligned_cols=49 Identities=18% Similarity=0.022 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156 68 VAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 68 ~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~ 119 (176)
+.+|...+.-+-+++..+.+.|..|+--+ .+|+.|+||=+++.|+..+-
T Consensus 243 gv~k~~s~fWe~iP~~i~~~ll~kI~d~~---a~dt~s~VR~svf~gl~~~l 291 (1005)
T KOG1949|consen 243 GVCKITSKFWEMIPPTILIDLLKKITDEL---AFDTSSDVRCSVFKGLPMIL 291 (1005)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHh---hhccchheehhHhcCcHHHH
Confidence 45555566666666666655555554433 35666777777777776654
No 236
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=21.22 E-value=5.1e+02 Score=22.97 Aligned_cols=106 Identities=15% Similarity=0.198 Sum_probs=76.4
Q ss_pred hhchH----hhHHHHHHHHhcCh------hHHHHHHH----HHhh-cChHHHHHhhhhhhhccCcchHHHHHHHHHHHHh
Q psy6156 14 VELFL----PNIMPALLQAYENQ------DSCVRKCS----VFCM-VALYKVTRILFPLIIAEEHPINLVAIKMLTKVIE 78 (176)
Q Consensus 14 ~e~~l----~~iL~~LLd~~~d~------e~~VrkAa----v~~~-v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~ 78 (176)
...|+ ..++-.|+++|++. +.+.|++. ++.. +. ..++.-+..+++...+-+..-|...++.+..
T Consensus 115 ~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~~~iL~-~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt 193 (335)
T PF08569_consen 115 TVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESLAKIILY-SECFWKFFKYVQLPNFDIASDAFSTFKELLT 193 (335)
T ss_dssp HHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHHHHHHT-SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHHHHHhC-cHHHHHHHHHhcCCccHhHHHHHHHHHHHHh
Confidence 44455 46888999999976 57888864 2221 12 2366667778888888888889999998874
Q ss_pred h---cCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156 79 Q---NGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 79 ~---~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~ 120 (176)
+ +..+-+....+.++-...+.+.+.+=-.|..+++=|-++-.
T Consensus 194 ~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~elll 238 (335)
T PF08569_consen 194 RHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLL 238 (335)
T ss_dssp SSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHH
Confidence 4 23456677788899988899988888888888887777653
No 237
>KOG4346|consensus
Probab=20.78 E-value=3.9e+02 Score=26.71 Aligned_cols=82 Identities=13% Similarity=0.193 Sum_probs=59.4
Q ss_pred hhHHHHHhCCCchhchHhhHHHHHHHHhcCh------hHHHHHHHHHhhcChHHHHHhhhhhhhccC--cchHH--HHHH
Q psy6156 2 LTKVIEQNGKGPVELFLPNIMPALLQAYENQ------DSCVRKCSVFCMVALYKVTRILFPLIIAEE--HPINL--VAIK 71 (176)
Q Consensus 2 ~t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~------e~~VrkAav~~~v~p~~~l~vL~p~l~~~~--~~~~~--~aLk 71 (176)
++++|.+.+.. +-++-+.++..+|+.-+.- +-.++..+.+|...|.-|.+.|+..+-..+ |-.++ ..+.
T Consensus 533 ae~LI~r~pt~-~rq~A~eLlq~lLhLqn~f~~~~F~etq~~aiVa~~vT~p~pcapylcrqf~a~n~~YS~rQRiliL~ 611 (849)
T KOG4346|consen 533 AENLINRRPTG-FRQIAEELLQRLLHLQNNFGTPKFKETQVDAIVAACVTQPPPCAPYLCRQFIAPNQGYSIRQRILILS 611 (849)
T ss_pred HHHHHHhcccc-cHHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHHHhcCCCcchhHHHHHhhcCCCcccHHHHHHHHH
Confidence 46788877755 7788888999999877643 344666667778888889999999875554 65554 4555
Q ss_pred HHHHHHhhcCCch
Q psy6156 72 MLTKVIEQNGKGP 84 (176)
Q Consensus 72 mLtklv~~~~~d~ 84 (176)
.++-....++.|+
T Consensus 612 vi~lAA~els~dd 624 (849)
T KOG4346|consen 612 VIHLAADELSADD 624 (849)
T ss_pred HHHHHHHHhCccc
Confidence 5888888887743
No 238
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=20.73 E-value=6.6e+02 Score=23.40 Aligned_cols=78 Identities=15% Similarity=0.206 Sum_probs=48.2
Q ss_pred ChhHHHHHHHHHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhc-CCChhHHH
Q psy6156 31 NQDSCVRKCSVFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYE-NQDSCVRK 109 (176)
Q Consensus 31 d~e~~VrkAav~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~-~~~s~VRK 109 (176)
.++..|.+ ++.++.--.+...|.-+|+.++.....+.+..|.. ..+||.|+..++ +.++++-.
T Consensus 18 ~~~~~v~~--llkHI~~~~ImDlLLklIs~d~~~~~~~ilewL~~--------------q~LI~~Li~~L~p~~~~~~q~ 81 (475)
T PF04499_consen 18 SQPNFVDN--LLKHIDTPAIMDLLLKLISTDKPESPTGILEWLAE--------------QNLIPRLIDLLSPSYSSDVQS 81 (475)
T ss_pred hCccHHHH--HHHhcCCcHHHHHHHHHHccCcccchHHHHHHHHH--------------hCHHHHHHHHhCCCCCHHHHH
Confidence 44556665 66677766777778888877776666666554433 234555555554 55566666
Q ss_pred HHHHHHHHHHHHhcC
Q psy6156 110 CSVFCMVALYKEFGE 124 (176)
Q Consensus 110 aaVfClVal~~~lGe 124 (176)
+|-.++.++...-.+
T Consensus 82 naa~~L~aII~is~n 96 (475)
T PF04499_consen 82 NAADFLKAIIRISRN 96 (475)
T ss_pred HHHHHHHHHHHHhhc
Confidence 676776666665543
No 239
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=20.63 E-value=4e+02 Score=20.48 Aligned_cols=77 Identities=13% Similarity=0.072 Sum_probs=52.7
Q ss_pred hHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhh-chHHHHHHHhhc------CCChhHHHHHHHHHHHHH
Q psy6156 47 LYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFL-PNIMPALLQAYE------NQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 47 p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L-~~iiP~l~~a~~------~~~s~VRKaaVfClVal~ 119 (176)
|-.+++.|.--+++.+...-+-||.+|..+++..|..--..+- .+++.-+++-+. .+...|++=....+-...
T Consensus 36 ~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 36 PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4457788888888888777888999999999877765333332 244444444443 377899987777666666
Q ss_pred HHhc
Q psy6156 120 KEFG 123 (176)
Q Consensus 120 ~~lG 123 (176)
..++
T Consensus 116 ~~f~ 119 (139)
T cd03567 116 LELP 119 (139)
T ss_pred HHhc
Confidence 5554
No 240
>PF05536 Neurochondrin: Neurochondrin
Probab=20.39 E-value=6e+02 Score=24.01 Aligned_cols=102 Identities=20% Similarity=0.309 Sum_probs=63.9
Q ss_pred chhchHhh-HHHHHHHHhcChhHHHHHHHHHhhcChHHHHHhhhhhhhccCcchHH---HHHHHHHHHHhhcCCchH--H
Q psy6156 13 PVELFLPN-IMPALLQAYENQDSCVRKCSVFCMVALYKVTRILFPLIIAEEHPINL---VAIKMLTKVIEQNGKGPV--E 86 (176)
Q Consensus 13 ~~e~~l~~-iL~~LLd~~~d~e~~VrkAav~~~v~p~~~l~vL~p~l~~~~~~~~~---~aLkmLtklv~~~~~d~l--~ 86 (176)
..+.|... ++.++++. +|.....++ .++..+.+.-.-|.|.+.-..++-|... .|+-.|..++. .+++ +
T Consensus 19 D~~rfagL~lvtk~~~~-~~~~~~~~~-~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~---~~~~a~~ 93 (543)
T PF05536_consen 19 DTERFAGLLLVTKLLDA-DDEDSQTRR-RVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR---DPELASS 93 (543)
T ss_pred cHHHHHHHHHHHHcCCC-chhhHHHHH-HHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC---ChhhhcC
Confidence 35566654 45556652 333333332 4667777654445555544333323332 47788888773 4444 4
Q ss_pred hhhchHHHHHHHhhcCCCh-hHHHHHHHHHHHHH
Q psy6156 87 LFLPNIMPALLQAYENQDS-CVRKCSVFCMVALY 119 (176)
Q Consensus 87 ~~L~~iiP~l~~a~~~~~s-~VRKaaVfClVal~ 119 (176)
+.+-.-+|.|.+.+.+.+. ++-+-+..|+.++.
T Consensus 94 ~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia 127 (543)
T PF05536_consen 94 PQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA 127 (543)
T ss_pred HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH
Confidence 5677889999999988888 99999999988877
No 241
>KOG4346|consensus
Probab=20.22 E-value=2.3e+02 Score=28.22 Aligned_cols=84 Identities=15% Similarity=0.149 Sum_probs=56.0
Q ss_pred cChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCc--hHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q psy6156 45 VALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKG--PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEF 122 (176)
Q Consensus 45 v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d--~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~l 122 (176)
-+|-.+...+.-+..+.++..-.+|+.-.+++|++.+.+ ++...|-..+=++..-|+-.+ -...=+.|+|++|..-
T Consensus 505 ~~PaYV~Dl~emL~~~E~yE~~eaAL~nae~LI~r~pt~~rq~A~eLlq~lLhLqn~f~~~~--F~etq~~aiVa~~vT~ 582 (849)
T KOG4346|consen 505 TPPAYVADLFEMLLEKEKYEVFEAALFNAENLINRRPTGFRQIAEELLQRLLHLQNNFGTPK--FKETQVDAIVAACVTQ 582 (849)
T ss_pred CCchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCccc--hhhhhHHHHHHHHhcC
Confidence 356555555555567778899999999999999866554 333334444444444444333 2233478999999888
Q ss_pred cCCcccccc
Q psy6156 123 GESVLSPYI 131 (176)
Q Consensus 123 Ge~~l~P~L 131 (176)
..+ ..||+
T Consensus 583 p~p-capyl 590 (849)
T KOG4346|consen 583 PPP-CAPYL 590 (849)
T ss_pred CCc-chhHH
Confidence 888 99998
No 242
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=20.20 E-value=3.1e+02 Score=22.32 Aligned_cols=22 Identities=14% Similarity=0.298 Sum_probs=12.3
Q ss_pred CchhchHhhHHHHHHHHhcChh
Q psy6156 12 GPVELFLPNIMPALLQAYENQD 33 (176)
Q Consensus 12 ~~~e~~l~~iL~~LLd~~~d~e 33 (176)
|-+.|+++.++|.+.+...+++
T Consensus 76 efl~~~~~~L~~~~~~~L~~p~ 97 (174)
T PF04510_consen 76 EFLIPFMENLLPEISKVLLPPE 97 (174)
T ss_pred hHHHHHHHHHHHHHHHHcCCch
Confidence 4445555556666666665553
No 243
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=20.01 E-value=53 Score=25.95 Aligned_cols=76 Identities=13% Similarity=0.182 Sum_probs=43.6
Q ss_pred HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcccc
Q psy6156 50 VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSP 129 (176)
Q Consensus 50 ~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P 129 (176)
..+.+..++++++.=..-+++-++...+.. ...+.+...+....+|++-.||||.=.++-++...-.+. +.+
T Consensus 121 ~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~-------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~-v~~ 192 (213)
T PF08713_consen 121 ALELLEKWAKSDNEWVRRAAIVMLLRYIRK-------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDE-VLE 192 (213)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHCTTTHGGG-------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHH-HHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHH-HHH
Confidence 334444445444322233344444444433 445566667777788888889998888888776664444 666
Q ss_pred cccc
Q psy6156 130 YINK 133 (176)
Q Consensus 130 ~L~~ 133 (176)
||..
T Consensus 193 ~l~~ 196 (213)
T PF08713_consen 193 FLQK 196 (213)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6644
Done!