Query psy6159
Match_columns 101
No_of_seqs 115 out of 121
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 19:09:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f5f_A Maltose-binding peripla 99.4 7.7E-14 2.6E-18 115.0 2.7 96 1-101 544-646 (658)
2 2w56_A VC0508; unknown functio 14.5 1.4E+02 0.0047 21.2 3.1 38 57-94 10-49 (147)
3 3r8s_2 50S ribosomal protein L 14.2 43 0.0015 20.0 0.3 10 77-86 1-10 (46)
4 3v2d_7 50S ribosomal protein L 13.0 49 0.0017 20.0 0.3 10 77-86 1-10 (49)
5 2xcm_C SGT1-like protein, cyto 9.7 1.4E+02 0.0047 17.8 1.6 21 72-92 23-43 (92)
6 1n6j_G Calcineurin-binding pro 9.2 1.8E+02 0.0061 16.3 1.8 12 59-70 8-19 (35)
7 2v1l_A Hypothetical protein; p 8.1 1.4E+02 0.0047 21.2 1.2 38 57-94 10-49 (148)
8 4g4k_A Accessory gene regulato 7.5 53 0.0018 20.3 -1.1 17 16-32 47-63 (103)
9 3u9w_A Leukotriene A-4 hydrola 7.4 2.7E+02 0.0091 22.8 2.8 23 18-40 386-410 (608)
10 1hf2_A MINC, septum site-deter 7.4 1.8E+02 0.006 21.0 1.6 21 15-35 20-43 (210)
No 1
>3f5f_A Maltose-binding periplasmic protein, heparan sulfate 2-O-sulfotransferase 1; maltose binding protein, fusion, heparan sulfate biosynthesis; HET: GLC A3P; 2.65A {Escherichia coli k-12}
Probab=99.39 E-value=7.7e-14 Score=114.97 Aligned_cols=96 Identities=17% Similarity=0.214 Sum_probs=68.2
Q ss_pred CcccceeeEEeeehhhhHHHHHHHHhhchhhhhHHHHHhcccccccccccccccCCCCCCCHHHHHHHHhC--CCccccc
Q psy6159 1 MAVEKHYAVVGLLEDLNVTLTVMENYIPRFFAHASQIYNEGRLDRWIGERQPFREQTLSVEDKIRQERESN--PRPSAYK 78 (101)
Q Consensus 1 ~NVe~~Y~vVGilEeln~tL~VLE~~lPrfFkGA~~~Y~~~~~~~~~~tkn~~Kp~~~~~Seev~~~lr~n--~t~E~~~ 78 (101)
+||+++|+|||+||++++||.+||+++|+||+||.++|.....+..+.++ . +. +++++.++.++++ ...+.-=
T Consensus 544 ~nl~~~~~~vG~~E~~~~sl~lle~~~~~~f~~~~~~~~~~~~~~~~~~~-~-~~---~~~~~~~~~~~~~~~~~~D~~l 618 (658)
T 3f5f_A 544 YNLINEYFLVGVTEELEDFIMLLEAALPRFFRGATELYRTGKKSHLRKTT-E-KK---LPTAATIAKLQQSEIWKMENEF 618 (658)
T ss_dssp HHHHHTEEEEEEGGGHHHHHHHHHHHCHHHHTTHHHHHHTCSTTSCSCBS-C-CC---CCCHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHhhhheeehHHhhHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHhhh-c-CC---CCCHHHHHHHHhChHHHHHHHH
Confidence 47899999999999999999999999999999999999887655444433 2 34 5899999999877 3333322
Q ss_pred cc-----cCccceeeeeeeehhhccCCC
Q psy6159 79 AD-----AQPTKLTIGCRLANFILTLPQ 101 (101)
Q Consensus 79 ~~-----~~~~~~~~~~~~~~~~~~~~~ 101 (101)
|| ++=-...+|-.-.+++-.+||
T Consensus 619 Y~~a~~~f~~~~~~~~~~~~~~~~~~~~ 646 (658)
T 3f5f_A 619 YEFALEQFQFVRAHAVREKDGELYILAQ 646 (658)
T ss_dssp HHHHHHHHHHHHHTTEEEETTEEEECCC
T ss_pred HHHHHHHHHHHHHhhccCCCcccccchH
Confidence 22 222233445555555555554
No 2
>2w56_A VC0508; unknown function; 1.90A {Vibrio cholerae} PDB: 2w56_B
Probab=14.47 E-value=1.4e+02 Score=21.15 Aligned_cols=38 Identities=13% Similarity=0.168 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHHhCCCccccccc--cCccceeeeeeeeh
Q psy6159 57 TLSVEDKIRQERESNPRPSAYKAD--AQPTKLTIGCRLAN 94 (101)
Q Consensus 57 ~~~~Seev~~~lr~n~t~E~~~~~--~~~~~~~~~~~~~~ 94 (101)
.||+|++..+.|.+-+..-...-+ .+.+.+||-||=-+
T Consensus 10 ~Lpvs~~l~~lL~~~l~~~~~~~~~~~~~~~ltlNFRD~~ 49 (147)
T 2w56_A 10 SLPVSKKLHKLLSKQLTAHLLSSEALTTSRYLVFNFRDKS 49 (147)
T ss_dssp SSCCCHHHHHHHHTTTHHHHSCSTTTTTCCEEEEEEECTT
T ss_pred cccccHHHHHHHHHHHHhccccccCcccCcEEEEEcCCCC
Confidence 568999999999888765443222 45678999998443
No 3
>3r8s_2 50S ribosomal protein L34; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_2 1vs6_2 2aw4_2 2awb_2 1vt2_2 2i2v_2 2j28_2 2i2t_2* 2qao_2* 2qba_2* 2qbc_2* 2qbe_2 2qbg_2 2qbi_2* 2qbk_2* 2qov_2 2qox_2 2qoz_2* 2qp1_2* 2rdo_2 ...
Probab=14.19 E-value=43 Score=19.98 Aligned_cols=10 Identities=40% Similarity=0.474 Sum_probs=8.0
Q ss_pred cccccCccce
Q psy6159 77 YKADAQPTKL 86 (101)
Q Consensus 77 ~~~~~~~~~~ 86 (101)
||-.|||.++
T Consensus 1 mKrTyQPs~~ 10 (46)
T 3r8s_2 1 MKRTFQPSVL 10 (46)
T ss_dssp CCCSCCCCHH
T ss_pred CCCCCCCCce
Confidence 6778999875
No 4
>3v2d_7 50S ribosomal protein L34; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_Z 2hgj_6 2hgq_6 2hgu_6 1vsa_Z 2j03_7 2jl6_7 2jl8_7 2v47_7 2v49_7 2wdi_7 2wdj_7 2wdl_7 2wdn_7 2wh2_7 2wh4_7 2wrj_7 2wrl_7 2wro_7 2wrr_7 ...
Probab=13.05 E-value=49 Score=20.00 Aligned_cols=10 Identities=30% Similarity=0.338 Sum_probs=8.0
Q ss_pred cccccCccce
Q psy6159 77 YKADAQPTKL 86 (101)
Q Consensus 77 ~~~~~~~~~~ 86 (101)
||-.|||.++
T Consensus 1 MKRTyQPs~~ 10 (49)
T 3v2d_7 1 MKRTWQPNRR 10 (49)
T ss_dssp CCCSCCCCHH
T ss_pred CCCCCCCCce
Confidence 6778999875
No 5
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Probab=9.67 E-value=1.4e+02 Score=17.79 Aligned_cols=21 Identities=10% Similarity=0.001 Sum_probs=17.3
Q ss_pred CCccccccccCccceeeeeee
Q psy6159 72 PRPSAYKADAQPTKLTIGCRL 92 (101)
Q Consensus 72 ~t~E~~~~~~~~~~~~~~~~~ 92 (101)
...+.++.+.+|+.|++++..
T Consensus 23 v~~~~v~v~~~~~~l~v~~~~ 43 (92)
T 2xcm_C 23 IPKQNVNIDFGEQILSVVIEV 43 (92)
T ss_dssp CCGGGEEEEECSSBEEEEECC
T ss_pred CChHHeEEEEECCEEEEEEEc
Confidence 445778899999999999875
No 6
>1n6j_G Calcineurin-binding protein cabin 1; MADS-BOX, protein-DNA complex, histone deacetylases, transcription/DNA complex; 2.20A {Homo sapiens}
Probab=9.22 E-value=1.8e+02 Score=16.26 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=10.3
Q ss_pred CCCHHHHHHHHh
Q psy6159 59 SVEDKIRQERES 70 (101)
Q Consensus 59 ~~Seev~~~lr~ 70 (101)
.+|+|++|.|+.
T Consensus 8 siseetkqklk~ 19 (35)
T 1n6j_G 8 SISEETKQKLKS 19 (35)
T ss_dssp CCCHHHHHHHHH
T ss_pred cccHHHHHHHHH
Confidence 699999999875
No 7
>2v1l_A Hypothetical protein; pathogenicity island, unknown function; 2.13A {Vibrio cholerae}
Probab=8.12 E-value=1.4e+02 Score=21.23 Aligned_cols=38 Identities=11% Similarity=0.108 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHhCCCcccccc--ccCccceeeeeeeeh
Q psy6159 57 TLSVEDKIRQERESNPRPSAYKA--DAQPTKLTIGCRLAN 94 (101)
Q Consensus 57 ~~~~Seev~~~lr~n~t~E~~~~--~~~~~~~~~~~~~~~ 94 (101)
.||+|++..+.|.+-+..-...- ..+.+.+||-||=-+
T Consensus 10 ~Lpvs~~l~~lL~~~l~~~~~~~~~~~~~~~ltlNFRD~~ 49 (148)
T 2v1l_A 10 HLPISKPFHALLANILSEHQAKSEVQATSKEVVMNFRDSS 49 (148)
T ss_dssp SSCCCHHHHHHHHHHHHHHHC---------CEEEEEECTT
T ss_pred cccccHHHHHHHHHHHHhccccccCcccCcEEEEEcCCCC
Confidence 56899998888877664433211 135567888888443
No 8
>4g4k_A Accessory gene regulator protein A; AGRA, response regulator, activator, transcription factor, phosphoprotein, transcription regulation; 1.52A {Staphylococcus aureus} PDB: 3bs1_A
Probab=7.51 E-value=53 Score=20.32 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=12.6
Q ss_pred hhHHHHHHHHhhchhhh
Q psy6159 16 LNVTLTVMENYIPRFFA 32 (101)
Q Consensus 16 ln~tL~VLE~~lPrfFk 32 (101)
+..+|.-+|..+|.||+
T Consensus 47 ~~~~L~~le~~L~~F~r 63 (103)
T 4g4k_A 47 FYGNLKELSQLDDRFFR 63 (103)
T ss_dssp ECCCHHHHHTSCTTEEE
T ss_pred EccCHHHHhhhChhhEE
Confidence 45678888888997543
No 9
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...
Probab=7.45 E-value=2.7e+02 Score=22.83 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=19.2
Q ss_pred HHHHHHHHhh--chhhhhHHHHHhc
Q psy6159 18 VTLTVMENYI--PRFFAHASQIYNE 40 (101)
Q Consensus 18 ~tL~VLE~~l--PrfFkGA~~~Y~~ 40 (101)
.+|..||.+| +.+|++++..|..
T Consensus 386 ~vL~mL~~~lG~~~~F~~~lr~Yl~ 410 (608)
T 3u9w_A 386 ALLFYLEQLLGGPEIFLGFLKAYVE 410 (608)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5799999999 4789888888865
No 10
>1hf2_A MINC, septum site-determining protein MINC; cell division protein, FTSZ, bacterial cell division, beta helix; 2.2A {Thermotoga maritima} SCOP: b.80.3.1 c.102.1.1
Probab=7.41 E-value=1.8e+02 Score=20.96 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHhh---chhhhhHH
Q psy6159 15 DLNVTLTVMENYI---PRFFAHAS 35 (101)
Q Consensus 15 eln~tL~VLE~~l---PrfFkGA~ 35 (101)
++++.+.-|..-+ |.||+|+.
T Consensus 20 ~~~~l~~~L~~kl~~~~~ff~~~~ 43 (210)
T 1hf2_A 20 NLEEVLNAISARITQMGGFFAKGD 43 (210)
T ss_dssp CHHHHHHHHHHHHHHTGGGCCTTC
T ss_pred CHHHHHHHHHHHHHhChhhhcCCc
Confidence 4566666555554 79999985
Done!