RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6156
(176 letters)
>gnl|CDD|227427 COG5096, COG5096, Vesicle coat complex, various subunits
[Intracellular trafficking and secretion].
Length = 757
Score = 31.2 bits (71), Expect = 0.25
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 17 FLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTRILFPLIIAEEHPINLVA 69
L NI+ + + + + VRK + + LY++ + L+ + + LVA
Sbjct: 124 LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVA 176
>gnl|CDD|183947 PRK13283, PRK13283, flagellar assembly protein FliW; Provisional.
Length = 134
Score = 29.0 bits (65), Expect = 0.81
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 14/80 (17%)
Query: 65 INLVAI-KMLTKVIEQNGKGPVELFLPN---------IMPALLQAYENQDSCVRKCSVFC 114
+ L I + +K++ Q +E+ L N ++P ++ + DS K V+C
Sbjct: 18 VRLEKIDSLFSKIMGQTNSPALEIVLVNPYCLREYSFVIPKYIELLLDLDSH-SKVEVYC 76
Query: 115 MVALYKEFGESV---LSPYI 131
+V L K +S+ L+P +
Sbjct: 77 VVVLQKNLEDSMVNFLAPLV 96
>gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional.
Length = 389
Score = 29.8 bits (68), Expect = 0.82
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 69 AIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQD 104
AI+ L +V EQ+ P +L ++P L++ Y+
Sbjct: 233 AIEALERVEEQD---PE--YLSEVLPKLMECYQALG 263
>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat. The HEAT repeat family is related
to armadillo/beta-catenin-like repeats (see pfam00514).
Length = 31
Score = 26.3 bits (59), Expect = 1.3
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 21 IMPALLQAYENQDSCVRKCSVFCMVALYKV 50
++P LL+ + D VR+ + + AL +V
Sbjct: 1 LLPLLLELLNDPDPEVREAAAEALGALAEV 30
Score = 25.6 bits (57), Expect = 2.5
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 92 IMPALLQAYENQDSCVRKCSVFCMVALYKEF 122
++P LL+ + D VR+ + + AL +
Sbjct: 1 LLPLLLELLNDPDPEVREAAAEALGALAEVL 31
>gnl|CDD|113011 pfam04221, RelB, RelB antitoxin. RelE and RelB form a
toxin-antitoxin system. RelE represses translation,
probably through binding ribosomes. RelB stably binds
RelE, presumably deactivating it.
Length = 83
Score = 26.7 bits (59), Expect = 2.6
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 69 AIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDS 105
AI++ I G P +L LP L A ++
Sbjct: 30 AIRLFLTQIALTGGIPFDLRLPEPNQRTLVAIMELEA 66
>gnl|CDD|232900 TIGR00272, DPH2, diphthamide biosynthesis protein 2. This protein
has been shown in Saccharomyces cerevisiae to be one of
several required for the modification of a particular
histidine residue of translation elongation factor 2 to
diphthamide. This modified site can then become the
target for ADP-ribosylation by diphtheria toxin [Protein
fate, Protein modification and repair].
Length = 496
Score = 28.0 bits (62), Expect = 3.5
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 69 AIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDS-CVRKCSVFCMVALYKEFGESVL 127
I L K+I+ GK + PA L +E+ D + CS + EF ++
Sbjct: 299 TINELRKMIKTAGKKHYLFVVGKPNPAKLANFEDIDIFVLLGCS-QSGIIDSNEFYRPIV 357
Query: 128 SPY 130
+P+
Sbjct: 358 TPF 360
>gnl|CDD|118307 pfam09775, Keratin_assoc, Keratinocyte-associated protein 2.
Members of this family comprise various
keratinocyte-associated proteins. Their exact function
has not, as yet, been determined.
Length = 131
Score = 26.7 bits (59), Expect = 4.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 35 CVRKCSVFCMVALYKVTRI 53
C+ C +F +VALY V +I
Sbjct: 93 CITTCLIFSVVALYYVNKI 111
Score = 26.7 bits (59), Expect = 4.9
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 10/33 (30%)
Query: 106 CVRKCSVFCMVALYKEFGESVLSPYINKLSGAK 138
C+ C +F +VALY Y+NK+S
Sbjct: 93 CITTCLIFSVVALY----------YVNKISQKV 115
>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region. This family
consists of the N terminal region of various alpha, beta
and gamma subunits of the AP-1, AP-2 and AP-3 adaptor
protein complexes. The adaptor protein (AP) complexes
are involved in the formation of clathrin-coated pits
and vesicles. The N-terminal region of the various
adaptor proteins (APs) is constant by comparison to the
C-terminal which is variable within members of the AP-2
family; and it has been proposed that this constant
region interacts with another uniform component of the
coated vesicles.
Length = 522
Score = 26.8 bits (60), Expect = 7.4
Identities = 11/66 (16%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 69 AIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLS 128
A++ L+ + ++ P + + ++D VRK + ++ LY++ + V
Sbjct: 98 ALRTLSCIRVPE-------LARDLAPDIKKLLVDRDPYVRKKAALAILKLYRKDPDLVRD 150
Query: 129 PYINKL 134
+ +L
Sbjct: 151 FLVPEL 156
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.137 0.393
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,428,995
Number of extensions: 746179
Number of successful extensions: 529
Number of sequences better than 10.0: 1
Number of HSP's gapped: 527
Number of HSP's successfully gapped: 18
Length of query: 176
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 86
Effective length of database: 6,945,742
Effective search space: 597333812
Effective search space used: 597333812
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.2 bits)