Query psy6156
Match_columns 176
No_of_seqs 131 out of 148
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 19:05:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6156.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6156hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qk1_A Protein STU2; STU2P, XM 99.9 1.4E-21 4.7E-26 161.9 15.0 148 2-149 85-249 (249)
2 2qk2_A LP04448P; mini spindles 99.8 2.1E-18 7.1E-23 139.5 14.7 151 3-154 82-239 (242)
3 2iw3_A Elongation factor 3A; a 99.7 7.1E-18 2.4E-22 163.4 10.0 123 11-134 86-218 (986)
4 2of3_A ZYG-9; multifunctional 99.5 4.9E-14 1.7E-18 119.2 12.2 143 2-150 111-265 (266)
5 4ffb_C Protein STU2; tubulin f 99.3 6.7E-11 2.3E-15 97.7 12.5 137 15-151 97-246 (278)
6 1ibr_B P95, importin beta-1 su 98.6 1.1E-07 3.6E-12 80.8 9.1 119 14-134 315-452 (462)
7 2bpt_A Importin beta-1 subunit 98.4 1.6E-06 5.5E-11 79.3 10.3 129 3-134 581-724 (861)
8 4fdd_A Transportin-1; heat rep 98.3 1.8E-06 6.3E-11 80.4 8.0 117 14-132 293-441 (852)
9 1b3u_A Protein (protein phosph 98.2 2.9E-06 1E-10 74.0 8.2 107 16-125 199-315 (588)
10 1u6g_C TIP120 protein, CAND1; 98.2 2.3E-06 8E-11 82.7 7.9 130 2-134 158-297 (1230)
11 4fdd_A Transportin-1; heat rep 98.2 6.5E-06 2.2E-10 76.7 10.1 127 16-143 355-493 (852)
12 1b3u_A Protein (protein phosph 98.2 1.3E-05 4.3E-10 70.0 10.8 106 17-125 360-475 (588)
13 2bpt_A Importin beta-1 subunit 98.1 1.1E-05 3.8E-10 73.7 10.5 111 14-125 318-445 (861)
14 1u6g_C TIP120 protein, CAND1; 98.1 2.3E-05 7.8E-10 75.8 12.0 130 2-133 458-610 (1230)
15 1qgr_A Protein (importin beta 98.0 1.4E-05 4.8E-10 73.2 8.6 117 15-132 316-450 (876)
16 1qgr_A Protein (importin beta 98.0 2.6E-05 8.8E-10 71.5 9.8 129 5-135 591-736 (876)
17 2qk1_A Protein STU2; STU2P, XM 97.8 0.00017 5.8E-09 59.0 10.4 127 16-142 56-200 (249)
18 2qk2_A LP04448P; mini spindles 97.7 0.00018 6.3E-09 57.2 9.7 125 4-136 41-179 (242)
19 1ibr_B P95, importin beta-1 su 97.7 0.00035 1.2E-08 59.0 11.4 120 2-122 154-290 (462)
20 3ltj_A Alpharep-4; protein eng 97.5 0.00038 1.3E-08 53.3 7.6 87 20-117 45-133 (201)
21 3ltm_A Alpha-REP4; protein eng 97.3 0.00082 2.8E-08 51.7 8.3 85 21-116 51-137 (211)
22 4hxt_A De novo protein OR329; 97.3 0.0025 8.7E-08 49.2 10.7 105 20-125 128-246 (252)
23 3ltj_A Alpharep-4; protein eng 97.3 0.0018 6.1E-08 49.4 9.4 96 21-131 77-174 (201)
24 1te4_A Conserved protein MTH18 97.2 0.0024 8.2E-08 46.2 8.9 83 22-115 44-128 (131)
25 3ltm_A Alpha-REP4; protein eng 97.2 0.0025 8.7E-08 48.9 9.4 98 20-132 81-180 (211)
26 4db6_A Armadillo repeat protei 97.1 0.0025 8.6E-08 48.6 8.7 100 20-120 54-167 (210)
27 2jdq_A Importin alpha-1 subuni 97.1 0.0029 9.8E-08 53.3 9.4 104 15-119 187-304 (450)
28 2jdq_A Importin alpha-1 subuni 97.0 0.0042 1.4E-07 52.3 9.6 101 20-121 234-348 (450)
29 4db8_A Armadillo-repeat protei 96.9 0.007 2.4E-07 47.3 10.2 98 21-119 97-208 (252)
30 1wa5_B Importin alpha subunit; 96.9 0.0064 2.2E-07 53.4 10.5 105 15-120 252-370 (530)
31 1oyz_A Hypothetical protein YI 96.9 0.0052 1.8E-07 49.2 8.9 89 20-117 128-218 (280)
32 4db8_A Armadillo-repeat protei 96.8 0.0063 2.1E-07 47.5 9.1 100 20-120 54-167 (252)
33 4hxt_A De novo protein OR329; 96.8 0.0042 1.5E-07 47.9 8.0 100 20-120 86-199 (252)
34 1te4_A Conserved protein MTH18 96.7 0.00056 1.9E-08 49.7 1.9 96 11-118 3-100 (131)
35 1w63_A Adapter-related protein 96.7 0.0099 3.4E-07 54.1 10.5 72 46-124 101-175 (618)
36 4db6_A Armadillo repeat protei 96.7 0.016 5.3E-07 44.0 9.9 98 21-119 97-208 (210)
37 2vgl_B AP-2 complex subunit be 96.7 0.0049 1.7E-07 55.6 8.1 93 21-120 50-150 (591)
38 1wa5_B Importin alpha subunit; 96.5 0.0061 2.1E-07 53.5 7.7 102 20-122 299-414 (530)
39 2vgl_A Adaptor protein complex 96.5 0.0076 2.6E-07 55.3 8.5 95 22-123 76-180 (621)
40 3tjz_B Coatomer subunit gamma; 96.4 0.0043 1.5E-07 54.0 5.9 106 19-132 67-179 (355)
41 4b8j_A Importin subunit alpha- 96.1 0.039 1.3E-06 48.1 10.4 104 16-120 240-358 (528)
42 1oyz_A Hypothetical protein YI 96.1 0.041 1.4E-06 43.9 9.8 91 21-116 55-153 (280)
43 4b8j_A Importin subunit alpha- 95.8 0.042 1.5E-06 47.8 9.4 101 20-121 117-233 (528)
44 2vgl_B AP-2 complex subunit be 95.8 0.039 1.3E-06 49.7 9.2 101 18-121 84-190 (591)
45 2of3_A ZYG-9; multifunctional 95.6 0.014 4.8E-07 48.9 5.1 81 51-131 85-172 (266)
46 1wa5_C Importin alpha RE-expor 95.1 0.071 2.4E-06 50.5 8.9 103 33-136 471-597 (960)
47 2x1g_F Cadmus; transport prote 94.8 0.055 1.9E-06 51.0 7.2 129 4-134 569-735 (971)
48 3ul1_B Importin subunit alpha- 94.8 0.11 3.7E-06 45.8 8.7 99 21-120 275-387 (510)
49 3tpo_A Importin subunit alpha- 94.8 0.16 5.4E-06 44.8 9.8 100 20-120 293-406 (529)
50 3tpo_A Importin subunit alpha- 94.7 0.1 3.5E-06 46.0 8.3 103 17-120 248-364 (529)
51 1xqr_A HSPBP1 protein; armadil 94.6 0.17 5.8E-06 42.3 9.0 101 20-121 81-197 (296)
52 1xqr_A HSPBP1 protein; armadil 94.6 0.21 7.1E-06 41.7 9.5 101 20-121 124-239 (296)
53 3oc3_A Helicase MOT1, MOT1; re 94.2 0.09 3.1E-06 49.3 6.8 99 18-119 297-403 (800)
54 2z6g_A B-catenin; FULL-length, 94.2 0.16 5.5E-06 47.5 8.6 101 19-121 149-264 (780)
55 3m1i_C Exportin-1; heat repeat 93.8 0.37 1.3E-05 46.1 10.7 118 16-134 536-689 (1049)
56 2iw3_A Elongation factor 3A; a 93.8 0.17 5.7E-06 49.4 8.2 133 3-140 159-301 (986)
57 3ul1_B Importin subunit alpha- 93.6 0.18 6.3E-06 44.3 7.6 102 17-119 229-344 (510)
58 2x1g_F Cadmus; transport prote 93.2 0.41 1.4E-05 45.0 9.7 115 15-134 500-629 (971)
59 2x19_B Importin-13; nuclear tr 93.2 0.34 1.1E-05 45.3 9.0 68 62-134 502-569 (963)
60 1wa5_C Importin alpha RE-expor 93.0 0.12 4E-06 49.0 5.6 86 52-141 458-556 (960)
61 3l9t_A Putative uncharacterize 92.8 0.82 2.8E-05 37.7 9.8 65 10-76 31-98 (240)
62 2x19_B Importin-13; nuclear tr 92.2 1.1 3.8E-05 41.8 11.1 130 3-134 552-727 (963)
63 1jdh_A Beta-catenin; beta-cate 92.1 0.64 2.2E-05 39.7 8.7 102 18-121 15-131 (529)
64 3ibv_A Exportin-T; karyopherin 91.8 0.81 2.8E-05 44.2 9.9 70 49-122 193-262 (980)
65 3now_A UNC-45 protein, SD10334 91.7 0.58 2E-05 44.7 8.6 114 20-134 623-758 (810)
66 2vgl_A Adaptor protein complex 91.4 0.44 1.5E-05 43.5 7.3 105 16-124 107-220 (621)
67 3ibv_A Exportin-T; karyopherin 90.4 0.39 1.3E-05 46.4 6.2 81 50-133 491-578 (980)
68 2z6g_A B-catenin; FULL-length, 90.1 0.77 2.6E-05 42.8 7.7 67 50-119 594-662 (780)
69 2z6h_A Catenin beta-1, beta-ca 90.1 1.4 4.9E-05 39.5 9.3 100 20-121 14-128 (644)
70 4ffb_C Protein STU2; tubulin f 89.4 0.56 1.9E-05 37.8 5.5 72 54-125 14-89 (278)
71 1w63_A Adapter-related protein 89.3 0.78 2.7E-05 41.5 6.9 99 16-119 103-207 (618)
72 4flb_A Regulation of nuclear P 89.1 2.5 8.5E-05 30.7 8.4 66 16-81 4-72 (132)
73 4hat_C Exportin-1; heat repeat 88.7 1.8 6.2E-05 42.0 9.4 130 16-146 536-701 (1023)
74 4ady_A RPN2, 26S proteasome re 88.3 1.4 4.6E-05 43.0 8.1 118 22-150 579-702 (963)
75 2z6h_A Catenin beta-1, beta-ca 87.0 4 0.00014 36.5 10.1 100 20-120 56-169 (644)
76 3m1i_C Exportin-1; heat repeat 86.9 1.2 4E-05 42.7 6.7 122 16-137 491-636 (1049)
77 1jdh_A Beta-catenin; beta-cate 86.7 3.7 0.00013 34.8 9.3 69 50-119 102-171 (529)
78 3a6p_A Exportin-5; exportin-5, 84.5 1 3.6E-05 44.2 5.2 78 62-142 545-634 (1204)
79 4hat_C Exportin-1; heat repeat 84.1 2.6 8.8E-05 41.0 7.7 124 14-137 489-636 (1023)
80 4atg_A TAF6; transcription, TF 84.0 2.6 8.9E-05 33.6 6.5 118 14-147 9-138 (196)
81 3gs3_A Symplekin, LD45768P; he 83.8 5.5 0.00019 32.7 8.7 106 34-144 34-152 (257)
82 3oc3_A Helicase MOT1, MOT1; re 83.6 1.2 3.9E-05 42.0 4.8 88 25-118 228-326 (800)
83 3gjx_A Exportin-1; transport, 83.2 5.1 0.00018 39.3 9.5 126 16-145 562-723 (1073)
84 3nmw_A APC variant protein; AR 83.2 4.2 0.00014 34.5 7.9 101 20-121 214-335 (354)
85 1xm9_A Plakophilin 1; armadill 83.1 3.7 0.00013 35.4 7.7 69 51-120 4-73 (457)
86 3gjx_A Exportin-1; transport, 82.3 3.6 0.00012 40.4 8.0 45 88-132 563-614 (1073)
87 1xm9_A Plakophilin 1; armadill 81.9 7.3 0.00025 33.6 9.1 105 20-128 331-454 (457)
88 1sz9_A PCF11 protein; RNA poly 80.8 12 0.00042 27.8 9.0 127 19-150 10-139 (144)
89 3tjz_B Coatomer subunit gamma; 78.9 3 0.0001 35.9 5.6 105 16-120 135-279 (355)
90 3b2a_A TON_1937, putative unch 78.4 14 0.00047 30.8 9.1 104 15-124 110-219 (265)
91 3now_A UNC-45 protein, SD10334 77.1 10 0.00035 36.1 9.1 98 21-119 537-651 (810)
92 3l9t_A Putative uncharacterize 77.0 25 0.00087 28.8 10.3 92 18-116 69-164 (240)
93 3u0r_A Apoptosis inhibitor 5; 77.0 43 0.0015 30.3 12.8 34 136-171 211-244 (507)
94 3nmz_A APC variant protein; pr 76.1 15 0.00051 32.3 9.4 100 20-120 330-450 (458)
95 3tt9_A Plakophilin-2; cell adh 75.1 7.3 0.00025 31.3 6.6 70 50-120 9-81 (233)
96 4gmo_A Putative uncharacterize 72.9 5.8 0.0002 36.3 6.1 67 57-123 42-108 (684)
97 3o2t_A Symplekin; heat repeat, 70.3 17 0.00059 31.6 8.2 82 34-120 44-129 (386)
98 3tt9_A Plakophilin-2; cell adh 69.2 26 0.00089 28.0 8.6 68 50-118 53-122 (233)
99 1x5b_A Signal transducing adap 69.1 27 0.00092 26.5 8.2 81 45-125 48-130 (163)
100 3opb_A SWI5-dependent HO expre 67.3 34 0.0012 32.5 10.1 55 66-120 576-635 (778)
101 3l6x_A Catenin delta-1; cateni 66.0 23 0.00079 32.3 8.5 106 15-120 43-163 (584)
102 2db0_A 253AA long hypothetical 65.6 33 0.0011 27.9 8.3 65 51-121 183-247 (253)
103 1lrv_A LRV, leucine-rich repea 65.1 7.3 0.00025 31.6 4.5 19 94-113 221-239 (244)
104 4fu3_A Regulation of nuclear P 60.9 30 0.001 24.8 6.8 61 19-79 6-69 (135)
105 3nmw_A APC variant protein; AR 59.1 46 0.0016 27.9 8.6 100 11-119 42-155 (354)
106 1ho8_A Vacuolar ATP synthase s 59.0 24 0.00083 31.7 7.1 69 49-118 395-474 (480)
107 3l6x_A Catenin delta-1; cateni 58.9 19 0.00067 32.8 6.6 70 50-120 49-119 (584)
108 3a6p_A Exportin-5; exportin-5, 58.8 1.4E+02 0.0047 29.2 14.1 131 16-149 568-735 (1204)
109 3b2a_A TON_1937, putative unch 58.1 51 0.0018 27.4 8.4 76 49-127 33-108 (265)
110 3opb_A SWI5-dependent HO expre 57.2 92 0.0032 29.6 11.0 97 20-120 606-728 (778)
111 3ldz_A STAM-1, signal transduc 57.0 55 0.0019 24.0 9.0 80 46-125 39-119 (140)
112 2db0_A 253AA long hypothetical 56.3 80 0.0027 25.7 9.1 82 50-149 145-226 (253)
113 1w9c_A CRM1 protein, exportin 55.1 65 0.0022 27.3 8.8 63 62-124 134-200 (321)
114 3grl_A General vesicular trans 54.6 27 0.00093 32.6 6.8 70 50-120 123-195 (651)
115 2km4_A Regulator of TY1 transp 46.6 82 0.0028 22.9 9.0 95 18-112 4-107 (142)
116 1juq_A ADP-ribosylation factor 45.9 95 0.0033 23.5 8.1 80 46-125 47-133 (171)
117 3fqd_A Protein DHP1, 5'-3' exo 44.3 14 0.00049 35.7 3.3 37 110-147 324-363 (899)
118 3nmz_A APC variant protein; pr 44.3 71 0.0024 27.9 7.7 70 50-119 331-407 (458)
119 3gs3_A Symplekin, LD45768P; he 43.7 86 0.003 25.4 7.6 66 49-119 16-81 (257)
120 1w9c_A CRM1 protein, exportin 43.3 31 0.0011 29.3 5.0 67 66-133 46-115 (321)
121 3g2s_A C-terminal fragment of 39.3 1.2E+02 0.004 22.6 8.8 80 46-125 45-131 (149)
122 3o2t_A Symplekin; heat repeat, 38.8 1.5E+02 0.0052 25.6 8.8 69 47-120 24-92 (386)
123 3u0r_A Apoptosis inhibitor 5; 38.3 1.3E+02 0.0044 27.3 8.3 59 19-77 64-128 (507)
124 1mhq_A ADP-ribosylation factor 38.1 1.2E+02 0.0041 22.4 8.6 79 46-124 35-120 (148)
125 3pie_A 5'->3' exoribonuclease 37.9 14 0.00048 36.7 2.2 36 111-147 277-315 (1155)
126 2y35_A LD22664P; hydrolase-DNA 35.9 28 0.00095 34.6 3.9 40 110-150 273-315 (1140)
127 1vsy_5 Proteasome activator BL 35.4 1.2E+02 0.0039 29.5 8.1 104 20-124 843-970 (997)
128 3gvo_A Pumilio 2, pumilio homo 35.2 28 0.00095 28.9 3.4 98 5-106 44-146 (351)
129 1yod_A Water-solublized phosph 34.8 28 0.00095 19.3 2.2 14 136-149 2-15 (30)
130 2f31_A Diaphanous protein homo 34.4 38 0.0013 26.7 3.9 56 67-123 72-128 (233)
131 1vsy_5 Proteasome activator BL 31.9 54 0.0019 31.8 5.2 65 50-119 802-872 (997)
132 3eg5_B Protein diaphanous homo 30.3 79 0.0027 27.0 5.5 55 67-123 138-194 (383)
133 1lrv_A LRV, leucine-rich repea 30.3 30 0.001 27.8 2.7 21 94-114 197-217 (244)
134 3k49_A MRNA-binding protein PU 28.6 32 0.0011 28.8 2.7 95 6-104 50-149 (369)
135 1elk_A Target of MYB1; superhe 28.0 1.8E+02 0.0062 21.4 8.7 80 45-124 49-134 (157)
136 1vdy_A Hypothetical protein (R 27.9 1E+02 0.0034 23.0 5.1 70 49-119 49-129 (140)
137 3dwl_G Actin-related protein 2 26.9 1.1E+02 0.0036 23.3 5.1 54 101-154 66-119 (152)
138 1vsy_4 Proteasome activator BL 25.6 2.6E+02 0.0088 26.4 8.6 116 13-128 332-463 (799)
139 4ady_A RPN2, 26S proteasome re 25.1 1.3E+02 0.0045 29.3 6.5 93 55-152 21-127 (963)
140 1k8k_G P16, ARP2/3 complex 16 23.2 1E+02 0.0034 23.4 4.3 53 104-156 68-120 (151)
141 3gvo_A Pumilio 2, pumilio homo 22.6 43 0.0015 27.8 2.4 35 69-103 181-215 (351)
142 4a1q_A ORF E73; viral protein, 21.7 19 0.00065 23.5 -0.0 13 139-151 24-36 (73)
143 4gmo_A Putative uncharacterize 21.7 1.4E+02 0.005 26.9 5.9 50 69-119 160-213 (684)
No 1
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.4e-21 Score=161.93 Aligned_cols=148 Identities=11% Similarity=0.211 Sum_probs=132.3
Q ss_pred hhHHHHHhCCCchh-chHhhHHHHHHHHhcChhHHHHHHH------HHhhc------C-hHHHHHhhhhhhhccCcchHH
Q psy6156 2 LTKVIEQNGKGPVE-LFLPNIMPALLQAYENQDSCVRKCS------VFCMV------A-LYKVTRILFPLIIAEEHPINL 67 (176)
Q Consensus 2 ~t~~~e~~~~~~~e-~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v------~-p~~~l~vL~p~l~~~~~~~~~ 67 (176)
+..+.++.+++.++ +|...++|.+++.++|+...|++++ ++..+ + ++.+++.|.+.+++++|+.+.
T Consensus 85 l~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~ 164 (249)
T 2qk1_A 85 VELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRM 164 (249)
T ss_dssp HHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHH
Confidence 34566777734598 9999999999999999988888874 45455 4 678999999999999999999
Q ss_pred HHHHHHHHHHhhcCC--chHHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHH
Q psy6156 68 VAIKMLTKVIEQNGK--GPVELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQL 144 (176)
Q Consensus 68 ~aLkmLtklv~~~~~--d~l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~i 144 (176)
++++.+.++++..+. +.+..++ +.++|.+.+.++|++++||++|++|+.++|..+|++++.||++.|+++|++.++-
T Consensus 165 ~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~~ki~~ 244 (249)
T 2qk1_A 165 ECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIEE 244 (249)
T ss_dssp HHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999987775 7788999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhh
Q psy6156 145 YIKRS 149 (176)
Q Consensus 145 Yi~R~ 149 (176)
|++++
T Consensus 245 ~~~~~ 249 (249)
T 2qk1_A 245 TVKTL 249 (249)
T ss_dssp HHHC-
T ss_pred HHhcC
Confidence 99874
No 2
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.79 E-value=2.1e-18 Score=139.49 Aligned_cols=151 Identities=11% Similarity=0.225 Sum_probs=135.6
Q ss_pred hHHHHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHH------HHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHH
Q psy6156 3 TKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS------VFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKV 76 (176)
Q Consensus 3 t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtkl 76 (176)
..+....++ .+++|.+.++|.|+++++|+...||+++ ++...++..+++.|...+++.+|+.+..++..+..+
T Consensus 82 ~~la~~l~~-~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 82 ALLAKGLAK-RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARA 160 (242)
T ss_dssp HHHHHHHGG-GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh-hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 455566664 4899999999999999999999999986 444567778999999999999999999999999999
Q ss_pred HhhcCCc-hHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHHhhhcccCC
Q psy6156 77 IEQNGKG-PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSS 154 (176)
Q Consensus 77 v~~~~~d-~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi~R~~~~~~ 154 (176)
+...+++ ....+++.++|.+...++|++++||++|..|+..++..+|++.+.||++.|++++++.+.-|+++++.+..
T Consensus 161 l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a~v~~~ 239 (242)
T 2qk2_A 161 LTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKAEIKIK 239 (242)
T ss_dssp HTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHCCCCSC
T ss_pred HHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc
Confidence 9888776 45789999999999999999999999999999999999999889999999999999999999999987653
No 3
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.73 E-value=7.1e-18 Score=163.39 Aligned_cols=123 Identities=15% Similarity=0.281 Sum_probs=110.8
Q ss_pred CCchhchHhhHHHHHHHHhcChhHHHHHHH------HHhhcChHH---HHHhhhhhhhcc-CcchHHHHHHHHHHHHhhc
Q psy6156 11 KGPVELFLPNIMPALLQAYENQDSCVRKCS------VFCMVALYK---VTRILFPLIIAE-EHPINLVAIKMLTKVIEQN 80 (176)
Q Consensus 11 ~~~~e~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~p~~---~l~vL~p~l~~~-~~~~~~~aLkmLtklv~~~ 80 (176)
+.++|||+-.++|.+++++.|++..||+|| ++..++|+. +++.|...+.++ |||.+++||+++.++++..
T Consensus 86 ~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~ 165 (986)
T 2iw3_A 86 SPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA 165 (986)
T ss_dssp CTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS
T ss_pred CCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Confidence 346899999999999999999999999985 777899987 455555556544 8999999999999999766
Q ss_pred CCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccC
Q psy6156 81 GKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKL 134 (176)
Q Consensus 81 ~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L 134 (176)
++++...||+++|.+.++|||++++|.|+|..||.++|..+||.|++||++.|
T Consensus 166 -~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~ 218 (986)
T 2iw3_A 166 -KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSL 218 (986)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHH
T ss_pred -HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHH
Confidence 89999999999999999999999999999999999999999999999999866
No 4
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.54 E-value=4.9e-14 Score=119.17 Aligned_cols=143 Identities=17% Similarity=0.226 Sum_probs=122.4
Q ss_pred hhHHHHHhCCC--chhch-HhhHHHHHHHHhcChhHHHHHHH------HHhhcChHHHHHhhhhhhhccCcchHHHHHHH
Q psy6156 2 LTKVIEQNGKG--PVELF-LPNIMPALLQAYENQDSCVRKCS------VFCMVALYKVTRILFPLIIAEEHPINLVAIKM 72 (176)
Q Consensus 2 ~t~~~e~~~~~--~~e~~-l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkm 72 (176)
++.++++.+.. .+.++ ...++|-|++..+|+.+.||+++ +....+|..+++.+...+.+..|++..+++..
T Consensus 111 L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~ 190 (266)
T 2of3_A 111 CKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLV 190 (266)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 34455555332 23333 46899999999999999999986 33346888899999999999999999999999
Q ss_pred HHHHHhhcCCchHHhhhchHH---HHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHHhhh
Q psy6156 73 LTKVIEQNGKGPVELFLPNIM---PALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRS 149 (176)
Q Consensus 73 Ltklv~~~~~d~l~~~L~~ii---P~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi~R~ 149 (176)
+..+++..|... ...+ |.+.+.++|.+++||+||+.|++++|..+|+. +..|+..|++.++.+++-.++|+
T Consensus 191 l~~li~~~G~~~-----~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~-v~k~lg~L~~~~~~~l~er~~r~ 264 (266)
T 2of3_A 191 IEYYITNAGISP-----LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ-MWKAAGRMADKDKSLVEERIKRT 264 (266)
T ss_dssp HHHHHHHHCSGG-----GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH-HHHHHCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCc-----cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH-HHHHHhcCCHHHHHHHHHHHhhc
Confidence 999999999872 3457 99999999999999999999999999999999 99999999999999999999997
Q ss_pred c
Q psy6156 150 Q 150 (176)
Q Consensus 150 ~ 150 (176)
.
T Consensus 265 ~ 265 (266)
T 2of3_A 265 G 265 (266)
T ss_dssp T
T ss_pred c
Confidence 4
No 5
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=99.25 E-value=6.7e-11 Score=97.67 Aligned_cols=137 Identities=16% Similarity=0.232 Sum_probs=107.7
Q ss_pred hchHhhHHHHHHHH-hcChhHHHHHHHH------H-hhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCch--
Q psy6156 15 ELFLPNIMPALLQA-YENQDSCVRKCSV------F-CMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGP-- 84 (176)
Q Consensus 15 e~~l~~iL~~LLd~-~~d~e~~VrkAav------~-~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~-- 84 (176)
..+...++|.|++. .+|....+|++++ + ...+++.++..+.+.+++..++...+++..|.++++..+...
T Consensus 97 ~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~ 176 (278)
T 4ffb_C 97 ITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVN 176 (278)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCC
Confidence 45667899999986 6887766666541 1 123567799999999999999999999999999999887764
Q ss_pred HHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCc---cccccccCcHHHHHHHHHHHhhhcc
Q psy6156 85 VELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESV---LSPYINKLSGAKLKLLQLYIKRSQT 151 (176)
Q Consensus 85 l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~---l~P~L~~L~~~k~kLl~iYi~R~~~ 151 (176)
....++.+++.+..+++|++++||++|..|++++|..+|+.. ..+++..|.+.|++-++-..++..+
T Consensus 177 ~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~f~k~~~ 246 (278)
T 4ffb_C 177 VQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAKVGD 246 (278)
T ss_dssp HHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHHHHHSCCCC
T ss_pred chhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHHHHHHhcCC
Confidence 456788999999999999999999999999999999999862 2468899999999988777766543
No 6
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.63 E-value=1.1e-07 Score=80.80 Aligned_cols=119 Identities=16% Similarity=0.226 Sum_probs=92.4
Q ss_pred hhchHhhHHHHHHHHhcCh-------hHHHHHHH------HHhhcChHHHHHhhhh----hhhccCcchHHHHHHHHHHH
Q psy6156 14 VELFLPNIMPALLQAYENQ-------DSCVRKCS------VFCMVALYKVTRILFP----LIIAEEHPINLVAIKMLTKV 76 (176)
Q Consensus 14 ~e~~l~~iL~~LLd~~~d~-------e~~VrkAa------v~~~v~p~~~l~vL~p----~l~~~~~~~~~~aLkmLtkl 76 (176)
+++++..++|.+++.+.+. +..+|+++ ++..++ ..+++.+.| .+++.+|..+.+|+..+..+
T Consensus 315 ~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l 393 (462)
T 1ibr_B 315 AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCI 393 (462)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 3456788999998888532 23677765 222233 445554444 55778999999999999999
Q ss_pred HhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcc--ccccccC
Q psy6156 77 IEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVL--SPYINKL 134 (176)
Q Consensus 77 v~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l--~P~L~~L 134 (176)
.+..+++.+..+++.++|.+...++|+++.||++|..|+-.++..+|+. + .||++.+
T Consensus 394 ~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~-~~~~~~l~~l 452 (462)
T 1ibr_B 394 LEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA-AINDVYLAPL 452 (462)
T ss_dssp SSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG-CCSTTTHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccc-cccHHHHHHH
Confidence 9877667788899999999999999999999999999999999999986 4 4666543
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.37 E-value=1.6e-06 Score=79.35 Aligned_cols=129 Identities=16% Similarity=0.281 Sum_probs=103.4
Q ss_pred hHHHHHhCCCchhchHhhHHHHHHHHhcChhH-HHHHHHH------Hhh----cChH--HHHHhhhhhhhccCcchHHHH
Q psy6156 3 TKVIEQNGKGPVELFLPNIMPALLQAYENQDS-CVRKCSV------FCM----VALY--KVTRILFPLIIAEEHPINLVA 69 (176)
Q Consensus 3 t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~-~VrkAav------~~~----v~p~--~~l~vL~p~l~~~~~~~~~~a 69 (176)
+.+++..++ .+.++++.+++.+++.+.+.+. .||++++ +.. +.|+ .+++.|...+++.++.....+
T Consensus 581 ~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a 659 (861)
T 2bpt_A 581 AAVIRKSPS-SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITA 659 (861)
T ss_dssp HHHHHHCGG-GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHhhh-hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 455666664 4789999999999999988765 7787642 111 2222 366677777777788889999
Q ss_pred HHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCC--hhHHHHHHHHHHHHHHHhcCCccccccccC
Q psy6156 70 IKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQD--SCVRKCSVFCMVALYKEFGESVLSPYINKL 134 (176)
Q Consensus 70 LkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~--s~VRKaaVfClVal~~~lGe~~l~P~L~~L 134 (176)
++++..+++..+ +.+.+.++.++|.+.+.+++.+ .+||.++..|+-.+...+|+. +.||++.+
T Consensus 660 ~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~-~~~~l~~~ 724 (861)
T 2bpt_A 660 VGFIADISNSLE-EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD-FIPYLNDI 724 (861)
T ss_dssp HHHHHHHHHHTG-GGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGG-GHHHHHHH
T ss_pred HHHHHHHHHHhc-hhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhh-HHHHHHHH
Confidence 999999997766 5788899999999999999876 899999999999999999997 99999754
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.25 E-value=1.8e-06 Score=80.43 Aligned_cols=117 Identities=20% Similarity=0.337 Sum_probs=89.4
Q ss_pred hhchHhhHHHHHHHHh-----------cC-----------hhHHHHHHH------HHhhcChHHHHH----hhhhhhhcc
Q psy6156 14 VELFLPNIMPALLQAY-----------EN-----------QDSCVRKCS------VFCMVALYKVTR----ILFPLIIAE 61 (176)
Q Consensus 14 ~e~~l~~iL~~LLd~~-----------~d-----------~e~~VrkAa------v~~~v~p~~~l~----vL~p~l~~~ 61 (176)
+.+++..++|.+++.+ .| .+-.||+++ ++... ++.++. .+...+++.
T Consensus 293 ~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~-~~~~~~~l~~~l~~~l~~~ 371 (852)
T 4fdd_A 293 LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVY-RDELLPHILPLLKELLFHH 371 (852)
T ss_dssp HTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHH-GGGGHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHhcCC
Confidence 5678888899998887 33 122567765 22222 334444 444456778
Q ss_pred CcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccc
Q psy6156 62 EHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYIN 132 (176)
Q Consensus 62 ~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~ 132 (176)
+|..+.+|+..+..+.+.. .+.+..++++++|.+...++|+++.||++|.+|+-.+...+++....+|+.
T Consensus 372 ~~~~R~aa~~alg~i~~~~-~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~ 441 (852)
T 4fdd_A 372 EWVVKESGILVLGAIAEGC-MQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLK 441 (852)
T ss_dssp SHHHHHHHHHHHHHTTTTT-HHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHH
T ss_pred CHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 9999999999999999554 457778999999999999999999999999999999999888766666664
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.22 E-value=2.9e-06 Score=74.04 Aligned_cols=107 Identities=11% Similarity=0.159 Sum_probs=85.7
Q ss_pred chHhhHHHHHHHHhcChhHHHHHHH------HHhhcChHH----HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchH
Q psy6156 16 LFLPNIMPALLQAYENQDSCVRKCS------VFCMVALYK----VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPV 85 (176)
Q Consensus 16 ~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~p~~----~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l 85 (176)
.+...++|.+++...|.+..||+++ +...++++. +++.+...+++.+|.....|++.+..+.+..+++.
T Consensus 199 ~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~- 277 (588)
T 1b3u_A 199 NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI- 277 (588)
T ss_dssp HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH-
T ss_pred hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc-
Confidence 4567788889999999888999876 233355544 44445555677789999999999999997776643
Q ss_pred HhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156 86 ELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 86 ~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~ 125 (176)
..++++|.+.+.++|++++||++|.+++-.+...+|.+
T Consensus 278 --~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 315 (588)
T 1b3u_A 278 --TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD 315 (588)
T ss_dssp --HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT
T ss_pred --chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChh
Confidence 46788999999999999999999999999999988865
No 10
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.21 E-value=2.3e-06 Score=82.72 Aligned_cols=130 Identities=15% Similarity=0.303 Sum_probs=101.6
Q ss_pred hhHHHHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHHHHh-----hcChH----HHHHhhhhhhhccC-cchHHHHHH
Q psy6156 2 LTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFC-----MVALY----KVTRILFPLIIAEE-HPINLVAIK 71 (176)
Q Consensus 2 ~t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAav~~-----~v~p~----~~l~vL~p~l~~~~-~~~~~~aLk 71 (176)
+.++.+..++. +.+|+..+++.++....|.+..||++++-+ ...+. .+++.|.+.+.+.+ +.....++.
T Consensus 158 l~~~~~~~~~~-l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~ 236 (1230)
T 1u6g_C 158 MADMLSRQGGL-LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQ 236 (1230)
T ss_dssp HHHHHHHTCSS-CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred HHHHHHHhHhH-HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence 45666766654 889999999999999999888999986221 11222 24566666665543 456667899
Q ss_pred HHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccC
Q psy6156 72 MLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKL 134 (176)
Q Consensus 72 mLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L 134 (176)
.+..+++..+ +.+.+++++++|.+.+.+.|.+.+||.++..++-.+....|++ +.||++.+
T Consensus 237 ~l~~l~~~~~-~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~l~~l 297 (1230)
T 1u6g_C 237 CIAAISRQAG-HRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE-VYPHVSTI 297 (1230)
T ss_dssp HHHHHHHHSS-GGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC-CHHHHHHH
T ss_pred HHHHHHHHhH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH-HHHhHHHH
Confidence 9999986655 4678899999999999999999999999999999999999988 99998654
No 11
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.19 E-value=6.5e-06 Score=76.74 Aligned_cols=127 Identities=15% Similarity=0.251 Sum_probs=101.3
Q ss_pred chHhhHHHHHHHHhcChhHHHHHHHHHhh--c--------Ch--HHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCc
Q psy6156 16 LFLPNIMPALLQAYENQDSCVRKCSVFCM--V--------AL--YKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKG 83 (176)
Q Consensus 16 ~~l~~iL~~LLd~~~d~e~~VrkAav~~~--v--------~p--~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d 83 (176)
..+..++|.+.+...|.+.-+|++++... + .+ ...++.|.+.+++.++.....|...+.++.+..+.+
T Consensus 355 ~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 434 (852)
T 4fdd_A 355 ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ 434 (852)
T ss_dssp GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 34567888888888888888999873321 1 11 247777788888888889999999999998777666
Q ss_pred hHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHH
Q psy6156 84 PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQ 143 (176)
Q Consensus 84 ~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~ 143 (176)
.....++.++|.+.+.++|.++.||++|..++..++...|++ +.||++.+=+.=.++++
T Consensus 435 ~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~-l~~~l~~ll~~L~~~l~ 493 (852)
T 4fdd_A 435 PPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE-LVPYLAYILDTLVFAFS 493 (852)
T ss_dssp CTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG-GGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh-hHhHHHHHHHHHHHHHH
Confidence 667789999999999999999999999999999999999988 99999766554444443
No 12
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.16 E-value=1.3e-05 Score=69.99 Aligned_cols=106 Identities=14% Similarity=0.199 Sum_probs=86.1
Q ss_pred hHhhHHHHHHHHhcChhHHHHHHH------HHhhcChH----HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHH
Q psy6156 17 FLPNIMPALLQAYENQDSCVRKCS------VFCMVALY----KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVE 86 (176)
Q Consensus 17 ~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~p~----~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~ 86 (176)
+...++|.+++.++|.++-||.++ +...+.++ .+++.|...+++.+|.....++..+..+.+..+.+.
T Consensus 360 ~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~-- 437 (588)
T 1b3u_A 360 TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF-- 437 (588)
T ss_dssp HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG--
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH--
Confidence 345678888888899888899875 33334443 356666667788899999999999999998887763
Q ss_pred hhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156 87 LFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 87 ~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~ 125 (176)
..+.++|.+.+.++|.+++||++|+.|+-.+...+|++
T Consensus 438 -~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 475 (588)
T 1b3u_A 438 -FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE 475 (588)
T ss_dssp -CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH
T ss_pred -HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch
Confidence 34689999999999999999999999999999999875
No 13
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.14 E-value=1.1e-05 Score=73.74 Aligned_cols=111 Identities=16% Similarity=0.238 Sum_probs=87.5
Q ss_pred hhchHhhHHHHHHHHhcCh-------hHHHHHHH------HHhhcChHH----HHHhhhhhhhccCcchHHHHHHHHHHH
Q psy6156 14 VELFLPNIMPALLQAYENQ-------DSCVRKCS------VFCMVALYK----VTRILFPLIIAEEHPINLVAIKMLTKV 76 (176)
Q Consensus 14 ~e~~l~~iL~~LLd~~~d~-------e~~VrkAa------v~~~v~p~~----~l~vL~p~l~~~~~~~~~~aLkmLtkl 76 (176)
..+++..++|.+++.+.+. +-.+|+++ ++..++ .. +++.+...+++.+|..+.+|+..+..+
T Consensus 318 ~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i 396 (861)
T 2bpt_A 318 ALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-NHILEPVLEFVEQNITADNWRNREAAVMAFGSI 396 (861)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc-HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Confidence 4567788999999988742 23677765 222222 23 444445556788999999999999999
Q ss_pred HhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156 77 IEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 77 v~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~ 125 (176)
++..+++.+.++++.++|.+...+.|+++.||.++.+|+-.++..+|+.
T Consensus 397 ~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 445 (861)
T 2bpt_A 397 MDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAES 445 (861)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhh
Confidence 9766668888999999999999999999999999999999999998864
No 14
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.09 E-value=2.3e-05 Score=75.82 Aligned_cols=130 Identities=12% Similarity=0.248 Sum_probs=98.5
Q ss_pred hhHHHHHhCCCchhchHhhHHHHHHHHhcChhH--HHHHHH------HHhhcChHH-------HHHhhhhhhhccCcchH
Q psy6156 2 LTKVIEQNGKGPVELFLPNIMPALLQAYENQDS--CVRKCS------VFCMVALYK-------VTRILFPLIIAEEHPIN 66 (176)
Q Consensus 2 ~t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~--~VrkAa------v~~~v~p~~-------~l~vL~p~l~~~~~~~~ 66 (176)
+..+++.. ++.+.+|++.+++.+++...|... .++.++ ++....++. +++.|...+++..|...
T Consensus 458 L~~l~~~~-~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~ 536 (1230)
T 1u6g_C 458 LTELVNVL-PGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKIT 536 (1230)
T ss_dssp HHHHHHHS-TTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHc-hhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHH
Confidence 34566664 455789999999999999998752 555543 222234442 44444445566677777
Q ss_pred HHHHHHHHHHHhhcCC------chHHhhhchHHHHHHHhh--cCCChhHHHHHHHHHHHHHHHhcCCcccccccc
Q psy6156 67 LVAIKMLTKVIEQNGK------GPVELFLPNIMPALLQAY--ENQDSCVRKCSVFCMVALYKEFGESVLSPYINK 133 (176)
Q Consensus 67 ~~aLkmLtklv~~~~~------d~l~~~L~~iiP~l~~a~--~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~ 133 (176)
..|+..+..+++..+. ..+.+.++.++|.+...+ .|.+++||.+|++|+-.+....|+. +.||++.
T Consensus 537 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~-~~~~~~~ 610 (1230)
T 1u6g_C 537 SEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDN-LGSDLPN 610 (1230)
T ss_dssp HHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGG-CCTHHHH
T ss_pred HHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCch-hhhhHHH
Confidence 7889999998877665 577889999999999999 8899999999999999999999988 8887754
No 15
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.02 E-value=1.4e-05 Score=73.24 Aligned_cols=117 Identities=15% Similarity=0.212 Sum_probs=88.8
Q ss_pred hchHhhHHHHHHHHhc-------ChhHHHHHHHHHh------hcChHH----HHHhhhhhhhccCcchHHHHHHHHHHHH
Q psy6156 15 ELFLPNIMPALLQAYE-------NQDSCVRKCSVFC------MVALYK----VTRILFPLIIAEEHPINLVAIKMLTKVI 77 (176)
Q Consensus 15 e~~l~~iL~~LLd~~~-------d~e~~VrkAav~~------~v~p~~----~l~vL~p~l~~~~~~~~~~aLkmLtklv 77 (176)
.+++..++|.+++... |.+..+|+++..+ .++ +. +++.+...+++.+|....+|+..+..+.
T Consensus 316 ~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~ 394 (876)
T 1qgr_A 316 KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL 394 (876)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc-HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 3456778888888874 2234677765221 122 23 4444455567789999999999999999
Q ss_pred hhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCc-cccccc
Q psy6156 78 EQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESV-LSPYIN 132 (176)
Q Consensus 78 ~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~-l~P~L~ 132 (176)
+..+++.+..+++.++|.+..+++|+++.||.+|.+|+-.++..+++.- ..||++
T Consensus 395 ~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~ 450 (876)
T 1qgr_A 395 EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA 450 (876)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHH
Confidence 7777778888999999999999999999999999999999999888641 345654
No 16
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.99 E-value=2.6e-05 Score=71.50 Aligned_cols=129 Identities=13% Similarity=0.133 Sum_probs=96.6
Q ss_pred HHHHhCCCchhchHhhHHHHHHHHhcChh--HHHHHHH------HHh----hcCh--HHHHHhhhhhhhcc-CcchHHHH
Q psy6156 5 VIEQNGKGPVELFLPNIMPALLQAYENQD--SCVRKCS------VFC----MVAL--YKVTRILFPLIIAE-EHPINLVA 69 (176)
Q Consensus 5 ~~e~~~~~~~e~~l~~iL~~LLd~~~d~e--~~VrkAa------v~~----~v~p--~~~l~vL~p~l~~~-~~~~~~~a 69 (176)
+++..+.+.+.+|+..++|.+++.+++.. ..+|+.+ ++. .+.| ..+++.|.+.+.+. ++.....|
T Consensus 591 l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a 670 (876)
T 1qgr_A 591 VLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAA 670 (876)
T ss_dssp HHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 33333424578999999999999998763 2566653 111 1334 34778888888776 78888899
Q ss_pred HHHHHHHHhhcCCchHHhhhchHHHHHHHhhcC--CChhHHHHHHHHHHHHHHHhcCCccccccccCc
Q psy6156 70 IKMLTKVIEQNGKGPVELFLPNIMPALLQAYEN--QDSCVRKCSVFCMVALYKEFGESVLSPYINKLS 135 (176)
Q Consensus 70 LkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~--~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~ 135 (176)
+..+..++...+ +.+.+.+++++|.+.+.+.+ .+.++|.++..|+-.+...+|++ +.||++.+-
T Consensus 671 ~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~-~~~~l~~~~ 736 (876)
T 1qgr_A 671 VGLVGDLCRALQ-SNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGE-FKKYLEVVL 736 (876)
T ss_dssp HHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGG-GGGGHHHHH
T ss_pred HHHHHHHHHHHH-HhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchh-HHHHHHHHH
Confidence 999999987666 56788899999999999987 46789999999999999999988 999986543
No 17
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.00017 Score=58.96 Aligned_cols=127 Identities=11% Similarity=0.064 Sum_probs=94.9
Q ss_pred chHhhHHHHHHHHh-cChhHHHHHHH------HHh-----hcC-hHH--HHHhhhhhhhccCcchHHHHHHHHHHHHhhc
Q psy6156 16 LFLPNIMPALLQAY-ENQDSCVRKCS------VFC-----MVA-LYK--VTRILFPLIIAEEHPINLVAIKMLTKVIEQN 80 (176)
Q Consensus 16 ~~l~~iL~~LLd~~-~d~e~~VrkAa------v~~-----~v~-p~~--~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~ 80 (176)
..+..++..|.... +|++-.||.++ ++. .+. ++. ++..+...+.+.+....-++-..+..+++..
T Consensus 56 ~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~ 135 (249)
T 2qk1_A 56 QNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYY 135 (249)
T ss_dssp CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc
Confidence 34456688888888 78887777664 222 333 553 6666666777777777778888999999888
Q ss_pred CCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcC--Ccccccc-ccCcHHHHHHH
Q psy6156 81 GKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGE--SVLSPYI-NKLSGAKLKLL 142 (176)
Q Consensus 81 ~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe--~~l~P~L-~~L~~~k~kLl 142 (176)
++......++.+++.+..+++|.++.||.++..++..+....+. ..+.||+ +.+=+.=.+++
T Consensus 136 ~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l 200 (249)
T 2qk1_A 136 DPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIV 200 (249)
T ss_dssp CTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHH
T ss_pred cccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHh
Confidence 77554334899999999999999999999999999999988885 4477787 76666544444
No 18
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.74 E-value=0.00018 Score=57.19 Aligned_cols=125 Identities=8% Similarity=0.094 Sum_probs=82.9
Q ss_pred HHHHHhCCCchhchHhhHHHHHHHHh-cChhHHHHHHHH------Hhh----cChH--HHHHhhhhhhhccCcchHHHHH
Q psy6156 4 KVIEQNGKGPVELFLPNIMPALLQAY-ENQDSCVRKCSV------FCM----VALY--KVTRILFPLIIAEEHPINLVAI 70 (176)
Q Consensus 4 ~~~e~~~~~~~e~~l~~iL~~LLd~~-~d~e~~VrkAav------~~~----v~p~--~~l~vL~p~l~~~~~~~~~~aL 70 (176)
.+++.+++ .....+..+++.|.... +|.+..||+++. +.. +.++ .+++.|...+.+.+.....+|.
T Consensus 41 ~l~~~~~~-~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~ 119 (242)
T 2qk2_A 41 KLLTDHPK-LENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALR 119 (242)
T ss_dssp HHHHHCSS-BCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHH
T ss_pred HHHccCCC-CCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 44554332 23344567788888888 488877777652 211 2232 2666666666777778888888
Q ss_pred HHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC-ccccccccCcH
Q psy6156 71 KMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES-VLSPYINKLSG 136 (176)
Q Consensus 71 kmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~-~l~P~L~~L~~ 136 (176)
..+..+++..+ ++.++|.+..+++|.++.||.+++.++-.+....|.+ .+.+|++.+-+
T Consensus 120 ~aL~~~~~~~~-------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p 179 (242)
T 2qk2_A 120 EAIDAIYASTS-------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTT 179 (242)
T ss_dssp HHHHHHHTTSC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHcCC-------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Confidence 88888886543 5678888888888889999998888888776666543 34566654433
No 19
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.70 E-value=0.00035 Score=58.97 Aligned_cols=120 Identities=9% Similarity=0.123 Sum_probs=92.4
Q ss_pred hhHHHHHhCCCchhchHhhHHHHHHHHhcCh--hHHHHHHHHHhh------cC----h----HHHHHhhhhhhhccCcch
Q psy6156 2 LTKVIEQNGKGPVELFLPNIMPALLQAYENQ--DSCVRKCSVFCM------VA----L----YKVTRILFPLIIAEEHPI 65 (176)
Q Consensus 2 ~t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~--e~~VrkAav~~~------v~----p----~~~l~vL~p~l~~~~~~~ 65 (176)
+.++.++..++.+.+++..+++.++++..|. ...||.+++-+. +. . ..++++|...+++.++..
T Consensus 154 l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v 233 (462)
T 1ibr_B 154 IGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRV 233 (462)
T ss_dssp HHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHH
Confidence 3456666655667899999999999999998 578888763221 11 1 114556666666777888
Q ss_pred HHHHHHHHHHHHhhcCCchHHhhhc-hHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q psy6156 66 NLVAIKMLTKVIEQNGKGPVELFLP-NIMPALLQAYENQDSCVRKCSVFCMVALYKEF 122 (176)
Q Consensus 66 ~~~aLkmLtklv~~~~~d~l~~~L~-~iiP~l~~a~~~~~s~VRKaaVfClVal~~~l 122 (176)
...+++.+..+++.. ++.+.++++ .++|.+..++.+...+||..|+..+..++...
T Consensus 234 r~~~~~~l~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~ 290 (462)
T 1ibr_B 234 RVAALQNLVKIMSLY-YQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEE 290 (462)
T ss_dssp HHHHHHHHHHHHHHC-GGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 889999999999654 567778899 99999999999999999999999888887653
No 20
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.46 E-value=0.00038 Score=53.26 Aligned_cols=87 Identities=17% Similarity=0.259 Sum_probs=51.3
Q ss_pred hHHHHHHHHhcChhHHHHHHHHHh--hcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHH
Q psy6156 20 NIMPALLQAYENQDSCVRKCSVFC--MVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALL 97 (176)
Q Consensus 20 ~iL~~LLd~~~d~e~~VrkAav~~--~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~ 97 (176)
..++.|++.+.|.+..||.+++.. .+.....++.|...+++.++.....|++.|.++-. ++.+|.+.
T Consensus 45 ~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~ 113 (201)
T 3ltj_A 45 RAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLI 113 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHH
Confidence 356666677777766677665322 23333456666666766666666777777666421 23455556
Q ss_pred HhhcCCChhHHHHHHHHHHH
Q psy6156 98 QAYENQDSCVRKCSVFCMVA 117 (176)
Q Consensus 98 ~a~~~~~s~VRKaaVfClVa 117 (176)
+.++|+++.||.+|+.++-.
T Consensus 114 ~~l~d~~~~vr~~a~~aL~~ 133 (201)
T 3ltj_A 114 KALKDEDWFVRIAAAFALGE 133 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHH
Confidence 66666666666666665543
No 21
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.34 E-value=0.00082 Score=51.75 Aligned_cols=85 Identities=18% Similarity=0.264 Sum_probs=37.3
Q ss_pred HHHHHHHHhcChhHHHHHHHHHh--hcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHH
Q psy6156 21 IMPALLQAYENQDSCVRKCSVFC--MVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQ 98 (176)
Q Consensus 21 iL~~LLd~~~d~e~~VrkAav~~--~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~ 98 (176)
.++.|++.+.|.+..||.+++.. .+.....++.|...+++.++.....|+..|.++-. ++.+|.|.+
T Consensus 51 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~ 119 (211)
T 3ltm_A 51 AVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIK 119 (211)
T ss_dssp GHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHH
Confidence 34444444444444444443211 11222334444444444444444444444443321 234455555
Q ss_pred hhcCCChhHHHHHHHHHH
Q psy6156 99 AYENQDSCVRKCSVFCMV 116 (176)
Q Consensus 99 a~~~~~s~VRKaaVfClV 116 (176)
.++|+++.||.+|+.++-
T Consensus 120 ~l~d~~~~vr~~a~~aL~ 137 (211)
T 3ltm_A 120 ALKDEDWFVRIAAAFALG 137 (211)
T ss_dssp HTTCSSHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHH
Confidence 555555555555555554
No 22
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.29 E-value=0.0025 Score=49.22 Aligned_cols=105 Identities=13% Similarity=0.083 Sum_probs=80.1
Q ss_pred hHHHHHHHHhcChhHHHHHHHHHh-----hcChHH--------HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHH
Q psy6156 20 NIMPALLQAYENQDSCVRKCSVFC-----MVALYK--------VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVE 86 (176)
Q Consensus 20 ~iL~~LLd~~~d~e~~VrkAav~~-----~v~p~~--------~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~ 86 (176)
..++.|++...+.+.-+++.+... .-++.. .++.|..++.+.++.....|+..|..+.. .+++...
T Consensus 128 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~ 206 (252)
T 4hxt_A 128 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPTSAIK 206 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT-SBHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 478899999988776666654221 123332 77888888998888899999999999984 3343333
Q ss_pred hhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156 87 LFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 87 ~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~ 125 (176)
... ..++|.+.+.+++.+++||+.|..++-.+...-+++
T Consensus 207 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 207 AIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 333 578999999999999999999999999998877666
No 23
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.27 E-value=0.0018 Score=49.43 Aligned_cols=96 Identities=16% Similarity=0.275 Sum_probs=69.9
Q ss_pred HHHHHHHHhcChhHHHHHHHHHh--hcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHH
Q psy6156 21 IMPALLQAYENQDSCVRKCSVFC--MVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQ 98 (176)
Q Consensus 21 iL~~LLd~~~d~e~~VrkAav~~--~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~ 98 (176)
.++.|++.+.|.+..||.+++.. .+.....+..|...+++.++.....|+..|.++-. ++.+|.|.+
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~ 145 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----------ERAVEPLIK 145 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----------GGGHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------HHHHHHHHH
Confidence 56777788888888888876433 23344577778888888888888888888877631 467788888
Q ss_pred hhcCCChhHHHHHHHHHHHHHHHhcCCcccccc
Q psy6156 99 AYENQDSCVRKCSVFCMVALYKEFGESVLSPYI 131 (176)
Q Consensus 99 a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L 131 (176)
.++|+++.||.+|+.++-.+ |.++..|.|
T Consensus 146 ~l~d~~~~vr~~A~~aL~~~----~~~~~~~~L 174 (201)
T 3ltj_A 146 ALKDEDGWVRQSAADALGEI----GGERVRAAM 174 (201)
T ss_dssp HTTCSSHHHHHHHHHHHHHH----CSHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHh----CchhHHHHH
Confidence 88899999999998888765 554444433
No 24
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.18 E-value=0.0024 Score=46.24 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=65.1
Q ss_pred HHHHHHHhcChhHHHHHHHHHh--hcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHh
Q psy6156 22 MPALLQAYENQDSCVRKCSVFC--MVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQA 99 (176)
Q Consensus 22 L~~LLd~~~d~e~~VrkAav~~--~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a 99 (176)
++.|++..+|.+..||.+++.. .+.-...+..|...+++.+|.....|+..|.++-. ++.+|.|.+.
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~ 112 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKL 112 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHH
Confidence 4888888889888888876433 23334577888888888889888899988887631 3568888999
Q ss_pred hcCCChhHHHHHHHHH
Q psy6156 100 YENQDSCVRKCSVFCM 115 (176)
Q Consensus 100 ~~~~~s~VRKaaVfCl 115 (176)
++|+++.||.+|+.++
T Consensus 113 l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 113 AETGTGFARKVAVNYL 128 (131)
T ss_dssp TTSCCTHHHHHHHHHG
T ss_pred HhCCCHHHHHHHHHHH
Confidence 9999999999998876
No 25
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.17 E-value=0.0025 Score=48.91 Aligned_cols=98 Identities=15% Similarity=0.274 Sum_probs=75.3
Q ss_pred hHHHHHHHHhcChhHHHHHHHHHh--hcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHH
Q psy6156 20 NIMPALLQAYENQDSCVRKCSVFC--MVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALL 97 (176)
Q Consensus 20 ~iL~~LLd~~~d~e~~VrkAav~~--~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~ 97 (176)
..++.|++.++|.+..||.+++.. .+.-...+..|...+++.++.....|+..|.++-. ++.+|.|.
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~ 149 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----------ERAVEPLI 149 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----------HHHHHHHH
Confidence 367888888899888899887433 23344577888888999899999999999988731 35788899
Q ss_pred HhhcCCChhHHHHHHHHHHHHHHHhcCCccccccc
Q psy6156 98 QAYENQDSCVRKCSVFCMVALYKEFGESVLSPYIN 132 (176)
Q Consensus 98 ~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~ 132 (176)
+.++|+++.||.+|+.++-.+ |.++..|.|.
T Consensus 150 ~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~ 180 (211)
T 3ltm_A 150 KALKDEDGWVRQSAADALGEI----GGERVRAAME 180 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHH----CSHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHh----CchhHHHHHH
Confidence 999999999999999998865 5544444443
No 26
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.10 E-value=0.0025 Score=48.56 Aligned_cols=100 Identities=14% Similarity=0.270 Sum_probs=76.0
Q ss_pred hHHHHHHHHhcChhHHHHHHHHHhh-----cChHH--------HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHH
Q psy6156 20 NIMPALLQAYENQDSCVRKCSVFCM-----VALYK--------VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVE 86 (176)
Q Consensus 20 ~iL~~LLd~~~d~e~~VrkAav~~~-----v~p~~--------~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~ 86 (176)
..+|.|++...+.+..+|+.+.... -.++. .++.|...+++.++.....|+..|..+. ..+++...
T Consensus 54 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~-~~~~~~~~ 132 (210)
T 4db6_A 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA-SGGNEQIQ 132 (210)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT-TSCHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHH-cCCHHHHH
Confidence 4789999999888777777652221 12332 5677888888888888889999999998 34444443
Q ss_pred hhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156 87 LFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 87 ~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~ 120 (176)
..+ ...+|.|++.+++.+.+||+.|++|+-.++.
T Consensus 133 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 433 5799999999999999999999999998874
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.05 E-value=0.0029 Score=53.33 Aligned_cols=104 Identities=12% Similarity=0.114 Sum_probs=76.4
Q ss_pred hchHhhHHHHHHHHhcChhHHHHHHHHHh-----hcChH--------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcC
Q psy6156 15 ELFLPNIMPALLQAYENQDSCVRKCSVFC-----MVALY--------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNG 81 (176)
Q Consensus 15 e~~l~~iL~~LLd~~~d~e~~VrkAav~~-----~v~p~--------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~ 81 (176)
...+..++|.|++...+.+..++..+... ...++ .+++.|...+.+.++.....|+..|..+... .
T Consensus 187 ~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~ 265 (450)
T 2jdq_A 187 FAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG-D 265 (450)
T ss_dssp GGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-C
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhC-C
Confidence 34557889999999988776666654211 11222 2677777888888899999999999999843 3
Q ss_pred CchHHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156 82 KGPVELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 82 ~d~l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~ 119 (176)
.+.....+ ..++|.+.+.+++.++.||++|++++-.+.
T Consensus 266 ~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~ 304 (450)
T 2jdq_A 266 DIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNIT 304 (450)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 33333333 369999999999999999999999997765
No 28
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.96 E-value=0.0042 Score=52.27 Aligned_cols=101 Identities=14% Similarity=0.193 Sum_probs=77.7
Q ss_pred hHHHHHHHHhcChhHHHHHHHHHh-----hcChH--------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHH
Q psy6156 20 NIMPALLQAYENQDSCVRKCSVFC-----MVALY--------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVE 86 (176)
Q Consensus 20 ~iL~~LLd~~~d~e~~VrkAav~~-----~v~p~--------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~ 86 (176)
.++|.|++...+.+..+|.+++.. .-.++ ..++.|..++++.++.....|+..|..+. ..+++...
T Consensus 234 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~-~~~~~~~~ 312 (450)
T 2jdq_A 234 GVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNIT-AGNRAQIQ 312 (450)
T ss_dssp TTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHT-TSCHHHHH
T ss_pred CcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCCHHHHH
Confidence 478899999988877777765221 11222 36777888888888999999999999998 34455555
Q ss_pred hhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156 87 LFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYKE 121 (176)
Q Consensus 87 ~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~ 121 (176)
..+ ..++|.+.+.+.+.+++||++|.+++..+...
T Consensus 313 ~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 313 TVIDANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 445 48999999999999999999999999988754
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.95 E-value=0.007 Score=47.25 Aligned_cols=98 Identities=14% Similarity=0.260 Sum_probs=74.9
Q ss_pred HHHHHHHHhcChhHHHHHHHHHh-----hcChHH--------HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHh
Q psy6156 21 IMPALLQAYENQDSCVRKCSVFC-----MVALYK--------VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVEL 87 (176)
Q Consensus 21 iL~~LLd~~~d~e~~VrkAav~~-----~v~p~~--------~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~ 87 (176)
.+|.|++...+.+..+|+.+... .-++.. .++.|...+++.++.....|+..|..+. ..+++....
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~-~~~~~~~~~ 175 (252)
T 4db8_A 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA-SGGNEQIQA 175 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHT-TSCHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH-cCChHHHHH
Confidence 78999999988777777765221 122222 6778888888888889999999999998 334443333
Q ss_pred hh-chHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156 88 FL-PNIMPALLQAYENQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 88 ~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~ 119 (176)
.. ...+|.|++.+++.+.+||+.|..++-.++
T Consensus 176 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 176 VIDAGALPALVQLLSSPNEQILQEALWALSNIA 208 (252)
T ss_dssp HHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 33 688999999999999999999999998886
No 30
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.90 E-value=0.0064 Score=53.35 Aligned_cols=105 Identities=10% Similarity=0.188 Sum_probs=77.9
Q ss_pred hchHhhHHHHHHHHhcChhHHHHHHHHHh-----hcChH--------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcC
Q psy6156 15 ELFLPNIMPALLQAYENQDSCVRKCSVFC-----MVALY--------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNG 81 (176)
Q Consensus 15 e~~l~~iL~~LLd~~~d~e~~VrkAav~~-----~v~p~--------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~ 81 (176)
......++|.|++...+.+..|+..+... .-+++ .+++.|...+.+.+|.....|+..|..++. .+
T Consensus 252 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~-~~ 330 (530)
T 1wa5_B 252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT-GN 330 (530)
T ss_dssp HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT-SC
T ss_pred HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHc-CC
Confidence 34556789999999988776676654221 12232 356778888888899999999999999983 33
Q ss_pred CchHHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156 82 KGPVELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 82 ~d~l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~ 120 (176)
.+.....+ ..++|.+...+.+.++.||++|++++-.+..
T Consensus 331 ~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 331 DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370 (530)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 33333333 4799999999999999999999999988763
No 31
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.85 E-value=0.0052 Score=49.21 Aligned_cols=89 Identities=11% Similarity=0.106 Sum_probs=46.6
Q ss_pred hHHHHHHHHhcChhHHHHHHHHHh--hcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHH
Q psy6156 20 NIMPALLQAYENQDSCVRKCSVFC--MVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALL 97 (176)
Q Consensus 20 ~iL~~LLd~~~d~e~~VrkAav~~--~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~ 97 (176)
.+++.|+....|.+..||.++... .+.....+..|...+++.++.....|+..|.++- . .-+..+|.+.
T Consensus 128 ~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~-----~~~~~~~~L~ 198 (280)
T 1oyz_A 128 KIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININK----Y-----DNSDIRDCFV 198 (280)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHT----C-----CCHHHHHHHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhc----c-----CcHHHHHHHH
Confidence 345555555555555555544222 1222234555555555555555555555554431 0 1235566677
Q ss_pred HhhcCCChhHHHHHHHHHHH
Q psy6156 98 QAYENQDSCVRKCSVFCMVA 117 (176)
Q Consensus 98 ~a~~~~~s~VRKaaVfClVa 117 (176)
+.++|.++.||++|+.++-.
T Consensus 199 ~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 199 EMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp HHTTCSCHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHH
Confidence 77777777777777766643
No 32
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.84 E-value=0.0063 Score=47.54 Aligned_cols=100 Identities=14% Similarity=0.266 Sum_probs=73.4
Q ss_pred hHHHHHHHHhcChhHHHHHHHHHh--hc---ChH--------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHH
Q psy6156 20 NIMPALLQAYENQDSCVRKCSVFC--MV---ALY--------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVE 86 (176)
Q Consensus 20 ~iL~~LLd~~~d~e~~VrkAav~~--~v---~p~--------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~ 86 (176)
..+|.|++...+.+..++..+... .+ .++ ..++.|...+++.++.....|+..|..+.. .......
T Consensus 54 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~ 132 (252)
T 4db8_A 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQ 132 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT-SCHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCchHHH
Confidence 478899999988776666654221 11 222 167778888888888888899999999873 2222212
Q ss_pred hhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156 87 LFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 87 ~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~ 120 (176)
... ...+|.+++.+++.+..||+.|.+|+..+..
T Consensus 133 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 167 (252)
T 4db8_A 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 233 4689999999999999999999999988764
No 33
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.83 E-value=0.0042 Score=47.94 Aligned_cols=100 Identities=14% Similarity=0.155 Sum_probs=74.8
Q ss_pred hHHHHHHHHhcChhHHHHHHHHHh---h--cChH--------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHH
Q psy6156 20 NIMPALLQAYENQDSCVRKCSVFC---M--VALY--------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVE 86 (176)
Q Consensus 20 ~iL~~LLd~~~d~e~~VrkAav~~---~--v~p~--------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~ 86 (176)
..++.|++...+.+..++..+... + ..++ ..++.|...+.+.++.....|+..|..+... +++...
T Consensus 86 ~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~-~~~~~~ 164 (252)
T 4hxt_A 86 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIK 164 (252)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHH
Confidence 368888999888777677654211 1 2232 2677888888888888999999999999843 333322
Q ss_pred hhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156 87 LFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 87 ~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~ 120 (176)
... ...+|.+.+.+++.+++||+.|.+|+-.++.
T Consensus 165 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 165 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 222 5799999999999999999999999988874
No 34
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.71 E-value=0.00056 Score=49.69 Aligned_cols=96 Identities=10% Similarity=0.078 Sum_probs=59.5
Q ss_pred CCchhchHhhHHHHHHHHhcChhHHHHHHHHHhh--cChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhh
Q psy6156 11 KGPVELFLPNIMPALLQAYENQDSCVRKCSVFCM--VALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELF 88 (176)
Q Consensus 11 ~~~~e~~l~~iL~~LLd~~~d~e~~VrkAav~~~--v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~ 88 (176)
+.+...+-...++.++...+|.+..||.+++..+ +.... +..|...+++.++.....|+..|.++-.
T Consensus 3 ~~~~~~~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~---------- 71 (131)
T 1te4_A 3 SSHHHHHHSSGLVPRGSHMADENKWVRRDVSTALSRMGDEA-FEPLLESLSNEDWRIRGAAAWIIGNFQD---------- 71 (131)
T ss_dssp ------------------CCSSCCCSSSSCCSSTTSCSSTT-HHHHHHGGGCSCHHHHHHHHHHHGGGCS----------
T ss_pred cccccccccccHHHHHHHhcCCCHHHHHHHHHHHHHhCchH-HHHHHHHHcCCCHHHHHHHHHHHHhcCC----------
Confidence 3445556667888899999998888888763322 22222 5788888888888888888888766431
Q ss_pred hchHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy6156 89 LPNIMPALLQAYENQDSCVRKCSVFCMVAL 118 (176)
Q Consensus 89 L~~iiP~l~~a~~~~~s~VRKaaVfClVal 118 (176)
+..+|.|.+.++|+++.||.+|+.++-.+
T Consensus 72 -~~a~~~L~~~L~d~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 72 -ERAVEPLIKLLEDDSGFVRSGAARSLEQI 100 (131)
T ss_dssp -HHHHHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 35688899999999999999999998754
No 35
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.70 E-value=0.0099 Score=54.11 Aligned_cols=72 Identities=11% Similarity=0.076 Sum_probs=55.7
Q ss_pred ChHHHH---HhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q psy6156 46 ALYKVT---RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEF 122 (176)
Q Consensus 46 ~p~~~l---~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~l 122 (176)
.|+..+ +.|.--+++.++-....|++.|..+.. .+..+.++|.+.+++.|+++.|||+|++|+..+|..-
T Consensus 101 ~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-------~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~ 173 (618)
T 1w63_A 101 RQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS-------SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV 173 (618)
T ss_dssp CHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-------HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC
Confidence 455433 344444566677777889999998861 2356789999999999999999999999999999865
Q ss_pred cC
Q psy6156 123 GE 124 (176)
Q Consensus 123 Ge 124 (176)
.+
T Consensus 174 p~ 175 (618)
T 1w63_A 174 PE 175 (618)
T ss_dssp GG
T ss_pred hH
Confidence 54
No 36
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.66 E-value=0.016 Score=44.05 Aligned_cols=98 Identities=14% Similarity=0.156 Sum_probs=73.0
Q ss_pred HHHHHHHHhcChhHHHHHHHHHh--h---cChHH--------HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHh
Q psy6156 21 IMPALLQAYENQDSCVRKCSVFC--M---VALYK--------VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVEL 87 (176)
Q Consensus 21 iL~~LLd~~~d~e~~VrkAav~~--~---v~p~~--------~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~ 87 (176)
.+|.|++...+.+..+++.+... . -.++. .++.|...+++.+......|+..|..++. .+++....
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~-~~~~~~~~ 175 (210)
T 4db6_A 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQKQA 175 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT-SCHHHHHH
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc-CCcHHHHH
Confidence 78899999998876666654211 1 12222 57788888888888888899999999984 33433333
Q ss_pred hh-chHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156 88 FL-PNIMPALLQAYENQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 88 ~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~ 119 (176)
.. ...+|.|.+.+++.+++||+.|..++-.++
T Consensus 176 ~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 176 VKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 32 478999999999999999999999987663
No 37
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.65 E-value=0.0049 Score=55.64 Aligned_cols=93 Identities=13% Similarity=0.229 Sum_probs=60.0
Q ss_pred HHHHHHHHhcChhHHHHHHH-H----HhhcChHHHHHhh---hhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchH
Q psy6156 21 IMPALLQAYENQDSCVRKCS-V----FCMVALYKVTRIL---FPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNI 92 (176)
Q Consensus 21 iL~~LLd~~~d~e~~VrkAa-v----~~~v~p~~~l~vL---~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~i 92 (176)
.++.++..+.+.+..+|+.+ + +....|+..+-+. ..-+++.++.....|++.|..+. ..+..+.+
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-------~~~~~~~l 122 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR-------VDKITEYL 122 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-------SGGGHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-------hHHHHHHH
Confidence 34455566777777777764 1 1112455433333 33355666667777877776653 23355677
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156 93 MPALLQAYENQDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 93 iP~l~~a~~~~~s~VRKaaVfClVal~~ 120 (176)
+|.+.++..|+++.|||+|+.|+..+|.
T Consensus 123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~ 150 (591)
T 2vgl_B 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHD 150 (591)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHh
Confidence 8888888888888888888888888887
No 38
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.53 E-value=0.0061 Score=53.47 Aligned_cols=102 Identities=13% Similarity=0.159 Sum_probs=79.0
Q ss_pred hHHHHHHHHhcChhHHHHHHHHHh--hc---ChH--------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHH
Q psy6156 20 NIMPALLQAYENQDSCVRKCSVFC--MV---ALY--------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVE 86 (176)
Q Consensus 20 ~iL~~LLd~~~d~e~~VrkAav~~--~v---~p~--------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~ 86 (176)
.++|.|++...+.+..||.+++.. .+ .++ ..++.|..++++.+|.....|+..|..+. ..+++...
T Consensus 299 ~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~-~~~~~~~~ 377 (530)
T 1wa5_B 299 RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNIT-AGNTEQIQ 377 (530)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT-TSCHHHHH
T ss_pred CcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCCHHHHH
Confidence 578899999988877777765221 11 122 36777888888889999999999999998 44555555
Q ss_pred hhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q psy6156 87 LFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYKEF 122 (176)
Q Consensus 87 ~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~l 122 (176)
..+ ..++|.|++.+.+.+.+||++|.+++-.+....
T Consensus 378 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 414 (530)
T 1wa5_B 378 AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGG 414 (530)
T ss_dssp HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 555 479999999999999999999999999887653
No 39
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.52 E-value=0.0076 Score=55.26 Aligned_cols=95 Identities=8% Similarity=0.122 Sum_probs=66.4
Q ss_pred HHHHHHHhcChhHHHHHHH-----HHhhcChHHHHHhhhhh---hhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHH
Q psy6156 22 MPALLQAYENQDSCVRKCS-----VFCMVALYKVTRILFPL---IIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIM 93 (176)
Q Consensus 22 L~~LLd~~~d~e~~VrkAa-----v~~~v~p~~~l~vL~p~---l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~ii 93 (176)
.+.++..+.+++-..++.. ....-.|+..+-+...+ +++.++-..-.||+.|..+.. .+..+.++
T Consensus 76 ~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~-------~e~~~~l~ 148 (621)
T 2vgl_A 76 HMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGS-------REMAEAFA 148 (621)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-------HHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC-------HHHHHHHH
Confidence 3444555555566666654 11123455544444444 455566667789999999862 44678999
Q ss_pred HHHHHhh--cCCChhHHHHHHHHHHHHHHHhc
Q psy6156 94 PALLQAY--ENQDSCVRKCSVFCMVALYKEFG 123 (176)
Q Consensus 94 P~l~~a~--~~~~s~VRKaaVfClVal~~~lG 123 (176)
|.+.+++ .|.++.|||+|+.|+..+|..-.
T Consensus 149 ~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p 180 (621)
T 2vgl_A 149 GEIPKILVAGDTMDSVKQSAALCLLRLYRTSP 180 (621)
T ss_dssp THHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh
Confidence 9999999 99999999999999999998543
No 40
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.43 E-value=0.0043 Score=53.95 Aligned_cols=106 Identities=15% Similarity=0.180 Sum_probs=75.0
Q ss_pred hhHHHHHHHHhcChhHHHHHHH--HHhhcC--hHHHHHhhhhhh---hccCcchHHHHHHHHHHHHhhcCCchHHhhhch
Q psy6156 19 PNIMPALLQAYENQDSCVRKCS--VFCMVA--LYKVTRILFPLI---IAEEHPINLVAIKMLTKVIEQNGKGPVELFLPN 91 (176)
Q Consensus 19 ~~iL~~LLd~~~d~e~~VrkAa--v~~~v~--p~~~l~vL~p~l---~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~ 91 (176)
-.+.+.++.++..++-.+|+-. -++.++ ++.++=+...+. ++.++-..-.||+.|.++. ..+.+..
T Consensus 67 t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~-------~~~m~~~ 139 (355)
T 3tjz_B 67 TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQIT-------DSTMLQA 139 (355)
T ss_dssp HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHC-------CTTTHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCC-------CHHHHHH
Confidence 3678888888888888888854 111122 344554444443 4445555567999999987 3446788
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccc
Q psy6156 92 IMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYIN 132 (176)
Q Consensus 92 iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~ 132 (176)
+.|.+.+++.|.++.|||+|++|...++..-.|- ++.+++
T Consensus 140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~-v~~~~~ 179 (355)
T 3tjz_B 140 IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV-VKRWVN 179 (355)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH-HHTTHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH-HHHHHH
Confidence 9999999999999999999999998887665554 444444
No 41
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.11 E-value=0.039 Score=48.09 Aligned_cols=104 Identities=13% Similarity=0.205 Sum_probs=77.6
Q ss_pred chHhhHHHHHHHHhcChhHHHHHHHHHh-----hcChH--------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCC
Q psy6156 16 LFLPNIMPALLQAYENQDSCVRKCSVFC-----MVALY--------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGK 82 (176)
Q Consensus 16 ~~l~~iL~~LLd~~~d~e~~VrkAav~~-----~v~p~--------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~ 82 (176)
.....++|.|++...+.+.-|+..+... .-+.. .+++.|..++.+.++.....|+..|..++ ..+.
T Consensus 240 ~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~-~~~~ 318 (528)
T 4b8j_A 240 EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV-TGDD 318 (528)
T ss_dssp HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT-TSCH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHH-cCCH
Confidence 4456789999999988776666654221 11222 25677888888888889999999999998 3344
Q ss_pred chHHhhh-chHHHHHHHhhcCC-ChhHHHHHHHHHHHHHH
Q psy6156 83 GPVELFL-PNIMPALLQAYENQ-DSCVRKCSVFCMVALYK 120 (176)
Q Consensus 83 d~l~~~L-~~iiP~l~~a~~~~-~s~VRKaaVfClVal~~ 120 (176)
+.....+ ..++|.|...+.+. ++.||+.|++++-.+..
T Consensus 319 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 319 AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp HHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 4444444 57899999999999 99999999999988864
No 42
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.10 E-value=0.041 Score=43.87 Aligned_cols=91 Identities=14% Similarity=0.221 Sum_probs=47.6
Q ss_pred HHHHHHHHhcChhHHHHHHHHHhh--cC-hH----HHHHhhhh-hhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchH
Q psy6156 21 IMPALLQAYENQDSCVRKCSVFCM--VA-LY----KVTRILFP-LIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNI 92 (176)
Q Consensus 21 iL~~LLd~~~d~e~~VrkAav~~~--v~-p~----~~l~vL~p-~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~i 92 (176)
.++.|++...|.+..||.++...+ +. +. ..++.|.. .+++.++.....++..|.++....+ ..-+.+
T Consensus 55 ~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~-----~~~~~~ 129 (280)
T 1oyz_A 55 AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP-----IYSPKI 129 (280)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-----GGHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-----cccHHH
Confidence 566777777777777777653222 21 11 13333332 2345566666677777776642211 112344
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHH
Q psy6156 93 MPALLQAYENQDSCVRKCSVFCMV 116 (176)
Q Consensus 93 iP~l~~a~~~~~s~VRKaaVfClV 116 (176)
+|.+.+.++|+++.||.+|+.++-
T Consensus 130 ~~~L~~~l~d~~~~vR~~a~~aL~ 153 (280)
T 1oyz_A 130 VEQSQITAFDKSTNVRRATAFAIS 153 (280)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHH
Confidence 555555555555555555555554
No 43
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=95.84 E-value=0.042 Score=47.85 Aligned_cols=101 Identities=13% Similarity=0.189 Sum_probs=72.4
Q ss_pred hHHHHHHHHhcChh-HHHHHHHHHhh-----cChH--------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchH
Q psy6156 20 NIMPALLQAYENQD-SCVRKCSVFCM-----VALY--------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPV 85 (176)
Q Consensus 20 ~iL~~LLd~~~d~e-~~VrkAav~~~-----v~p~--------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l 85 (176)
.++|.|++...+.+ ..+|..+.... -.++ ..++.|..++.+.++.....|+..|..+... +++.-
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~-~~~~~ 195 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGD-SPKCR 195 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHT-CHHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-ChhhH
Confidence 57899999998775 66666542221 1232 2677777888888888888899999999842 22212
Q ss_pred Hhhh-chHHHHHHHhh-cCCChhHHHHHHHHHHHHHHH
Q psy6156 86 ELFL-PNIMPALLQAY-ENQDSCVRKCSVFCMVALYKE 121 (176)
Q Consensus 86 ~~~L-~~iiP~l~~a~-~~~~s~VRKaaVfClVal~~~ 121 (176)
...+ ...+|.|++.+ ++.+.+|++.|++|+..++..
T Consensus 196 ~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 196 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 2222 26899999999 789999999999999988753
No 44
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=95.78 E-value=0.039 Score=49.70 Aligned_cols=101 Identities=13% Similarity=0.119 Sum_probs=74.6
Q ss_pred HhhHHHHHHHHhcChhHHHHHHHHHh--hcChHH----HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhch
Q psy6156 18 LPNIMPALLQAYENQDSCVRKCSVFC--MVALYK----VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPN 91 (176)
Q Consensus 18 l~~iL~~LLd~~~d~e~~VrkAav~~--~v~p~~----~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~ 91 (176)
...+++.+.....|.+..+|..|+-. .+.... ++..+...+.+.++-....|...+.++. +.++|.+.. +.
T Consensus 84 ~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~-~~~p~~~~~--~~ 160 (591)
T 2vgl_B 84 AIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLH-DINAQMVED--QG 160 (591)
T ss_dssp HHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHH-HSSCCCHHH--HH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-hhChhhccc--cc
Confidence 34456666667778888888876322 222233 3444555667778888889999999999 467776643 57
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156 92 IMPALLQAYENQDSCVRKCSVFCMVALYKE 121 (176)
Q Consensus 92 iiP~l~~a~~~~~s~VRKaaVfClVal~~~ 121 (176)
++|.+.+.++|+++.||.+|+.++-.++..
T Consensus 161 ~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 161 FLDSLRDLIADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp HHHHHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence 999999999999999999999999886543
No 45
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.58 E-value=0.014 Score=48.87 Aligned_cols=81 Identities=11% Similarity=0.132 Sum_probs=66.0
Q ss_pred HHhhhhhhh----ccCcchHHHHHHHHHHHHhhcCCc---hHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhc
Q psy6156 51 TRILFPLII----AEEHPINLVAIKMLTKVIEQNGKG---PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFG 123 (176)
Q Consensus 51 l~vL~p~l~----~~~~~~~~~aLkmLtklv~~~~~d---~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lG 123 (176)
+..+..++. +.+......++.+|+.+++++... ........++|.|++-+.|++..||.++.-++..++.+.+
T Consensus 85 lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~ 164 (266)
T 2of3_A 85 SDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG 164 (266)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC
Confidence 334566654 667888889999999998777554 3455678999999999999999999999999999998887
Q ss_pred CCcccccc
Q psy6156 124 ESVLSPYI 131 (176)
Q Consensus 124 e~~l~P~L 131 (176)
...+.+|+
T Consensus 165 ~~~v~~~l 172 (266)
T 2of3_A 165 PLKMTPML 172 (266)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777777
No 46
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.11 E-value=0.071 Score=50.50 Aligned_cols=103 Identities=11% Similarity=0.116 Sum_probs=78.2
Q ss_pred hHHHHHHHHHh------hcChHH---HHHhhhhhhhccCcchHHHHHHHHHHHHhhc----------CCchHHhhhchHH
Q psy6156 33 DSCVRKCSVFC------MVALYK---VTRILFPLIIAEEHPINLVAIKMLTKVIEQN----------GKGPVELFLPNIM 93 (176)
Q Consensus 33 e~~VrkAav~~------~v~p~~---~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~----------~~d~l~~~L~~ii 93 (176)
...||.++.+. .++++. +++.+...+.+.+.+....|...+..+++.. .++.+.++++.++
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll 550 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILL 550 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHH
T ss_pred CceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHH
Confidence 67888876322 235543 5555556667767788899999999998743 3567889999999
Q ss_pred HHHHHhhcCC-----ChhHHHHHHHHHHHHHHHhcCCccccccccCcH
Q psy6156 94 PALLQAYENQ-----DSCVRKCSVFCMVALYKEFGESVLSPYINKLSG 136 (176)
Q Consensus 94 P~l~~a~~~~-----~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~ 136 (176)
+.+...++.. +......+..|+-.+....|++ +.||+..+-+
T Consensus 551 ~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~-~~p~~~~l~~ 597 (960)
T 1wa5_C 551 KNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDS-IQPLFPQLLA 597 (960)
T ss_dssp HHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTT-TGGGHHHHHH
T ss_pred HHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHh-hhhHHHHHHH
Confidence 9999999885 2335568899999999999987 9999987664
No 47
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=94.84 E-value=0.055 Score=50.96 Aligned_cols=129 Identities=12% Similarity=0.204 Sum_probs=80.5
Q ss_pred HHHHHhCCCchhchHhhHHHHHHHHhcCh--hHHHHH----H--HHHhhcChHHHHH----hhhhhhh-------cc--C
Q psy6156 4 KVIEQNGKGPVELFLPNIMPALLQAYENQ--DSCVRK----C--SVFCMVALYKVTR----ILFPLII-------AE--E 62 (176)
Q Consensus 4 ~~~e~~~~~~~e~~l~~iL~~LLd~~~d~--e~~Vrk----A--av~~~v~p~~~l~----vL~p~l~-------~~--~ 62 (176)
.+.+..+ +.+.||++.++..+.+..... +.-.+. | .++..++++...+ .+.|+++ .. +
T Consensus 569 ~l~~~~~-~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~ 647 (971)
T 2x1g_F 569 ELCRDCQ-LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKT 647 (971)
T ss_dssp HHHHHCH-HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---C
T ss_pred HHHHHHH-HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4454444 347899999999888887752 222222 2 1444455343222 2233321 11 1
Q ss_pred c---chHHHHHHHHHHHHhhcC------------CchHHhhhchHHHHHHHhhcC--CChhHHHHHHHHHHHHHHHhcCC
Q psy6156 63 H---PINLVAIKMLTKVIEQNG------------KGPVELFLPNIMPALLQAYEN--QDSCVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 63 ~---~~~~~aLkmLtklv~~~~------------~d~l~~~L~~iiP~l~~a~~~--~~s~VRKaaVfClVal~~~lGe~ 125 (176)
. .....++.+|++++...+ ++.+....+.++|.+.+.+++ .+++|..++..++=.+...+|++
T Consensus 648 ~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~ 727 (971)
T 2x1g_F 648 PAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSS 727 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhh
Confidence 1 233457888888876554 346777889999998888754 36799999999999999999998
Q ss_pred ccccccccC
Q psy6156 126 VLSPYINKL 134 (176)
Q Consensus 126 ~l~P~L~~L 134 (176)
+.||++.+
T Consensus 728 -~~p~l~~~ 735 (971)
T 2x1g_F 728 -FQPMLQDL 735 (971)
T ss_dssp --CTHHHHH
T ss_pred -ccccHHHH
Confidence 99997643
No 48
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=94.83 E-value=0.11 Score=45.85 Aligned_cols=99 Identities=9% Similarity=0.145 Sum_probs=71.0
Q ss_pred HHHHHHHHhcChhHHHHHHHHHh-----hcChHH--------HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHh
Q psy6156 21 IMPALLQAYENQDSCVRKCSVFC-----MVALYK--------VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVEL 87 (176)
Q Consensus 21 iL~~LLd~~~d~e~~VrkAav~~-----~v~p~~--------~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~ 87 (176)
++|.|++...+.+..++..++.. .-..+. .++.|..++.+.+......|...|..+. ..+.+....
T Consensus 275 ~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~-a~~~~~~~~ 353 (510)
T 3ul1_B 275 VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT-AGRQDQIQQ 353 (510)
T ss_dssp CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHT-TSCHHHHHH
T ss_pred cchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHH-cCcHHHHHH
Confidence 67888888887766666544211 122222 4556667778888778888999999887 445555544
Q ss_pred hh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156 88 FL-PNIMPALLQAYENQDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 88 ~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~ 120 (176)
.. ..++|.+++.+.+.+.+|||.|.+++..+..
T Consensus 354 v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 354 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 44 3799999999999999999999999987754
No 49
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=94.81 E-value=0.16 Score=44.83 Aligned_cols=100 Identities=9% Similarity=0.157 Sum_probs=72.8
Q ss_pred hHHHHHHHHhcChhHHHHHHHHHh-----hcChHH--------HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHH
Q psy6156 20 NIMPALLQAYENQDSCVRKCSVFC-----MVALYK--------VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVE 86 (176)
Q Consensus 20 ~iL~~LLd~~~d~e~~VrkAav~~-----~v~p~~--------~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~ 86 (176)
.++|.|++...+.+..|+..++.. .-.++. .++.|..++.+.+......|...|..+. ..+++...
T Consensus 293 g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~-~~~~~~~~ 371 (529)
T 3tpo_A 293 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT-AGRQDQIQ 371 (529)
T ss_dssp TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHH-TSCHHHHH
T ss_pred cchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHh-cccHHHHH
Confidence 367888888888776666554211 112222 5667777888888878888888998887 44555555
Q ss_pred hhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156 87 LFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 87 ~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~ 120 (176)
... ..++|.++..+.+.+.+||+.|++++-.+..
T Consensus 372 ~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 372 QVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 444 3699999999999999999999999987754
No 50
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=94.72 E-value=0.1 Score=46.03 Aligned_cols=103 Identities=17% Similarity=0.240 Sum_probs=73.5
Q ss_pred hHhhHHHHHHHHhcChhHHHHHHHHHhh-----cChH--------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCc
Q psy6156 17 FLPNIMPALLQAYENQDSCVRKCSVFCM-----VALY--------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKG 83 (176)
Q Consensus 17 ~l~~iL~~LLd~~~d~e~~VrkAav~~~-----v~p~--------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d 83 (176)
....++|.|.+...+.+.-|+..+.++. -+.+ .+++.|..++.+.++.....|++.+..++ ..+.+
T Consensus 248 ~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~-~~~~~ 326 (529)
T 3tpo_A 248 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV-TGTDE 326 (529)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT-TSCHH
T ss_pred HHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHH-ccchH
Confidence 3457889999988877655554432211 1222 25567777888888888899999999987 33433
Q ss_pred hHHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156 84 PVELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 84 ~l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~ 120 (176)
.....+ ...+|.|...+.+++.+|||.|.+++-.++.
T Consensus 327 ~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~ 364 (529)
T 3tpo_A 327 QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA 364 (529)
T ss_dssp HHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 333333 4688999999999999999999999987753
No 51
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=94.61 E-value=0.17 Score=42.26 Aligned_cols=101 Identities=16% Similarity=0.144 Sum_probs=72.0
Q ss_pred hHHHHHHH-HhcChhHHHHHHHHHhh-----cChHH--------HHHhhhhhhhcc-CcchHHHHHHHHHHHHhhcCCch
Q psy6156 20 NIMPALLQ-AYENQDSCVRKCSVFCM-----VALYK--------VTRILFPLIIAE-EHPINLVAIKMLTKVIEQNGKGP 84 (176)
Q Consensus 20 ~iL~~LLd-~~~d~e~~VrkAav~~~-----v~p~~--------~l~vL~p~l~~~-~~~~~~~aLkmLtklv~~~~~d~ 84 (176)
-.+|.|++ ...+.+.-||+.|.++. -.|.. .++.|..+++++ +......|+..|..++ +..++.
T Consensus 81 G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~-~~~~~~ 159 (296)
T 1xqr_A 81 SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV-REQEAG 159 (296)
T ss_dssp THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHH-TTCHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHH-cCCcHH
Confidence 36788888 88887777777653322 23432 556666677754 5556677889999988 444443
Q ss_pred HHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156 85 VELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYKE 121 (176)
Q Consensus 85 l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~ 121 (176)
..... ...+|.|.+.+.+.+..|++.|.+++-.++..
T Consensus 160 ~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 160 LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 33333 36899999999999999999999999988754
No 52
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=94.58 E-value=0.21 Score=41.74 Aligned_cols=101 Identities=11% Similarity=0.152 Sum_probs=73.3
Q ss_pred hHHHHHHHHhc-ChhHHHHHHHH---Hhhc---ChH-------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchH
Q psy6156 20 NIMPALLQAYE-NQDSCVRKCSV---FCMV---ALY-------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPV 85 (176)
Q Consensus 20 ~iL~~LLd~~~-d~e~~VrkAav---~~~v---~p~-------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l 85 (176)
..+|.|++... +....+|+.++ ..++ ++. ..++.|..++++++.....-|...|..+... +++..
T Consensus 124 g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~ 202 (296)
T 1xqr_A 124 GALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHK 202 (296)
T ss_dssp THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGH
T ss_pred CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHH
Confidence 47888888887 33445555442 2221 221 1566777888888888888999999999855 66655
Q ss_pred Hhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156 86 ELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYKE 121 (176)
Q Consensus 86 ~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~ 121 (176)
.... ..++|.|+..+.+++.+||..|..++-.+...
T Consensus 203 ~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 203 GTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 5554 37999999999999999999999998877643
No 53
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=94.21 E-value=0.09 Score=49.28 Aligned_cols=99 Identities=13% Similarity=0.090 Sum_probs=70.2
Q ss_pred HhhHHHHHHHHhcChhHHHHHHHHHhhc---ChH---HHHHhhhhhhhcc-Cc-chHHHHHHHHHHHHhhcCCchHHhhh
Q psy6156 18 LPNIMPALLQAYENQDSCVRKCSVFCMV---ALY---KVTRILFPLIIAE-EH-PINLVAIKMLTKVIEQNGKGPVELFL 89 (176)
Q Consensus 18 l~~iL~~LLd~~~d~e~~VrkAav~~~v---~p~---~~l~vL~p~l~~~-~~-~~~~~aLkmLtklv~~~~~d~l~~~L 89 (176)
++.+++.++.+.+|.++=||.+|-.+.+ .|+ .++.+|-..+.+- |- ...-..+.+|.+++. .++. ...-
T Consensus 297 Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s-~p~~--a~~d 373 (800)
T 3oc3_A 297 KDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYR-ENPE--LSIP 373 (800)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHH-HCTT--CCCC
T ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHc-CCcc--cccC
Confidence 7889999999999998888876533332 222 2444444444332 32 445567999999984 4442 2344
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156 90 PNIMPALLQAYENQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 90 ~~iiP~l~~a~~~~~s~VRKaaVfClVal~ 119 (176)
|+++|.|.--++|+-++||+|++.|+-++.
T Consensus 374 p~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 374 PERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp SGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 699999999999999999999999997654
No 54
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=94.15 E-value=0.16 Score=47.46 Aligned_cols=101 Identities=10% Similarity=0.096 Sum_probs=71.9
Q ss_pred hhHHHHHHHHhcChhHHHHHHHHHhh--cC-----------hHHHHHhhhhhhhcc-CcchHHHHHHHHHHHHhhcC-Cc
Q psy6156 19 PNIMPALLQAYENQDSCVRKCSVFCM--VA-----------LYKVTRILFPLIIAE-EHPINLVAIKMLTKVIEQNG-KG 83 (176)
Q Consensus 19 ~~iL~~LLd~~~d~e~~VrkAav~~~--v~-----------p~~~l~vL~p~l~~~-~~~~~~~aLkmLtklv~~~~-~d 83 (176)
...+|.|+....+.+..||+.|+..+ +. -..++..|...+.++ +......|...|.++...-. .+
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~ 228 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLL 228 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHH
Confidence 45788888888877777777653222 11 124677777777665 66777888899888753211 11
Q ss_pred hHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156 84 PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKE 121 (176)
Q Consensus 84 ~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~ 121 (176)
.+.. ...+|.|++...+.+++||+.|+.||..++..
T Consensus 229 ~i~~--~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~ 264 (780)
T 2z6g_A 229 AIFK--SGGIPALVNMLGSPVDSVLFHAITTLHNLLLH 264 (780)
T ss_dssp HHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 2222 37899999999999999999999999999865
No 55
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=93.82 E-value=0.37 Score=46.08 Aligned_cols=118 Identities=14% Similarity=0.169 Sum_probs=79.6
Q ss_pred chHhhHHHHHHHHhcChhHHHHHHH------HHhhcC------------hH--HHHHhhhhhhhccCcchHHHHHHHHHH
Q psy6156 16 LFLPNIMPALLQAYENQDSCVRKCS------VFCMVA------------LY--KVTRILFPLIIAEEHPINLVAIKMLTK 75 (176)
Q Consensus 16 ~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~------------p~--~~l~vL~p~l~~~~~~~~~~aLkmLtk 75 (176)
+++..+++.++++..|....|+.+| ++.... |+ .++..|..+++.-+...+...++.+..
T Consensus 536 ~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ 615 (1049)
T 3m1i_C 536 NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGI 615 (1049)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6899999999999998777777654 111111 22 355555555555455556778899999
Q ss_pred HHhhcCC-chHHhhhchHHHHHHHhhcCC------------ChhHHHHH---HHHHHHHHHHhcCCccccccccC
Q psy6156 76 VIEQNGK-GPVELFLPNIMPALLQAYENQ------------DSCVRKCS---VFCMVALYKEFGESVLSPYINKL 134 (176)
Q Consensus 76 lv~~~~~-d~l~~~L~~iiP~l~~a~~~~------------~s~VRKaa---VfClVal~~~lGe~~l~P~L~~L 134 (176)
++...+. +...+.+..++|.+.+.++.. .++..++. ..|+..++..+|+. +.|++...
T Consensus 616 ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~-f~p~~~~i 689 (1049)
T 3m1i_C 616 IISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGAD-FYPQLGHI 689 (1049)
T ss_dssp HHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGG-GHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHH
Confidence 9977763 567888899998877655411 22333432 45889999999988 88887643
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.77 E-value=0.17 Score=49.43 Aligned_cols=133 Identities=15% Similarity=0.244 Sum_probs=82.6
Q ss_pred hHHHHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHHHHhhc---------ChHHHHHhhhhhhhccCcchHHHHHHHH
Q psy6156 3 TKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMV---------ALYKVTRILFPLIIAEEHPINLVAIKML 73 (176)
Q Consensus 3 t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAav~~~v---------~p~~~l~vL~p~l~~~~~~~~~~aLkmL 73 (176)
.++++.. ++.+...+..++|-+-+++-|.+.-|.+|+.-++. +.+..++.|..-+.+- ..--.+++.|
T Consensus 159 ~~~~~~~-~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p--~~~~~~~~~l 235 (986)
T 2iw3_A 159 SAMVDAA-KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP--TEVPETVHLL 235 (986)
T ss_dssp HHHHHHS-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCT--THHHHHHHHH
T ss_pred HHHHHHh-HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcCh--hhhHHHHHHh
Confidence 4455555 46677888888888888888888777776532221 2223344443333321 1111233333
Q ss_pred HHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC-ccccccccCcHHHHH
Q psy6156 74 TKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES-VLSPYINKLSGAKLK 140 (176)
Q Consensus 74 tklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~-~l~P~L~~L~~~k~k 140 (176)
.... .=.+--.+.|.-+.|-|.++++..+.++..-++--.=.||..+.++ +..|||+.|=|+=.|
T Consensus 236 ~~~t--fv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~ 301 (986)
T 2iw3_A 236 GATT--FVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKS 301 (986)
T ss_dssp TTCC--CCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHH
T ss_pred hcCe--eEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHH
Confidence 3321 1112235568889999999999877777544444455699999997 899999998887554
No 57
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=93.63 E-value=0.18 Score=44.33 Aligned_cols=102 Identities=17% Similarity=0.257 Sum_probs=72.4
Q ss_pred hHhhHHHHHHHHhcChhHHHHHHHHHh---h--cChHH--------HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCc
Q psy6156 17 FLPNIMPALLQAYENQDSCVRKCSVFC---M--VALYK--------VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKG 83 (176)
Q Consensus 17 ~l~~iL~~LLd~~~d~e~~VrkAav~~---~--v~p~~--------~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d 83 (176)
....++|.|.+...+.+.-|+..+..+ + -+.+. .++.|..++.+.+++....+++.+..++ ..+.+
T Consensus 229 ~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~-~~~~~ 307 (510)
T 3ul1_B 229 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV-TGTDE 307 (510)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT-TSCHH
T ss_pred HHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhh-cCCHH
Confidence 345788999998887765555443211 1 12221 4567777888889999999999999987 44444
Q ss_pred hHHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156 84 PVELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 84 ~l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~ 119 (176)
.....+ ...+|.|...+.+++.+|||.|.+++-.+.
T Consensus 308 ~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~ 344 (510)
T 3ul1_B 308 QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT 344 (510)
T ss_dssp HHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 443333 468888999999999999999999998775
No 58
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=93.22 E-value=0.41 Score=44.97 Aligned_cols=115 Identities=10% Similarity=0.106 Sum_probs=82.3
Q ss_pred hchHhhHHHHHHHHhc--ChhHHHHHHHHHhh------cC--h---HHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcC
Q psy6156 15 ELFLPNIMPALLQAYE--NQDSCVRKCSVFCM------VA--L---YKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNG 81 (176)
Q Consensus 15 e~~l~~iL~~LLd~~~--d~e~~VrkAav~~~------v~--p---~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~ 81 (176)
.++++.+++ ++-... |....||.++.... +. | ..+++.|...++ .+....|...+.++++. .
T Consensus 500 ~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~-~ 574 (971)
T 2x1g_F 500 KRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLN---SSMSAQATLGLKELCRD-C 574 (971)
T ss_dssp -CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHHH---SSCHHHHHHHHHHHHHH-C
T ss_pred hHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHH-H
Confidence 456666666 333333 45678888763321 11 2 235666666662 56777888888899855 4
Q ss_pred CchHHhhhchHHHHHHHhhcC--CChhHHHHHHHHHHHHHHHhcCCccccccccC
Q psy6156 82 KGPVELFLPNIMPALLQAYEN--QDSCVRKCSVFCMVALYKEFGESVLSPYINKL 134 (176)
Q Consensus 82 ~d~l~~~L~~iiP~l~~a~~~--~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L 134 (176)
.+.+.++++.++..+.+.+++ .+.+++-.+..|+..+...++.++..||+..|
T Consensus 575 ~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~l 629 (971)
T 2x1g_F 575 QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDII 629 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 567889999999999999998 57899999999999999888856688888654
No 59
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=93.18 E-value=0.34 Score=45.31 Aligned_cols=68 Identities=18% Similarity=0.298 Sum_probs=54.5
Q ss_pred CcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccC
Q psy6156 62 EHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKL 134 (176)
Q Consensus 62 ~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L 134 (176)
.......++.++.++.+-..... ..++.++|.+..++++ +.||.+|..++..++...++. +.||++.+
T Consensus 502 ~~~vr~~~~~~l~~~~~~l~~~~--~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~-l~p~~~~i 569 (963)
T 2x19_B 502 NVQLADTVMFTIGALSEWLADHP--VMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYD-LPPYAANI 569 (963)
T ss_dssp SHHHHHHHHHHHHHTHHHHHHCH--HHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGG-CTTTHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHH-HHhhHHHH
Confidence 44456678888888775443332 6799999999999987 899999999999999988877 99998754
No 60
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=92.98 E-value=0.12 Score=49.00 Aligned_cols=86 Identities=16% Similarity=0.143 Sum_probs=64.2
Q ss_pred Hhhhhhhhcc---CcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhc-----
Q psy6156 52 RILFPLIIAE---EHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFG----- 123 (176)
Q Consensus 52 ~vL~p~l~~~---~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lG----- 123 (176)
+.+.|.+++. ....+..|++.+.++.+.+.+ +.+..++|.+.++++|++.-||.+|.+++..++....
T Consensus 458 ~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~----~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~ 533 (960)
T 1wa5_C 458 KEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK----AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSP 533 (960)
T ss_dssp HHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH----HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSC
T ss_pred HHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH----HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccc
Confidence 4567777765 344566899999999877643 4689999999999999999999999999998886432
Q ss_pred -----CCccccccccCcHHHHHH
Q psy6156 124 -----ESVLSPYINKLSGAKLKL 141 (176)
Q Consensus 124 -----e~~l~P~L~~L~~~k~kL 141 (176)
.+.+.||++.+=..=.++
T Consensus 534 ~~~~~~~~l~p~l~~ll~~L~~l 556 (960)
T 1wa5_C 534 AFIFHKEDISNSTEILLKNLIAL 556 (960)
T ss_dssp CBSSCGGGTTTTHHHHHHHHHHH
T ss_pred cccccHHHhhhhHHHHHHHHHHH
Confidence 234888887554433333
No 61
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=92.80 E-value=0.82 Score=37.74 Aligned_cols=65 Identities=6% Similarity=0.202 Sum_probs=27.4
Q ss_pred CCCchhchHhhHHHHHH---HHhcChhHHHHHHHHHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHH
Q psy6156 10 GKGPVELFLPNIMPALL---QAYENQDSCVRKCSVFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKV 76 (176)
Q Consensus 10 ~~~~~e~~l~~iL~~LL---d~~~d~e~~VrkAav~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtkl 76 (176)
|...+++|+..++..+. +.+++-++..+. ++...+.+.++.....+.++..+.....|.+++++.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~gf~~~~~~a~~--~~~~~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~ 98 (240)
T 3l9t_A 31 GRGSMKQYVARLEKDFSLIEHGFKEEEQRALT--DYKSNDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL 98 (240)
T ss_dssp ---CHHHHHHHHHHHHTC-----CHHHHHHHH--HHHHSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHhhcccHHHHHHHHH--HHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHhc
Confidence 44445555555544443 233333333332 444444455555444444444444555555544443
No 62
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=92.23 E-value=1.1 Score=41.80 Aligned_cols=130 Identities=11% Similarity=0.163 Sum_probs=79.6
Q ss_pred hHHHHHhCCCchhchHhhHHHHHHHHhcC--hhHHHHHH------HHHhhcChHHHHH---hhh-hh---hh----cc-C
Q psy6156 3 TKVIEQNGKGPVELFLPNIMPALLQAYEN--QDSCVRKC------SVFCMVALYKVTR---ILF-PL---II----AE-E 62 (176)
Q Consensus 3 t~~~e~~~~~~~e~~l~~iL~~LLd~~~d--~e~~VrkA------av~~~v~p~~~l~---vL~-p~---l~----~~-~ 62 (176)
.++.+..+ +.+.||++.++..+.+.... .+.-.+.. .++...+++...+ .+. |+ ++ .. +
T Consensus 552 ~~l~~~~~-~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 630 (963)
T 2x19_B 552 KKICRECK-YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPN 630 (963)
T ss_dssp HHHHHHTG-GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSC
T ss_pred HHHHHHHH-HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34566555 44889999999998887763 12222222 1333344343222 222 22 21 11 1
Q ss_pred c---chHHHHHHHHHHHHhhcCC---------------------chHHhhhchHHHHHHHhhc--CCChhHHHHHHHHHH
Q psy6156 63 H---PINLVAIKMLTKVIEQNGK---------------------GPVELFLPNIMPALLQAYE--NQDSCVRKCSVFCMV 116 (176)
Q Consensus 63 ~---~~~~~aLkmLtklv~~~~~---------------------d~l~~~L~~iiP~l~~a~~--~~~s~VRKaaVfClV 116 (176)
. ......+.+++.+++..+. +........++|.+.+.+. ..+++|...+-.++-
T Consensus 631 ~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~ 710 (963)
T 2x19_B 631 PSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFE 710 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 1 1222467777777766542 3466678888998776653 346799999999999
Q ss_pred HHHHHhcCCccccccccC
Q psy6156 117 ALYKEFGESVLSPYINKL 134 (176)
Q Consensus 117 al~~~lGe~~l~P~L~~L 134 (176)
++...+|+. +.||++.+
T Consensus 711 ~~~~~~~~~-~~~~l~~~ 727 (963)
T 2x19_B 711 KSVKTLLDD-FAPMVPQL 727 (963)
T ss_dssp HHHHHSSST-TGGGHHHH
T ss_pred HHHHhhccc-ccccHHHH
Confidence 999999998 89998754
No 63
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=92.12 E-value=0.64 Score=39.69 Aligned_cols=102 Identities=10% Similarity=0.129 Sum_probs=68.9
Q ss_pred HhhHHHHHHHHhcChhHHHHHHHHHhh--c--C---------hHHHHHhhhhhhhcc-CcchHHHHHHHHHHHHhhcCCc
Q psy6156 18 LPNIMPALLQAYENQDSCVRKCSVFCM--V--A---------LYKVTRILFPLIIAE-EHPINLVAIKMLTKVIEQNGKG 83 (176)
Q Consensus 18 l~~iL~~LLd~~~d~e~~VrkAav~~~--v--~---------p~~~l~vL~p~l~~~-~~~~~~~aLkmLtklv~~~~~d 83 (176)
-...+|.|++...+.+..+|..++... + . -...+..|...+.++ ++.....|...|.++... .+
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~ 92 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--RE 92 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HH
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--ch
Confidence 345688888888877777776542211 1 1 113555666666655 777888888888887632 22
Q ss_pred hHHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156 84 PVELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYKE 121 (176)
Q Consensus 84 ~l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~ 121 (176)
...... ...+|.|++.+.+..++|+..|+.++..++..
T Consensus 93 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 131 (529)
T 1jdh_A 93 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 131 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 111111 36899999999999999999999999998765
No 64
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=91.82 E-value=0.81 Score=44.19 Aligned_cols=70 Identities=9% Similarity=-0.005 Sum_probs=53.8
Q ss_pred HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q psy6156 49 KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEF 122 (176)
Q Consensus 49 ~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~l 122 (176)
.++.+|....+.........+|+++..++.-++...+.+ +.+++.+.+..++ +++|.+|+.|+.++..+-
T Consensus 193 ~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~--~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~ 262 (980)
T 3ibv_A 193 FVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVN--EPCMNLLYSFLQI--EELRCAACETMTEIVNKK 262 (980)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHC--HHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhc--chHHHHHHHHcCC--hHHHHHHHHHHHHHHHcC
Confidence 355555555443444556689999999997667666654 7899999999987 899999999999998863
No 65
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=91.65 E-value=0.58 Score=44.66 Aligned_cols=114 Identities=11% Similarity=0.109 Sum_probs=79.9
Q ss_pred hHHHHHHHHhcChhHHHHHHHHHh--hc--Ch---------HHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHH
Q psy6156 20 NIMPALLQAYENQDSCVRKCSVFC--MV--AL---------YKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVE 86 (176)
Q Consensus 20 ~iL~~LLd~~~d~e~~VrkAav~~--~v--~p---------~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~ 86 (176)
-.+|.|.+...+....|+++|..+ .+ .+ ...++.|..++.+.+..+...|...|..+.. .+++...
T Consensus 623 G~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~-~s~~~~~ 701 (810)
T 3now_A 623 QGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS-VSVKCCE 701 (810)
T ss_dssp THHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH-HCHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC-CCHHHHH
Confidence 357888888887777777765221 11 11 1266777788888888888887777777773 2445555
Q ss_pred hhhc--hHHHHHHHhhcCCChhHHHHHHHHHHHHHH-------HhcCCccccccccC
Q psy6156 87 LFLP--NIMPALLQAYENQDSCVRKCSVFCMVALYK-------EFGESVLSPYINKL 134 (176)
Q Consensus 87 ~~L~--~iiP~l~~a~~~~~s~VRKaaVfClVal~~-------~lGe~~l~P~L~~L 134 (176)
..+. ..+|.|++-..+.+.++|+.|++|+..+.. .+.+.+.-|.|-.|
T Consensus 702 ~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~L 758 (810)
T 3now_A 702 KILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGL 758 (810)
T ss_dssp HHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 5554 799999999999999999999999977653 34444455555555
No 66
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=91.43 E-value=0.44 Score=43.50 Aligned_cols=105 Identities=9% Similarity=0.054 Sum_probs=75.2
Q ss_pred chHhhHHHHHHHHhcChhHHHHHHHH---HhhcChHHHHHhhhh----hh--hccCcchHHHHHHHHHHHHhhcCCchHH
Q psy6156 16 LFLPNIMPALLQAYENQDSCVRKCSV---FCMVALYKVTRILFP----LI--IAEEHPINLVAIKMLTKVIEQNGKGPVE 86 (176)
Q Consensus 16 ~~l~~iL~~LLd~~~d~e~~VrkAav---~~~v~p~~~l~vL~p----~l--~~~~~~~~~~aLkmLtklv~~~~~d~l~ 86 (176)
+.+..++..+..-+.|.++.+|-.|+ .....|+ ..+.+.| .+ .+.++-..-.|+-.+.+++ +..+|.+.
T Consensus 107 e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e-~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~-~~~p~~~~ 184 (621)
T 2vgl_A 107 ELIRLINNAIKNDLASRNPTFMGLALHCIANVGSRE-MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLY-RTSPDLVP 184 (621)
T ss_dssp HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHH-HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHH-HHCGGGCC
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH-HhChhhcC
Confidence 44566777777777888888887763 3334444 3333333 45 5566777778888899999 46666553
Q ss_pred hhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcC
Q psy6156 87 LFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGE 124 (176)
Q Consensus 87 ~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe 124 (176)
. +++++.+.+.++|.++.|.-+|+..+-+++..=++
T Consensus 185 ~--~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~ 220 (621)
T 2vgl_A 185 M--GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE 220 (621)
T ss_dssp C--CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred c--hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH
Confidence 2 58999999999999999999999988888765433
No 67
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=90.45 E-value=0.39 Score=46.41 Aligned_cols=81 Identities=12% Similarity=0.217 Sum_probs=60.7
Q ss_pred HHHhhhhhhh-----ccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHH--hhcCCChhHHHHHHHHHHHHHHHh
Q psy6156 50 VTRILFPLII-----AEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQ--AYENQDSCVRKCSVFCMVALYKEF 122 (176)
Q Consensus 50 ~l~vL~p~l~-----~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~--a~~~~~s~VRKaaVfClVal~~~l 122 (176)
.+..+..+++ .........++..+.++.+=..... +.++.+++.+.. +++|++..||.+|.+.+..+|...
T Consensus 491 l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~--~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~ 568 (980)
T 3ibv_A 491 LSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYES--AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI 568 (980)
T ss_dssp HHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC--TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc--hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh
Confidence 4555555554 2234455677888888654443332 578888999999 999999999999999999999999
Q ss_pred cCCcccccccc
Q psy6156 123 GESVLSPYINK 133 (176)
Q Consensus 123 Ge~~l~P~L~~ 133 (176)
+.. +.||++.
T Consensus 569 ~~~-L~~~~~~ 578 (980)
T 3ibv_A 569 KKQ-VVNYTES 578 (980)
T ss_dssp TTT-CSSSHHH
T ss_pred hHH-hhhHHHH
Confidence 987 9998854
No 68
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=90.10 E-value=0.77 Score=42.82 Aligned_cols=67 Identities=10% Similarity=0.144 Sum_probs=51.0
Q ss_pred HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhch--HHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156 50 VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPN--IMPALLQAYENQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 50 ~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~--iiP~l~~a~~~~~s~VRKaaVfClVal~ 119 (176)
+++.|..++.+....+...|...|..+... .+....+.+ .+|.|.+..+|.+.+||+.|..++-.+.
T Consensus 594 ~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~---~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~ 662 (780)
T 2z6g_A 594 TIPLFVQLLYSPIENIQRVAAGVLCELAQD---KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 662 (780)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHTS---HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcC---HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 567777788888777888888888887622 334444443 7899999999999999999888876654
No 69
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=90.05 E-value=1.4 Score=39.47 Aligned_cols=100 Identities=10% Similarity=0.115 Sum_probs=67.0
Q ss_pred hHHHHHHHHhcChhHHHHHHHHHh-----hcC--------hHHHHHhhhhhhhcc-CcchHHHHHHHHHHHHhhcCCchH
Q psy6156 20 NIMPALLQAYENQDSCVRKCSVFC-----MVA--------LYKVTRILFPLIIAE-EHPINLVAIKMLTKVIEQNGKGPV 85 (176)
Q Consensus 20 ~iL~~LLd~~~d~e~~VrkAav~~-----~v~--------p~~~l~vL~p~l~~~-~~~~~~~aLkmLtklv~~~~~d~l 85 (176)
-.+|.|+....+.+..+|..+... .-. -..++..|...+.++ +......|...|..+... .+..
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~ 91 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGL 91 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhH
Confidence 467777777777776677654111 111 123566677777765 455666788877776532 2222
Q ss_pred Hhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156 86 ELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYKE 121 (176)
Q Consensus 86 ~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~ 121 (176)
.... ...+|.|++.+.+..++||+.|+.++..+...
T Consensus 92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~ 128 (644)
T 2z6h_A 92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 128 (644)
T ss_dssp HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Confidence 2221 36899999999999999999999999998764
No 70
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=89.35 E-value=0.56 Score=37.77 Aligned_cols=72 Identities=13% Similarity=0.057 Sum_probs=55.4
Q ss_pred hhhhhhccCcchHHHHHHHHHHHHhhcCC----chHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156 54 LFPLIIAEEHPINLVAIKMLTKVIEQNGK----GPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES 125 (176)
Q Consensus 54 L~p~l~~~~~~~~~~aLkmLtklv~~~~~----d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~ 125 (176)
|..-+.+++|+....|+.-+.++++.... |+....+..+.+.+...+.|++..|...+..|+-++...+|..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence 34568899999999999999999976544 3444457788999999999999999999999998887666554
No 71
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=89.26 E-value=0.78 Score=41.54 Aligned_cols=99 Identities=12% Similarity=0.074 Sum_probs=72.7
Q ss_pred chHhhHHHHHHHHhcChhHHHHHHHH---HhhcChHH---HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhh
Q psy6156 16 LFLPNIMPALLQAYENQDSCVRKCSV---FCMVALYK---VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFL 89 (176)
Q Consensus 16 ~~l~~iL~~LLd~~~d~e~~VrkAav---~~~v~p~~---~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L 89 (176)
+....++..+..-..|.++.+|-.|+ ...-.++- ++..+...+++.+.-..-.|+..+.++.. ..++.+
T Consensus 103 e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~-~~p~~v---- 177 (618)
T 1w63_A 103 DVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIR-KVPELM---- 177 (618)
T ss_dssp HHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-HCGGGG----
T ss_pred HHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HChHHH----
Confidence 34556777888888888888887652 22233321 35555556778888888899999999994 566544
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156 90 PNIMPALLQAYENQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 90 ~~iiP~l~~a~~~~~s~VRKaaVfClVal~ 119 (176)
..++|.+.+..+|.++.|+-+|+..+-.++
T Consensus 178 ~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~ 207 (618)
T 1w63_A 178 EMFLPATKNLLNEKNHGVLHTSVVLLTEMC 207 (618)
T ss_dssp GGGGGGTTTSTTCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCHhHHHHHHHHHHHHH
Confidence 477888888999999999999998888765
No 72
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=89.07 E-value=2.5 Score=30.71 Aligned_cols=66 Identities=14% Similarity=0.138 Sum_probs=51.3
Q ss_pred chHhhHHHHHHHHhcChhHHHHHHHHHhhcCh---HHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcC
Q psy6156 16 LFLPNIMPALLQAYENQDSCVRKCSVFCMVAL---YKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNG 81 (176)
Q Consensus 16 ~~l~~iL~~LLd~~~d~e~~VrkAav~~~v~p---~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~ 81 (176)
.+++..+...|+...+..+.+..++.+++-.. ..+..++...+.....+.++..|=++..++....
T Consensus 4 ~~~e~~l~~~L~~L~~s~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~ 72 (132)
T 4flb_A 4 GALESSLDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCK 72 (132)
T ss_dssp HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhc
Confidence 45677788888888888899999887766433 3477888888888888888999988888886543
No 73
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=88.69 E-value=1.8 Score=42.04 Aligned_cols=130 Identities=15% Similarity=0.134 Sum_probs=83.3
Q ss_pred chHhhHHHHHHHHhcChhHHHHHHH------HHhh-----c-------ChH--HHHHhhhhhhhccCcchHHHHHHHHHH
Q psy6156 16 LFLPNIMPALLQAYENQDSCVRKCS------VFCM-----V-------ALY--KVTRILFPLIIAEEHPINLVAIKMLTK 75 (176)
Q Consensus 16 ~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~-----v-------~p~--~~l~vL~p~l~~~~~~~~~~aLkmLtk 75 (176)
.+|.+++.+|++.+.|..+-|..+| +... + .|+ .++..+...+..-+......+...+..
T Consensus 536 ~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~ 615 (1023)
T 4hat_C 536 NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGI 615 (1023)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5799999999999976654444443 1110 1 122 244444555554456666789999999
Q ss_pred HHhhcCCch-HHhhhchHHHHHHHhhcCCC------------hhHHHH---HHHHHHHHHHHhcCCccccccccCcHHHH
Q psy6156 76 VIEQNGKGP-VELFLPNIMPALLQAYENQD------------SCVRKC---SVFCMVALYKEFGESVLSPYINKLSGAKL 139 (176)
Q Consensus 76 lv~~~~~d~-l~~~L~~iiP~l~~a~~~~~------------s~VRKa---aVfClVal~~~lGe~~l~P~L~~L~~~k~ 139 (176)
+++..+.++ ....+..++|.+.+.++.-. ++..|. ...|++.++..+|.. +.|++...-+.=+
T Consensus 616 vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~-f~~~~~~i~~~~l 694 (1023)
T 4hat_C 616 IISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGAD-FYPQLGHIYYNML 694 (1023)
T ss_dssp HHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHH
T ss_pred HHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHH-HHHHHHHHHHHHH
Confidence 998888666 56677888887776664422 122332 356889999999998 7777765544444
Q ss_pred HHHHHHH
Q psy6156 140 KLLQLYI 146 (176)
Q Consensus 140 kLl~iYi 146 (176)
++.+.|-
T Consensus 695 ~~y~~~s 701 (1023)
T 4hat_C 695 QLYRAVS 701 (1023)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444553
No 74
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.27 E-value=1.4 Score=43.04 Aligned_cols=118 Identities=16% Similarity=0.195 Sum_probs=75.7
Q ss_pred HHHHHHHh-cChhHHHHHHHHHh-----hcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHH
Q psy6156 22 MPALLQAY-ENQDSCVRKCSVFC-----MVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPA 95 (176)
Q Consensus 22 L~~LLd~~-~d~e~~VrkAav~~-----~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~ 95 (176)
+.+||+.. .|.++-||++|+.. +=.++.+.+++.-+.++.++-++-+|.-.|.-+.-..+ .++++..
T Consensus 579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~-------~~~aid~ 651 (963)
T 4ady_A 579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG-------LQSAIDV 651 (963)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC-------CHHHHHH
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC-------cHHHHHH
Confidence 44566554 36667788887433 22556677777667777888888888877777652222 2456667
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHHhhhc
Q psy6156 96 LLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQ 150 (176)
Q Consensus 96 l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi~R~~ 150 (176)
|....+|+...||.+|++.|=- ...-.++...|.+. +-.+.|...|-+|.+
T Consensus 652 L~~L~~D~d~~Vrq~Ai~ALG~-Ig~gtnna~~~rva---~~l~~L~~~~~dk~~ 702 (963)
T 4ady_A 652 LDPLTKDPVDFVRQAAMIALSM-ILIQQTEKLNPQVA---DINKNFLSVITNKHQ 702 (963)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHH-HSTTCCTTTCTTHH---HHHHHHHHHHHCSSS
T ss_pred HHHHccCCCHHHHHHHHHHHHH-HhcCCccccchHHH---HHHHHHHHHHhcccc
Confidence 7777899999999999998752 22222333555543 334456677766554
No 75
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=87.01 E-value=4 Score=36.51 Aligned_cols=100 Identities=11% Similarity=0.170 Sum_probs=69.0
Q ss_pred hHHHHHHHHhcCh-hHHHHHHH--HHhhc--ChH--------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHH
Q psy6156 20 NIMPALLQAYENQ-DSCVRKCS--VFCMV--ALY--------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVE 86 (176)
Q Consensus 20 ~iL~~LLd~~~d~-e~~VrkAa--v~~~v--~p~--------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~ 86 (176)
.+++.|++...+. +.-+++++ .+..+ .++ ..++.|...+++.+......|+..|..+.... .+...
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~ 134 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKM 134 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHH
Confidence 5678888887653 33344433 11111 111 26777888888888888889999999998543 33333
Q ss_pred hhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156 87 LFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 87 ~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~ 120 (176)
... ...+|.|++.+.+.++.++.++..|+-.+..
T Consensus 135 ~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 135 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 169 (644)
T ss_dssp HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh
Confidence 333 6889999999999999999999888877664
No 76
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=86.86 E-value=1.2 Score=42.67 Aligned_cols=122 Identities=12% Similarity=0.096 Sum_probs=81.9
Q ss_pred chHhhHHHHHHHHhc-----ChhHHHHHHHH--Hhh------cChHH---HHHhhhhhhhccCcchHHHHHHHHHHHHhh
Q psy6156 16 LFLPNIMPALLQAYE-----NQDSCVRKCSV--FCM------VALYK---VTRILFPLIIAEEHPINLVAIKMLTKVIEQ 79 (176)
Q Consensus 16 ~~l~~iL~~LLd~~~-----d~e~~VrkAav--~~~------v~p~~---~l~vL~p~l~~~~~~~~~~aLkmLtklv~~ 79 (176)
+++..+++.++.... |....|+..+. +.. -.|.. +++.|...+.+...+....|...+.++++.
T Consensus 491 ~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 491 RFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 356677777766432 34455553221 111 13332 555555566666778888899999999976
Q ss_pred cCCchH-------HhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcC-CccccccccCcHH
Q psy6156 80 NGKGPV-------ELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGE-SVLSPYINKLSGA 137 (176)
Q Consensus 80 ~~~d~l-------~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe-~~l~P~L~~L~~~ 137 (176)
....-+ .+++++++..+...++..+.+-.-....|+..+....|+ +...||+..|-+-
T Consensus 571 ~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~ 636 (1049)
T 3m1i_C 571 CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQL 636 (1049)
T ss_dssp HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHH
T ss_pred HHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 543322 378899999999999988888888888899988888885 4578888765443
No 77
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=86.71 E-value=3.7 Score=34.84 Aligned_cols=69 Identities=10% Similarity=0.108 Sum_probs=52.7
Q ss_pred HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156 50 VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 50 ~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~ 119 (176)
.++.|...+++.+......|+..|..+... +.+.-.... ...+|.+++.+.+.+.++|..+..|+-.+.
T Consensus 102 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 102 GIPALVKMLGSPVDSVLFYAITTLHNLLLH-QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-CTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 666777788888877888899999999844 222222222 578999999999999999999988887554
No 78
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=84.49 E-value=1 Score=44.19 Aligned_cols=78 Identities=14% Similarity=0.227 Sum_probs=53.5
Q ss_pred CcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcC------------CChhHHHHHHHHHHHHHHHhcCCcccc
Q psy6156 62 EHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYEN------------QDSCVRKCSVFCMVALYKEFGESVLSP 129 (176)
Q Consensus 62 ~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~------------~~s~VRKaaVfClVal~~~lGe~~l~P 129 (176)
+......++.++.++.+-.... .+.|+.++..+..++.+ ...+||.+|-.|+..+|...++. +.|
T Consensus 545 ~p~l~~~~i~~l~~l~~~~~~~--p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~-L~p 621 (1204)
T 3a6p_A 545 DPLILSCVLTNVSALFPFVTYR--PEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQL-VLP 621 (1204)
T ss_dssp CHHHHHHHHHHHHHHGGGGGTC--GGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHH-HGG
T ss_pred ChHHHHHHHHHHHHHHHHHhcC--chHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHH-HHH
Confidence 4445557888877765433321 23556666666666655 34589999999999999999998 999
Q ss_pred ccccCcHHHHHHH
Q psy6156 130 YINKLSGAKLKLL 142 (176)
Q Consensus 130 ~L~~L~~~k~kLl 142 (176)
|++.|-..-..++
T Consensus 622 ~~~~i~~~~~~~l 634 (1204)
T 3a6p_A 622 NFDMLYNHVKQLL 634 (1204)
T ss_dssp GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9986555444333
No 79
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=84.12 E-value=2.6 Score=40.99 Aligned_cols=124 Identities=12% Similarity=0.112 Sum_probs=83.4
Q ss_pred hhchHhhHHHHHHHHhc-----ChhHHHHHHHH--------HhhcChHH---HHHhhhhhhhccCcchHHHHHHHHHHHH
Q psy6156 14 VELFLPNIMPALLQAYE-----NQDSCVRKCSV--------FCMVALYK---VTRILFPLIIAEEHPINLVAIKMLTKVI 77 (176)
Q Consensus 14 ~e~~l~~iL~~LLd~~~-----d~e~~VrkAav--------~~~v~p~~---~l~vL~p~l~~~~~~~~~~aLkmLtklv 77 (176)
..+++..+++.|++... |....||..+. +..-+|+. ++..|...+.+.....-..|...+.+++
T Consensus 489 e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~ 568 (1023)
T 4hat_C 489 EKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIV 568 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 45788889999998876 35566776541 11234443 4444444554444446667888888888
Q ss_pred hhcCCc-------hHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCc-cccccccCcHH
Q psy6156 78 EQNGKG-------PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESV-LSPYINKLSGA 137 (176)
Q Consensus 78 ~~~~~d-------~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~-l~P~L~~L~~~ 137 (176)
+..... +..+++++++..+.++.++-+++-+-.+..++-.+-..+|++. ...+++.|-+-
T Consensus 569 ~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~ 636 (1023)
T 4hat_C 569 QKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQL 636 (1023)
T ss_dssp HHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHH
T ss_pred HHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHh
Confidence 765543 2346888899889999888888888888888888888888664 34455554443
No 80
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=84.02 E-value=2.6 Score=33.57 Aligned_cols=118 Identities=19% Similarity=0.333 Sum_probs=74.6
Q ss_pred hhchHhhHHHHHHHHhcChhHHHHHHHHHh---hcChHHHHHhhhhhhhc------cCcchHHHHHHHHHHHHhhcCCch
Q psy6156 14 VELFLPNIMPALLQAYENQDSCVRKCSVFC---MVALYKVTRILFPLIIA------EEHPINLVAIKMLTKVIEQNGKGP 84 (176)
Q Consensus 14 ~e~~l~~iL~~LLd~~~d~e~~VrkAav~~---~v~p~~~l~vL~p~l~~------~~~~~~~~aLkmLtklv~~~~~d~ 84 (176)
.+.||+.+...++. ..|++|+.. --..++.++.+..++.+ .++......++|...++ ..+.=.
T Consensus 9 lq~yf~~It~a~~~-------~~r~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl-~N~~l~ 80 (196)
T 4atg_A 9 LQLYFDKILSMIKS-------DMKDIAIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLI-KNKHVF 80 (196)
T ss_dssp HHHHHHHHHHHHTS-------TTHHHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HCTTCC
T ss_pred HHHHHHHHHHHHHh-------HHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH-cCCCCC
Confidence 55666666655554 246655332 12334455555544422 25666667788888888 555557
Q ss_pred HHhhhchHHHHHHHhhcCC---ChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHHh
Q psy6156 85 VELFLPNIMPALLQAYENQ---DSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIK 147 (176)
Q Consensus 85 l~~~L~~iiP~l~~a~~~~---~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi~ 147 (176)
++..+-.++|.+..+.=.. ...+|.-|-..+..+|...|+. | +.-|.|+.+.|.+
T Consensus 81 lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~----y----~~L~~RI~~tl~k 138 (196)
T 4atg_A 81 IDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRS----Y----KTLAPRVLKTLKG 138 (196)
T ss_dssp CGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTT----S----TTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCcc----C----chHHHHHHHHHHH
Confidence 7788888888777665211 1179999999999999999985 1 3334566666655
No 81
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=83.81 E-value=5.5 Score=32.73 Aligned_cols=106 Identities=13% Similarity=0.113 Sum_probs=68.8
Q ss_pred HHHHHHH-HHhhcChH---HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHH
Q psy6156 34 SCVRKCS-VFCMVALY---KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRK 109 (176)
Q Consensus 34 ~~VrkAa-v~~~v~p~---~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRK 109 (176)
+.+++|- ++..-.|. .+++-+.++..+...+...-....+.+.+..- ...++..++.|..-++|.++.|-|
T Consensus 34 ~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k-----~~l~~~~l~~L~~Ll~d~d~~V~K 108 (257)
T 3gs3_A 34 ELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK-----VELLPHVINVVSMLLRDNSAQVIK 108 (257)
T ss_dssp HHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCCHHHHH
Confidence 4444443 33333454 46777777655555556666777777777331 247889999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC-----c----cccccccCcHHHHHHHHH
Q psy6156 110 CSVFCMVALYKEFGES-----V----LSPYINKLSGAKLKLLQL 144 (176)
Q Consensus 110 aaVfClVal~~~lGe~-----~----l~P~L~~L~~~k~kLl~i 144 (176)
.++.|+..+|..+=+. . ...--..++.-|-+.++.
T Consensus 109 ~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~ 152 (257)
T 3gs3_A 109 RVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDM 152 (257)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 9999999999765332 1 122234555556555555
No 82
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=83.57 E-value=1.2 Score=41.97 Aligned_cols=88 Identities=11% Similarity=0.103 Sum_probs=60.6
Q ss_pred HHHHhcCh-----hHHHHHHH-----HHhhcChH-HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHH
Q psy6156 25 LLQAYENQ-----DSCVRKCS-----VFCMVALY-KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIM 93 (176)
Q Consensus 25 LLd~~~d~-----e~~VrkAa-----v~~~v~p~-~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~ii 93 (176)
.+|.++|- -..||+++ .+..++++ .++..|...+....|+..++++-.|.-+ .|-+.. ++.++
T Consensus 228 ALDRFGDYVSDqVVAPVRETaAQtLGaL~hLp~e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~-Ld~Vv 301 (800)
T 3oc3_A 228 VTDKFNDFVDDRTVAPVRDAAAYLLSRIYPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVED-KDGLC 301 (800)
T ss_dssp HHBCCBBCSSSSCBCHHHHHHHHHHHHHTTTSCSCCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCC-HHHHH
T ss_pred HhccccccccCeeeeehHHHHHHHHHHHHhCChhHHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHH-HHHHH
Confidence 35667662 26788863 12445444 2444444444777899999887777655 333322 89999
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHH
Q psy6156 94 PALLQAYENQDSCVRKCSVFCMVAL 118 (176)
Q Consensus 94 P~l~~a~~~~~s~VRKaaVfClVal 118 (176)
|.+..+..|..-+||-.|--+++-+
T Consensus 302 ~aVL~GL~D~DDDVRAVAAetLiPI 326 (800)
T 3oc3_A 302 RKLVSLLSSPDEDIKLLSAELLCHF 326 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHTTS
T ss_pred HHHHhhcCCcccHHHHHHHHHhhhh
Confidence 9999999999999999998887644
No 83
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=83.23 E-value=5.1 Score=39.30 Aligned_cols=126 Identities=13% Similarity=0.128 Sum_probs=81.6
Q ss_pred chHhhHHHHHHHHhcChhHHHHHHHHHhh-----------cC-------h--HHHHHhhhhhhhccCcchHHHHHHHHHH
Q psy6156 16 LFLPNIMPALLQAYENQDSCVRKCSVFCM-----------VA-------L--YKVTRILFPLIIAEEHPINLVAIKMLTK 75 (176)
Q Consensus 16 ~~l~~iL~~LLd~~~d~e~~VrkAav~~~-----------v~-------p--~~~l~vL~p~l~~~~~~~~~~aLkmLtk 75 (176)
.||+.++.+|++.+.+..+-|.+||.-+. +. | +.+++.+..+...-+......-.+.+..
T Consensus 562 ~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~ 641 (1073)
T 3gjx_A 562 KFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGY 641 (1073)
T ss_dssp HHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 58999999999999988777777651111 11 1 1233333333333344455567888889
Q ss_pred HHhhcCCch-HHhhhchHHHHHHHhhcCCC------------hh-HHH--HHHHHHHHHHHHhcCCccccccccCcHHHH
Q psy6156 76 VIEQNGKGP-VELFLPNIMPALLQAYENQD------------SC-VRK--CSVFCMVALYKEFGESVLSPYINKLSGAKL 139 (176)
Q Consensus 76 lv~~~~~d~-l~~~L~~iiP~l~~a~~~~~------------s~-VRK--aaVfClVal~~~lGe~~l~P~L~~L~~~k~ 139 (176)
++...+.+. ....+..+||...+.++.-. ++ ++. ....|.+++|..+|.. +.|++...-+
T Consensus 642 vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~-f~~~~~~i~~--- 717 (1073)
T 3gjx_A 642 MIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHP-FVIQLGRIYL--- 717 (1073)
T ss_dssp HHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHH---
T ss_pred HHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchh-HHHHHHHHHH---
Confidence 998888766 46677888888777665422 22 222 2345889999999998 7777766544
Q ss_pred HHHHHH
Q psy6156 140 KLLQLY 145 (176)
Q Consensus 140 kLl~iY 145 (176)
.++++|
T Consensus 718 ~~l~~y 723 (1073)
T 3gjx_A 718 DMLNVY 723 (1073)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 456666
No 84
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=83.18 E-value=4.2 Score=34.50 Aligned_cols=101 Identities=9% Similarity=0.043 Sum_probs=70.2
Q ss_pred hHHHHHHHHhcChh-----HHHHHHH--H--Hhh---cChHH--------HHHhhhhhhhccCcchHHHHHHHHHHHHhh
Q psy6156 20 NIMPALLQAYENQD-----SCVRKCS--V--FCM---VALYK--------VTRILFPLIIAEEHPINLVAIKMLTKVIEQ 79 (176)
Q Consensus 20 ~iL~~LLd~~~d~e-----~~VrkAa--v--~~~---v~p~~--------~l~vL~p~l~~~~~~~~~~aLkmLtklv~~ 79 (176)
-.+|.|++...+.. ++++.|+ + ++. ..++. .++.|..++.+++......|...|..+. .
T Consensus 214 Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa-~ 292 (354)
T 3nmw_A 214 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS-A 292 (354)
T ss_dssp THHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT-S
T ss_pred CcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHh-C
Confidence 46777777776432 3455553 1 111 23432 5667777788888888888999999887 3
Q ss_pred cCCchHHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156 80 NGKGPVELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYKE 121 (176)
Q Consensus 80 ~~~d~l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~ 121 (176)
.+++...... ...+|.|++-+++.+..+|+.|...+-.+..-
T Consensus 293 ~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 293 RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp SCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 3455544444 36799999999999999999999888877654
No 85
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=83.10 E-value=3.7 Score=35.43 Aligned_cols=69 Identities=4% Similarity=0.036 Sum_probs=52.7
Q ss_pred HHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHh-hhchHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156 51 TRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVEL-FLPNIMPALLQAYENQDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 51 l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~-~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~ 120 (176)
++.|...++++++.....|...|.++.. .+.+.-.. .-...+|.|++.+.+.+++++..|+.++-.|..
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~-~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~ 73 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCF-QDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVF 73 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTS-SCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHc-CChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 4566677788888888889999999873 23221112 235789999999999999999999999988764
No 86
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=82.30 E-value=3.6 Score=40.37 Aligned_cols=45 Identities=13% Similarity=0.325 Sum_probs=36.9
Q ss_pred hhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC-------ccccccc
Q psy6156 88 FLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES-------VLSPYIN 132 (176)
Q Consensus 88 ~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~-------~l~P~L~ 132 (176)
.|+.++..+.+.|+++++.|..+|..|+-.+|...++. +..||+.
T Consensus 563 ~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~ 614 (1073)
T 3gjx_A 563 FLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFID 614 (1073)
T ss_dssp HHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHH
Confidence 46667777888899999999999999999999998875 2356764
No 87
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=81.93 E-value=7.3 Score=33.56 Aligned_cols=105 Identities=8% Similarity=0.113 Sum_probs=68.1
Q ss_pred hHHHHHHHHhcChhHHHHHHHHHhh----cChH-------HHHHhhhhhhhccCc------chHHHHHHHHHHHHhhcCC
Q psy6156 20 NIMPALLQAYENQDSCVRKCSVFCM----VALY-------KVTRILFPLIIAEEH------PINLVAIKMLTKVIEQNGK 82 (176)
Q Consensus 20 ~iL~~LLd~~~d~e~~VrkAav~~~----v~p~-------~~l~vL~p~l~~~~~------~~~~~aLkmLtklv~~~~~ 82 (176)
..+|.|++...+.+.-|++.|.+.. -.++ .+++.|...+..++. .+...++..+..++ ..+.
T Consensus 331 ~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~-~~~~ 409 (457)
T 1xm9_A 331 KGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLM-ASQP 409 (457)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHH-TTCT
T ss_pred CCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHH-hcCH
Confidence 5788999999887655555432111 1111 255666666766543 24557888888888 4455
Q ss_pred chHHhhhc-hHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHhcCCccc
Q psy6156 83 GPVELFLP-NIMPALLQAYENQ-DSCVRKCSVFCMVALYKEFGESVLS 128 (176)
Q Consensus 83 d~l~~~L~-~iiP~l~~a~~~~-~s~VRKaaVfClVal~~~lGe~~l~ 128 (176)
+....... ..+|.|++-..+. +..++|.|...+ +...+..+++
T Consensus 410 ~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L---~~~~~~~~l~ 454 (457)
T 1xm9_A 410 QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLL---SDMWSSKELQ 454 (457)
T ss_dssp HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHH---HTTSSSTTCS
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHH---HHHHcchhhh
Confidence 54444443 7899999999999 999999887765 3444555454
No 88
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=80.80 E-value=12 Score=27.83 Aligned_cols=127 Identities=13% Similarity=0.108 Sum_probs=79.0
Q ss_pred hhHHHHHHHHhcChhHHHHHHHHHhhcC---hHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHH
Q psy6156 19 PNIMPALLQAYENQDSCVRKCSVFCMVA---LYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPA 95 (176)
Q Consensus 19 ~~iL~~LLd~~~d~e~~VrkAav~~~v~---p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~ 95 (176)
+....+|-+...+.+..+...+.++.-+ ...+..++...+.......++++|=++..+++..+.+-....-+.+.+.
T Consensus 10 ~~f~~~L~~L~~nSk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~ 89 (144)
T 1sz9_A 10 KDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNL 89 (144)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHH
T ss_pred HHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 3333333343336677777776665433 2348888888898888889999999999999888776555455666667
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHHhhhc
Q psy6156 96 LLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQ 150 (176)
Q Consensus 96 l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi~R~~ 150 (176)
+..+|.....++|+.... ++.++..-.... .+-.++..++=++-+++.++
T Consensus 90 f~~~~~~~d~~~r~k~~r-L~~~W~~~~~~~----~~vF~~~~l~~i~~~l~~a~ 139 (144)
T 1sz9_A 90 YKRTYLLVDNTTRTKLIN-MFKLWLNPNDTG----LPLFEGSALEKIEQFLIKAS 139 (144)
T ss_dssp HHHHHHTSCHHHHHHHHH-HHHHHTSGGGCS----SCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHH-HHHHHhCcccCC----CCCCCHHHHHHHHHHHHhhh
Confidence 778888777777765444 333442110000 22345555555555555554
No 89
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=78.93 E-value=3 Score=35.86 Aligned_cols=105 Identities=13% Similarity=0.078 Sum_probs=55.9
Q ss_pred chHhhHHHHHHHHhcChhHHHHHHHHHhh-----cChHHHH---HhhhhhhhccCcchHHHHHHHHHHHHh---------
Q psy6156 16 LFLPNIMPALLQAYENQDSCVRKCSVFCM-----VALYKVT---RILFPLIIAEEHPINLVAIKMLTKVIE--------- 78 (176)
Q Consensus 16 ~~l~~iL~~LLd~~~d~e~~VrkAav~~~-----v~p~~~l---~vL~p~l~~~~~~~~~~aLkmLtklv~--------- 78 (176)
..++.+.+.+-++..|+...||++|+++. .+|+.+- ..+...+++.+.-.-..|+.++..+.+
T Consensus 135 ~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kL 214 (355)
T 3tjz_B 135 TMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKM 214 (355)
T ss_dssp TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHHHHHH
Confidence 46778888899999999999999986654 3555432 223333444332222233333333321
Q ss_pred --hcCC----chHH-----------------hhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156 79 --QNGK----GPVE-----------------LFLPNIMPALLQAYENQDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 79 --~~~~----d~l~-----------------~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~ 120 (176)
.++. ++.. ..-..+++.+.....|.++.|-=.|+.+++.+..
T Consensus 215 v~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~ 279 (355)
T 3tjz_B 215 ISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG 279 (355)
T ss_dssp HHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC---
T ss_pred HHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Confidence 1111 1111 1224566677777889999999999999998766
No 90
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=78.40 E-value=14 Score=30.83 Aligned_cols=104 Identities=12% Similarity=0.134 Sum_probs=67.6
Q ss_pred hchHhhHHHHHHHHhcChhHHHHHHH--HHh---hcCh-HHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhh
Q psy6156 15 ELFLPNIMPALLQAYENQDSCVRKCS--VFC---MVAL-YKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELF 88 (176)
Q Consensus 15 e~~l~~iL~~LLd~~~d~e~~VrkAa--v~~---~v~p-~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~ 88 (176)
...|.-+.-.+.+..+.+.++++.-+ .+. ...+ ..+...+..++.+.+.+.+.++|+.++.+..+ +.|. ++
T Consensus 110 ~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~-S~D~--~i 186 (265)
T 3b2a_A 110 SKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNS-SADS--GH 186 (265)
T ss_dssp HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGG-CSSC--CC
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcc-cCCH--HH
Confidence 44555555555555555555555422 222 2333 35889999999888899999999999999844 3332 14
Q ss_pred hchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcC
Q psy6156 89 LPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGE 124 (176)
Q Consensus 89 L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe 124 (176)
+.+++-++..-.++..+.+++=|... +-..++-
T Consensus 187 ~~~I~~eI~elL~~eD~~l~e~aLd~---Le~ils~ 219 (265)
T 3b2a_A 187 LTLILDEIPSLLQNDNEFIVELALDV---LEKALSF 219 (265)
T ss_dssp GGGTTTTHHHHHTCSCHHHHHHHHHH---HHHHTTS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHH---HHHHHcC
Confidence 55666666777888999999955444 4444444
No 91
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=77.09 E-value=10 Score=36.08 Aligned_cols=98 Identities=12% Similarity=0.105 Sum_probs=61.0
Q ss_pred HHHHHHHHhcChhHHHHH-HH-----HHhhcChHH---------HHHhhhhhhhccCc-chHHHHHHHHHHHHhhcCCch
Q psy6156 21 IMPALLQAYENQDSCVRK-CS-----VFCMVALYK---------VTRILFPLIIAEEH-PINLVAIKMLTKVIEQNGKGP 84 (176)
Q Consensus 21 iL~~LLd~~~d~e~~Vrk-Aa-----v~~~v~p~~---------~l~vL~p~l~~~~~-~~~~~aLkmLtklv~~~~~d~ 84 (176)
.+|.|++...+....+++ |+ +....+|.. +++.|..++.++.. -....|+..|+.+. ..+.+.
T Consensus 537 aip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa-~~~d~~ 615 (810)
T 3now_A 537 GVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLA-SMNESV 615 (810)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHT-TSCHHH
T ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHh-cCCHHH
Confidence 678888887765444444 32 222234543 34455555654322 22346888888888 333332
Q ss_pred HHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156 85 VELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 85 l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~ 119 (176)
-...+ ...+|.|++.+.|.+..||++|..|+-.|.
T Consensus 616 ~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa 651 (810)
T 3now_A 616 RQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLV 651 (810)
T ss_dssp HHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 22233 357899999999999999999999987664
No 92
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=77.00 E-value=25 Score=28.76 Aligned_cols=92 Identities=12% Similarity=0.097 Sum_probs=61.3
Q ss_pred HhhHHHHHHHHhcChhHHHHHHHHHhh--cC-hHHHHHhhhh-hhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHH
Q psy6156 18 LPNIMPALLQAYENQDSCVRKCSVFCM--VA-LYKVTRILFP-LIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIM 93 (176)
Q Consensus 18 l~~iL~~LLd~~~d~e~~VrkAav~~~--v~-p~~~l~vL~p-~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~ii 93 (176)
.+.+++-..+.+.|....||=.|++.. .. ....+..+.+ +..++.|.+...+-+.+.+++...++|. .+
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~~~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-------~l 141 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYLSKDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-------AL 141 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-------TH
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhccCcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-------HH
Confidence 345556666667777788887664321 12 2357777776 4456678777777777777775455553 55
Q ss_pred HHHHHhhcCCChhHHHHHHHHHH
Q psy6156 94 PALLQAYENQDSCVRKCSVFCMV 116 (176)
Q Consensus 94 P~l~~a~~~~~s~VRKaaVfClV 116 (176)
|.+.+=..|.+..||.+|..+.-
T Consensus 142 ~~~~~W~~d~n~~VRR~Ase~~r 164 (240)
T 3l9t_A 142 PIIDEWLKSSNLHTRRAATEGLR 164 (240)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHTC
T ss_pred HHHHHHhcCCCHHHHHHHHHhhH
Confidence 67777778888999988887754
No 93
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=76.99 E-value=43 Score=30.35 Aligned_cols=34 Identities=9% Similarity=0.193 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCcchhhHhhHhhh
Q psy6156 136 GAKLKLLQLYIKRSQTHSSSVPTSLSIRSLERVCSV 171 (176)
Q Consensus 136 ~~k~kLl~iYi~R~~~~~~~~~~~~~~~~~~~~~~~ 171 (176)
++++.|+++..+-+.-. .+=.++|...++|.-+-
T Consensus 211 ~g~qeLv~ii~eQa~L~--~~f~~sD~e~vdRlI~C 244 (507)
T 3u0r_A 211 SGRQQLVELVAEQADLE--QTFNPSDPDCVDRLLQC 244 (507)
T ss_dssp HHHHHHHHHHHHHHTTT--SCCCSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcc--CCCCCcCHHHHHHHHHH
Confidence 67899999999887544 23345777899987553
No 94
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=76.12 E-value=15 Score=32.33 Aligned_cols=100 Identities=9% Similarity=0.046 Sum_probs=68.5
Q ss_pred hHHHHHHHHhcChh-----HHHHHHH--H--Hhh---cChHH--------HHHhhhhhhhccCcchHHHHHHHHHHHHhh
Q psy6156 20 NIMPALLQAYENQD-----SCVRKCS--V--FCM---VALYK--------VTRILFPLIIAEEHPINLVAIKMLTKVIEQ 79 (176)
Q Consensus 20 ~iL~~LLd~~~d~e-----~~VrkAa--v--~~~---v~p~~--------~l~vL~p~l~~~~~~~~~~aLkmLtklv~~ 79 (176)
-.+|.|++...+.. +++..|+ + ++. -.++. .++.|..++.+++......|...|..+. .
T Consensus 330 Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa-~ 408 (458)
T 3nmz_A 330 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS-A 408 (458)
T ss_dssp THHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHH-S
T ss_pred CcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHH-c
Confidence 46777777766432 2455553 1 111 23432 4566777788888888888999999987 3
Q ss_pred cCCchHHhhhc-hHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156 80 NGKGPVELFLP-NIMPALLQAYENQDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 80 ~~~d~l~~~L~-~iiP~l~~a~~~~~s~VRKaaVfClVal~~ 120 (176)
.+++....... ..+|.|++.+++.+..+|+.|...+-.|..
T Consensus 409 ~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 409 RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp SCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 35555554443 679999999999999999998888877654
No 95
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=75.09 E-value=7.3 Score=31.31 Aligned_cols=70 Identities=13% Similarity=0.000 Sum_probs=46.6
Q ss_pred HHHhhhhhhhccCc--chHHHHHHHHHHHHhhcCCchHHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156 50 VTRILFPLIIAEEH--PINLVAIKMLTKVIEQNGKGPVELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 50 ~l~vL~p~l~~~~~--~~~~~aLkmLtklv~~~~~d~l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~ 120 (176)
.++.|...+++++. .....|...+..+..+. .+.-..+. ...+|.|++-+.+.+.+|+..|+.++-.+..
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF 81 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 45566667777766 55556666777766332 22111121 2457999999999999999999998887753
No 96
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=72.88 E-value=5.8 Score=36.33 Aligned_cols=67 Identities=9% Similarity=0.011 Sum_probs=49.3
Q ss_pred hhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhc
Q psy6156 57 LIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFG 123 (176)
Q Consensus 57 ~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lG 123 (176)
.+++.+...+.+|+..++.+++.-....+...-+-+.|.+.....|++.+||-+|.-++=.|+..-|
T Consensus 42 ~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 42 DLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp HHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred HcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 3678888999999999999995322233333334555667788999999999999999966655433
No 97
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=70.33 E-value=17 Score=31.64 Aligned_cols=82 Identities=11% Similarity=0.171 Sum_probs=54.5
Q ss_pred HHHHHHH-HHhhcChHH---HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHH
Q psy6156 34 SCVRKCS-VFCMVALYK---VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRK 109 (176)
Q Consensus 34 ~~VrkAa-v~~~v~p~~---~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRK 109 (176)
+.++++- ++..-.|.. +++-+..+..+......--.+..+.+.+.. . .+.++.+++.|..-++|.++.|-|
T Consensus 44 ~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~----~el~~~~l~~L~~LL~d~d~~V~K 118 (386)
T 3o2t_A 44 TVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-D----IELLLKLIANLNMLLRDENVNVVK 118 (386)
T ss_dssp HHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-C----GGGHHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHcCCCHHHHH
Confidence 4444443 222335542 444444444444555566677777777742 1 334688999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy6156 110 CSVFCMVALYK 120 (176)
Q Consensus 110 aaVfClVal~~ 120 (176)
.++.|+..+|-
T Consensus 119 ~~I~~~tslYp 129 (386)
T 3o2t_A 119 KAILTMTQLYK 129 (386)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999993
No 98
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=69.17 E-value=26 Score=27.98 Aligned_cols=68 Identities=16% Similarity=0.100 Sum_probs=48.1
Q ss_pred HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhh-chHHHHHHHhhc-CCChhHHHHHHHHHHHH
Q psy6156 50 VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFL-PNIMPALLQAYE-NQDSCVRKCSVFCMVAL 118 (176)
Q Consensus 50 ~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L-~~iiP~l~~a~~-~~~s~VRKaaVfClVal 118 (176)
.++.|...+.+++......|...|..+.. .+.+.-..+. ..-+|.|++.+. +.+.++++.|+-++-.+
T Consensus 53 ~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~-~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nL 122 (233)
T 3tt9_A 53 GILKLLQLLKVQNEDVQRAVCGALRNLVF-EDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL 122 (233)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 56677777888777777788888888873 2333222222 468999999997 57899999988666555
No 99
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=69.06 E-value=27 Score=26.45 Aligned_cols=81 Identities=12% Similarity=0.060 Sum_probs=55.1
Q ss_pred cChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhh-chHHHHHHHhhc-CCChhHHHHHHHHHHHHHHHh
Q psy6156 45 VALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFL-PNIMPALLQAYE-NQDSCVRKCSVFCMVALYKEF 122 (176)
Q Consensus 45 v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L-~~iiP~l~~a~~-~~~s~VRKaaVfClVal~~~l 122 (176)
..|..+++.|.--|+..+...-+.||.+|..+++..+..--..+. .+++..+.+-.. .+.+.||+-+...+-+....+
T Consensus 48 ~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f 127 (163)
T 1x5b_A 48 NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 127 (163)
T ss_dssp SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 356678888888888887777788999999999777753221221 134333333333 366899998888777777777
Q ss_pred cCC
Q psy6156 123 GES 125 (176)
Q Consensus 123 Ge~ 125 (176)
++.
T Consensus 128 ~~~ 130 (163)
T 1x5b_A 128 QKD 130 (163)
T ss_dssp TTC
T ss_pred cCC
Confidence 754
No 100
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=67.33 E-value=34 Score=32.55 Aligned_cols=55 Identities=9% Similarity=0.103 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhhcCC--chHHh-hhc--hHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156 66 NLVAIKMLTKVIEQNGK--GPVEL-FLP--NIMPALLQAYENQDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 66 ~~~aLkmLtklv~~~~~--d~l~~-~L~--~iiP~l~~a~~~~~s~VRKaaVfClVal~~ 120 (176)
+.-|+..||.+...-+. |++.. .+. ..+|.+..-+.+.+..||+||..|+-.|..
T Consensus 576 ~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 576 NYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS 635 (778)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 55799999999943221 34433 454 489999999999999999999999887775
No 101
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=65.99 E-value=23 Score=32.33 Aligned_cols=106 Identities=13% Similarity=0.121 Sum_probs=69.9
Q ss_pred hchHhhHHHHHHHHhcChhHHHH-HHH--H--HhhcChH--------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcC
Q psy6156 15 ELFLPNIMPALLQAYENQDSCVR-KCS--V--FCMVALY--------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNG 81 (176)
Q Consensus 15 e~~l~~iL~~LLd~~~d~e~~Vr-kAa--v--~~~v~p~--------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~ 81 (176)
..|...-+|.|++.....+..++ +|+ + ++.-..+ ..++.|..++.+.+......|...|..+...-+
T Consensus 43 ~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~ 122 (584)
T 3l6x_A 43 PNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRD 122 (584)
T ss_dssp CCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSC
T ss_pred CCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCC
Confidence 45667788999988886554443 343 1 1111221 156777888888888888889999998874212
Q ss_pred CchHHhhh-chHHHHHHHhhcC-CChhHHHHHHHHHHHHHH
Q psy6156 82 KGPVELFL-PNIMPALLQAYEN-QDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 82 ~d~l~~~L-~~iiP~l~~a~~~-~~s~VRKaaVfClVal~~ 120 (176)
.+.-..+. ...+|.|++.+.+ .+.++++.|+.||-.+-.
T Consensus 123 ~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~ 163 (584)
T 3l6x_A 123 QDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS 163 (584)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC
Confidence 22222222 3678999999886 678999999888776643
No 102
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=65.63 E-value=33 Score=27.92 Aligned_cols=65 Identities=15% Similarity=0.110 Sum_probs=41.5
Q ss_pred HHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156 51 TRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKE 121 (176)
Q Consensus 51 l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~ 121 (176)
++-|..++.+++.-....|...|+++.+.. +-+-.++-.-.+.|+|+|+.|-|.++-.+-.+...
T Consensus 183 LprL~aLL~D~deiVRaSaVEtL~~lA~~n------pklRkii~~kl~e~~D~S~lv~~~V~egL~rl~l~ 247 (253)
T 2db0_A 183 LPRIINLLHDGDEIVRASAVEALVHLATLN------DKLRKVVIKRLEELNDTSSLVNKTVKEGISRLLLL 247 (253)
T ss_dssp HHHHHGGGGCSSHHHHHHHHHHHHHHHTSC------HHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHcCcchhhhHHHHHHHHHHHHcC------HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555666666666221 22444555667889999999999999888766543
No 103
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=65.09 E-value=7.3 Score=31.55 Aligned_cols=19 Identities=26% Similarity=0.165 Sum_probs=13.5
Q ss_pred HHHHHhhcCCChhHHHHHHH
Q psy6156 94 PALLQAYENQDSCVRKCSVF 113 (176)
Q Consensus 94 P~l~~a~~~~~s~VRKaaVf 113 (176)
|.+..- +|+.+.||+++..
T Consensus 221 ~~L~~L-~D~~~~VR~aa~~ 239 (244)
T 1lrv_A 221 EALREL-DEPDPEVRLAIAG 239 (244)
T ss_dssp HHHHHC-CCCCHHHHHHHHC
T ss_pred HHHHHc-cCCCHHHHHHHHH
Confidence 444444 8899999988753
No 104
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=60.90 E-value=30 Score=24.75 Aligned_cols=61 Identities=11% Similarity=0.151 Sum_probs=44.9
Q ss_pred hhHHHHHHHHhcChhHHHHHHHHHhhcC---hHHHHHhhhhhhhccCcchHHHHHHHHHHHHhh
Q psy6156 19 PNIMPALLQAYENQDSCVRKCSVFCMVA---LYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQ 79 (176)
Q Consensus 19 ~~iL~~LLd~~~d~e~~VrkAav~~~v~---p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~ 79 (176)
+..+...|+...+..+.+..++.+++-. ...+..++...+.....+.++..|=++..++..
T Consensus 6 ~~~l~~~L~~L~~s~~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~n 69 (135)
T 4fu3_A 6 ESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQN 69 (135)
T ss_dssp HHHHHHHHHHCCSSTTHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 4556666777777778888887666543 334778888888888888889999888888744
No 105
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=59.07 E-value=46 Score=27.91 Aligned_cols=100 Identities=13% Similarity=0.051 Sum_probs=61.3
Q ss_pred CCchhchHhhHHHHHHHHhcChhHHHHHHHHHhhcChHHHHHhhhhhhhcc-----------CcchHHHHHHHHHHHHhh
Q psy6156 11 KGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTRILFPLIIAE-----------EHPINLVAIKMLTKVIEQ 79 (176)
Q Consensus 11 ~~~~e~~l~~iL~~LLd~~~d~e~~VrkAav~~~v~p~~~l~vL~p~l~~~-----------~~~~~~~aLkmLtklv~~ 79 (176)
+.+.++.+...+-.|.....|. -.|++.+- ...++.|..++... .......|...|+.+...
T Consensus 42 ~~~~~~~~~~A~~aL~nls~d~--e~R~~i~~-----~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~ 114 (354)
T 3nmw_A 42 PAPVEHQICPAVCVLMKLSFDE--EHRHAMNE-----LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFG 114 (354)
T ss_dssp CCGGGGTHHHHHHHHHHHHTSH--HHHHHHHH-----TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSS
T ss_pred CCcchHHHHHHHHHHHHHcCCH--HHHHHHHH-----cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcC
Confidence 4566777777777777777773 34543211 12333344443211 122344677777777622
Q ss_pred cCCchHHhh---hchHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156 80 NGKGPVELF---LPNIMPALLQAYENQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 80 ~~~d~l~~~---L~~iiP~l~~a~~~~~s~VRKaaVfClVal~ 119 (176)
+ ++.... .+..+|.|++.+++.+.+|+..|+.++-.+.
T Consensus 115 -~-~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs 155 (354)
T 3nmw_A 115 -D-VANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLS 155 (354)
T ss_dssp -C-HHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred -C-HHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 2 222222 4678999999999999999999999887664
No 106
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=58.97 E-value=24 Score=31.68 Aligned_cols=69 Identities=25% Similarity=0.197 Sum_probs=49.1
Q ss_pred HHHHhhhhhhhc----------cCcchHHHHHHHHHHHHhhcCCc-hHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy6156 49 KVTRILFPLIIA----------EEHPINLVAIKMLTKVIEQNGKG-PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVA 117 (176)
Q Consensus 49 ~~l~vL~p~l~~----------~~~~~~~~aLkmLtklv~~~~~d-~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVa 117 (176)
+.++.|..++.+ .+..+...|+.=+..+|++.+.. .+.+.++ .-..+.+-|+|..++||+.|..|.=.
T Consensus 395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg-~K~~VM~Lm~h~d~~Vr~~AL~avQk 473 (480)
T 1ho8_A 395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTG-GKADIMELLNHSDSRVKYEALKATQA 473 (480)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHS-HHHHHHHHTSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcC-cHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 478888888863 24455566888899999665543 2223333 35667889999999999999999765
Q ss_pred H
Q psy6156 118 L 118 (176)
Q Consensus 118 l 118 (176)
+
T Consensus 474 l 474 (480)
T 1ho8_A 474 I 474 (480)
T ss_dssp H
T ss_pred H
Confidence 4
No 107
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=58.90 E-value=19 Score=32.82 Aligned_cols=70 Identities=7% Similarity=-0.041 Sum_probs=50.9
Q ss_pred HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156 50 VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 50 ~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~ 120 (176)
.++.|...+.+++......|...|..+.. .+.+.-..+. ...||.|++.+.+.+.+|+..|+.+|-.|..
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~-~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~ 119 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCY-RNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISF 119 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHc-CChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 56677777777777777777788888872 2222222222 3568999999999999999999999877653
No 108
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=58.81 E-value=1.4e+02 Score=29.18 Aligned_cols=131 Identities=15% Similarity=0.089 Sum_probs=75.1
Q ss_pred chHhhHHHHHHHHhcC------------hhHHHHHHH-----HHhhcChHHHHHhhh-------hhhhccC-c--chHHH
Q psy6156 16 LFLPNIMPALLQAYEN------------QDSCVRKCS-----VFCMVALYKVTRILF-------PLIIAEE-H--PINLV 68 (176)
Q Consensus 16 ~~l~~iL~~LLd~~~d------------~e~~VrkAa-----v~~~v~p~~~l~vL~-------p~l~~~~-~--~~~~~ 68 (176)
+++..+|.+|+....| +..-||.+| -++.-.+...++.+. .++...+ - .....
T Consensus 568 ~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~ 647 (1204)
T 3a6p_A 568 EFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCA 647 (1204)
T ss_dssp GGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHH
T ss_pred hHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHH
Confidence 5788888888888765 334566554 222223333322222 2233222 1 11112
Q ss_pred HHHHHHHHHhhcCCchH-HhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcH-HH-HH-----
Q psy6156 69 AIKMLTKVIEQNGKGPV-ELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSG-AK-LK----- 140 (176)
Q Consensus 69 aLkmLtklv~~~~~d~l-~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~-~k-~k----- 140 (176)
-...+..+....++++- ...+..+++.+.+.+.+ +++++ ++...-.++..+|-....+|....++ ++ ++
T Consensus 648 L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~--~~~~~-~~s~~~~f~~~~G~~~~~~~~~~~d~~~~~r~~l~~~ 724 (1204)
T 3a6p_A 648 LMEALVLISNQFKNYERQKVFLEELMAPVASIWLS--QDMHR-VLSDVDAFIAYVGTDQKSCDPGLEDPCGLNRARMSFC 724 (1204)
T ss_dssp HHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC--HHHHH-HHHCHHHHHHHHTSSCC--CTTCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcc--HHHHH-hhcCHHHHHHHhCCCCCcccccccchhhhhHHHHHHH
Confidence 22222222333344444 44599999999998864 44665 56666789999999988888887766 33 34
Q ss_pred --HHHHHHhhh
Q psy6156 141 --LLQLYIKRS 149 (176)
Q Consensus 141 --Ll~iYi~R~ 149 (176)
.+.-.++|.
T Consensus 725 ~~~l~~~l~r~ 735 (1204)
T 3a6p_A 725 VYSILGVVKRT 735 (1204)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 688888985
No 109
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=58.11 E-value=51 Score=27.35 Aligned_cols=76 Identities=12% Similarity=0.194 Sum_probs=57.9
Q ss_pred HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcc
Q psy6156 49 KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVL 127 (176)
Q Consensus 49 ~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l 127 (176)
.-+.+|.+++.+++......++-.+.+++++.+...=...+..++|.++....+.. +|-++..+=.+-..+++..+
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~d---Ekval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQEN---EKVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTT---HHHHHHHHHHHHHHHTTCCB
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccc---hhHHHHHHHHHHHHHcCCCC
Confidence 47888999998888889999999999999997766666677788888887765544 55566666666666766633
No 110
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=57.19 E-value=92 Score=29.59 Aligned_cols=97 Identities=10% Similarity=0.160 Sum_probs=63.2
Q ss_pred hHHHHHHHHhcChhHHHHHHHHH--h--hcChHH---------------HHHhhhhhhhccCcchHHH---HHHHHHHHH
Q psy6156 20 NIMPALLQAYENQDSCVRKCSVF--C--MVALYK---------------VTRILFPLIIAEEHPINLV---AIKMLTKVI 77 (176)
Q Consensus 20 ~iL~~LLd~~~d~e~~VrkAav~--~--~v~p~~---------------~l~vL~p~l~~~~~~~~~~---aLkmLtklv 77 (176)
..+|.|.+...+....||+||.. | +..|+. .++.|.-++++++.++..+ ||-+++.-.
T Consensus 606 ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~ 685 (778)
T 3opb_A 606 VYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI 685 (778)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 37888888888777888888621 1 113321 2556777778888877775 455554322
Q ss_pred hhcCCchHHhhh--chHHHHHHHhhcC--CChhHHHHHHHHHHHHHH
Q psy6156 78 EQNGKGPVELFL--PNIMPALLQAYEN--QDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 78 ~~~~~d~l~~~L--~~iiP~l~~a~~~--~~s~VRKaaVfClVal~~ 120 (176)
+.. ....+ +..+..++.-+.+ ...++|--+++|+-.|..
T Consensus 686 ~~i----a~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 686 PLI----AKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHH----HHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred hHH----HHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 111 12222 3577777777777 899999999998887775
No 111
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=57.02 E-value=55 Score=23.96 Aligned_cols=80 Identities=13% Similarity=0.085 Sum_probs=54.2
Q ss_pred ChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcC
Q psy6156 46 ALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGE 124 (176)
Q Consensus 46 ~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe 124 (176)
.|..+++.|.--++..+...-+.||.+|..+++..+..--..+- .+++..+.+-...+.+.|++-+...+-+....+++
T Consensus 39 ~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 39 GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 45567788888888777777778999999999776653221111 23333333444457889999888888888877776
Q ss_pred C
Q psy6156 125 S 125 (176)
Q Consensus 125 ~ 125 (176)
+
T Consensus 119 ~ 119 (140)
T 3ldz_A 119 D 119 (140)
T ss_dssp C
T ss_pred C
Confidence 5
No 112
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=56.30 E-value=80 Score=25.66 Aligned_cols=82 Identities=15% Similarity=0.323 Sum_probs=50.6
Q ss_pred HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcccc
Q psy6156 50 VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSP 129 (176)
Q Consensus 50 ~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P 129 (176)
+++-+...+.+.+.--+++||..+.. ++..... ...-++|.+..-.+|-+--||-+||-.++
T Consensus 145 v~rdi~smltskd~~Dkl~aLnFi~a----lGen~~~-yv~PfLprL~aLL~D~deiVRaSaVEtL~------------- 206 (253)
T 2db0_A 145 IVRDFMSMLSSKNREDKLTALNFIEA----MGENSFK-YVNPFLPRIINLLHDGDEIVRASAVEALV------------- 206 (253)
T ss_dssp HHHHHHHHTSCSSHHHHHHHHHHHHT----CCTTTHH-HHGGGHHHHHGGGGCSSHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHH----HhccCcc-ccCcchHHHHHHHcCcchhhhHHHHHHHH-------------
Confidence 33444444455455555566655443 3333332 34456789999999999999999999998
Q ss_pred ccccCcHHHHHHHHHHHhhh
Q psy6156 130 YINKLSGAKLKLLQLYIKRS 149 (176)
Q Consensus 130 ~L~~L~~~k~kLl~iYi~R~ 149 (176)
|+..+|+.=+|.+.--.++-
T Consensus 207 ~lA~~npklRkii~~kl~e~ 226 (253)
T 2db0_A 207 HLATLNDKLRKVVIKRLEEL 226 (253)
T ss_dssp HHHTSCHHHHHHHHHHHHHC
T ss_pred HHHHcCHHHHHHHHHHHHHh
Confidence 45555665555554444443
No 113
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=55.07 E-value=65 Score=27.31 Aligned_cols=63 Identities=11% Similarity=0.116 Sum_probs=46.7
Q ss_pred CcchH-HHHHHHHHHHHhhcCCchH---HhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcC
Q psy6156 62 EHPIN-LVAIKMLTKVIEQNGKGPV---ELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGE 124 (176)
Q Consensus 62 ~~~~~-~~aLkmLtklv~~~~~d~l---~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe 124 (176)
++|-- ..=.++|..+.++.-.--+ .+....++-++++|+.|+..+|.-.+..++-++..-+++
T Consensus 134 eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~ 200 (321)
T 1w9c_A 134 EYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ 200 (321)
T ss_dssp CSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhc
Confidence 55543 3456777777644333222 345678888999999999999999999999999988864
No 114
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=54.60 E-value=27 Score=32.57 Aligned_cols=70 Identities=20% Similarity=0.309 Sum_probs=54.8
Q ss_pred HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHh-hh--chHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156 50 VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVEL-FL--PNIMPALLQAYENQDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 50 ~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~-~L--~~iiP~l~~a~~~~~s~VRKaaVfClVal~~ 120 (176)
-+..|...+++.++-.+..++++|+.++.. .++.+.+ ++ |.=+|.|+...+|..-.+|-.++-.+.++..
T Consensus 123 ~i~~Ll~lL~~~df~vR~~alqlL~~L~~~-r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~ 195 (651)
T 3grl_A 123 NVTLLLSLLEEFDFHVRWPGVKLLTSLLKQ-LGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTR 195 (651)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-SHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHHHHhc-CcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhc
Confidence 567778888999999999999999999944 4444433 33 5789999999999988888877777766653
No 115
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=46.64 E-value=82 Score=22.95 Aligned_cols=95 Identities=11% Similarity=0.136 Sum_probs=58.8
Q ss_pred HhhHHHHHHHHhcChhHHHHHHHHHhhcCh---HHHHHhhhhhhhcc--CcchHHHHHHHHHHHHhhcCC---chHHhhh
Q psy6156 18 LPNIMPALLQAYENQDSCVRKCSVFCMVAL---YKVTRILFPLIIAE--EHPINLVAIKMLTKVIEQNGK---GPVELFL 89 (176)
Q Consensus 18 l~~iL~~LLd~~~d~e~~VrkAav~~~v~p---~~~l~vL~p~l~~~--~~~~~~~aLkmLtklv~~~~~---d~l~~~L 89 (176)
-+..+...|....+..+.+..++.+++-.- ..+..++.-.+... +...++..|=++.-++...-. .+.....
T Consensus 4 s~~~l~~kL~~L~~sq~sIq~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~~~F 83 (142)
T 2km4_A 4 SSEQFTTKLNTLEDSQESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQDSF 83 (142)
T ss_dssp CHHHHHHHHHTCCSCHHHHHHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHHHHH
T ss_pred CHHHHHHHHHhccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHHHHH
Confidence 345667778888888899999988876533 45778888888765 556777778788777644332 3333333
Q ss_pred chHHHH-HHHhhcCCChhHHHHHH
Q psy6156 90 PNIMPA-LLQAYENQDSCVRKCSV 112 (176)
Q Consensus 90 ~~iiP~-l~~a~~~~~s~VRKaaV 112 (176)
..++|. +..+|....+++++...
T Consensus 84 ~~~L~~~~~~~~~~~~~~~~~kv~ 107 (142)
T 2km4_A 84 GKVAAEVLGRINQEFPRDLKKKLS 107 (142)
T ss_dssp HHTHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 223332 33444445666665533
No 116
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=45.91 E-value=95 Score=23.50 Aligned_cols=80 Identities=13% Similarity=0.068 Sum_probs=56.7
Q ss_pred ChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhh-chHHHHHHHhhc------CCChhHHHHHHHHHHHH
Q psy6156 46 ALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFL-PNIMPALLQAYE------NQDSCVRKCSVFCMVAL 118 (176)
Q Consensus 46 ~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L-~~iiP~l~~a~~------~~~s~VRKaaVfClVal 118 (176)
.|..+++.|.--|++.+...-+.||.+|..+++..+..--.++. .+++..|.+... .+...||+-+...+-+.
T Consensus 47 ~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 47 GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 45668888888888888878888999999999776643222222 244555555543 46789999888888888
Q ss_pred HHHhcCC
Q psy6156 119 YKEFGES 125 (176)
Q Consensus 119 ~~~lGe~ 125 (176)
...+++.
T Consensus 127 ~~~f~~~ 133 (171)
T 1juq_A 127 TMALPEE 133 (171)
T ss_dssp HHHCTTC
T ss_pred HHHcCCC
Confidence 7777653
No 117
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe}
Probab=44.33 E-value=14 Score=35.70 Aligned_cols=37 Identities=16% Similarity=0.119 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCCccccccccCcH---HHHHHHHHHHh
Q psy6156 110 CSVFCMVALYKEFGESVLSPYINKLSG---AKLKLLQLYIK 147 (176)
Q Consensus 110 aaVfClVal~~~lGe~~l~P~L~~L~~---~k~kLl~iYi~ 147 (176)
-++.=.|-||+.+||+ +.|||+.|+- +=-.|+++|.+
T Consensus 324 RiIDDfVfmcFfvGND-FLPhlP~l~I~egaid~L~~~Yk~ 363 (899)
T 3fqd_A 324 RAIDDWVFFIFFVGND-FLPHLPSLDIRDGAVERLTEIWRA 363 (899)
T ss_dssp HHHHHHHHHGGGGCCS-SSCCCTTCCGGGTHHHHHHHHHHH
T ss_pred hhhhhhhhhhHhhCcc-cCCCCCccCcCCChHHHHHHHHHH
Confidence 4567788899999999 9999998863 33567888864
No 118
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=44.26 E-value=71 Score=27.95 Aligned_cols=70 Identities=13% Similarity=0.097 Sum_probs=44.4
Q ss_pred HHHhhhhhhhccCc----chHHHHHHHHHHHHh--hcCCchHHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156 50 VTRILFPLIIAEEH----PINLVAIKMLTKVIE--QNGKGPVELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 50 ~l~vL~p~l~~~~~----~~~~~aLkmLtklv~--~~~~d~l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~ 119 (176)
.++.|...+.+.+. .....|...|..+.. ..+++...... ...+|.|++.+.+.+.+|+|.|+.++-.+.
T Consensus 331 al~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 331 ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407 (458)
T ss_dssp HHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 45566666655432 234444444444442 12333333333 367999999999999999999999988775
No 119
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=43.69 E-value=86 Score=25.44 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=42.1
Q ss_pred HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156 49 KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 49 ~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~ 119 (176)
++...|...-..++ ..++..|+=..+++=+.+++ .+|+++|.+..--++++.+|||-.+-=+=+.|
T Consensus 16 ~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~----ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~ 81 (257)
T 3gs3_A 16 KVVDWCNELVIASP-STKCELLAKVQETVLGSCAE----LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVC 81 (257)
T ss_dssp HHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGG----GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHh----HHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence 34555555444344 47788888888876455554 45666666666567799999996665444444
No 120
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=43.35 E-value=31 Score=29.35 Aligned_cols=67 Identities=18% Similarity=0.382 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhhcCCch--HHhhhchHHHHHHHhhcCCChhHHHHHHH-HHHHHHHHhcCCcccccccc
Q psy6156 66 NLVAIKMLTKVIEQNGKGP--VELFLPNIMPALLQAYENQDSCVRKCSVF-CMVALYKEFGESVLSPYINK 133 (176)
Q Consensus 66 ~~~aLkmLtklv~~~~~d~--l~~~L~~iiP~l~~a~~~~~s~VRKaaVf-ClVal~~~lGe~~l~P~L~~ 133 (176)
+-..||++...+++..-.+ ....+|.++-.+..=|.+.-++.|-+-|. |+..+..++|+. +.|+++.
T Consensus 46 KkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~-i~~~vp~ 115 (321)
T 1w9c_A 46 KRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGH-ITAEIPQ 115 (321)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGG-GGGGHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHH-hhhhHHH
Confidence 4467899999995542211 13344555555567788888999987665 677788999988 8888753
No 121
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=39.25 E-value=1.2e+02 Score=22.57 Aligned_cols=80 Identities=14% Similarity=0.073 Sum_probs=57.4
Q ss_pred ChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhh-chHHHHHHHhhc------CCChhHHHHHHHHHHHH
Q psy6156 46 ALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFL-PNIMPALLQAYE------NQDSCVRKCSVFCMVAL 118 (176)
Q Consensus 46 ~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L-~~iiP~l~~a~~------~~~s~VRKaaVfClVal 118 (176)
.|..+++.|.--|++.+...-+.||.+|..+++..+..--.++- .+++..|.+.+. .+...||+-+...+-+.
T Consensus 45 ~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 45 GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 46678888888888888888889999999999777754322222 255555555553 47889999888777777
Q ss_pred HHHhcCC
Q psy6156 119 YKEFGES 125 (176)
Q Consensus 119 ~~~lGe~ 125 (176)
...++++
T Consensus 125 ~~~f~~~ 131 (149)
T 3g2s_A 125 TVGLPEE 131 (149)
T ss_dssp HHHCTTC
T ss_pred HHHhCCC
Confidence 7766543
No 122
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=38.76 E-value=1.5e+02 Score=25.58 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=47.9
Q ss_pred hHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156 47 LYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYK 120 (176)
Q Consensus 47 p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~ 120 (176)
-++++..|...-...+ ..++..|+=..+++-+.++ ..|++++|.+.+-..|++.+|||..+-=+=+.|.
T Consensus 24 ~~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dp----sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~ 92 (386)
T 3o2t_A 24 SERVVDLLNQAALITN-DSKITVLKQVQELIINKDP----TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACK 92 (386)
T ss_dssp HHHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCG----GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCH----HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHH
Confidence 3456666665544333 3677888888887534444 3789999999999999999999987755554443
No 123
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=38.30 E-value=1.3e+02 Score=27.26 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=28.2
Q ss_pred hhHHHHHHHHhcChhHHHHHHHH---Hhh---cChHHHHHhhhhhhhccCcchHHHHHHHHHHHH
Q psy6156 19 PNIMPALLQAYENQDSCVRKCSV---FCM---VALYKVTRILFPLIIAEEHPINLVAIKMLTKVI 77 (176)
Q Consensus 19 ~~iL~~LLd~~~d~e~~VrkAav---~~~---v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv 77 (176)
+..+-.++|...|.+..||..|+ ... -...++..+|..++++++..-...+=+.|..++
T Consensus 64 ~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sll 128 (507)
T 3u0r_A 64 DSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQTDDSAEFNLVNNALLSIF 128 (507)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 34555556666665555555541 111 113345556666666554444434444444444
No 124
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=38.07 E-value=1.2e+02 Score=22.38 Aligned_cols=79 Identities=13% Similarity=0.083 Sum_probs=56.6
Q ss_pred ChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhh-chHHHHHHHhhcC------CChhHHHHHHHHHHHH
Q psy6156 46 ALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFL-PNIMPALLQAYEN------QDSCVRKCSVFCMVAL 118 (176)
Q Consensus 46 ~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L-~~iiP~l~~a~~~------~~s~VRKaaVfClVal 118 (176)
.|..+++.|.--|++.+...-+.||.+|..+++..|..--..+. .+++--+.+-+.+ +...||+-+...+-+.
T Consensus 35 ~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 35 GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 35667888888888888888889999999999777754322222 3666667766543 5789999777777766
Q ss_pred HHHhcC
Q psy6156 119 YKEFGE 124 (176)
Q Consensus 119 ~~~lGe 124 (176)
...+++
T Consensus 115 ~~~f~~ 120 (148)
T 1mhq_A 115 TVWFPE 120 (148)
T ss_dssp HHHCTT
T ss_pred HHHcCC
Confidence 666654
No 125
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=37.93 E-value=14 Score=36.74 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCCccccccccCc---HHHHHHHHHHHh
Q psy6156 111 SVFCMVALYKEFGESVLSPYINKLS---GAKLKLLQLYIK 147 (176)
Q Consensus 111 aVfClVal~~~lGe~~l~P~L~~L~---~~k~kLl~iYi~ 147 (176)
++.=.|-||+.+||+ +.|||+.|+ ++=-.|+++|.+
T Consensus 277 iiDDfVflcf~vGND-FLPhlP~l~I~~g~i~~L~~~Yk~ 315 (1155)
T 3pie_A 277 VLDDFIFVLFTIGND-FLPNLPDLHLKKGAFPVLLQTFKE 315 (1155)
T ss_pred hhcceeeehhhhCcc-cCCCCCccCcCCChHHHHHHHHHH
Confidence 344567799999999 999999885 444577888865
No 126
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=35.90 E-value=28 Score=34.57 Aligned_cols=40 Identities=20% Similarity=0.070 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCccccccccCc---HHHHHHHHHHHhhhc
Q psy6156 110 CSVFCMVALYKEFGESVLSPYINKLS---GAKLKLLQLYIKRSQ 150 (176)
Q Consensus 110 aaVfClVal~~~lGe~~l~P~L~~L~---~~k~kLl~iYi~R~~ 150 (176)
.++.=.|-||+.+||+ +.|||+.|+ ++=-.|+++|.+.-.
T Consensus 273 riidDfVfl~fl~GND-FLP~lp~l~I~~gai~~L~~~Y~~~~~ 315 (1140)
T 2y35_A 273 QLIDDWVLMGFLVGND-FIPHLPCLHISSNALPLLYRTYIGIYP 315 (1140)
T ss_dssp HHHHHHHHHHHHHCCT-TSCCCTTCCTTTTHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhCCc-cCCCCCccccCCCHHHHHHHHHHHHHH
Confidence 4667778899999998 999999986 444567899987643
No 127
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=35.36 E-value=1.2e+02 Score=29.54 Aligned_cols=104 Identities=9% Similarity=-0.026 Sum_probs=68.2
Q ss_pred hHHHHHHHHhcChh-HHHHHHH---H--HhhcC-h-HHHHHhhhhhhhcc---------------CcchHHHHHHHHHHH
Q psy6156 20 NIMPALLQAYENQD-SCVRKCS---V--FCMVA-L-YKVTRILFPLIIAE---------------EHPINLVAIKMLTKV 76 (176)
Q Consensus 20 ~iL~~LLd~~~d~e-~~VrkAa---v--~~~v~-p-~~~l~vL~p~l~~~---------------~~~~~~~aLkmLtkl 76 (176)
.++..++.+..|.. --||++| + +.... + ..+-+.+......- .....++|+--|..+
T Consensus 843 ~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~Al 922 (997)
T 1vsy_5 843 KILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAI 922 (997)
T ss_dssp HTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHH
Confidence 45666777778888 7788865 1 11122 3 33222222221111 114678999999999
Q ss_pred HhhcCCch-HHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcC
Q psy6156 77 IEQNGKGP-VELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGE 124 (176)
Q Consensus 77 v~~~~~d~-l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe 124 (176)
|...+-+- +.+-+|+++-.|....+++.+ |++++-.|+-++...=.+
T Consensus 923 V~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~D 970 (997)
T 1vsy_5 923 ISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRAD 970 (997)
T ss_dssp HTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTST
T ss_pred HhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccch
Confidence 97666664 567888888888888888554 999999999998765444
No 128
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=35.21 E-value=28 Score=28.94 Aligned_cols=98 Identities=11% Similarity=0.216 Sum_probs=58.3
Q ss_pred HHHHhCCCchhchHhhHHHHHHHHhcCh--hHHHHHHHHHhhcChHH---HHHhhhhhhhccCcchHHHHHHHHHHHHhh
Q psy6156 5 VIEQNGKGPVELFLPNIMPALLQAYENQ--DSCVRKCSVFCMVALYK---VTRILFPLIIAEEHPINLVAIKMLTKVIEQ 79 (176)
Q Consensus 5 ~~e~~~~~~~e~~l~~iL~~LLd~~~d~--e~~VrkAav~~~v~p~~---~l~vL~p~l~~~~~~~~~~aLkmLtklv~~ 79 (176)
.++...++..+..+..+.+.+++.+.|. .-+|.+ ++...++++ .++.+.+.+.. .-...-+-+.+.++++.
T Consensus 44 ~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQk--lle~~~~~~~~~i~~~i~g~~~~--l~~~~~G~rvvQk~le~ 119 (351)
T 3gvo_A 44 KLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQK--FFEFGSLDQKLALATRIRGHVLP--LALQMYGCRVIQKALES 119 (351)
T ss_dssp HHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHH--HHHHCCHHHHHHHHHHHTTCHHH--HHTSTTHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHH--HHhhCCHHHHHHHHHHHHhhHHH--HhhCHHhHHHHHHHHHh
Confidence 3444444555666777777777777775 356665 444455554 33333332210 00111255677777777
Q ss_pred cCCchHHhhhchHHHHHHHhhcCCChh
Q psy6156 80 NGKGPVELFLPNIMPALLQAYENQDSC 106 (176)
Q Consensus 80 ~~~d~l~~~L~~iiP~l~~a~~~~~s~ 106 (176)
.+.++-...+.++.|.+...+.|+...
T Consensus 120 ~~~~~~~~i~~el~~~~~~L~~d~~Gn 146 (351)
T 3gvo_A 120 ISSDQQSEMVKELDGHVLKCVKDQNGN 146 (351)
T ss_dssp SCHHHHHHHHGGGTTCHHHHHHSTTHH
T ss_pred CCHHHHHHHHHHhhhhHHHHHHhhhhh
Confidence 777777777888888888888777653
No 129
>1yod_A Water-solublized phospholamban; protein design, water-soluble, de novo protein; 1.80A {Synthetic}
Probab=34.76 E-value=28 Score=19.34 Aligned_cols=14 Identities=43% Similarity=0.662 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhhh
Q psy6156 136 GAKLKLLQLYIKRS 149 (176)
Q Consensus 136 ~~k~kLl~iYi~R~ 149 (176)
.++++|-++|++|-
T Consensus 2 qArqNlQ~LfvNfc 15 (30)
T 1yod_A 2 QARQNLQNLYINRC 15 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 57899999999984
No 130
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=34.43 E-value=38 Score=26.71 Aligned_cols=56 Identities=13% Similarity=-0.033 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhh-cCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhc
Q psy6156 67 LVAIKMLTKVIEQ-NGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFG 123 (176)
Q Consensus 67 ~~aLkmLtklv~~-~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lG 123 (176)
..++++|..+.+. .|-+.+..+ ++.+..+..+++++++.+|+.|..-+.++|..=|
T Consensus 72 ~~~l~CLkalmn~~~G~~~vl~~-~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~ 128 (233)
T 2f31_A 72 HEIIRCLKAFMNNKFGIKTMLET-EEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQ 128 (233)
T ss_dssp HHHHHHHHHHTSSHHHHHHHHTS-SSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHhCChHHHHHHHcC-cHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCC
Confidence 4578888777532 122333322 5678999999999999999999999998887654
No 131
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=31.87 E-value=54 Score=31.83 Aligned_cols=65 Identities=6% Similarity=0.086 Sum_probs=48.8
Q ss_pred HHHhhhhhhh-ccCcchHHHHHHHHHHHHhh----cCCchHHhhhchHHHHHHHhhcCCC-hhHHHHHHHHHHHHH
Q psy6156 50 VTRILFPLII-AEEHPINLVAIKMLTKVIEQ----NGKGPVELFLPNIMPALLQAYENQD-SCVRKCSVFCMVALY 119 (176)
Q Consensus 50 ~l~vL~p~l~-~~~~~~~~~aLkmLtklv~~----~~~d~l~~~L~~iiP~l~~a~~~~~-s~VRKaaVfClVal~ 119 (176)
++..|..+.+ +..| ....+|..+..++=+ ++.++. ..+.-.+.....|+. -|||..|-.||-.+.
T Consensus 802 ~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~----~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll 872 (997)
T 1vsy_5 802 IVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEK----NKILEFVVSNLYNEQFVEVRVRAASILSDIV 872 (997)
T ss_dssp HHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHH----HHTHHHHTTTTTCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHH----HHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 5556665565 5689 999999998775422 233333 467778889999999 999999999998874
No 132
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=30.32 E-value=79 Score=27.00 Aligned_cols=55 Identities=15% Similarity=0.031 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhcCCchHHhhh--chHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhc
Q psy6156 67 LVAIKMLTKVIEQNGKGPVELFL--PNIMPALLQAYENQDSCVRKCSVFCMVALYKEFG 123 (176)
Q Consensus 67 ~~aLkmLtklv~~~~~d~l~~~L--~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lG 123 (176)
..+|++|..+.+. ..-+...+ ++.+..+..+++++.+.||+.|..-|.++|..-+
T Consensus 138 ~~~l~CLkalmN~--~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~ 194 (383)
T 3eg5_B 138 HEIIRCLKAFMNN--KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQ 194 (383)
T ss_dssp HHHHHHHHHHTSS--HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHhcc--hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcC
Confidence 4677887776532 22233333 5678999999999999999999999999887554
No 133
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=30.27 E-value=30 Score=27.78 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=16.8
Q ss_pred HHHHHhhcCCChhHHHHHHHH
Q psy6156 94 PALLQAYENQDSCVRKCSVFC 114 (176)
Q Consensus 94 P~l~~a~~~~~s~VRKaaVfC 114 (176)
|.+....+|+.+.||++++.-
T Consensus 197 ~~L~~Ll~D~d~~VR~~aa~~ 217 (244)
T 1lrv_A 197 DDLLELLHDPDWTVRLAAVEH 217 (244)
T ss_dssp GGGGGGGGCSSHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHc
Confidence 446666899999999998875
No 134
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=28.64 E-value=32 Score=28.76 Aligned_cols=95 Identities=11% Similarity=0.161 Sum_probs=46.8
Q ss_pred HHHhCCCchhchHhhHHHHHHHHhcCh--hHHHHHHHHHhhcChHH---HHHhhhhhhhccCcchHHHHHHHHHHHHhhc
Q psy6156 6 IEQNGKGPVELFLPNIMPALLQAYENQ--DSCVRKCSVFCMVALYK---VTRILFPLIIAEEHPINLVAIKMLTKVIEQN 80 (176)
Q Consensus 6 ~e~~~~~~~e~~l~~iL~~LLd~~~d~--e~~VrkAav~~~v~p~~---~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~ 80 (176)
++....+..+..++.+.+.+++...|. .-+|++ ++...++++ .++.+.+.+.. .-...-+-+.+.++++..
T Consensus 50 l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQk--ll~~~~~~~~~~i~~~~~g~~~~--L~~~~~G~rVlQk~le~~ 125 (369)
T 3k49_A 50 LATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQK--FFEFGSKIQKNTLVDQFKGNMKQ--LSLQMYACRVIQKALEYI 125 (369)
T ss_dssp HTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHH--HHHHCCHHHHHHHHHHHTTCHHH--HHHSTTHHHHHHHHHHHS
T ss_pred hccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHH--HHHhCCHHHHHHHHHHHhhhHHH--HhcChhhHHHHHHHHHhC
Confidence 333333444455555666666666654 245554 343444443 22222222100 000112445566666666
Q ss_pred CCchHHhhhchHHHHHHHhhcCCC
Q psy6156 81 GKGPVELFLPNIMPALLQAYENQD 104 (176)
Q Consensus 81 ~~d~l~~~L~~iiP~l~~a~~~~~ 104 (176)
++++....+.++.|.+...+.|+.
T Consensus 126 ~~~q~~~ii~el~~~~~~L~~d~~ 149 (369)
T 3k49_A 126 DSNQRIELVLELSDSVLQMIKDQN 149 (369)
T ss_dssp CHHHHHHHHGGGTTCHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHHHHHHhcCcc
Confidence 666666666666666666666654
No 135
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=28.04 E-value=1.8e+02 Score=21.44 Aligned_cols=80 Identities=13% Similarity=0.142 Sum_probs=54.8
Q ss_pred cChHHHHHhhhhhhhc-cCcchHHHHHHHHHHHHhhcCCchHHhhh-chHHHH-HHHhhc---CCChhHHHHHHHHHHHH
Q psy6156 45 VALYKVTRILFPLIIA-EEHPINLVAIKMLTKVIEQNGKGPVELFL-PNIMPA-LLQAYE---NQDSCVRKCSVFCMVAL 118 (176)
Q Consensus 45 v~p~~~l~vL~p~l~~-~~~~~~~~aLkmLtklv~~~~~d~l~~~L-~~iiP~-l~~a~~---~~~s~VRKaaVfClVal 118 (176)
..|..+++.|.--|++ .+...-+.||.+|..+++..++.--..+. .+++.. +++... ++...||+-+...+-+.
T Consensus 49 ~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W 128 (157)
T 1elk_A 49 EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSW 128 (157)
T ss_dssp SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 4566788888888874 56667788999999999777654322222 145554 445442 45578999888888777
Q ss_pred HHHhcC
Q psy6156 119 YKEFGE 124 (176)
Q Consensus 119 ~~~lGe 124 (176)
...+++
T Consensus 129 ~~~f~~ 134 (157)
T 1elk_A 129 ADAFRS 134 (157)
T ss_dssp HHHHTT
T ss_pred HHHcCC
Confidence 777765
No 136
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=27.87 E-value=1e+02 Score=22.95 Aligned_cols=70 Identities=9% Similarity=0.169 Sum_probs=44.8
Q ss_pred HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHh--hc---------CCChhHHHHHHHHHHH
Q psy6156 49 KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQA--YE---------NQDSCVRKCSVFCMVA 117 (176)
Q Consensus 49 ~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a--~~---------~~~s~VRKaaVfClVa 117 (176)
.++..|..-++++.+-.+.=||++|..++. .+.+.+...+-.=+..+-++ |+ ++.-.||.+|-.++-.
T Consensus 49 eim~~L~kRL~~k~~~vk~KaL~lL~yL~~-~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~l 127 (140)
T 1vdy_A 49 EFSEFILKRLDNKSPIVKQKALRLIKYAVG-KSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISA 127 (140)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHTT-TSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcceeehHHHHHHHHHH-hCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHH
Confidence 466666667788888788889999999995 45555544444333333322 22 2236799988877665
Q ss_pred HH
Q psy6156 118 LY 119 (176)
Q Consensus 118 l~ 119 (176)
|+
T Consensus 128 l~ 129 (140)
T 1vdy_A 128 IF 129 (140)
T ss_dssp HT
T ss_pred Hh
Confidence 43
No 137
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=26.90 E-value=1.1e+02 Score=23.34 Aligned_cols=54 Identities=13% Similarity=0.206 Sum_probs=42.1
Q ss_pred cCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHHhhhcccCC
Q psy6156 101 ENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSS 154 (176)
Q Consensus 101 ~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi~R~~~~~~ 154 (176)
+..+..+...+....+.+-.-+-..||.+.+..|+..++-.|==||=|-....+
T Consensus 66 ~~~~~~~K~~~~~~Vl~vL~siK~sdI~~~v~~L~~~~~D~LMKYiYkGm~~~~ 119 (152)
T 3dwl_G 66 GNDVQEVRTQYLNAFVDVLSNIRAADIPAFVKECSTEEIDNIVNFIYRGLANPQ 119 (152)
T ss_dssp SCSCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHSCHHHHHHHHHHHHHHTTC--
T ss_pred CCChHHHHHHHHHHHHHHHHHccHHHHHHHHHHhCHHHHHHHHHHHHHhccCcc
Confidence 333467777777777777777777789999999999999999999999986543
No 138
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=25.60 E-value=2.6e+02 Score=26.38 Aligned_cols=116 Identities=10% Similarity=0.126 Sum_probs=77.7
Q ss_pred chhchHhhHHHHHHHHhcChhHHHHH-H----HHHhhcCh---HHHHHhh----hhhhhc---cCcchHHHHHHHHHHHH
Q psy6156 13 PVELFLPNIMPALLQAYENQDSCVRK-C----SVFCMVAL---YKVTRIL----FPLIIA---EEHPINLVAIKMLTKVI 77 (176)
Q Consensus 13 ~~e~~l~~iL~~LLd~~~d~e~~Vrk-A----av~~~v~p---~~~l~vL----~p~l~~---~~~~~~~~aLkmLtklv 77 (176)
..+.+.+.++|-++.+.-.+...+.. + ..++.+.| +.+++.+ .|-+++ .......+||+.|+.++
T Consensus 332 ~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~ 411 (799)
T 1vsy_4 332 CHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVI 411 (799)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHH
Confidence 34667788888888888766544332 2 15556778 8766544 344555 34456668999999987
Q ss_pred hhcCCc-hHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccc
Q psy6156 78 EQNGKG-PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLS 128 (176)
Q Consensus 78 ~~~~~d-~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~ 128 (176)
.-+-.+ ....|+..++..+..++|--..+=.-++..++..+...+.=.|+-
T Consensus 412 r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s 463 (799)
T 1vsy_4 412 RFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLT 463 (799)
T ss_dssp HHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCC
T ss_pred HHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccC
Confidence 666554 345578888888888898777666666777887777766554443
No 139
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=25.10 E-value=1.3e+02 Score=29.27 Aligned_cols=93 Identities=14% Similarity=0.320 Sum_probs=64.7
Q ss_pred hhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC--cc-----
Q psy6156 55 FPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES--VL----- 127 (176)
Q Consensus 55 ~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~--~l----- 127 (176)
...++..+...+.-||+.|..+|.. .=..+.+-+|-+..-|+|.+=.-|+-|-.=.=.+|..+|+- .+
T Consensus 21 l~lL~e~~~~lk~~aL~~l~~~vd~-----~w~eia~~i~~ie~l~ed~~f~~r~laalvaSkvyy~Lg~~~~al~yaL~ 95 (963)
T 4ady_A 21 LALLRENQDSVKTYALESINNVVDQ-----LWSEISNELPDIEALYDDDTFSDREMAALIASKVYYNLGEYESAVKYALA 95 (963)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHH-----HHHHHHTTHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHhh-----hHHHHHhhHHHHHHHHcCCCcchHHHHHHHHHHHheeccchHHHHHHHHh
Confidence 3445677777888999999999954 45666778889999999999999996655555677777763 12
Q ss_pred -ccccccCcHHH------HHHHHHHHhhhccc
Q psy6156 128 -SPYINKLSGAK------LKLLQLYIKRSQTH 152 (176)
Q Consensus 128 -~P~L~~L~~~k------~kLl~iYi~R~~~~ 152 (176)
-+++.--.+++ -|-++-||+..++.
T Consensus 96 aG~~fd~~~~seYv~tiis~cid~y~~~~~~~ 127 (963)
T 4ady_A 96 AKDRFDIDEKSQFVETIVSKSIEMYVQEASKQ 127 (963)
T ss_dssp HGGGSCTTSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCCCCcchHHHHHHHHHHHHHHHHHhhc
Confidence 23333233433 25579999876544
No 140
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=23.22 E-value=1e+02 Score=23.42 Aligned_cols=53 Identities=15% Similarity=0.193 Sum_probs=43.6
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHHhhhcccCCCC
Q psy6156 104 DSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSSSV 156 (176)
Q Consensus 104 ~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi~R~~~~~~~~ 156 (176)
+..+...+....+.+-.-+-..||.+.+..|+..++-.|==||=|-....++.
T Consensus 68 ~q~~K~~~~~~Vl~VL~siK~sdI~~~v~~L~~e~~D~LMKYiYkGm~~~~~~ 120 (151)
T 1k8k_G 68 SQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN 120 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGGGHHHHHHTSCHHHHHHHHHHHHHHHTSCCTT
T ss_pred cHHHHHHHHHHHHHHHHHccHHHHHHHHHHhChhhhhHHHHHHHHhhcCcCCC
Confidence 34777777777777777888778999999999999999999999998765544
No 141
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=22.65 E-value=43 Score=27.78 Aligned_cols=35 Identities=11% Similarity=0.186 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCC
Q psy6156 69 AIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQ 103 (176)
Q Consensus 69 aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~ 103 (176)
+-+.+.++++..++++....+.++.|.+.....|+
T Consensus 181 G~~Vvq~~le~~~~~~~~~ii~~l~~~~~~L~~d~ 215 (351)
T 3gvo_A 181 GCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQ 215 (351)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHTTHHHHHTST
T ss_pred hHHHHHHHHHHCCHHHHHHHHHHHhhhHHhcCCCc
Confidence 45567777777777777777778877776666665
No 142
>4a1q_A ORF E73; viral protein, extremophIle, archaea, ribbon-helix-helix Pro DNA-binding proteins; NMR {Sulfolobus virus ragged hills} PDB: 4aai_A
Probab=21.68 E-value=19 Score=23.54 Aligned_cols=13 Identities=46% Similarity=0.848 Sum_probs=11.5
Q ss_pred HHHHHHHHhhhcc
Q psy6156 139 LKLLQLYIKRSQT 151 (176)
Q Consensus 139 ~kLl~iYi~R~~~ 151 (176)
+||+.+|.+|++.
T Consensus 24 lklvsvylnrdmt 36 (73)
T 4a1q_A 24 LKLVSVYLNRDMT 36 (73)
T ss_dssp HHHHHHHSCCCHH
T ss_pred HHHHHHhhcccHH
Confidence 7899999999874
No 143
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=21.67 E-value=1.4e+02 Score=26.95 Aligned_cols=50 Identities=10% Similarity=0.091 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhcCCchHHhhh-chHHHHHHHhh---cCCChhHHHHHHHHHHHHH
Q psy6156 69 AIKMLTKVIEQNGKGPVELFL-PNIMPALLQAY---ENQDSCVRKCSVFCMVALY 119 (176)
Q Consensus 69 aLkmLtklv~~~~~d~l~~~L-~~iiP~l~~a~---~~~~s~VRKaaVfClVal~ 119 (176)
++.++..+.+ .+.+.+.... ...+|.++..+ +....+|+.+|..|+..+.
T Consensus 160 ~l~lL~~L~e-~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls 213 (684)
T 4gmo_A 160 LLVLIGLLAL-ARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLS 213 (684)
T ss_dssp HHHHHHHHHH-HCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 5556666663 3334343332 35556555443 5566799999999997653
Done!