RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6156
(176 letters)
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1
(Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 38.2 bits (87), Expect = 4e-04
Identities = 21/138 (15%), Positives = 51/138 (36%), Gaps = 7/138 (5%)
Query: 2 LTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTR-----ILFP 56
L ++I ++ ++ NI LL+ E + R C+ L + L
Sbjct: 910 LKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKG 969
Query: 57 LIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMV 116
+I+ + + I + + P++ L N + L+ E+ D VR+ ++
Sbjct: 970 YLISGSSYARSSVVTAVKFTISDHPQ-PIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFN 1028
Query: 117 ALYKEFGESVLSPYINKL 134
+ ++ ++ +
Sbjct: 1029 SAAHNKPS-LIRDLLDTV 1045
Score = 33.9 bits (76), Expect = 0.007
Identities = 23/157 (14%), Positives = 56/157 (35%), Gaps = 16/157 (10%)
Query: 2 LTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTR--------- 52
L ++++ + ++ +L+ E+++ V+ +V C+ L +
Sbjct: 27 LMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVD 86
Query: 53 ILFPLIIAEEHPINLVAIKMLTKVIEQ-----NGKGPVELFLPNIMPALLQAYENQ-DSC 106
L +++++ + ++ L VI + +G I L A Q D
Sbjct: 87 TLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVS 146
Query: 107 VRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQ 143
V+ ++ M + G +L + + L L
Sbjct: 147 VQLEALDIMADMLSRQG-GLLVNFHPSILTCLLPQLT 182
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 36.3 bits (82), Expect = 0.001
Identities = 15/132 (11%), Positives = 45/132 (34%), Gaps = 13/132 (9%)
Query: 13 PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYK------VTRILFPLIIA----EE 62
VE F + + + +R+ + + L + + P ++A
Sbjct: 434 GVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPN 493
Query: 63 HPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEF 122
+ + + + + E G+ ++ +++P +L+ + + VR + +
Sbjct: 494 YLHRMTTLFCINVLSEVCGQ---DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPIL 550
Query: 123 GESVLSPYINKL 134
S L + +
Sbjct: 551 DNSTLQSEVKPI 562
Score = 35.2 bits (79), Expect = 0.003
Identities = 12/121 (9%), Positives = 32/121 (26%), Gaps = 6/121 (4%)
Query: 17 FLPNIMPALLQAYENQDSCVRKCSVFCMVAL------YKVTRILFPLIIAEEHPINLVAI 70
++ ++P L +++ VR +V + A+ + PL+ +
Sbjct: 84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSR 143
Query: 71 KMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPY 130
+ + + VR+ + + K +
Sbjct: 144 TSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE 203
Query: 131 I 131
I
Sbjct: 204 I 204
Score = 27.1 bits (58), Expect = 1.5
Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 12/119 (10%)
Query: 25 LLQAYENQDSCVRKCSV--FCMVALY----KVTRILFPLI---IAEEHPINLVAIKMLTK 75
L+ N+D +R S+ +AL + L P + I +E + L + L
Sbjct: 15 LIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGT 74
Query: 76 VIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKL 134
G ++ ++P L +++ VR +V + A+ E S L + L
Sbjct: 75 FTTLVGG---PEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 130
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 458
Score = 33.6 bits (75), Expect = 0.010
Identities = 18/132 (13%), Positives = 41/132 (31%), Gaps = 16/132 (12%)
Query: 14 VELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTRILFPLIIAEEHPINL------ 67
+ L ++P L Q QD A +L + P L
Sbjct: 314 AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEH 373
Query: 68 ----------VAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVA 117
A+ ++E ++ + MP L++ ++ VR + + +
Sbjct: 374 IKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGR 433
Query: 118 LYKEFGESVLSP 129
+ + E+ ++
Sbjct: 434 ICELLPEAAIND 445
Score = 26.7 bits (57), Expect = 1.6
Identities = 6/44 (13%), Positives = 18/44 (40%)
Query: 1 MLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCM 44
++E ++ + MP L++ ++ VR + + +
Sbjct: 388 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTV 431
>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase
{Pseudomonas cepacia [TaxId: 292]}
Length = 431
Score = 27.3 bits (59), Expect = 0.97
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 41 VFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQ 79
+ + + V RI PL ++E+ I+L + +L + IE+
Sbjct: 393 IVQLPGMGGVFRIAPPLTVSEDE-IDL-GLSLLGQAIER 429
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 26.3 bits (57), Expect = 2.5
Identities = 21/173 (12%), Positives = 59/173 (34%), Gaps = 14/173 (8%)
Query: 14 VELFLPNIMPALLQAYENQDS--CVRKCSVFCMVALYKVTRILFP----------LIIAE 61
+ + D+ V++ + C++ LY+ + L P L+ +
Sbjct: 132 SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQ 191
Query: 62 EHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKE 121
+ A ++T + ++N + + + + L + + + ++ + + + A +
Sbjct: 192 HLGVVTAATSLITTLAQKNPE-EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLS 250
Query: 122 FGE-SVLSPYINKLSGAKLKLLQLYIKRSQTHSSSVPTSLSIRSLERVCSVLI 173
+L Y A L ++ + P S ++ +VL
Sbjct: 251 VKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLF 303
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 861
Score = 26.3 bits (56), Expect = 2.5
Identities = 11/121 (9%), Positives = 36/121 (29%), Gaps = 20/121 (16%)
Query: 17 FLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKV 76
+L +IM + A + ++ + + + + I+A
Sbjct: 720 YLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVA---------------- 763
Query: 77 IEQNGKGPVELFLPNIMPALLQAYENQDSC----VRKCSVFCMVALYKEFGESVLSPYIN 132
+ + ++ I + Q E+ + +V + + F + + +
Sbjct: 764 GLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYG 823
Query: 133 K 133
+
Sbjct: 824 Q 824
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 25.9 bits (56), Expect = 3.6
Identities = 7/38 (18%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 41 VFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIE 78
+ K R+ PL I +E ++ +++ K ++
Sbjct: 366 LITRDVHDKTIRLTPPLCITKEQ-LDE-CTEIIVKTVK 401
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 25.6 bits (55), Expect = 4.6
Identities = 8/30 (26%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 50 VTRILFPLIIAEEHPINLVAIKMLTKVIEQ 79
V RIL PL I + I ++++++ ++
Sbjct: 395 VLRILVPLTIEDAQ-IRQ-GLEIISQCFDE 422
>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
Length = 461
Score = 25.4 bits (54), Expect = 5.0
Identities = 5/30 (16%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 49 KVTRILFPLIIAEEHPINLVAIKMLTKVIE 78
K R L+ + H +L + + + ++
Sbjct: 432 KSIRFRPTLVFRDHH-AHL-FLNIFSDILA 459
>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 104
Score = 24.2 bits (52), Expect = 6.8
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 142 LQLYIKRSQTHSSSVPTSLSIRSLERVCS 170
+QL IKR+ HS+ I + C
Sbjct: 3 VQLNIKRNSKHSAWTGELFKIECPVKYCV 31
>d2z0da1 d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human (Homo
sapiens) [TaxId: 9606]}
Length = 350
Score = 24.2 bits (52), Expect = 9.4
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 70 IKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVA 117
I + ++ GK + + PN + +L+ D+ S+ +A
Sbjct: 121 IHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTW---SSLAVHIA 165
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.393
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 593,265
Number of extensions: 25408
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 22
Length of query: 176
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,322,926
Effective search space: 128323822
Effective search space used: 128323822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.4 bits)