RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6156
(176 letters)
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat,
micro plus END, +TIP, protein binding; 2.10A {Drosophila
melanogaster}
Length = 242
Score = 69.3 bits (169), Expect = 6e-15
Identities = 19/141 (13%), Positives = 54/141 (38%), Gaps = 7/141 (4%)
Query: 17 FLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVT---RILFPLIIAEEHPINLV---AI 70
+ +P+LL+ ++ + V + A+Y T ++ + + V
Sbjct: 95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETA 154
Query: 71 KMLTKVIEQNG-KGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSP 129
+ + + + + L + +L++ D VR S + L K G+ ++P
Sbjct: 155 LFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTP 214
Query: 130 YINKLSGAKLKLLQLYIKRSQ 150
+ + K+ ++ ++++
Sbjct: 215 LLADVDPLKMAKIKECQEKAE 235
Score = 33.1 bits (75), Expect = 0.029
Identities = 8/46 (17%), Positives = 16/46 (34%)
Query: 5 VIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKV 50
+ + L + +L++ D VR S + L K+
Sbjct: 161 LTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat,
microtubule plus END, +TIP, protein binding; 1.70A
{Saccharomyces cerevisiae}
Length = 249
Score = 51.2 bits (122), Expect = 2e-08
Identities = 20/147 (13%), Positives = 47/147 (31%), Gaps = 16/147 (10%)
Query: 17 FLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTRILFPLIIAEE----------HPIN 66
++ + LL + + V + ++ + K L E+ H
Sbjct: 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTP 160
Query: 67 LV---AIKMLTKVIEQNGKGPVEL---FLPNIMPALLQAYENQDSCVRKCSVFCMVALYK 120
+ ++ +++ G L ++P ++Q + +R L K
Sbjct: 161 QIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220
Query: 121 EFGESVLSPYINKLSGAKLKLLQLYIK 147
FG + + L K K ++ +K
Sbjct: 221 IFGMNTFVKTLEHLDNLKRKKIEETVK 247
Score = 29.3 bits (65), Expect = 0.54
Identities = 5/48 (10%), Positives = 13/48 (27%), Gaps = 2/48 (4%)
Query: 13 PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVT--RILFPLI 58
++P ++Q + +R L K+ +
Sbjct: 184 LQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTL 231
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 46.5 bits (110), Expect = 1e-06
Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 13/128 (10%)
Query: 14 VELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYK----------VTRILFPLIIAEEH 63
+ +++PA+++ E+ VR + M L + + ++ +
Sbjct: 396 IRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVY 455
Query: 64 PINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFG 123
I A L K++E+ GK E I+P +L + + R ++FC+ L + G
Sbjct: 456 AIREAATSNLKKLVEKFGK---EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG 512
Query: 124 ESVLSPYI 131
+ + + ++
Sbjct: 513 QDITTKHM 520
Score = 41.9 bits (98), Expect = 4e-05
Identities = 17/132 (12%), Positives = 45/132 (34%), Gaps = 13/132 (9%)
Query: 13 PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTR------ILFPLIIA-EEHPI 65
VE F + + + +R+ + + L + + P ++A P
Sbjct: 434 GVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPN 493
Query: 66 NLV---AIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEF 122
L + + + E G+ ++ +++P +L+ + + VR + +
Sbjct: 494 YLHRMTTLFCINVLSEVCGQ---DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPIL 550
Query: 123 GESVLSPYINKL 134
S L + +
Sbjct: 551 DNSTLQSEVKPI 562
Score = 37.7 bits (87), Expect = 0.001
Identities = 20/130 (15%), Positives = 45/130 (34%), Gaps = 13/130 (10%)
Query: 15 ELFLPNIMPALLQAYENQDSCVRKCSVFCM----------VALYKVTRILFPLIIAEEHP 64
+ + I+P + + + + V+ + + + + + E
Sbjct: 319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPE 378
Query: 65 INLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGE 124
+ L I L V E G + +++PA+++ E+ VR + M L + G
Sbjct: 379 VRLNIISNLDCVNEVIG---IRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV 435
Query: 125 SVLSPYINKL 134
+N L
Sbjct: 436 EFFDEKLNSL 445
Score = 36.1 bits (83), Expect = 0.004
Identities = 23/165 (13%), Positives = 46/165 (27%), Gaps = 18/165 (10%)
Query: 15 ELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKV-------TRILFPLIIAEEHPINL 67
+ + VR+ + + KV + I+ +
Sbjct: 159 SAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDS 218
Query: 68 VAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVL 127
V + + + P E +MP L QA E++ VR L K G +
Sbjct: 219 VRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEIT 278
Query: 128 SPYINKLSGAKLKLLQLYIKRSQTHSSSVPTSLSIRSLERVCSVL 172
L+ + + + V + + ++ C L
Sbjct: 279 KT----------DLVPAFQNLMKDCEAEVRAA-ASHKVKEFCENL 312
Score = 35.0 bits (80), Expect = 0.011
Identities = 22/130 (16%), Positives = 43/130 (33%), Gaps = 11/130 (8%)
Query: 13 PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYK----------VTRILFPLIIAEE 62
P E +MP L QA E++ VR L K + L+ E
Sbjct: 235 PQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCE 294
Query: 63 HPINLVAIKMLTKVIEQNGKGPVE-LFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKE 121
+ A + + E E + + I+P + + + + V+ ++ L
Sbjct: 295 AEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPI 354
Query: 122 FGESVLSPYI 131
G+ ++
Sbjct: 355 LGKDNTIEHL 364
Score = 33.1 bits (75), Expect = 0.041
Identities = 17/142 (11%), Positives = 51/142 (35%), Gaps = 14/142 (9%)
Query: 13 PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKV-------TRILFPLIIAEEHP- 64
++ I+P ++ VR +V V + ++ ++ L A E
Sbjct: 196 ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKS 255
Query: 65 --INLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEF 122
+ + T++ + G E+ +++PA ++ ++ VR + + +
Sbjct: 256 WRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 312
Query: 123 GESVL-SPYINKLSGAKLKLLQ 143
+ ++++ +L+
Sbjct: 313 SADCRENVIMSQILPCIKELVS 334
Score = 32.3 bits (73), Expect = 0.081
Identities = 14/131 (10%), Positives = 37/131 (28%), Gaps = 10/131 (7%)
Query: 15 ELFLPNIMPALLQAYENQDSCVRKCSVFCMVAL------YKVTRILFPLIIAEEHPINLV 68
++ ++P L +++ VR +V + A+ + PL+
Sbjct: 82 PEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFT 141
Query: 69 AIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFG----E 124
+ + + + VR+ + + K +
Sbjct: 142 SRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVK 201
Query: 125 SVLSPYINKLS 135
S + P + L+
Sbjct: 202 SEIIPMFSNLA 212
Score = 29.2 bits (65), Expect = 0.75
Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 12/121 (9%)
Query: 23 PALLQAYENQDSCVRKCSVFCMVALYK------VTRILFPLI---IAEEHPINLVAIKML 73
L+ N+D +R S+ + + L P + I +E + L + L
Sbjct: 13 AVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQL 72
Query: 74 TKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINK 133
G ++ ++P L +++ VR +V + A+ E S L +
Sbjct: 73 GTFTTLVGG---PEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVP 129
Query: 134 L 134
L
Sbjct: 130 L 130
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule,
XMAP215, STU2, DIS1, microtubule associated protein,
structural protein; 1.90A {Caenorhabditis elegans}
Length = 266
Score = 44.8 bits (105), Expect = 3e-06
Identities = 22/135 (16%), Positives = 51/135 (37%), Gaps = 9/135 (6%)
Query: 21 IMPALLQAYENQDSCVRKCSVFCMVALYKVT---RILFPLIIAEEHPINLV---AIKMLT 74
+P LL +R + L V ++ L+ A + + ++
Sbjct: 133 FVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIE 192
Query: 75 KVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKL 134
I G P++ ++ + ++D VR ++ +VA +K G+ + ++
Sbjct: 193 YYITNAGISPLKS--LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMW-KAAGRM 249
Query: 135 SGAKLKLLQLYIKRS 149
+ L++ IKR+
Sbjct: 250 ADKDKSLVEERIKRT 264
Score = 25.9 bits (56), Expect = 7.1
Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 1 MLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYK 49
++ I G P++ ++ + ++D VR ++ +VA +K
Sbjct: 190 VIEYYITNAGISPLKS--LSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton,
microtubule, tubul domain, hydrolase; HET: GTP; 2.88A
{Saccharomyces cerevisiae}
Length = 278
Score = 40.9 bits (95), Expect = 7e-05
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 69 AIKMLTKVIEQNG--KGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES- 125
A + +++ G V+ FLP ++ + Q + D VR ++ +V +YK G +
Sbjct: 159 AANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNS 218
Query: 126 --VLSPYINKLSGAKLKLLQ 143
+ KL ++K L
Sbjct: 219 DLLEEILFKKLKPIQVKDLH 238
Score = 32.0 bits (72), Expect = 0.079
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 2 LTKVIEQNG--KGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVT----RILF 55
+ +++ G V+ FLP ++ + Q + D VR ++ +V +YKVT +L
Sbjct: 163 VYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLE 222
Query: 56 PLIIAEEHPINLVAIKMLTKVIEQNGKGP 84
++ + PI + K L K+ + G P
Sbjct: 223 EILFKKLKPIQV---KDLHKLFAKVGDEP 248
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 37.5 bits (86), Expect = 0.001
Identities = 24/192 (12%), Positives = 69/192 (35%), Gaps = 27/192 (14%)
Query: 2 LTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTRILFPLIIAE 61
+++ K ++ +P++L +Q V++ + +C + ++ + I +
Sbjct: 393 FGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWC---IGRIADSVAESIDPQ 449
Query: 62 EHPINLV-------------------AIKMLTKVIEQNGKGPVELFLPNIMPALLQAYEN 102
+H +V I L + + + P+ F P ++ L+ A
Sbjct: 450 QHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANR 509
Query: 103 QDSCVR-KCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSSSVPTSLS 161
D+ + S F + E+ ++ + + + ++ + + T
Sbjct: 510 IDNEFNARASAFSALTTMVEYATDTVAETSASI----STFVMDKLGQTMSVDENQLTLED 565
Query: 162 IRSLERVCSVLI 173
+SL+ + S ++
Sbjct: 566 AQSLQELQSNIL 577
Score = 28.6 bits (63), Expect = 1.2
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 67 LVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESV 126
AI L + + E +L P LL+A DS V +V + + E
Sbjct: 619 FYAISALAASLGKG----FEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDF 674
Query: 127 LSPYINKLSGAKLKLLQ 143
Y + + +++
Sbjct: 675 -RRYSDAMMNVLAQMIS 690
Score = 28.2 bits (62), Expect = 1.7
Identities = 9/87 (10%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Query: 49 KVTRILFPLIIA----EEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQD 104
+ + + + A+ +++ K ++ +P++L +Q
Sbjct: 365 HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQS 424
Query: 105 SCVRKCSVFCMVALYKEFGESVLSPYI 131
V++ + +C+ + ES+
Sbjct: 425 LQVKETTAWCIGRIADSVAESIDPQQH 451
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 35.1 bits (80), Expect = 0.006
Identities = 14/125 (11%), Positives = 47/125 (37%), Gaps = 15/125 (12%)
Query: 19 PNIMPALLQAYENQDSCVRKCSVFCMVALYK--------VTRILFPLIIAEEHP-INLVA 69
+++ L++ ++ V K ++ ++ + K + + LF L+ E +
Sbjct: 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEI 90
Query: 70 IKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSP 129
K ++ ++ + + +++P L Y D + + + + K +++
Sbjct: 91 AKAFGQMAKEKPEL-----VKSMIPVLFANYRIGDEKTKINVSYALEEIAKA-NPMLMAS 144
Query: 130 YINKL 134
+
Sbjct: 145 IVRDF 149
Score = 34.7 bits (79), Expect = 0.009
Identities = 21/134 (15%), Positives = 52/134 (38%), Gaps = 19/134 (14%)
Query: 18 LPNIMPALLQAYENQDSCVRKCSVFCMVALYK--------VTRILFPLIIAEEHPINLVA 69
+ +++P L Y D + + + + K + R ++ ++ L A
Sbjct: 105 VKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTA 164
Query: 70 IKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSP 129
+ + + E + K ++ +P ++ + D VR +V +V L + L+
Sbjct: 165 LNFIEAMGENSFK-----YVNPFLPRIINLLHDGDEIVRASAVEALVHL------ATLND 213
Query: 130 YINKLSGAKLKLLQ 143
+ K+ +L+ L
Sbjct: 214 KLRKVVIKRLEELN 227
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.007
Identities = 26/164 (15%), Positives = 50/164 (30%), Gaps = 54/164 (32%)
Query: 55 FPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELF---------LPNIMPALLQA------ 99
PLI ++ + + G P EL ++ A+ A
Sbjct: 238 CPLI-------GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 100 --YENQDSCVR-------KC-SVFCMVAL-------YKEFGESVLSPYINKLSGAKLKLL 142
+ + + +C + +L E E V SP ++ +S + +
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS-ISNLTQEQV 349
Query: 143 QLYIKRSQTH---SSSVPTSL-----------SIRSLERVCSVL 172
Q Y+ ++ +H V SL +SL + L
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 34.0 bits (77), Expect = 0.020
Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 30 ENQDSCVRKCSVFCMVALY-----KVTRILFPLI---IAEEHPINLVAIKMLTKVIEQNG 81
D +RKCS + L ++ + PL+ + + + ++ I +
Sbjct: 331 TISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGC 390
Query: 82 KGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKL 141
+ +LP ++P L+Q ++ + VR + + + Y+ L LK
Sbjct: 391 MQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKR 450
Query: 142 LQLYIKRSQTHS 153
+ KR Q +
Sbjct: 451 ILDSNKRVQEAA 462
Score = 34.0 bits (77), Expect = 0.021
Identities = 18/147 (12%), Positives = 41/147 (27%), Gaps = 20/147 (13%)
Query: 1 MLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTRILFPLIIA 60
++ I + + +LP ++P L+Q ++ + VR L + +
Sbjct: 381 LVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSI---TCWTLSRYAHWVVSQPPD 437
Query: 61 EEHPINLV----------------AIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQD 104
+ A + E+ + +L I+ L+ A+
Sbjct: 438 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT-ELVPYLAYILDTLVFAFSKYQ 496
Query: 105 SCVRKCSVFCMVALYKEFGESVLSPYI 131
+ L G + P
Sbjct: 497 HKNLLILYDAIGTLADSVGHHLNKPEY 523
Score = 32.5 bits (73), Expect = 0.069
Identities = 22/146 (15%), Positives = 55/146 (37%), Gaps = 13/146 (8%)
Query: 18 LPNIMPALLQAYENQDSCVRKCSVFCMVA------------LYKVTRILFPLIIAEEHPI 65
LP+I+P L + + + V++ + + A L ++ L + ++ +
Sbjct: 357 LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALV 416
Query: 66 NLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES 125
+ L++ P + +L +M LL+ + + V++ + L E +
Sbjct: 417 RSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLE-EEACT 475
Query: 126 VLSPYINKLSGAKLKLLQLYIKRSQT 151
L PY+ + + Y ++
Sbjct: 476 ELVPYLAYILDTLVFAFSKYQHKNLL 501
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 33.5 bits (75), Expect = 0.027
Identities = 18/147 (12%), Positives = 51/147 (34%), Gaps = 14/147 (9%)
Query: 2 LTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYK---------VTR 52
L ++++ + ++ +L+ E+++ V+ +V C+ L +
Sbjct: 30 LMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVD 89
Query: 53 ILFPLIIAEEHPINLVAIKMLTKVIEQ-----NGKGPVELFLPNIMPALLQAYENQDSCV 107
L +++++ + ++ L VI + +G I L A Q+
Sbjct: 90 TLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVS 149
Query: 108 RKCSVFCMVALYKEFGESVLSPYINKL 134
+ ++A +L + +
Sbjct: 150 VQLEALDIMADMLSRQGGLLVNFHPSI 176
Score = 32.4 bits (72), Expect = 0.069
Identities = 17/133 (12%), Positives = 42/133 (31%), Gaps = 8/133 (6%)
Query: 17 FLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTRILFPLIIAEEHPINLVAIK----M 72
+L I+P +++ D +R+ + + + ++ I L +
Sbjct: 252 YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNY 311
Query: 73 LTKVIEQNGKGPVELFLPNIMPALLQAYENQDSC---VRKCSVFCMVALYKEFGESVLSP 129
+++ + Y + D VR+ + C+ A+ E L
Sbjct: 312 NYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM-LPE 370
Query: 130 YINKLSGAKLKLL 142
+ +S A +
Sbjct: 371 FYKTVSPALISRF 383
Score = 32.0 bits (71), Expect = 0.12
Identities = 22/179 (12%), Positives = 58/179 (32%), Gaps = 32/179 (17%)
Query: 14 VELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTRI-------------------- 53
+ F + PAL+ ++ ++ V+ ++L K TR
Sbjct: 368 LPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTM 427
Query: 54 ---LFPLII-------AEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQ 103
P I+ E+ + + G + +P ++P ++ + ++
Sbjct: 428 LQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDK 487
Query: 104 DSC--VRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSSSVPTSL 160
S ++ ++ C+ + V P++ L + + + + + V L
Sbjct: 488 SSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQL 546
Score = 29.7 bits (65), Expect = 0.55
Identities = 10/66 (15%), Positives = 29/66 (43%)
Query: 69 AIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLS 128
A L ++++ + ++ +L+ E+++ V+ +V C+ L + E +
Sbjct: 26 ATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVE 85
Query: 129 PYINKL 134
++ L
Sbjct: 86 TIVDTL 91
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.049
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 9/32 (28%)
Query: 69 AIKMLTKVIEQNGKGPVELFLPNIMPAL-LQA 99
A+K L + ++L+ + PAL ++A
Sbjct: 21 ALKKL--------QASLKLYADDSAPALAIKA 44
Score = 29.5 bits (65), Expect = 0.35
Identities = 6/26 (23%), Positives = 14/26 (53%), Gaps = 5/26 (19%)
Query: 4 KVIEQNGKGPVELFLPNIMPAL-LQA 28
K ++ ++L+ + PAL ++A
Sbjct: 23 KKLQ----ASLKLYADDSAPALAIKA 44
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 32.7 bits (74), Expect = 0.059
Identities = 20/153 (13%), Positives = 58/153 (37%), Gaps = 15/153 (9%)
Query: 1 MLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKV-----TRILF 55
+ + N VE ++ ++PA+ N+D ++ + ++++ + L
Sbjct: 76 VAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALL 135
Query: 56 PLIIAEEHPIN-----LVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKC 110
P + N + + + +++ V L +P ++P L + + V+
Sbjct: 136 PHLTNAIVETNKWQEKIAILAAFSAMVDAAKD-QVALRMPELIPVLSETMWDTKKEVKAA 194
Query: 111 SVFCMVALYKEFGESVLSPYINKLSGAKLKLLQ 143
+ M + E+V + I + + ++ +
Sbjct: 195 ATAAM----TKATETVDNKDIERFIPSLIQCIA 223
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 30.0 bits (68), Expect = 0.30
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 19/96 (19%)
Query: 19 PNIMPALLQAYENQDSCVRKCSVFCMVALYKV--TRILFPLIIAEEHPINLV---AIKML 73
+ L++A +++D VR+ VAL ++ R + PLI A + V A L
Sbjct: 80 ERAVEPLIKALKDEDGWVRQ---SAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFAL 136
Query: 74 TKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRK 109
++ G + L++A +++D VR+
Sbjct: 137 GEI------GD-----ERAVEPLIKALKDEDGWVRQ 161
Score = 29.3 bits (66), Expect = 0.61
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 19/96 (19%)
Query: 19 PNIMPALLQAYENQDSCVRKCSVFCMVALYKV--TRILFPLIIAEEHPINLV---AIKML 73
+ L++A +++D VR + AL ++ R + PLI A + V A L
Sbjct: 111 ERAVEPLIKALKDEDWFVR---IAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADAL 167
Query: 74 TKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRK 109
++ G + A+ + E RK
Sbjct: 168 GEI------GG-----ERVRAAMEKLAETGTGFARK 192
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 30.1 bits (68), Expect = 0.38
Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 65 INLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGE 124
I +A++ + + + L + +++D VRK + C+ L+ +
Sbjct: 102 IRALAVRTMGCIRVDK-------ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ 154
Query: 125 SV 126
V
Sbjct: 155 MV 156
Score = 29.3 bits (66), Expect = 0.78
Identities = 14/102 (13%), Positives = 37/102 (36%), Gaps = 18/102 (17%)
Query: 17 FLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTRILFPLIIAEEHPINLV-------- 68
+ L + +++D VRK + C+ L+ + ++ ++ ++ +
Sbjct: 118 ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHD----INAQMVEDQGFLDSLRDLIADSN 173
Query: 69 ------AIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQD 104
A+ L+++ E + + P + LL A
Sbjct: 174 PMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECT 215
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 29.8 bits (66), Expect = 0.53
Identities = 26/171 (15%), Positives = 60/171 (35%), Gaps = 18/171 (10%)
Query: 18 LPNIMPALLQAYENQD-------SCVRKCSVFCMVALY-----KVTRILFPLIIA----E 61
L ++P L Q QD K + C++ L + + P I
Sbjct: 319 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP 378
Query: 62 EHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKE 121
+ A+ ++E ++ + MP L++ ++ VR + + + + +
Sbjct: 379 DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438
Query: 122 FGESVLSP-YINKLSGAKLKLLQLYIKRSQTHSSSVPTSLSIRSLERVCSV 171
E+ ++ Y+ L ++ L R ++ +SL+ + E
Sbjct: 439 LPEAAINDVYLAPLLQCLIEGLS-AEPRVASNVCWAFSSLAEAAYEAADVA 488
Score = 29.4 bits (65), Expect = 0.66
Identities = 25/203 (12%), Positives = 60/203 (29%), Gaps = 34/203 (16%)
Query: 2 LTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTRILFPLIIAE 61
++E ++ + MP L++ ++ VR + + + ++ +L I +
Sbjct: 390 FGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWT---VGRICELLPEAAIND 446
Query: 62 EHPINLV-------------------AIKMLTKV----------IEQNGKGPVELFLPNI 92
+ L+ A L + E+ + I
Sbjct: 447 VYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELI 506
Query: 93 MPALLQAYENQDSCVRKCSVFCMVALYKEFGESV--LSPYINKLSGAKLKLLQLYIKRSQ 150
+ LL+ + D +L + S P + K + ++ LQ ++
Sbjct: 507 VQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMES 566
Query: 151 THSSSVPTSLSIRSLERVCSVLI 173
S+ +C+ L
Sbjct: 567 HIQSTSDRIQFNDLQSLLCATLQ 589
Score = 27.1 bits (59), Expect = 4.2
Identities = 8/56 (14%), Positives = 20/56 (35%)
Query: 88 FLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQ 143
++ P L +N + +V +S + P+ +++ L+ L
Sbjct: 646 YMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLG 701
Score = 26.4 bits (57), Expect = 7.8
Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 20/137 (14%)
Query: 17 FLPNIMPALLQAYENQDSC-VRKCSVFCMVALYK------------VTRILFPLIIAEEH 63
++ P L +N V +V + L + V ++L + E
Sbjct: 646 YMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENV 705
Query: 64 PINL--VAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKE 121
++ + + + G + +L ++ L QA + Q S + MV E
Sbjct: 706 HRSVKPQILSVFGDIALAIGGE-FKKYLEVVLNTLQQASQAQVD----KSDYDMVDYLNE 760
Query: 122 FGESVLSPYINKLSGAK 138
ES L Y + G K
Sbjct: 761 LRESCLEAYTGIVQGLK 777
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 28.8 bits (65), Expect = 0.62
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 19/96 (19%)
Query: 19 PNIMPALLQAYENQDSCVRKCSVFCMVALYKV--TRILFPLIIAEEHPINLV---AIKML 73
+ L++A +++D VR + AL ++ R + PLI A + V A L
Sbjct: 106 ERAVEPLIKALKDEDWFVR---IAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADAL 162
Query: 74 TKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRK 109
++ G + A+ + E RK
Sbjct: 163 GEI------GG-----ERVRAAMEKLAETGTGFARK 187
Score = 28.8 bits (65), Expect = 0.81
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 19/96 (19%)
Query: 19 PNIMPALLQAYENQDSCVRKCSVFCMVALYKV--TRILFPLIIAEEHPINLV---AIKML 73
+ L++A +++D VR+ VAL ++ R + PLI A + V A L
Sbjct: 75 ERAVEPLIKALKDEDGWVRQ---SAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFAL 131
Query: 74 TKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRK 109
++ G + L++A +++D VR+
Sbjct: 132 GEI------GDER-----AVEPLIKALKDEDGWVRQ 156
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 28.6 bits (63), Expect = 1.2
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 69 AIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRK---------CSVFCMVALY 119
A+ ++E ++ + MP L++ ++ VR C + A+
Sbjct: 386 AVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIN 445
Query: 120 KEFGESVLSPYINKLS 135
+ +L I LS
Sbjct: 446 DVYLAPLLQCLIEGLS 461
Score = 26.3 bits (57), Expect = 5.9
Identities = 12/83 (14%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Query: 61 EEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYK 120
++ A L + +P+++P + + +N D R +V + +
Sbjct: 340 DDWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE 395
Query: 121 EFGESVLSPYINKLSGAKLKLLQ 143
S L P + + ++L++
Sbjct: 396 GPEPSQLKPLVIQAMPTLIELMK 418
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 26.9 bits (60), Expect = 2.0
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 22/101 (21%)
Query: 23 PALLQAYENQDSCVRKCSVFCMVAL--YKVTRILFPLIIAEEHPINLV---AIKMLTKVI 77
LL++ N+D +R + + + ++ R + PLI E V A + L ++
Sbjct: 45 EPLLESLSNEDWRIRGAAAW---IIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQI- 100
Query: 78 EQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVAL 118
G + A+ + E RK + L
Sbjct: 101 -----GG-----ERVRAAMEKLAETGTGFARKV---AVNYL 128
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal
5'-phosphate, arginine metabolism, lysine biosynthesis,
gabaculine; HET: PLP; 1.91A {Salmonella typhimurium}
PDB: 2pb0_A*
Length = 420
Score = 27.1 bits (61), Expect = 3.0
Identities = 5/31 (16%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 49 KVTRILFPLIIAEEHPINLVAIKMLTKVIEQ 79
V R L++ E I+ ++ + + +
Sbjct: 389 DVMRFAPSLVVEEAD-IHE-GMQRFAQAVGK 417
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
genomics, center for structural genomics O infectious
diseases; 1.80A {Campylobacter jejuni subsp}
Length = 395
Score = 27.1 bits (61), Expect = 3.6
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 49 KVTRILFPLIIAEEHPINLVAIKMLTKVIEQ 79
R L PLI+ +EH I+ + L K ++
Sbjct: 366 NDLRFLPPLILQKEH-IDE-MSEKLRKALKS 394
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine
aminotransferase (EC 2.6.1.11) (ACOA structural
genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8}
PDB: 2e54_A*
Length = 397
Score = 26.3 bits (59), Expect = 5.3
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 49 KVTRILFPLIIAEEHPINLVAIKMLTKVIEQ 79
R L PL + I+L A++ L KV++
Sbjct: 368 NTIRFLPPLTVEYGE-IDL-AVETLKKVLQG 396
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop,
transcription, protein binding; 2.40A {Drosophila
melanogaster}
Length = 257
Score = 26.2 bits (57), Expect = 5.5
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 54 LFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVF 113
+++ H N+ K + +EQ K VEL LP+++ + + + V K +
Sbjct: 54 FLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVEL-LPHVINVVSMLLRDNSAQVIKRVIQ 112
Query: 114 CMVALYK 120
++YK
Sbjct: 113 ACGSIYK 119
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent
ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens}
SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A*
2can_A*
Length = 439
Score = 26.4 bits (59), Expect = 6.0
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 25 LLQAYENQDSCVRKCSVFCMVA-----LYKVT-----RILFPLIIAEEHPINLVAIKMLT 74
LL A +++ C+ L K T R PL+I E+ + +I+++
Sbjct: 376 LLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDE-LRE-SIEIIN 433
Query: 75 KVIEQ 79
K I
Sbjct: 434 KTILS 438
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 26.4 bits (59), Expect = 6.1
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 49 KVTRILFPLIIAEEHPINLVAIKMLTKVIEQ 79
R PL ++ I+ AI + +
Sbjct: 419 DTVRFRPPLTVSTAE-IDA-AIAAVRSALPV 447
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas
palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Length = 458
Score = 26.1 bits (58), Expect = 7.2
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 64 PINLVAIKMLTKVI--EQNGKGPVELFLPNIMPALL 97
P+ +K + +++ EQN G +EL +P + A L
Sbjct: 64 PLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADL 99
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics,
NPPSFA, national project on prote structural and
functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Length = 375
Score = 25.9 bits (58), Expect = 9.2
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 49 KVTRILFPLIIAEEHPINLVAIKMLTKVI 77
KV R L PLII +EH I+ AI +L +++
Sbjct: 349 KVLRFLPPLIIQKEH-IDR-AISVLREIL 375
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center
for structural genomics, JCSG; HET: MSE ADP; 2.20A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 410
Score = 25.8 bits (56), Expect = 9.7
Identities = 10/86 (11%), Positives = 27/86 (31%)
Query: 63 HPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEF 122
H ++ +ML + + + + PAL N + + + + +
Sbjct: 225 HKTSVAYERMLISTLLRAKELASQGVELFASPALHFFLYNDINHTEFHNNPDCLENFIQL 284
Query: 123 GESVLSPYINKLSGAKLKLLQLYIKR 148
++ + + S K+L
Sbjct: 285 DDNDIWTALKVWSNHPDKVLSTLSLG 310
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.393
Gapped
Lambda K H
0.267 0.0509 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,436,168
Number of extensions: 131570
Number of successful extensions: 285
Number of sequences better than 10.0: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 71
Length of query: 176
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 89
Effective length of database: 4,272,666
Effective search space: 380267274
Effective search space used: 380267274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.1 bits)