RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy616
(1152 letters)
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 495 bits (1277), Expect = e-158
Identities = 149/518 (28%), Positives = 247/518 (47%), Gaps = 63/518 (12%)
Query: 629 SEELIAIIGMSGRFPAARNINEFWKILINNKDVISEIPEKIFDWKL-YYENPIKSSNKIN 687
+ E + I GMSG+ P + N+ EFW LI D++++ WK Y P
Sbjct: 2 TGEEVVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDDR---RWKAGLYGLP-------- 50
Query: 688 SKWYGSIPGIDEFDPLFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQKIGM 747
+ G + + FD FF + P +A MDP+ R LL+ ++ A+ D G P+ + G+
Sbjct: 51 -RRSGKLKDLSRFDASFFGVHPKQAHTMDPQLRLLLEVTYEAIVDGGINPDSLRGTHTGV 109
Query: 748 FVGVEEGSNYQDRLDQV-------NLTSTHNAILSARLAYFMDLKGPVMAINTACSSSLV 800
+VGV GS + L + ++ A+++ RL++F D +GP +A++TACSSSL+
Sbjct: 110 WVGVS-GSETSEALSRDPETLVGYSMVGCQRAMMANRLSFFFDFRGPSIALDTACSSSLM 168
Query: 801 ATHIACQSLRQHECDTAISAGVNLMISPEAYIAMTSAGMLSPDGKCYVFDERANGLVPSE 860
A A Q++ +C AI G+N+++ P + GMLSP+G C FD NG SE
Sbjct: 169 ALQNAYQAIHSGQCPAAIVGGINVLLKPNTSVQFLRLGMLSPEGTCKAFDTAGNGYCRSE 228
Query: 861 AVVAVVLKRLSRALSDGDPIHAIIRGSGINYDG-KTNGITAPNGISQTELIKSVYKKSNL 919
VVAV+L + S A ++A I +G N DG K G+T P+G Q +LI+S+Y+ + +
Sbjct: 229 GVVAVLLTKKSLA----RRVYATILNAGTNTDGFKEQGVTFPSGDIQEQLIRSLYQSAGV 284
Query: 920 NPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQ---KFCAITSNKSNIGHTFAASG 976
PE YI HGTGTK+GDP E+N + + I S KSN+GH ASG
Sbjct: 285 APESFEYIEAHGTGTKVGDPQELNGITR-----ALCATRQEPLLIGSTKSNMGHPEPASG 339
Query: 977 LVSLINLVQSIKYKIIPASLHCEKENNYIILKNSPFYINKSNKKWN-----TVNEKL--- 1028
L +L ++ S+++ + +LH N I V++ L
Sbjct: 340 LAALAKVLLSLEHGLWAPNLHFHSPNPEI-------------PALLDGRLQVVDQPLPVR 386
Query: 1029 -RIGAVSAFGMSGTNAHIVLQEYISTNFKNIKNNTFISSNPYHMVVLSAKTKISLKEKMK 1087
+++FG G+N HI+L+ + ++ S +T ++++ ++
Sbjct: 387 GGNVGINSFGFGGSNVHIILRPNTQP-----PPAPAPHATLPRLLRASGRTPEAVQKLLE 441
Query: 1088 QILLFLRKNNTVCIENFVYTLMQGRHHFQYRCAIIISS 1125
Q L + + + N + + +R ++
Sbjct: 442 QGLRHSQDLAFLSMLNDIAAV--PATAMPFRGYAVLGG 477
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 519 bits (1338), Expect = e-157
Identities = 149/506 (29%), Positives = 244/506 (48%), Gaps = 43/506 (8%)
Query: 631 ELIAIIGMSGRFPAARNINEFWKILINNKDVISEIPEKIFDWKL-YYENPIKSSNKINSK 689
E + I GMSG+ P + N+ EFW LI D+++ WK Y P +
Sbjct: 2 EEVVIAGMSGKLPESENLEEFWANLIGGVDMVTADDR---RWKAGLYGLP---------R 49
Query: 690 WYGSIPGIDEFDPLFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQKIGMFV 749
G + + FD FF + +A MDP+ R LL+ ++ A+ D G P + G++V
Sbjct: 50 RMGKLKDLSRFDASFFGVHSKQANTMDPQLRMLLEVTYEAIVDGGINPASLRGTSTGVWV 109
Query: 750 GVEEGSNYQDRLDQV-------NLTSTHNAILSARLAYFMDLKGPVMAINTACSSSLVAT 802
GV S+ + L + ++ A+++ RL++F D KGP + I+TACSSSL+A
Sbjct: 110 GVS-SSDASEALSRDPETLVGYSMIGCQRAMMANRLSFFFDFKGPSITIDTACSSSLLAL 168
Query: 803 HIACQSLRQHECDTAISAGVNLMISPEAYIAMTSAGMLSPDGKCYVFDERANGLVPSEAV 862
A Q++R EC A+ G+N+++ P + + GMLS DG C FD G +EAV
Sbjct: 169 QSAYQAIRGGECSAAVVGGLNVLLKPNSSLQFMKLGMLSQDGTCRSFDAEGTGYCRAEAV 228
Query: 863 VAVVLKRLSRALSDGDPIHAIIRGSGINYDG-KTNGITAPNGISQTELIKSVYKKSNLNP 921
VAV+L + S A ++A I +G N DG K G+T P+G Q +LI+S+Y + +P
Sbjct: 229 VAVLLTKKSLA----RRVYATILNAGTNTDGSKEQGVTFPSGDVQEQLIRSLYAPAGPDP 284
Query: 922 EDINYIITHGTGTKLGDPVEINALHDVF-KNKTYNQKFCAITSNKSNIGHTFAASGLVSL 980
E + YI HGTGTK+GDP E+N + + + ++ I S KSN+GH ASG+ +L
Sbjct: 285 ESLEYIEAHGTGTKVGDPQELNGIVNALCATR---REPLLIGSTKSNMGHPEPASGVAAL 341
Query: 981 INLVQSIKYKIIPASLHCEKENNYI-ILKNSPFYINKSNKKWNTVNEKLRIGAVSAFGMS 1039
I ++ S+++ + +LH N I L++ + +++FG
Sbjct: 342 IKVLLSLEHGVWAPNLHYHTPNPEIPALQDGRLQVVDRPLPIRG-----GNVGINSFGFG 396
Query: 1040 GTNAHIVLQEYISTNFKNIKNNTFISSNPYHMVVLSAKTKISLKEKMKQILLFLRKNNTV 1099
G+N H++LQ + ++ S +T +++ ++Q L R V
Sbjct: 397 GSNVHVILQPNSRP-----APPPAQHAALPRLLQASGRTLEAVQTLLEQGLRHSRDLAFV 451
Query: 1100 CIENFVYTLMQGRHHFQYRCAIIISS 1125
+ N +R ++
Sbjct: 452 GMLN--EIAAVSPVAMPFRGYAVLGG 475
Score = 84.5 bits (209), Expect = 2e-16
Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 29/173 (16%)
Query: 236 GGTYLITGGTGRLGMLFSDYLINKYSTNLILSGRSKLN----SIIYKKLKKFNNKAIYIQ 291
+Y+ITGG G G+ + +L + + L+L+ RS + + ++ ++ + +
Sbjct: 1884 HKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVST 1943
Query: 292 VDVSDKL---KMISEINSIINNIGPIDGVLHIAG------ISGLTSNILEANYKNFYSVL 342
+ S +I+E +GP+ GV ++A + T + V
Sbjct: 1944 SNASSLDGARSLITEATQ----LGPVGGVFNLAMVLRDAVLENQTPEFFQD-------VS 1992
Query: 343 SSKISGTIALNYALENTILKLQKNKLDFVCYFSSSSAILGDFGSCDYAMGNRF 395
K SGT L+ +L FV FSS S G+ G +Y N
Sbjct: 1993 KPKYSGTANLDRVTREACPELDY----FVI-FSSVSCGRGNAGQANYGFANSA 2040
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase,
module 5, transferase; 2.73A {Saccharopolyspora
erythraea}
Length = 917
Score = 482 bits (1243), Expect = e-154
Identities = 170/517 (32%), Positives = 280/517 (54%), Gaps = 41/517 (7%)
Query: 629 SEELIAIIGMSGRFP-AARNINEFWKILINNKDVISEIPEKIFD--WKLYYENPIKSSNK 685
+ E IAI+GM+ RFP + FW+ + D I+E P D W+ +P
Sbjct: 37 AGEPIAIVGMACRFPGDVDSPESFWEFVSGGGDAIAEAPA---DRGWEP---DP------ 84
Query: 686 INSKWYGSIPGIDEFDPLFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQKI 745
+++ G + +FD FF ISP EA MDP+QR +L+ SW ALE AG+ P +
Sbjct: 85 -DARLGGMLAAAGDFDAGFFGISPREALAMDPQQRIMLEISWEALERAGHDPVSLRGSAT 143
Query: 746 GMFVGVEEGSNYQDRLDQVN-------LTSTHNAILSARLAYFMDLKGPVMAINTACSSS 798
G+F GV +Y R D+ T T +++ S R+AY + L+GP M ++TACSS
Sbjct: 144 GVFTGVG-TVDYGPRPDEAPDEVLGYVGTGTASSVASGRVAYCLGLEGPAMTVDTACSSG 202
Query: 799 LVATHIACQSLRQHECDTAISAGVNLMISPEAYIAMTSAGMLSPDGKCYVFDERANGLVP 858
L A H+A +SLR+ EC A++ GV +M SP A+ S G L+ DG+C F + A+G
Sbjct: 203 LTALHLAMESLRRDECGLALAGGVTVMSSPGAFTEFRSQGGLAADGRCKPFSKAADGFGL 262
Query: 859 SEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAPNGISQTELIKSVYKKSN 918
+E +VL+RLS A +G P+ A++RGS +N DG +NG+TAP+G +Q +I+ + +
Sbjct: 263 AEGAGVLVLQRLSAARREGRPVLAVLRGSAVNQDGASNGLTAPSGPAQQRVIRRALENAG 322
Query: 919 LNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKF-----CAITSNKSNIGHTFA 973
+ D++Y+ HGTGT+LGDP+E++AL TY + I S KSNIGHT A
Sbjct: 323 VRAGDVDYVEAHGTGTRLGDPIEVHALLS-----TYGAERDPDDPLWIGSVKSNIGHTQA 377
Query: 974 ASGLVSLINLVQSIKYKIIPASLHCEKENNYIILKNSPFYINKSNKKWNTVNEKLRIGAV 1033
A+G+ ++ V ++++ +P +LH ++ + I + + W E+ R V
Sbjct: 378 AAGVAGVMKAVLALRHGEMPRTLHFDEPSPQIEWDLGAVSVVSQARSW-PAGERPRRAGV 436
Query: 1034 SAFGMSGTNAHIVLQEYISTNFKNIKNNTFISSNPYHMVVLSAKTKISLKEKMKQILLFL 1093
S+FG+SGTNAH++++E + +VLS + + +++ + ++ L
Sbjct: 437 SSFGISGTNAHVIVEEAPEA-----DEPEPAPDSGPVPLVLSGRDEQAMRAQAGRLADHL 491
Query: 1094 RKNNTVCIENFVYTLMQGRHHFQYRCAIIISSIEEVV 1130
+ + + +TL R +++R A+++ +E +
Sbjct: 492 AREPRNSLRDTGFTLATRRSAWEHR-AVVVGDRDEAL 527
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 479 bits (1235), Expect = e-153
Identities = 170/523 (32%), Positives = 270/523 (51%), Gaps = 41/523 (7%)
Query: 629 SEELIAIIGMSGRFP-AARNINEFWKILINNKDVISEIPEKIFD--W---KLYYENPIKS 682
+ IAI+ M+ R P W++L + +S P D W +L++ +P +
Sbjct: 4 ESDPIAIVSMACRLPGGVNTPQRLWELLREGGETLSGFPT---DRGWDLARLHHPDP-DN 59
Query: 683 SNKINSKWYGSIPGIDEFDPLFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIAN 742
G + FD FF +SP EA MDP+QR LL+ SW +E+AG P+ +
Sbjct: 60 PGTSYVDKGGFLDDAAGFDAEFFGVSPREAAAMDPQQRLLLETSWELVENAGIDPHSLRG 119
Query: 743 QKIGMFVGVEEGSNYQDRLDQVN------LTSTHNAILSARLAYFMDLKGPVMAINTACS 796
G+F+GV Y + +T A+ S R++Y M L+GP ++++TACS
Sbjct: 120 TATGVFLGVA-KFGYGEDTAAAEDVEGYSVTGVAPAVASGRISYTMGLEGPSISVDTACS 178
Query: 797 SSLVATHIACQSLRQHECDTAISAGVNLMISPEAYIAMTSAGMLSPDGKCYVFDERANGL 856
SSLVA H+A +SLR+ E A+ G +M +P ++ + L+ DG+ F A+G
Sbjct: 179 SSLVALHLAVESLRKGESSMAVVGGAAVMATPGVFVDFSRQRALAADGRSKAFGAGADGF 238
Query: 857 VPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAPNGISQTELIKSVYKK 916
SE V V+L+RLS A +G + A++RGS +N DG +NG++AP+G +Q +I+ +
Sbjct: 239 GFSEGVTLVLLERLSEARRNGHEVLAVVRGSALNQDGASNGLSAPSGPAQRRVIRQALES 298
Query: 917 SNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKF-----CAITSNKSNIGHT 971
L P D++ + HGTGT LGDP+E NAL D TY + + S KSNIGHT
Sbjct: 299 CGLEPGDVDAVEAHGTGTALGDPIEANALLD-----TYGRDRDADRPLWLGSVKSNIGHT 353
Query: 972 FAASGLVSLINLVQSIKYKIIPASLHCEKENNYIILKNSPFYINKSNKKWNTVNEKLRIG 1031
AA+G+ L+ +V +++ +PA+LH E+ ++ + + N+ W E+ R
Sbjct: 354 QAAAGVTGLLKVVLALRNGELPATLHVEEPTPHVDWSSGGVALLAGNQPW-RRGERTRRA 412
Query: 1032 AVSAFGMSGTNAHIVLQEYISTNFKNIKNNTFISSNPYHMVVLSAKTKISLKEKMKQILL 1091
AVSAFG+SGTNAH++++E T +V+SA++ +L+ + QI
Sbjct: 413 AVSAFGISGTNAHVIVEEAPERE----HRETTAHDGRPVPLVVSARSTAALRAQAAQIAE 468
Query: 1092 FLRKNNT----VCIENFVYTLMQGRHHFQYRCAIIISSIEEVV 1130
L + + V L R ++R A++ S+ EE V
Sbjct: 469 LLERPDADLAGVG-----LGLATTRARHEHRAAVVASTREEAV 506
>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, transferase;
2.25A {Burkholderia phymatum}
Length = 412
Score = 143 bits (364), Expect = 6e-37
Identities = 90/453 (19%), Positives = 161/453 (35%), Gaps = 88/453 (19%)
Query: 635 IIGMSGRFPAARNINEFWKILINNKDVISEIPEKIFDWKLYYENPIKSSNKINSKWYGSI 694
I GM G +E L ++ + +P+ +D ++++ +
Sbjct: 10 ITGMGGVTALGSRWDEIEAALKAGRNAVRRMPD--WD----------YFESLHTRLAAPL 57
Query: 695 PGIDEFDPLFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPN-QIANQKIGMFVGVEE 753
PG F + M + ++ S LAL DAG+ + I++ ++G+ G
Sbjct: 58 PG---FAQPAD-WPRKKTRSMGRVSMYAVRASELALADAGFAGDESISDGRMGVAYGSSS 113
Query: 754 GS-----NYQDRLDQ---------------VNLTSTHNAILSARLAYFMDLKGPVMAINT 793
GS + L+ + T+ + ++ F DLKG ++ ++
Sbjct: 114 GSVEPIRAFGTMLESGSMTDVTSNSYVQMMPHTTAVNVSL-------FWDLKGRIVPTSS 166
Query: 794 ACSSSLVATHIACQSLRQHECDTAISAGVNLMISPEAYIAMTSAG---M--LS-----PD 843
AC+S A A +++ + ++ G E A + S P
Sbjct: 167 ACASGSQAIGYAYENIAMGKQTLMLAGGA------EELSGPAVAVFDTLYATSTRNDEPH 220
Query: 844 GKCYVFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAPNG 903
FD + +GLV E +VL+ A + G IHA I G G N DG +T P
Sbjct: 221 LTPRPFDAKRDGLVVGEGAATLVLEEYEHAKARGATIHAEIVGFGCNSDG--AHMTQPTA 278
Query: 904 ISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAITS 963
+ ++ + + L+ I Y+ HGT T GD E A F + I+S
Sbjct: 279 STMARAMQLALEDAKLDANAIAYVNAHGTSTDRGDVAESQATARTFGERM------PISS 332
Query: 964 NKSNIGHTFAASGLVSLINLVQSIKYKIIPASLHCE------KENNYIILKNSPFYINKS 1017
KS +GHT A G + ++ +K +L+ +YI ++
Sbjct: 333 LKSYVGHTLGACGALEAWWTIEMMKRNWYAPTLNLTEVDPACAPLDYI--------RGEA 384
Query: 1018 NKKWNTVNEKLRIGAVSAFGMSGTNAHIVLQEY 1050
+ F G N ++ +
Sbjct: 385 RAI------DAEYVMSNNFAFGGINTSLIFRRV 411
>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing
enzyme, biosynthetic role, carbon-carbon bond formation;
1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1
Length = 416
Score = 143 bits (363), Expect = 8e-37
Identities = 104/435 (23%), Positives = 170/435 (39%), Gaps = 65/435 (14%)
Query: 643 PAARNINEFWKILINNKDVISEIPEKIFDWKLYYENPIKSSNKINSKWYGSIPGIDEFDP 702
P + ++W+ L+ ++ I I FD ++ ++ G + FD
Sbjct: 19 PIGNTLQDYWQGLMEGRNGIGPI--TRFD-----------ASDQACRFGGEVKD---FDA 62
Query: 703 LFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQKIGMFVGV---------EE 753
F + EA+RMD + S A+ DA N++ +IG+ +G ++
Sbjct: 63 TQF-LDRKEAKRMDRFCHFAVCASQQAINDAKLVINELNADEIGVLIGTGIGGLKVLEDQ 121
Query: 754 GSNYQDR-----------LDQVNLTSTHNAILSARLAYFMDLKGPVMAINTACSSSLVAT 802
+ D+ + N+ S AI + KGP TAC++ A
Sbjct: 122 QTILLDKGPSRCSPFMIPMMIANMASGLTAI-------NLGAKGPNNCTVTACAAGSNAI 174
Query: 803 HIACQSLRQHECDTAISAGVNLMISPEAYIAMTSAGMLS-----PDGKCYVFDERANGLV 857
A + ++ I G I+P +Y SA LS P FD+ +G V
Sbjct: 175 GDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFV 234
Query: 858 PSEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAP--NGISQTELIKSVYK 915
E ++L+ L AL+ G I+ + G + D ITAP +G T I K
Sbjct: 235 MGEGSGILILEELESALARGAKIYGEMVGYAMTCDA--YHITAPVPDGRGATRAIAWALK 292
Query: 916 KSNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAITSNKSNIGHTFAAS 975
S L PE ++YI HGT T D E A+ N YN A++S KS GH S
Sbjct: 293 DSGLKPEMVSYINAHGTSTPANDVTETRAIKQALGNHAYN---IAVSSTKSMTGHLLGGS 349
Query: 976 GLVSLINLVQSIKYKIIPASLHCEKENNYIILKNSPFYINKSNKKWNTVNEKLRIGAVSA 1035
G + + V +I +P +++ E + L P +S + + ++
Sbjct: 350 GGIEAVATVMAIAEDKVPPTINLENPDPECDLDYVP---GQSRAL------IVDVALSNS 400
Query: 1036 FGMSGTNAHIVLQEY 1050
FG G N + ++Y
Sbjct: 401 FGFGGHNVTLAFKKY 415
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb
fold, transferase; 2.30A {Staphylococcus aureus}
Length = 437
Score = 143 bits (363), Expect = 1e-36
Identities = 90/434 (20%), Positives = 169/434 (38%), Gaps = 64/434 (14%)
Query: 643 PAARNINEFWKILINNKDVISEIPEKIFDWKLYYENPIKSSNKINSKWYGSIPGIDEFDP 702
P ++ W+ + + I +I D + + G + F+
Sbjct: 40 PIGNDVKTTWENALKGVNGIDKI--TRID-----------TEPYSVHLAGELKN---FNI 83
Query: 703 LFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQKIGMFVGV---------EE 753
I EA RMD ++ + + A++DA N+ +IG+++G
Sbjct: 84 EDH-IDKKEARRMDRFTQYAIVAAREAVKDAQLDINENTADRIGVWIGSGIGGMETFEIA 142
Query: 754 GSNYQDR-----------LDQVNLTSTHNAILSARLAYFMDLKGPVMAINTACSSSLVAT 802
D+ + ++ + +I + KGP A TAC++ +
Sbjct: 143 HKQLMDKGPRRVSPFFVPMLIPDMATGQVSI-------DLGAKGPNGATVTACATGTNSI 195
Query: 803 HIACQSLRQHECDTAISAGVNLMISPEAYIAMTSAGMLS----PDGKCYVFDERANGLVP 858
A + +++ + D I+ G I+ A +++ LS + C F E +G V
Sbjct: 196 GEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALSTNDDIETACRPFQEGRDGFVM 255
Query: 859 SEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAP--NGISQTELIKSVYKK 916
E +V++ L A + G I+A I G G D ITAP G + +++
Sbjct: 256 GEGAGILVIESLESAQARGANIYAEIVGYGTTGDA--YHITAPAPEGEGGSRAMQAAMDD 313
Query: 917 SNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAITSNKSNIGHTFAASG 976
+ + P+D+ Y+ HGT T +GD E+ A+ + F + ++S KS GH A+G
Sbjct: 314 AGIEPKDVQYLNAHGTSTPVGDLNEVKAIKNTFGEAAKH---LKVSSTKSMTGHLLGATG 370
Query: 977 LVSLINLVQSIKYKIIPASLHCEKENNYIILKNSPFYINKSNKKWNTVNEKLRIGAVSAF 1036
+ I SIK + ++H + L P N++ + ++
Sbjct: 371 GIEAIFSALSIKDSKVAPTIHAVTPDPECDLDIVP---NEAQDL------DITYAMSNSL 421
Query: 1037 GMSGTNAHIVLQEY 1050
G G NA +V +++
Sbjct: 422 GFGGHNAVLVFKKF 435
>1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 415
Score = 142 bits (361), Expect = 2e-36
Identities = 73/440 (16%), Positives = 145/440 (32%), Gaps = 81/440 (18%)
Query: 643 PAARNINEFWKILINNKDVISEIPEKIFDWKLYYENPIKSSNKINSKWYGSIPGIDEFDP 702
P + +W +++ + + + FD ++ + G I F
Sbjct: 21 PNGLGLAPYWSAVLDGRHGLGPV--TRFD-----------VSRYPATLAGQIDD---FHA 64
Query: 703 LFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQKIGMFV-----GVEEGSNY 757
I + DP R L + AL+DA P + + +G+ G +
Sbjct: 65 PDH-IPGRLLPQTDPSTRLALTAADWALQDAKADPESLTDYDMGVVTANACGGFDFTHRE 123
Query: 758 QDRLDQ---------------VNLTSTHNAILSARLAYFMDLKGPVMAINTACSSSLVAT 802
+L + + +I ++GP A+ +
Sbjct: 124 FRKLWSEGPKSVSVYESFAWFYAVNTGQISI-------RHGMRGPSSALVAEQAGG---L 173
Query: 803 HIACQSLR--QHECDTAISAGVNLMISPEAYIAMTSAGMLS----PDGKCYVFDERANGL 856
+ R + +S GV+ + P +++ ++G +S PD FDERA G
Sbjct: 174 DALGHARRTIRRGTPLVVSGGVDSALDPWGWVSQIASGRISTATDPDRAYLPFDERAAGY 233
Query: 857 VPSEAVVAVVLKRLSRALSDG-DPIHAIIRGSGINYDGKTNGITAPNGISQTELIKSVYK 915
VP E +VL+ + A + G + + G +D + I+
Sbjct: 234 VPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDP--APGSGR-PAGLERAIRLALN 290
Query: 916 KSNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAITSNKSNIGHTFAAS 975
+ PED++ + G G D E A+ VF + +T K+ G ++
Sbjct: 291 DAGTGPEDVDVVFADGAGVPELDAAEARAIGRVFGREGV-----PVTVPKTTTGRLYSGG 345
Query: 976 GLVSLINLVQSIKYKIIPASLHCEKEN-----NYIILKNSPFYINKSNKKWNTVNEKLRI 1030
G + ++ + S++ +I + + ++ + R
Sbjct: 346 GPLDVVTALMSLREGVIAPTAGVTSVPREYGIDLVL--------GEPRST------APRT 391
Query: 1031 GAVSAFGMSGTNAHIVLQEY 1050
V A G G N+ VL+ +
Sbjct: 392 ALVLARGRWGFNSAAVLRRF 411
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid,
structural genomics; 1.85A {Listeria monocytogenes}
Length = 413
Score = 142 bits (360), Expect = 2e-36
Identities = 91/434 (20%), Positives = 169/434 (38%), Gaps = 64/434 (14%)
Query: 643 PAARNINEFWKILINNKDVISEIPEKIFDWKLYYENPIKSSNKINSKWYGSIPGIDEFDP 702
P + W+ + ++++ + + K + FD
Sbjct: 16 PIGNDAETSWENAKKGVNGVAKM--TRLN-----------PDDFPVKIAAELKD---FDV 59
Query: 703 LFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQKIGMFVGV---------EE 753
+ + EA +MD + + + +A++D+G + ++G+++G +
Sbjct: 60 EKY-LEKKEARKMDRFTHYAIASAEMAVQDSGLVIDDSNANRVGVWIGSGIGGMETFETQ 118
Query: 754 GSNYQDR-----------LDQVNLTSTHNAILSARLAYFMDLKGPVMAINTACSSSLVAT 802
+ +R + ++ S +I KG TAC+++ +
Sbjct: 119 YEIFLNRGHRRVSPFFVPMMIPDMGSGQVSI-------RFGAKGINSTTVTACATATNSI 171
Query: 803 HIACQSLRQHECDTAISAGVNLMISPEAYIAMTSAGMLS----PDGKCYVFDERANGLVP 858
A + + + + D I+ G I+ + T+ LS P+ C FD+ +G +
Sbjct: 172 GDAFKVIERGDADAMITGGAEAPITKMSLAGFTANKALSLNPDPETACRPFDKDRDGFII 231
Query: 859 SEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAP--NGISQTELIKSVYKK 916
E V+L+ A + G I+A I G G D ITAP NG +K
Sbjct: 232 GEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDA--YHITAPAPNGEGAARAMKMAIDD 289
Query: 917 SNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAITSNKSNIGHTFAASG 976
+ L P+ ++YI HGT T D E A+ VF AI+S KS GHT ASG
Sbjct: 290 AGLTPDKVDYINAHGTSTPYNDEYETQAIKTVFGEHAKK---LAISSTKSMTGHTLGASG 346
Query: 977 LVSLINLVQSIKYKIIPASLHCEKENNYIILKNSPFYINKSNKKWNTVNEKLRIGAVSAF 1036
+ I + +I+ II ++H + ++ L P N++ + + + ++F
Sbjct: 347 GIEAIFALLTIRDNIIAPTIHLKNQDEVCDLDYVP---NEAREA------NVNVVISNSF 397
Query: 1037 GMSGTNAHIVLQEY 1050
G G NA +V +
Sbjct: 398 GFGGHNATLVFKRI 411
>1tqy_A Beta-ketoacyl synthase/acyl transferase; alpha-beta-alpha-beta-alpha,
heterodimer, transferase; 2.00A {Streptomyces coelicolor}
SCOP: c.95.1.1 c.95.1.1
Length = 424
Score = 139 bits (353), Expect = 2e-35
Identities = 87/450 (19%), Positives = 168/450 (37%), Gaps = 69/450 (15%)
Query: 633 IAIIGMSGRFPAARNINEFWKILINNKDVISEIPEKIFDWKLYYENPIKSSNKINSKWYG 692
+ I G+ R P +FW++L + + I FD + S+
Sbjct: 5 VVITGVGVRAPGGNGTRQFWELLTSGRTATRRI--SFFD-----------PSPYRSQVAA 51
Query: 693 SIPGIDEFDPLFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQKIGMFVGV- 751
D P E +RMD + + + A +G P+ + ++G+ +G
Sbjct: 52 EA---DFDPVAEG-FGPRELDRMDRASQFAVACAREAFAASGLDPDTLDPARVGVSLGSA 107
Query: 752 --------EEGSNYQDRLDQVNLTSTH-----------NAILSARLAYFMDLKGPVMAIN 792
E D + + + ++ A +A+ + +GPV ++
Sbjct: 108 VAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPS-VMPAEVAWAVGAEGPVTMVS 166
Query: 793 TACSSSLVATHIACQSLRQHECDTAISAGVNLMISPEAYIAMTSAGMLS-----PDGKCY 847
T C+S L + A +++ + D + + I+P + + P+
Sbjct: 167 TGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARNDDPEHASR 226
Query: 848 VFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAP--NGIS 905
FD +G V +E VL+ AL+ G IHA I G + +T +G
Sbjct: 227 PFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNA--YHMTGLKADGRE 284
Query: 906 QTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAITSNK 965
E I+ +S + DI+YI HG+GT+ D E A ++S K
Sbjct: 285 MAETIRVALDESRTDATDIDYINAHGSGTRQNDRHETAAYKRALGEHARR---TPVSSIK 341
Query: 966 SNIGHTFAASGLVSLINLVQSIKYKIIPASLHCEKEN-----NYIILKNSPFYINKSNKK 1020
S +GH+ A G + + V ++++ ++P + + + +Y+ P ++ ++
Sbjct: 342 SMVGHSLGAIGSLEIAACVLALEHGVVPPTANLRTSDPECDLDYV-----P---LEARER 393
Query: 1021 WNTVNEKLRIGAVSAFGMSGTNAHIVLQEY 1050
KLR G G + +VL++
Sbjct: 394 ------KLRSVLTVGSGFGGFQSAMVLRDA 417
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes,
fatty acid elongation, acyl-carrier protein (ACP); HET:
CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Length = 408
Score = 138 bits (349), Expect = 4e-35
Identities = 99/433 (22%), Positives = 168/433 (38%), Gaps = 67/433 (15%)
Query: 643 PAARNINEFWKILINNKDVISEIPEKIFDWKLYYENPIKSSNKINSKWYGSIPGIDEFDP 702
P F K + K + I FD ++ + + + DP
Sbjct: 14 PIGVGQEAFHKAQLAGKSGVRPI--TRFD-----------ASALPVRIAAEVD----VDP 56
Query: 703 LFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQKIGMFVGV---------EE 753
+ + E R+D ++ L + LALEDAG P + +++G VG +
Sbjct: 57 GAY-LDRKELRRLDRFVQYALIAAQLALEDAGLKPEDLDPERVGTLVGTGIGGMETWEAQ 115
Query: 754 GSNYQDR-----------LDQVNLTSTHNAILSARLAYFMDLKGPVMAINTACSSSLVAT 802
+ +R + N+ S H A+ GP + TAC++ A
Sbjct: 116 SRVFLERGPNRISPFFIPMMIANMASAHIAM-------RYGFTGPSSTVVTACATGADAL 168
Query: 803 HIACQSLRQHECDTAISAGVNLMISPEAYIAMTSAGMLS-----PDGKCYVFDERANGLV 857
A + ++ E D ++ G I+P A A LS P+ F +G V
Sbjct: 169 GSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFV 228
Query: 858 PSEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAP--NGISQTELIKSVYK 915
E +VL+ A G I+A + G G + D + IT P G + K
Sbjct: 229 MGEGAGVLVLEAYEHAKKRGARIYAELVGFGRSADA--HHITEPHPEGKGAALAMARALK 286
Query: 916 KSNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAITSNKSNIGHTFAAS 975
+ + PE + YI HGT T +GD E+ A+ VF + ++S KS IGH A+
Sbjct: 287 DAGIAPEQVGYINAHGTSTPVGDRAEVLAIKRVFGDHAKR---LMVSSTKSMIGHLLGAA 343
Query: 976 GLVSLINLVQSIKYKIIPASLHCEKENNYIILKNSPFYINKSNKKWNTVNEKLRIGAVSA 1035
G V I VQ++ + +IP +++ E + + L ++ + + K+ ++
Sbjct: 344 GAVEAIATVQALYHGVIPPTINLEDPDPELDLD----FVPEPREA------KVDYALSNS 393
Query: 1036 FGMSGTNAHIVLQ 1048
F G NA + +
Sbjct: 394 FAFGGHNAVLAFK 406
>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl
carrier protein) synthase, lipid metabol condensing
enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1
c.95.1.1 PDB: 1w0i_A
Length = 431
Score = 138 bits (349), Expect = 6e-35
Identities = 96/441 (21%), Positives = 174/441 (39%), Gaps = 61/441 (13%)
Query: 643 PAARNINEFWKILINNKDVISEIPEKIFD---WKLYYENPIKSSNKINSKWYGSIP---G 696
P R + W+ LI+ + I + D E + + ++++SK +P
Sbjct: 13 PLGRGVETTWRRLIDGECGIRGLTL--DDLKMKSFDEETKLYTFDQLSSKVAAFVPYGSN 70
Query: 697 IDEFDPLFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQ-KIGMFVG----- 750
EFD + L ++ + + + + AL DA + P + + + G+ +G
Sbjct: 71 PGEFDEALW----LNSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSIGGGIGS 126
Query: 751 VEEGSNYQDRLDQ---------------VNLTSTHNAILSARLAYFMDLKGPVMAINTAC 795
+ + + + VN+ S H ++ +GP A TAC
Sbjct: 127 ICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSM-------KYGFQGPNHAAVTAC 179
Query: 796 SSSLVATHIACQSLRQHECDTAISAGVNLMISPEAYIAMTSAGMLS------PDGKCYVF 849
++ + A + ++ + D ++ G I + + + LS P F
Sbjct: 180 ATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRPF 239
Query: 850 DERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAP--NGISQT 907
D +G V E +VL+ A G I+A + G G++ D + IT P +G
Sbjct: 240 DCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDA--HHITQPPEDGKGAV 297
Query: 908 ELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAITSNKSN 967
+ ++S L P I+Y+ H T T +GD VE A+ VF + A +S K
Sbjct: 298 LAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHATSGTL-AFSSTKGA 356
Query: 968 IGHTFAASGLVSLINLVQSIKYKIIPASLHCEKENNYIILKNSPFYINKSNKKWNTVNEK 1027
GH A+G V I + +I + + P +L+ + + + P S K
Sbjct: 357 TGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIFDKRFMPL--TTSKKM------L 408
Query: 1028 LRIGAVS-AFGMSGTNAHIVL 1047
+R A+S +FG GTNA ++
Sbjct: 409 VRT-AMSNSFGFGGTNASLLF 428
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin,
platencin A1, KAS2, acyltransferase, fatty acid
biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB:
3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A*
2gfw_A 2gfy_A* 1kas_A 1b3n_A
Length = 427
Score = 137 bits (348), Expect = 8e-35
Identities = 87/433 (20%), Positives = 167/433 (38%), Gaps = 64/433 (14%)
Query: 643 PAARNINEFWKILINNKDVISEIPEKIFDWKLYYENPIKSSNKINSKWYGSIPGIDEFDP 702
P + WK L+ + IS I FD ++ +K+ G + F+
Sbjct: 30 PVGNTVESTWKALLAGQSGISLI--DHFD-----------TSAYATKFAGLVKD---FNC 73
Query: 703 LFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQKIGMFVGV---------EE 753
IS E +MD ++ + A++D+G + +IG +G E
Sbjct: 74 EDI-ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAIGSGIGGLGLIEEN 132
Query: 754 GSNYQDR-----------LDQVNLTSTHNAILSARLAYFMDLKGPVMAINTACSSSLVAT 802
++ + VN+ + H I L+GP ++I TA +S +
Sbjct: 133 HTSLMNGGPRKISPFFVPSTIVNMVAGHLTI-------MYGLRGPSISIATAATSGVHNI 185
Query: 803 HIACQSLRQHECDTAISAGVNLMISPEAYIAMTSAGMLS-----PDGKCYVFDERANGLV 857
A + + + D ++ G +P +A LS P +D+ +G V
Sbjct: 186 GHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFV 245
Query: 858 PSEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAP--NGISQTELIKSVYK 915
+ +VL+ A G I+A + G G++ D +T+P NG + + +
Sbjct: 246 LGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDA--YHMTSPPENGAGAALAMANALR 303
Query: 916 KSNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAITSNKSNIGHTFAAS 975
+ + I Y+ HGT T GD E A+ +F ++S KS GH A+
Sbjct: 304 DAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAASR---VLVSSTKSMTGHLLGAA 360
Query: 976 GLVSLINLVQSIKYKIIPASLHCEKENNYIILKNSPFYINKSNKKWNTVNEKLRIGAVSA 1035
G V I + +++ + +P +++ + + L P +++ + + ++
Sbjct: 361 GAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVP---HEARQV-----SGMEYTLCNS 412
Query: 1036 FGMSGTNAHIVLQ 1048
FG GTN ++ +
Sbjct: 413 FGFGGTNGSLIFK 425
>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria,
mitochondrion, lipid synthesis, fatty acid SYN fatty acid
biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A 2c9h_A
Length = 438
Score = 133 bits (337), Expect = 3e-33
Identities = 99/442 (22%), Positives = 173/442 (39%), Gaps = 74/442 (16%)
Query: 643 PAARNINEFWKILINNKDVISEIPEKIFDWKLYYENPIKSSNKINSKWYGSIPGID---E 699
P + W LI + I + ++K +P +
Sbjct: 33 PLGVGTHLVWDRLIGGESGIVSLVG--EEYKSI-----------PCSVAAYVPRGSDEGQ 79
Query: 700 FDPLFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQ-KIGMFVG-----VEE 753
F+ F +S + + M + + LA++D+G+ P A+Q G+ +G +E
Sbjct: 80 FNEQNF-VSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQSEADQVATGVAIGMGMIPLEV 138
Query: 754 GSNYQDRLDQ---------------VNLTSTHNAILSARLAYFMDLKGPVMAINTACSSS 798
S VN+ + +I LKGP A++TAC++
Sbjct: 139 VSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSI-------RYKLKGPNHAVSTACTTG 191
Query: 799 LVATHIACQSLRQHECDTAISAGVNLMISPEAYIAMTSAGMLS----PDGKCYVFDERAN 854
A + + + + D ++ G + ISP + + A LS P C F + +
Sbjct: 192 AHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALSTNSDPKLACRPFHPKRD 251
Query: 855 GLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAP--NGISQTELIKS 912
G V E +VL+ A+ I+A + G G++ D ITAP G + +
Sbjct: 252 GFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDA--GHITAPDPEGEGALRCMAA 309
Query: 913 VYKKSNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAITSNKSNIGHTF 972
K + + PE+I+YI H T T LGD E A+ +FK+ Y A++S K GH
Sbjct: 310 ALKDAGVQPEEISYINAHATSTPLGDAAENKAIKHLFKDHAYA---LAVSSTKGATGHLL 366
Query: 973 AASGLVSLINLVQSIKYKIIPASLHCEKEN-----NYIILKNSPFYINKSNKKWNTVNEK 1027
A+G V + Y+ +P +L+ + NY+ P K+ + ++
Sbjct: 367 GAAGAVEAAFTTLACYYQKLPPTLNLDCSEPEFDLNYV-----P---LKAQEW--KTEKR 416
Query: 1028 LRIGAVS-AFGMSGTNAHIVLQ 1048
++ +FG GTNA + +
Sbjct: 417 FI--GLTNSFGFGGTNATLCIA 436
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 138 bits (350), Expect = 3e-33
Identities = 59/424 (13%), Positives = 121/424 (28%), Gaps = 105/424 (24%)
Query: 692 GSIPGIDEFDPLFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQKIGMF-VG 750
G IP ++ + IS ++DP +L A +G + + + VG
Sbjct: 988 GQIP--TGWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVG 1045
Query: 751 VEEGS----------NYQDRLDQ-------------VNLTSTHNAILSARLAYFMDLKGP 787
GS ++DR +++ N +L + GP
Sbjct: 1046 NCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLL-------ISSSGP 1098
Query: 788 VMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLMISPEAYIAMTSAG---M--LS- 841
+ AC++S+ + I +++ + I G + + S M S
Sbjct: 1099 IKTPVGACATSVESVDIGVETILSGKARICIVGGY------DDFQEEGSFEFGNMKATSN 1152
Query: 842 ----------PDGKCYVFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGINY 891
P NG + ++ ++ + AL G PI+ I+ +
Sbjct: 1153 TLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATAT 1212
Query: 892 DGKTNGITAP---NGISQT------------ELIKSVYKKSNLN----------PEDINY 926
D G + P GI T + Y+K L ++
Sbjct: 1213 DK--IGRSVPAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEA 1270
Query: 927 IITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAITSNKSNIGHTFAASGLVSLINLVQS 986
+ D E +N+ + + + G+ F +
Sbjct: 1271 LKLEAEEIPSEDQNEFLLERTRE---IHNEAESQLRAAQQQWGNDFYKRD-----PRIAP 1322
Query: 987 IKYKIIPASLHCEKENNYIILKNSPFYINK--SNKKWNTVNEKLRIGAVSAFG-MSGTNA 1043
++ + L + + ++ K N NE I + + +
Sbjct: 1323 LRGALATYGLTIDDLG----------VASFHGTSTKANDKNESATINEM--MKHLGRSEG 1370
Query: 1044 HIVL 1047
+ V+
Sbjct: 1371 NPVI 1374
Score = 106 bits (266), Expect = 3e-23
Identities = 30/187 (16%), Positives = 68/187 (36%), Gaps = 27/187 (14%)
Query: 877 GDPI-HAIIRGSGINYDGKTN--------GITAPNGISQTELIKSVYKKSNLNPEDINYI 927
D + R I+ + ++ G + ++ L +D+
Sbjct: 1281 EDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVA 1340
Query: 928 ITHGTGTKLGDPVEINALHDVFKNKTYNQ-KFCAITSNKSNIGHTFAASGLVSLINLVQS 986
HGT TK D E ++++ K+ ++ K GH A+G + +Q
Sbjct: 1341 SFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQI 1400
Query: 987 IKYKIIPASLHCE------KENNYIILKNSPFYINKSNKKWNTVNEKLRIGAVSAFGMSG 1040
+ IIP + + + ++ Y++ Y +K+ K + +R ++++FG
Sbjct: 1401 LNSGIIPGNRNADNVDKILEQFEYVL------YPSKTLKT-----DGVRAVSITSFGFGQ 1449
Query: 1041 TNAHIVL 1047
++
Sbjct: 1450 KGGQAIV 1456
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A
{Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB:
1oxh_A 2alm_A 2rjt_A
Length = 430
Score = 131 bits (333), Expect = 7e-33
Identities = 91/434 (20%), Positives = 154/434 (35%), Gaps = 67/434 (15%)
Query: 643 PAARNINEFWKILINNKDVISEIPEKIFDWKLYYENPIKSSNKINSKWYGSIPGIDEFDP 702
P EFW L K I I FD + + I F
Sbjct: 35 PIGNTPEEFWNSLATGKIGIGGI--TKFD-----------HSDFDVHNAAEIQD---FPF 78
Query: 703 LFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQKIGMFVGV---------EE 753
+ + R D + L + A+ A + + G+ V ++
Sbjct: 79 DKY-FVKKDTNRFDNYSLYALYAAQEAVNHANLDVEALNRDRFGVIVASGIGGIKEIEDQ 137
Query: 754 GSNYQDR-----------LDQVNLTSTHNAILSARLAYFMDLKGPVMAINTACSSSLVAT 802
++ N+ S + A+ G +INTACSSS A
Sbjct: 138 VLRLHEKGPKRVKPMTLPKALPNMASGNVAM-------RFGANGVCKSINTACSSSNDAI 190
Query: 803 HIACQSLRQHECDTAISAGVNLMISPEAYIAMTSAGMLS----PDGKCYVFDERANGLVP 858
A +S++ D + G I+P A + LS P FD+ NG V
Sbjct: 191 GDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALSTTEDPTRASIPFDKDRNGFVM 250
Query: 859 SEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAP--NGISQTELIKSVYKK 916
E +VL+ L A G I A + G G D +T+P G + IK ++
Sbjct: 251 GEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDA--YHMTSPHPEGQGAIKAIKLALEE 308
Query: 917 SNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAITSNKSNIGHTFAASG 976
+ ++PE + Y+ HGT T + E A+ V + ++S KS GH A+G
Sbjct: 309 AEISPEQVAYVNAHGTSTPANEKGESGAIVAVLGKEV------PVSSTKSFTGHLLGAAG 362
Query: 977 LVSLINLVQSIKYKIIPASLHCEKENNYIILKNSPFYINKSNKKWNTVNEKLRIGAVSAF 1036
V I ++++++ +P + + ++YI + +K ++ + F
Sbjct: 363 AVEAIVTIEAMRHNFVPMTAGTSEVSDYIEANVVY---GQGLEK------EIPYAISNTF 413
Query: 1037 GMSGTNAHIVLQEY 1050
G G NA + + +
Sbjct: 414 GFGGHNAVLAFKRW 427
>4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct genomics,
seattle structural genomics center for infectious
transferase; 1.90A {Burkholderia vietnamiensis} PDB:
4f32_A*
Length = 451
Score = 132 bits (334), Expect = 8e-33
Identities = 92/443 (20%), Positives = 153/443 (34%), Gaps = 71/443 (16%)
Query: 643 PAARNINEFWKILINNKDVISEIPEKIFDWKLYYENPIKSSNKINSKWYGSIPGIDEFDP 702
P W+ LI + + + K + G FDP
Sbjct: 36 PLGCGKELVWQRLIGGGSGLRRLGD--DIAGEL---SAKVGGTVQDVAEDPEGG---FDP 87
Query: 703 LFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQ-KIGMFVGVEEGS-----N 756
+ E +MD + + + AL +AG+ P + + V G
Sbjct: 88 ERS-VPHKELRKMDRFIQMAMVAADEALAEAGWAPEAEQQRERTATVVASGIGGFPGLAE 146
Query: 757 YQDRLDQ---------------VNLTSTHNAILSARLAYFMDLKGPVMAINTACSSSLVA 801
+ NL + +I +GP+ TAC++S+ A
Sbjct: 147 AVRIGETRGVRRLSPFTIPFFLSNLAAGQISI-------KHRFRGPLGCPVTACAASVQA 199
Query: 802 THIACQSLRQHECDTAISAGVNLMISPEAYIAMTSAGMLS------PDGKCYVFDERANG 855
A + +R E D ++ G + +A LS P FD +G
Sbjct: 200 IGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFDRDRDG 259
Query: 856 LVPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAP--NGISQTELIKSV 913
V E VV++ L AL+ G A I G G D +TA +G +K
Sbjct: 260 FVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADA--YHMTAGPDDGSGAMRAMKLA 317
Query: 914 YKKSNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAITSNKSNIGHTFA 973
+ ++ PE ++Y+ H T T +GD EI AL VF AI+S KS GH
Sbjct: 318 LRMGDVAPEQVDYVNAHATSTPVGDAGEIEALKTVFGVGAGP----AISSTKSATGHLLG 373
Query: 974 ASGLVSLINLVQSIKYKIIPASLHCEKEN------NYIILKNSPFYINKSNKKWNTVNEK 1027
A+G + + +++ ++P +L+ E + + I +
Sbjct: 374 AAGAIEAAFSILALRDGVLPGTLNLEHPDPAADGLDLI-----G---PAARHV------P 419
Query: 1028 LRIGAVSAFGMSGTNAHIVLQEY 1050
+ I + FG G NA ++ + Y
Sbjct: 420 VEIALSNGFGFGGVNASVLFRRY 442
>2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase I
thiolactomycin, cytoplasm, transferase, acyltransferase;
HET: TLM; 1.80A {Mycobacterium tuberculosis} PDB: 2wgd_A*
2wgg_A* 2wgf_A*
Length = 416
Score = 130 bits (329), Expect = 2e-32
Identities = 85/441 (19%), Positives = 156/441 (35%), Gaps = 81/441 (18%)
Query: 643 PAARNINEFWKILINNKDVISEIPEKIFDWKLYYENPIKSSNKINSKWYGSIPGIDEFDP 702
+ +I WK L+ + I + + + + K G +
Sbjct: 24 SISPDIESTWKGLLAGESGIHALED--EF---------VTKWDLAVKIGGHLKD----PV 68
Query: 703 LFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQKIGMFV-----GVEEGSNY 757
+ L+ RM QR E AG ++ + + V G E
Sbjct: 69 DSH-MGRLDMRRMSYVQRMGKLLGGQLWESAGS--PEVDPDRFAVVVGTGLGGAERIVES 125
Query: 758 QDRLDQ---------------VNLTSTHNAILSARLAYFMDLKGPVMAINTACSSSLVAT 802
D ++ N + + + + VM +ACSS A
Sbjct: 126 YDLMNAGGPRKVSPLAVQMIMPNGAAAVIGL-------QLGARAGVMTPVSACSSGSEAI 178
Query: 803 HIACQSLRQHECDTAISAGVNLMISPEAYIAMTSAGMLS-----PDGKCYVFDERANGLV 857
A + + + D A+ GV I A + +S P+ FD+ +G V
Sbjct: 179 AHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTRNDEPERASRPFDKDRDGFV 238
Query: 858 PSEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAP--NGISQTELIKSVYK 915
EA ++++ A + G A + G+GI D + AP +G+ + +
Sbjct: 239 FGEAGALMLIETEEHAKARGAKPLARLLGAGITSDA--FHMVAPAADGVRAGRAMTRSLE 296
Query: 916 KSNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAITSNKSNIGHTFAAS 975
+ L+P DI+++ HGT T +GD E NA+ ++ A+ + KS +GH+ A
Sbjct: 297 LAGLSPADIDHVNAHGTATPIGDAAEANAIRVAGCDQA------AVYAPKSALGHSIGAV 350
Query: 976 GLVSLINLVQSIKYKIIPASLHCEKEN-----NYIILKNSPFYINKSNKKWNTVNEKLRI 1030
G + + V +++ +IP +L+ E + + + + R
Sbjct: 351 GALESVLTVLTLRDGVIPPTLNYETPDPEIDLDVV-----A---GEPRYG------DYRY 396
Query: 1031 GAVS-AFGMSGTNAHIVLQEY 1050
AV+ +FG G N + Y
Sbjct: 397 -AVNNSFGFGGHNVALAFGRY 416
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Mycobacterium tuberculosis}
Length = 434
Score = 129 bits (328), Expect = 4e-32
Identities = 98/439 (22%), Positives = 165/439 (37%), Gaps = 75/439 (17%)
Query: 643 PAARNINEFWKILINNKDVISEIPEKIFDWKLYYENPIKSSNKINSKWYGSIPGIDEFDP 702
A + WK+L++ + I + + + ++ P++ G + +EFD
Sbjct: 40 ALATDAETTWKLLLDRQSGIRTLDDPFVEE---FDLPVRIG--------GHLL--EEFDH 86
Query: 703 LFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQKIGMFV-----GVEEGSNY 757
+++ +E RM QR S E+AG ++ ++ + + EE
Sbjct: 87 ---QLTRIELRRMGYLQRMSTVLSRRLWENAGS--PEVDTNRLMVSIGTGLGSAEELVFS 141
Query: 758 QDRLDQ---------------VNLTSTHNAILSARLAYFMDLKGPVMAINTACSSSLVAT 802
D + N + + K VM +AC+S A
Sbjct: 142 YDDMRARGMKAVSPLTVQKYMPNGAAAAVGL-------ERHAKAGVMTPVSACASGAEAI 194
Query: 803 HIACQSLRQHECDTAISAGVNLMISPEA---YIAMTSAGMLS-----PDGKCYVFDERAN 854
A Q + E D AI GV I + M +S P G C FD +
Sbjct: 195 ARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIV--MSTNNDDPAGACRPFDRDRD 252
Query: 855 GLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAP--NGISQTELIKS 912
G V E ++++ A + G I A I G+ I DG + AP NG I
Sbjct: 253 GFVFGEGGALLLIETEEHAKARGANILARIMGASITSDG--FHMVAPDPNGERAGHAITR 310
Query: 913 VYKKSNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAITSNKSNIGHTF 972
+ + L P DI+++ H TGT++GD E A+++ A+ + KS +GH+
Sbjct: 311 AIQLAGLAPGDIDHVNAHATGTQVGDLAEGRAINNALGGNR-----PAVYAPKSALGHSV 365
Query: 973 AASGLVSLINLVQSIKYKIIPASLHCEKENNYIILKNSPFYINKSNKKWNTVNEKLRIGA 1032
A G V I V +++ ++IP +L+ + I L + R A
Sbjct: 366 GAVGAVESILTVLALRDQVIPPTLNLVNLDPEIDLDVVA---GEPRPG------NYRY-A 415
Query: 1033 VS-AFGMSGTNAHIVLQEY 1050
++ +FG G N I Y
Sbjct: 416 INNSFGFGGHNVAIAFGRY 434
>3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography,
beta-ketoacyl SYN brucella melitensis, fragments of LIFE;
HET: 3MQ; 1.25A {Brucella melitensis biovar abortus} PDB:
3lrf_A* 3u0e_A* 3u0f_A*
Length = 428
Score = 129 bits (326), Expect = 5e-32
Identities = 91/428 (21%), Positives = 157/428 (36%), Gaps = 64/428 (14%)
Query: 647 NINEFWKILINNKDVISEIPEKIFDWKLYYENPIKSSNKINSKWYGSIPGIDEFDPLFFE 706
N E L K IS E + + + G + D
Sbjct: 39 NTEEVTASLREAKSGISRAEE--YA-----------ELGFRCQ----VHGAPDIDIESL- 80
Query: 707 ISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQKIGMFVG---------VEEGSNY 757
+ A+ DAG +++N++ G+ +G V+
Sbjct: 81 VDRRAMRFHGRGTAWNHIAMDQAIADAGLTEEEVSNERTGIIMGSGGPSTRTIVDSADIT 140
Query: 758 QDR-LDQVN---LTSTHNAILSARLAYFMDLKGPVMAINTACSSSLVATH-I--ACQSLR 810
+++ +V + ++ SA LA F +KG +I++AC++S H I A + ++
Sbjct: 141 REKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSISSACATS---NHCIGNAYEMIQ 197
Query: 811 QHECDTAISAGVNLMISPEAYIAMTSAGMLS------PDGKCYVFDERANGLVPSEAVVA 864
+ D + G + + + + G +S P +D+ +G V +
Sbjct: 198 YGKQDRMFAGGCEDLDWTLS-VLFDAMGAMSSKYNDTPSTASRAYDKNRDGFVIAGGAGV 256
Query: 865 VVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAPNGISQTELIKSVYKKSNLNPEDI 924
+VL+ L AL+ G I+ I G G DG + AP+G +K I
Sbjct: 257 LVLEDLETALARGAKIYGEIVGYGATSDG--YDMVAPSGEGAIRCMKMALSTV---TSKI 311
Query: 925 NYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAITSNKSNIGHTFAASGLVSLINLV 984
+YI H T T GD EI A+ +F I + KS GH+ A+G+ I +
Sbjct: 312 DYINPHATSTPAGDAPEIEAIRQIFGAGDVC---PPIAATKSLTGHSLGATGVQEAIYSL 368
Query: 985 QSIKYKIIPASLHCEK--ENNYIILKNSPFYINKSNKKWNTVNEKLRIGAVSAFGMSGTN 1042
++ I S H E+ + P + + +L ++FG GTN
Sbjct: 369 LMMQNNFICESAHIEELDPA----FADMPIVRKRIDNV------QLNTVLSNSFGFGGTN 418
Query: 1043 AHIVLQEY 1050
A +V Q Y
Sbjct: 419 ATLVFQRY 426
>3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural
genomics center for infectious disease, ssgcid,
acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A
Length = 428
Score = 129 bits (326), Expect = 6e-32
Identities = 109/447 (24%), Positives = 189/447 (42%), Gaps = 81/447 (18%)
Query: 643 PAARNINEFWKILINNKDVISEIPEKIFDWKLYYENPIKSSNKINSKWYGSIPGIDE--- 699
P A + E WK L+ + + E F+ + + + IP D
Sbjct: 22 PLASGVEETWKRLLAGESGARRVTE--FE-----------VDDLACQIACRIPVGDGTNG 68
Query: 700 -FDPLFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQ-KIGMFV-----GVE 752
F+P + P E ++DP + + + AL+DAG+ P +Q + G+ + G+E
Sbjct: 69 TFNPDLH-MDPKEQRKVDPFIVYAVGAADQALDDAGWHPENDEDQVRTGVLIGSGIGGIE 127
Query: 753 EGSNYQDRLDQ---------------VNLTSTHNAILSARLAYFMDLKGPVMAINTACSS 797
L +NL S H +I L+GP ++ TAC++
Sbjct: 128 GIVEAGYTLRDKGPRRISPFFIPGRLINLASGHVSI-------KHKLRGPNHSVVTACAT 180
Query: 798 SLVATHIACQSLRQHECDTAISAGVNLMISPEAYIAMTSAGMLS------PDGKCYVFDE 851
A A + + + D ++ G +S + + LS P +DE
Sbjct: 181 GTHAIGDAARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERNDDPTAASRPYDE 240
Query: 852 RANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAP--NGISQTEL 909
+G V E VVL+ L AL+ G I+A + G G++ D ITAP +G
Sbjct: 241 DRDGFVMGEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDA--FHITAPTESGEGAQRC 298
Query: 910 IKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAITSNKSNIG 969
+ + K++ + P++I+YI HGT T + D +E+ A+ V +++S KS+IG
Sbjct: 299 MVAALKRAGIVPDEIDYINAHGTST-MADTIELGAVERVVGEAAAK---ISMSSTKSSIG 354
Query: 970 HTFAASGLVSLINLVQSIKYKIIPASLHCEKEN-----NYIILKNSPFYINKSNKKWNTV 1024
H A+G + +I+ I PA+L+ + + + P +K ++
Sbjct: 355 HLLGAAGAAEAVFSTLAIRDNIAPATLNLDNPAAQTRIDLV-----P---HKPRER---- 402
Query: 1025 NEKLRIGAVS-AFGMSGTNAHIVLQEY 1050
K+ + A+S +FG GTNA +VL+ Y
Sbjct: 403 --KIDV-ALSNSFGFGGTNASLVLRRY 426
>2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic,
transferase, amino-thiazole, acyltransferase, lipid
synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP:
c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A*
2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A 1dd8_A
2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A* 2cf2_A
2byw_A ...
Length = 406
Score = 122 bits (309), Expect = 6e-30
Identities = 91/433 (21%), Positives = 164/433 (37%), Gaps = 75/433 (17%)
Query: 647 NINEFWKILINNKDVISEIPEKIFDWKLYYENPIKSSNKINSKWYGSIPGIDEFDPLFFE 706
N E L + I+ E + + S +G++ D
Sbjct: 18 NQQEVLASLREGRSGITFSQE--LK-----------DSGMRSHVWGNVK----LDTTGL- 59
Query: 707 ISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQ-KIGMFVGVEEGSNYQDRLDQVN 765
I M + A+ DAG P N ++G+ G GS + ++ +
Sbjct: 60 IDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSP-RFQVFGAD 118
Query: 766 LTSTHNA---------------ILSARLAYFMDLKGPVMAINTACSSSLVATHIACQSLR 810
+SA LA + G +I++AC++S A + ++
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 178
Query: 811 QHECDTAISAGVNLMISPEAYIAMTSAGMLS------PDGKCYVFDERANGLVPSEAVVA 864
+ D + G + A + G LS P+ +D +G V +
Sbjct: 179 LGKQDIVFAGGGEELCWEMA-CEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 237
Query: 865 VVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAPNGISQTELIKSVYKKSNLNPEDI 924
VV++ L AL+ G I+A I G G DG + AP+G +K + I
Sbjct: 238 VVVEELEHALARGAHIYAEIVGYGATSDG--ADMVAPSGEGAVRCMKMAMHGVD---TPI 292
Query: 925 NYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAITSNKSNIGHTFAASGLVSLINLV 984
+Y+ +HGT T +GD E+ A+ +VF +K+ AI++ K+ GH+ A+G+ I +
Sbjct: 293 DYLNSHGTSTPVGDVKELAAIREVFGDKSP-----AISATKAMTGHSLGAAGVQEAIYSL 347
Query: 985 QSIKYKIIPASLHCEK-----ENNYIILKNSPFYINK--SNKKWNTVNEKLRIGAVSAFG 1037
+++ I S++ E+ I+ + + + SN +FG
Sbjct: 348 LMLEHGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSN----------------SFG 391
Query: 1038 MSGTNAHIVLQEY 1050
GTNA +V+++
Sbjct: 392 FGGTNATLVMRKL 404
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 113 bits (284), Expect = 1e-25
Identities = 52/238 (21%), Positives = 89/238 (37%), Gaps = 30/238 (12%)
Query: 237 GTYLITGGTGRLGMLFSDYLINKY-STNLILSGRSKLNS----IIYKKLKKFNNKAIYIQ 291
GT L+TGGTG LG + +L+ + NL+L R + + +L + +
Sbjct: 531 GTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQA 590
Query: 292 VDVSDK---LKMISEINSIINNIGPIDGVLHIAGISGLTSNILEA-NYKNFYSVLSSKIS 347
DV+D+ K+++ I P+ V+H AG+ L + E+ + VL K+
Sbjct: 591 CDVADRETLAKVLASIPDE----HPLTAVVHAAGV--LDDGVSESLTVERLDQVLRPKVD 644
Query: 348 GTIALNYALENTILKLQKNKLDFVCYFSSSSAILGDFGSCDYAMGNRFQTVYAKYLNNKN 407
G L ++ + FSS S +LG G +YA N F A+ ++
Sbjct: 645 GARNLLELID---------PDVALVLFSSVSGVLGSGGQGNYAAANSFLDALAQQRQSRG 695
Query: 408 IYKKYTNKLITINWPLWNNSKFKIGNNEQTDFYFKSSKQKVLHENDGLKLFEQLLIQD 465
+ ++ W W E S + +GL F+
Sbjct: 696 L------PTRSLAWGPWAEHGMASTLREAEQDRLARSGLLPISTEEGLSQFDAACGGA 747
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 104 bits (260), Expect = 2e-22
Identities = 47/304 (15%), Positives = 89/304 (29%), Gaps = 57/304 (18%)
Query: 700 FDPLFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQKIGMF-VGVEEGS--- 755
+D + + +++DP ++L AL +G + + + VG GS
Sbjct: 1168 WDARRYGVPEDIIQQVDPVTLYVLVSVAEALLSSGITDPYEFYKYVHLSEVGNCIGSGVG 1227
Query: 756 -------NYQDRLDQ-------------VNLTSTHNAILSARLAYFMDLKGPVMAINTAC 795
Y+DR + + N +L + GP+ AC
Sbjct: 1228 GTSALRGMYKDRYLDKPVQKDILQESFVNTMAAWVNMLL-------LSSTGPIKTPVGAC 1280
Query: 796 SSSLVATHIACQSLRQHECDTAISAGVNLMISPEAYI------AMTSAGMLS-----PDG 844
++++ + + ++ Q + + G + E A ++A P
Sbjct: 1281 ATAVESLDVGYDTIMQGKARVCLVGGFD-DFQEEGSYEFANMGATSNAKEEFARGREPGE 1339
Query: 845 KCYVFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAPN-G 903
NG + S+ V+ AL G PI+ I+ + D G + P G
Sbjct: 1340 MSRPTSTTRNGFMESQGCGVQVIMTAQLALEMGVPIYGIVAMTSTATDK--IGRSVPAPG 1397
Query: 904 ISQTELIKSVYKKSNLNPEDINY-----------IITHGTGTKLGDPVEINALHDVFKNK 952
+ DI Y I L E+ A+ +
Sbjct: 1398 QGVLTTAREKSGNFPSPLLDIKYRRRQLELRRQQIKQWKESEYLYLQEEVAAIKSQRSEE 1457
Query: 953 TYNQ 956
Sbjct: 1458 DGPF 1461
Score = 83.1 bits (205), Expect = 4e-16
Identities = 25/134 (18%), Positives = 50/134 (37%), Gaps = 6/134 (4%)
Query: 915 KKSNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQ-KFCAITSNKSNIGHTFA 973
L +D+ HGT T D E + + K+ + K GH
Sbjct: 1508 ATWGLTIDDLGVASFHGTSTVANDKNESDVICQQLKHLGRTKGNAVLGIFQKYLTGHPKG 1567
Query: 974 ASGLVSLINLVQSIKYKIIPASLHCEKENNYIILKNSPFYINKSNKKWNTVNEKLRIGAV 1033
A+G L +Q + I+P + + + + + + Y ++S K + ++ +V
Sbjct: 1568 AAGAWMLNGCLQVLNTGIVPGNRNADNVDKVMEQFDYIVYPSRSIKT-----DGIKAFSV 1622
Query: 1034 SAFGMSGTNAHIVL 1047
++FG A +
Sbjct: 1623 TSFGFGQKGAQAIG 1636
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 88.3 bits (219), Expect = 4e-18
Identities = 32/182 (17%), Positives = 59/182 (32%), Gaps = 33/182 (18%)
Query: 236 GGTYLITGGTGRLGMLFSDYLINKYSTNLILSGRSKLNSIIYKKLKKFNN---------- 285
GT L+TG + L + +L+L + +
Sbjct: 251 DGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAEL 310
Query: 286 -----KAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAG------ISGLTSNILEAN 334
A + D++D + + + P+ VLH+ ++ ++ L
Sbjct: 311 ADLGATATVVTCDLTDAEAAARLLAGVSDA-HPLSAVLHLPPTVDSEPLAATDADALAR- 368
Query: 335 YKNFYSVLSSKISGTIALNYALENTILKLQKNKLD-FVCYFSSSSAILGDFGSCDYAMGN 393
V+++K + + L+ L + V FSS +AI G G YA G
Sbjct: 369 ------VVTAKATAALHLDRLLRE--AAAAGGRPPVLVL-FSSVAAIWGGAGQGAYAAGT 419
Query: 394 RF 395
F
Sbjct: 420 AF 421
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 88.1 bits (218), Expect = 1e-17
Identities = 26/152 (17%), Positives = 57/152 (37%), Gaps = 6/152 (3%)
Query: 897 GITAPNGISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQ 956
G + ++ L +D+ HGT TK D E ++++ K+ ++
Sbjct: 1509 GNDFYKRDPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMMKHLGRSE 1568
Query: 957 -KFCAITSNKSNIGHTFAASGLVSLINLVQSIKYKIIPASLHCEKENNYIILKNSPFYIN 1015
K GH A+G + +Q + IIP + + + + + Y +
Sbjct: 1569 GNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDKILEQFEYVLYPS 1628
Query: 1016 KSNKKWNTVNEKLRIGAVSAFGMSGTNAHIVL 1047
K+ K + +R ++++FG ++
Sbjct: 1629 KTLKT-----DGVRAVSITSFGFGQKGGQAIV 1655
Score = 88.1 bits (218), Expect = 1e-17
Identities = 48/331 (14%), Positives = 97/331 (29%), Gaps = 69/331 (20%)
Query: 700 FDPLFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQKIGMF-VGVEEGS--- 755
++ + IS ++DP +L A +G + + + VG GS
Sbjct: 1193 WNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMG 1252
Query: 756 -------NYQDRLDQVNLTSTH------NAILSARLAYFMDLKGPVMAINTACSSSLVAT 802
++DR + + N + + + GP+ AC++S+ +
Sbjct: 1253 GVSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGACATSVESV 1312
Query: 803 HIACQSLRQHECDTAISAGVNLMISPEAYIAMTSAG---M--LS-----------PDGKC 846
I +++ + I G + + S M S P
Sbjct: 1313 DIGVETILSGKARICIVGGY------DDFQEEGSFEFGNMKATSNTLEEFEHGRTPAEMS 1366
Query: 847 YVFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTNGITAP---NG 903
NG + ++ ++ + AL G PI+ I+ + D G + P G
Sbjct: 1367 RPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDK--IGRSVPAPGKG 1424
Query: 904 ISQT------------ELIKSVYKKSNLN----------PEDINYIITHGTGTKLGDPVE 941
I T + Y+K L ++ + D E
Sbjct: 1425 ILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNE 1484
Query: 942 INALHDVFKNKTYNQKFCAITSNKSNIGHTF 972
+N+ + + + G+ F
Sbjct: 1485 FLLERTRE---IHNEAESQLRAAQQQWGNDF 1512
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 85.9 bits (212), Expect = 5e-17
Identities = 77/389 (19%), Positives = 127/389 (32%), Gaps = 153/389 (39%)
Query: 637 GMSGR-----FPAARNINEFWKILINNKDVISEIPEKIFDWKLYYENPIKSSNKINSKWY 691
GM G AA+++ W N D + + Y
Sbjct: 1630 GM-GMDLYKTSKAAQDV---W----NRAD------------NHFKDT------------Y 1657
Query: 692 G-SIPGIDEFDP--LFFEISPLEAERMDPRQRHLLQESWLALEDAGYGPNQIANQKIGMF 748
G SI I +P L + +R+ R+ + A+ ++ +KI F
Sbjct: 1658 GFSILDIVINNPVNLTIHFGGEKGKRI--RENY------SAMIFETIVDGKLKTEKI--F 1707
Query: 749 VGV-EEGSNYQDRLDQVNLTSTHN---AILSARLAYFMDLK--GPVMAINTACSSSLVAT 802
+ E ++Y R ++ L++T A+ A F DLK G + A + A
Sbjct: 1708 KEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPA------DATFAG 1761
Query: 803 HIACQSLRQHECDTAISAGVNLMISPEAYIAMTS-AGMLSPDGKCYVFDERANGLVPSEA 861
H SL G E Y A+ S A ++S E+
Sbjct: 1762 H----SL-----------G-------E-YAALASLADVMS-------I----------ES 1781
Query: 862 VVAVVLKRLSRALSDGDPIHAIIRGSGINYDGKTN-GITA--PNGISQTELIKSVYKKSN 918
+V VV R + A+ R G++N G+ A P ++ +
Sbjct: 1782 LVEVVFYR-GMTMQ-----VAVPRDEL----GRSNYGMIAINPGRVAAS----------- 1820
Query: 919 LNPEDINYIITHGTGTKLGDPVEI-NALHDVFKNKTYN----QKFCAITSNKSNIGHTFA 973
+ E + Y++ G + G VEI N YN Q A G A
Sbjct: 1821 FSQEALQYVVE-RVGKRTGWLVEIVN----------YNVENQQYVAA--------GDLRA 1861
Query: 974 ASGLVSLINL--VQSIKYKIIPASLHCEK 1000
+ +++N +Q I + SL E+
Sbjct: 1862 LDTVTNVLNFIKLQKIDIIELQKSLSLEE 1890
Score = 64.7 bits (157), Expect = 2e-10
Identities = 101/568 (17%), Positives = 186/568 (32%), Gaps = 164/568 (28%)
Query: 536 DSISLAEFSRILS----KF-YSLDIMPSIFFSYSTL-ERLITYFIKNHNNTMIKFYRNKY 589
D+ S R L+ + L + + FF S L E+ F K
Sbjct: 2 DAYST----RPLTLSHGSLEHVLLVPTASFFIASQLQEQ----FNKI------------L 41
Query: 590 PLKTESKNISILYDNKINENYENVSKKSNFILNKNTDINSEELIAIIGMSGRFPAARNIN 649
P TE D++ E V K ++ + + ++ + +
Sbjct: 42 PEPTE----GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC--------LT 89
Query: 650 EFWKILINNKDV---ISEIPE-------KIFDW-KLYYE----NPIKSSNKINSKWYGSI 694
EF + D+ +++ + K + K Y K NS + ++
Sbjct: 90 EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 695 P-------------GIDE--FDPL-------------FFEIS----------PLEAERMD 716
G + F+ L + S L+AE++
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 717 PRQRHLLQESWLALEDAGYGPNQ--IANQKIGM-FVGVEEGSNYQDRLDQVNLT-STHNA 772
+ ++L+ W LE+ P++ + + I +GV + ++Y + T +
Sbjct: 210 TQGLNILE--W--LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRS 265
Query: 773 ILSARLAYFMDLKGPVMAINTACSSS----LVATHIACQSL-----RQHEC--DTAISAG 821
L + L V A+ A + S V+ A L R +E +T++
Sbjct: 266 YLKGATGHSQGL---VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 822 VNLMISPEAYIAMTSAGMLSPDG--KCYVFD--ERANGLVPSEAVVAVVLKRLSRALSDG 877
+ L S E + S MLS + V D + N +P+ V + +L +G
Sbjct: 323 I-LEDSLENNEGVPSP-MLSISNLTQEQVQDYVNKTNSHLPAGKQVEI-------SLVNG 373
Query: 878 DPIHAIIRGS-----GINYDGKTNGITAPNGISQTELI-----KSVYKKSNLNPEDINYI 927
+ ++ G G+N + AP+G+ Q+ I K + L P
Sbjct: 374 -AKNLVVSGPPQSLYGLNLTLR--KAKAPSGLDQSR-IPFSERKLKFSNRFL-P------ 422
Query: 928 IT---HGTGTKLGDPVEINALHDVFKNK-TYNQKFCAITSNKSNIGHTFAASGLVSL-IN 982
+ H + L P D+ KN ++N K I + TF S L L +
Sbjct: 423 VASPFH---SHLLVPASDLINKDLVKNNVSFNAKDIQIP-----VYDTFDGSDLRVLSGS 474
Query: 983 LVQSIKYKIIPASLHCEKENN----YII 1006
+ + I II + E +I+
Sbjct: 475 ISERIVDCIIRLPVKWETTTQFKATHIL 502
Score = 49.7 bits (118), Expect = 7e-06
Identities = 80/465 (17%), Positives = 149/465 (32%), Gaps = 149/465 (32%)
Query: 745 IGMFVGVEEGSNYQDRLDQVNLTSTHNAILSARLAYFMD--LKGPVMAINTACSSSLVAT 802
+G F+G Y L + + + +L+ L F + L+G I+ +L A
Sbjct: 61 VGKFLG------YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG--NDIH-----ALAA- 106
Query: 803 HIACQSLRQHECDTAISAGVNLMISPEAYI-AMTSAGMLSPDGKCYVFDERANGLVPSEA 861
L Q DT + L+ + YI A A P K S
Sbjct: 107 -----KLLQEN-DTTLVKTKELI---KNYITARIMAK--RPFDKKS----------NS-- 143
Query: 862 VVAVVLKRLSRALSDGD-PIHAIIRGSGIN--Y-DGKTNGITAPNGISQTELIKSVYKKS 917
L RA+ +G+ + AI G G Y + EL + +Y+
Sbjct: 144 -------ALFRAVGEGNAQLVAIFGGQGNTDDYFE---------------EL-RDLYQTY 180
Query: 918 NLNPEDINYIITHGTGTKLGDPVEINALHDVFKNKTYNQKFCAIT--SNKSNI-GHTFAA 974
++ D+ I L + + + K + Q + N SN +
Sbjct: 181 HVLVGDL--IKFSAE--TLSELIR----TTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 975 SGLVS--LINLVQSIKYKIIPASLHCEKENNYIILKNSPFYINKSNKKWNTVNEKLRIGA 1032
S +S LI ++Q Y + + +L +P + K ++ L + A
Sbjct: 233 SIPISCPLIGVIQLAHYVVT-----AK------LLGFTPGELRSYLKGATGHSQGL-VTA 280
Query: 1033 VSAFGMSGT------NAHIVL-----------QEYISTNF------KNIKNNTFISSNPY 1069
V A + + + + + Y +T+ +++NN P
Sbjct: 281 V-AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN---EGVPS 336
Query: 1070 HMVVLSAKTKISLKEKMKQILLFLRKNNTVCI------ENFVYT-----LMQGRHHFQYR 1118
M+ +S T+ +++ + + L V I +N V + L +
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 1119 CAIIISSIEEVVKIINDTLNSKEKI------L------HTNYLKG 1151
A S + +I S+ K+ L H++ L
Sbjct: 397 KA---PSGLDQSRI----PFSERKLKFSNRFLPVASPFHSHLLVP 434
Score = 45.4 bits (107), Expect = 1e-04
Identities = 84/563 (14%), Positives = 159/563 (28%), Gaps = 236/563 (41%)
Query: 17 PLI--------SLPISKVKKNNLLCFSS--NKDFQNKIVESISSYTDIIFIEQSDNIKIS 66
PL L + +S + F + E + +D+ +
Sbjct: 8 PLTLSHGSLEHVLLVP----TASFFIASQLQEQFNKILPEPTEGFA-------ADDEPTT 56
Query: 67 PNDTV----HY---KINKDNINDYTFILNKIYEKDKKIDSVFYLWPLEDKNCIYNIMPII 119
P + V Y + + + +LN + ++ + LE + I +
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL---TEFENCY----LEGND----IHALA 105
Query: 120 YFLQAVKKSKLYLRKLIISGISINKKNEEDLYYCYFNSWVAFERSLHIIMPETQISIVF- 178
L + L K +I Y + + +R + S +F
Sbjct: 106 AKLLQENDTTLVKTKELIK--------------NYITARIMAKRPF----DKKSNSALFR 147
Query: 179 ------AEKITNF----NIKNWINILFKELQEPKLFSIMYYG--NDLIR----------- 215
A+ + F N ++ F+EL++ L+ Y+ DLI+
Sbjct: 148 AVGEGNAQLVAIFGGQGNTDDY----FEELRD--LYQT-YHVLVGDLIKFSAETLSELIR 200
Query: 216 --------YQ--LNIKSIILK-------DFKNSY--------IKQGGTYLIT-------- 242
+ LNI + D+ S + Q Y++T
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260
Query: 243 --------GGTGRLGMLFS-----------DYLIN--KYSTNLILSG-RSKLNSIIYKKL 280
G TG L + + ++ K T L G R
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY--------- 311
Query: 281 KKFNNKAIYIQVDVSDKLK--------MIS-------EINSII---NNIGPIDGVLHIAG 322
+ + N ++ + + D L+ M+S ++ + N+ P + I+
Sbjct: 312 EAYPNTSLPPSI-LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 323 ISGLTSNILEANYKNFYSVLSSKISG-TIALNYALENTILKL-------Q------KNKL 368
++G KN V +SG +L Y L T+ K Q + KL
Sbjct: 371 VNG---------AKNL--V----VSGPPQSL-YGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 369 DFVCYF-------------SSSSAILGD-------FGSCDYAMGNRFQTVYAKYLNNKNI 408
F F +S I D F + D + VY + + ++
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI-----PVYDTF-DGSDL 468
Query: 409 YKKYTN------KLIT---INWP 422
+ I + W
Sbjct: 469 RVLSGSISERIVDCIIRLPVKWE 491
Score = 38.9 bits (90), Expect = 0.011
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 9/82 (10%)
Query: 471 VLSGELEKLNQIINNIAPKVSENKKINNFNIEKF---IENDIK--NHICNILNTKKSEIY 525
S E L ++ + + +I N+N+E D++ + + N+LN K +
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI 1877
Query: 526 KNKNLADYGFDSISLAEFSRIL 547
L S+SL E L
Sbjct: 1878 DIIELQ----KSLSLEEVEGHL 1895
Score = 33.9 bits (77), Expect = 0.39
Identities = 33/174 (18%), Positives = 64/174 (36%), Gaps = 55/174 (31%)
Query: 133 RKLIISGISINKKNEEDLYYCYFNSWVA--------------F-ERSLHIIM---PETQI 174
+ L++SG + LY N + F ER L P +
Sbjct: 375 KNLVVSG------PPQSLYG--LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP---V 423
Query: 175 SIVF--------AEKITNFNIKNWINILFKELQEPKLFSIMYYGNDLIRYQLNIKSIILK 226
+ F ++ I +KN ++ K++Q P ++ + G+DL +I I+
Sbjct: 424 ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP-VYDT-FDGSDLRVLSGSISERIVD 481
Query: 227 -------DFKNSYIKQGGTYLIT---GGTGRLGMLFSDYLINK--YSTNLILSG 268
++ + + T+++ GG LG+L NK +I++G
Sbjct: 482 CIIRLPVKWETT-TQFKATHILDFGPGGASGLGVLTHR---NKDGTGVRVIVAG 531
Score = 32.3 bits (73), Expect = 1.2
Identities = 51/295 (17%), Positives = 87/295 (29%), Gaps = 93/295 (31%)
Query: 132 LRKLIIS-GISINKKNE------EDLYYCYFNSWVAFERSLH-----IIMPETQISIV-- 177
R L +S G S+ E ++ F + L + +
Sbjct: 6 TRPLTLSHG-SL----EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 178 ---F----AEKITNFNIKNWINILFKELQEPKLFSIMY-YGND---------------LI 214
F + + + + +L L E F Y GND L+
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTE---FENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 215 RYQLNIKS-----IILKD----------FKNSYIKQGGTYLITGGTGRLGMLFSDYLINK 259
+ + IK+ I+ K F+ I GG G F + L +
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE-LRDL 176
Query: 260 YST------NLILSGRSKLNSIIYKKLKKFNNKAIYIQ-VDVSDKLKMISEINSIINNIG 312
Y T +LI L+ +I L + ++ Q +++ + L+ S
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDA---EKVFTQGLNILEWLENPSNT-------- 225
Query: 313 PIDGVLHIAGIS----GLTSNILEANYKNFYSV-------LSSKISGTIALNYAL 356
P L IS G+ L A+Y + L S + G + L
Sbjct: 226 PDKDYLLSIPISCPLIGVIQ--L-AHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces
nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Length = 496
Score = 82.8 bits (205), Expect = 2e-16
Identities = 36/169 (21%), Positives = 76/169 (44%), Gaps = 22/169 (13%)
Query: 236 GGTYLITGGTGRLGMLFSDYLINKYSTNLILSGRSKLNS----IIYKKLKKFNNKAIYIQ 291
G+ L+TGGTG +G + L + + +L+L+ R ++ + +L++ +
Sbjct: 239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAA 298
Query: 292 VDVSDKLKMISEINSIINNI---GPIDGVLHIAGISGLTSNILEANYKNFYSVLSSKISG 348
D +D+ + +++ + P+ V H AG++ + + + +++ +K++
Sbjct: 299 CDAADR----EALAALLAELPEDAPLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTA 354
Query: 349 TIALN-YALENTILKLQKNKLD-FVCYFSSSSAILGDFGSCDYAMGNRF 395
A + + L LD FV FSS +A+ G G YA N +
Sbjct: 355 --ARHLHEL------TADLDLDAFVL-FSSGAAVWGSGGQPGYAAANAY 394
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase,
oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora
erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Length = 486
Score = 80.5 bits (199), Expect = 9e-16
Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 23/169 (13%)
Query: 236 GGTYLITGGTGRLGMLFSDYLINKYSTNLILSGRSKLNS----IIYKKLKKFNNKAIYIQ 291
GT L+TGGTG +G + +L + + +L+L RS ++ + +L+ +
Sbjct: 226 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAA 285
Query: 292 VDVSDKLKMISEINSIINNIG---PIDGVLHIAGISGLTSNILEANYKNFYSVLSSKISG 348
DV+D+ + ++ IG P+ V H A + + + +K+ G
Sbjct: 286 CDVTDR----ESVRELLGGIGDDVPLSAVFHAAATLDDGT-VDTLTGERIERASRAKVLG 340
Query: 349 TIALN-YALENTILKLQKNKLD-FVCYFSSSSAILGDFGSCDYAMGNRF 395
A N + L ++ L FV FSS ++ G G YA GN +
Sbjct: 341 --ARNLHEL------TRELDLTAFVL-FSSFASAFGAPGLGGYAPGNAY 380
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 81.1 bits (199), Expect = 2e-15
Identities = 109/668 (16%), Positives = 232/668 (34%), Gaps = 183/668 (27%)
Query: 36 SNKD----FQNKIVES-----ISSYTDIIFI-EQSDNIKISPNDTVH-YKI------NKD 78
KD F++ V++ + I E+ D+I +S + ++ ++
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 79 NI----------NDYTFILNKIYE--KDKKIDSVFYLWPLEDKNCIYNIMPII--YF--- 121
+ +Y F+++ I + + + Y +E ++ +YN + Y
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY---IEQRDRLYNDNQVFAKYNVSR 133
Query: 122 LQAVKKSKLYLRKL-----II------SGISI-------NKKNEEDLYYCYFNSWVAF-- 161
LQ K + L +L ++ SG + + K + + + F W+
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF--WLNLKN 191
Query: 162 --ERSLHIIMPET---QISIVFAEKITN-FNIKNWINILFKELQEPKLFSIMYYGNDLIR 215
+ M + QI + + + NIK I+ + EL+ +L Y N L
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR--RLLKSKPYENCL-- 247
Query: 216 YQLNIKSIILKDFKNSYIKQ----GGTYLITGGTGRLGMLFSDYLINKYSTNLILSGRSK 271
++L + +N+ L+T T + +D+L +T++ L S
Sbjct: 248 -------LVLLNVQNAKAWNAFNLSCKILLT--TRFKQV--TDFLSAATTTHISLDHHSM 296
Query: 272 LNSIIYKKLKKFNNKAI---YIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISGLTS 328
L K++ Y+ D L E+ + P ++ I+
Sbjct: 297 T-------LTPDEVKSLLLKYLDCRPQD-LP--REVLT----TNP----RRLSIIAESIR 338
Query: 329 NILEANYKNFYSVLSSKISGTIALNY-ALENTILKLQKNKLDFVCYFSSSSAILGDFGSC 387
+ L A + N+ V K++ I + LE + +
Sbjct: 339 DGL-ATWDNWKHVNCDKLTTIIESSLNVLEPAEYR--------KMFD------------- 376
Query: 388 DYAMGNRFQTVYAKYLNNKNIYKKYTNKLITINWPLWNNSKFKIGNNEQTDFYFKSSKQK 447
++ F + +I L+++ +W + ++ K K
Sbjct: 377 RLSV---FP-------PSAHI----PTILLSL---IWFDVIK----SDVMVVVNKLHKYS 415
Query: 448 VLHENDGLKLFEQLLIQDKIQYLVLSGELEKL----NQIIN--NIAPKVSENKKINNFNI 501
++ + I YL L +LE I++ NI PK ++ + +
Sbjct: 416 LVEKQPKESTIS---IPS--IYLELKVKLENEYALHRSIVDHYNI-PKTFDSDDLIPPYL 469
Query: 502 EKFIENDIKNHICNILNTKKSEIYKNKNLADYGF-------DSISLAEFSRILS-----K 549
+++ + I +H+ NI + ++ +++ L D+ F DS + IL+ K
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFL-DFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 550 FYSLDIMPSIFFSYSTLERLITYFIKNHNNTMIKFYRNKYPLKTESKNISILYDNK--IN 607
FY I + Y L I F+ +I +KY T+ I+++ +++
Sbjct: 529 FYKPYICDND-PKYERLVNAILDFLPKIEENLI---CSKY---TDLLRIALMAEDEAIFE 581
Query: 608 ENYENVSK 615
E ++ V +
Sbjct: 582 EAHKQVQR 589
Score = 62.2 bits (150), Expect = 8e-10
Identities = 102/735 (13%), Positives = 208/735 (28%), Gaps = 260/735 (35%)
Query: 493 NKKINNFNIEKFIENDIKNHICNILNTKKSEIYKNKNLADYGFDSISLAEFSRILSKFYS 552
K I + F + + N C K++ D +S E I+
Sbjct: 18 YKDI----LSVFEDAFVDNFDC-------------KDVQDMPKSILSKEEIDHII----- 55
Query: 553 LDIMPSIFFSYSTLERLITYFIKNHNNTMIKFY----RNKY-----PLKTESKN---ISI 600
+ + S RL + + KF R Y P+KTE + ++
Sbjct: 56 --MSKD---AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 601 LYDNKINENYE--------NVSKKSNFI-LNKN-TDINSEELIAIIGMSG---------- 640
+Y + + Y NVS+ ++ L + ++ + + I G+ G
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 641 ----RFPAARNINEFWKILINNKDVISEIPEKIFDWKLYYENPIKSSNKINSKWYGSIPG 696
+ + FW + + N + + E + KL Y +I+ W
Sbjct: 171 CLSYKVQCKMDFKIFW-LNLKNCNSPETVLEML--QKLLY--------QIDPNW---TSR 216
Query: 697 IDEFDPLFFEISPLEAERMDPRQRHLLQE-----SWLALEDAGYGPNQIANQK-IGMFVG 750
D + L + R LL+ L L + + N K F
Sbjct: 217 SDHSSNI-----KLRIHSIQAELRRLLKSKPYENCLLVLLN-------VQNAKAWNAF-- 262
Query: 751 VEEGSNYQDRLDQVNLTSTHNA----ILSARLAYFMDLKGPVMAINTACSSSLVA--THI 804
N ++ L +T LSA + L M + SL+
Sbjct: 263 -----NLSCKI----LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 805 ACQSLRQHECDTAISAGVNLMISPEAYIAMTSAGM------------------------- 839
Q L + +P +++ + +
Sbjct: 314 RPQDLPREVLT----------TNPRR-LSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 840 ---LSPDG--KCY----VFDERANGLVPSEAVVAVVLKRLSRALSDGDPIHAIIRGSGIN 890
L P K + VF A+ +P+ +L + + D +
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAH--IPTI-----LLSLIWFDVIKSDVM---------- 405
Query: 891 YDGKTNGITAPNGISQTELIKSVYKKS--NLNPEDINYIITHGTGTKLGDPVEIN-ALHD 947
++ ++K S P++ I +L +E ALH
Sbjct: 406 -----------------VVVNKLHKYSLVEKQPKESTISI-PSIYLELKVKLENEYALHR 447
Query: 948 VFKNKTYN--QKFCAITSNKSNI-GHTFAASGLVSLINLVQSIKYKIIPASLHCEKENNY 1004
+ YN + F + + + + I + H + +
Sbjct: 448 SIVDH-YNIPKTFDSDDLIPPYLDQYFY------------SHIGH-------HLKNIEHP 487
Query: 1005 IILKNSPF---YINKSNKKWNTVNEKLRIGAVSAFGMSGTNAHIVLQEYISTNFKNIKNN 1061
+ + F +++ ++ + +K+R +A+ SG+ + + Q K K
Sbjct: 488 --ERMTLFRMVFLDF---RF--LEQKIR-HDSTAWNASGSILNTLQQ------LKFYKPY 533
Query: 1062 TFISSNPYHMVVLSAKTKISLKEKMKQILLFLRKNNTVCIENFVYTLMQGRHHFQYRCAI 1121
+ Y +V + I +F+ + + +Y +
Sbjct: 534 ICDNDPKYERLVNA-------------------------ILDFLPKIEENLICSKYTDLL 568
Query: 1122 IISSIEEVVKIINDT 1136
I+ + E I +
Sbjct: 569 RIALMAEDEAIFEEA 583
Score = 54.5 bits (130), Expect = 2e-07
Identities = 52/320 (16%), Positives = 92/320 (28%), Gaps = 88/320 (27%)
Query: 13 WVKSPLISLPISKVKKNNLLCFSSNKDFQNKIVESISSYTDIIFIEQSDNIKISPNDTVH 72
++ LP + N + I ESI DN K D +
Sbjct: 310 YLDCRPQDLPREVLTTNPRRL--------SIIAESIRDGLATW-----DNWKHVNCDKLT 356
Query: 73 YKINKDNINDYTFILNK-------IYEKDKKIDSVFY--LWPLEDKNCIYNIM------- 116
I + ++N + ++ I ++ +W K+ + ++
Sbjct: 357 -TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 117 -------------PIIYFLQAVKKSKLY-LRKLIISGISINKK--------NEEDLYYCY 154
P IY VK Y L + I+ +I K D Y+
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 155 FNSWVAFERSLHIIMPE-TQISIVFAEKITNFNIKNWINILFKELQEPKLFSIMYYGNDL 213
+ H+ E + +F +F ++ E K+ N
Sbjct: 476 H---IGH----HLKNIEHPERMTLFRMVFLDF---RFL--------EQKIRHDSTAWNA- 516
Query: 214 IRYQLNIKSIILKDFKNSYIKQGGTYLITGGTGRLGMLFSDYL--INKYSTNLILSGRSK 271
LN L+ K Y I + L + L + K NLI SK
Sbjct: 517 SGSILN----TLQQLKF-YKPY-----ICDNDPKYERLVNAILDFLPKIEENLI---CSK 563
Query: 272 LNSIIYKKLKKFNNKAIYIQ 291
++ L ++AI+ +
Sbjct: 564 YTDLLRIAL-MAEDEAIFEE 582
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 77.5 bits (191), Expect = 8e-15
Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 18/164 (10%)
Query: 237 GTYLITGGTGRLGMLFSDYLINKYSTNLILSGRSKLNS----IIYKKLKKFNNKAIYIQV 292
GT LITGG G +G + L + + L+L+ R + + ++L+ + ++
Sbjct: 260 GTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAAC 319
Query: 293 DVSDKLKMISEINSIINNIGPIDGVLHIAGISGLTSNILEANYKNFYSVLSSKISGTIAL 352
DV+++ + + + + P + V H AGI I + ++F +V +K+ G L
Sbjct: 320 DVAERDALAALVTAY-----PPNAVFHTAGILDDAV-IDTLSPESFETVRGAKVCGAELL 373
Query: 353 NYALENTILKLQKNKLD-FVCYFSSSSAILGDFGSCDYAMGNRF 395
+ + LD FV FSS + G+ G YA N
Sbjct: 374 HQLTADI------KGLDAFVL-FSSVTGTWGNAGQGAYAAANAA 410
>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR
{Pseudomonas fluorescens}
Length = 212
Score = 59.9 bits (145), Expect = 5e-10
Identities = 13/68 (19%), Positives = 33/68 (48%)
Query: 505 IENDIKNHICNILNTKKSEIYKNKNLADYGFDSISLAEFSRILSKFYSLDIMPSIFFSYS 564
I++ +K + +L ++ D G DS++ ++ R +S+ +S+ + +++
Sbjct: 131 IQDYLKQSLGELLFLDPGQLRSGAQFLDLGMDSVTGTQWMRGVSRHFSIQLAADAIYTWP 190
Query: 565 TLERLITY 572
TL+ L
Sbjct: 191 TLKSLADE 198
Score = 56.9 bits (137), Expect = 5e-09
Identities = 12/69 (17%), Positives = 28/69 (40%)
Query: 505 IENDIKNHICNILNTKKSEIYKNKNLADYGFDSISLAEFSRILSKFYSLDIMPSIFFSYS 564
++ + +L + +I + G DS+ A++ R ++K Y L I ++Y
Sbjct: 27 CAQFLRQSLAAMLYCEPGQIRDGSRFLELGLDSVIAAQWIREINKHYQLKIPADGIYTYP 86
Query: 565 TLERLITYF 573
+ +
Sbjct: 87 VFKAFTQWV 95
>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier
protein FA structural genomics, PSI, protein structure
initiative; NMR {Nostoc SP} PDB: 2afe_A
Length = 88
Score = 55.1 bits (133), Expect = 1e-09
Identities = 12/73 (16%), Positives = 31/73 (42%)
Query: 505 IENDIKNHICNILNTKKSEIYKNKNLADYGFDSISLAEFSRILSKFYSLDIMPSIFFSYS 564
I++ + + L+ +I ++ +Y +S L K+ ++ P + F+Y
Sbjct: 15 IQSWLIDQFAQQLDVDPDDIDMEESFDNYDLNSSKALILLGRLEKWLGKELNPVLIFNYP 74
Query: 565 TLERLITYFIKNH 577
T+ +L + +
Sbjct: 75 TIAQLAKRLGELY 87
>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier
protein, holo, phosphopantetheine, transport protein;
HET: PNS; NMR {Aspergillus parasiticus}
Length = 89
Score = 51.4 bits (123), Expect = 2e-08
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 505 IENDIKNHICNILNTKKSEIYKNKNLADYGFDSISLAEFSRILSKFYSLDIMP--SIFFS 562
+ + + E+ + N AD G DS+S + LD+ P S+F
Sbjct: 12 KLDAVMRVVSEESGIALEELTDDSNFADMGIDSLSSMVIGSRFREDLGLDLGPEFSLFID 71
Query: 563 YSTLERLITYFIKNHNN 579
+T+ L + + + +
Sbjct: 72 CTTVRALKDFMLGSGDA 88
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 47.7 bits (114), Expect = 1e-05
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 32/146 (21%)
Query: 240 LITGGTGRLGMLFSDYLINKY-STNLILSGRSKLNSIIYKKLKKFNNKAIYIQVDVSDKL 298
L+TG +G++G YL KY N+I S + ++ K +I +DVS++
Sbjct: 3 LVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIK----------FITLDVSNR- 51
Query: 299 KMISEINSIINNIGPIDGVLHIAGISGLTSNILEANYKNFYSVLSSKISGTIA-LNYALE 357
EI+ + ID + H+AGI E + Y V ++GT L A +
Sbjct: 52 ---DEIDRAVEKYS-IDAIFHLAGILSAKG---EKDPALAYKVN---MNGTYNILEAAKQ 101
Query: 358 NTILKLQKNKLDFVCYFSSSSAILGD 383
+ + K+ S+ + G
Sbjct: 102 HRVEKV---------VIPSTIGVFGP 118
>2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A*
Length = 99
Score = 43.5 bits (103), Expect = 2e-05
Identities = 19/64 (29%), Positives = 36/64 (56%)
Query: 509 IKNHICNILNTKKSEIYKNKNLADYGFDSISLAEFSRILSKFYSLDIMPSIFFSYSTLER 568
+K + L T++SEI +++ D G DSI E++ +++ Y+L++ + + Y TL
Sbjct: 26 LKQQLAEALYTEESEIAEDQKFVDLGLDSIVGVEWTTTINQTYNLNLKATKLYDYPTLLE 85
Query: 569 LITY 572
L Y
Sbjct: 86 LSGY 89
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 43.4 bits (103), Expect = 2e-04
Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 29/147 (19%)
Query: 239 YLITGGTGRLGMLFSDYLINKY-STNLILSGRSKLNSIIYKKLKKFNNKAIYIQVDVSDK 297
LI G G++G + L Y + N+I S KLN N + V+ D
Sbjct: 5 ILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLN-------TDVVNSGPFEVVNALDF 57
Query: 298 LKMISEINSIINNIGPIDGVLHIAGISGLTSNILEANYKNFYSVLSSKISGTI-ALNYAL 356
++I ++ I + +A + T+ KN ++ LN A
Sbjct: 58 ----NQIEHLVEVHK-ITDIYLMAALLSATAE------KNPAFAWDLNMNSLFHVLNLAK 106
Query: 357 ENTILKLQKNKLDFVCYFSSSSAILGD 383
I K+ ++ SS A+ G
Sbjct: 107 AKKIKKI---------FWPSSIAVFGP 124
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 43.1 bits (102), Expect = 4e-04
Identities = 30/163 (18%), Positives = 53/163 (32%), Gaps = 31/163 (19%)
Query: 229 KNSYIKQGGTYLITGGTGRLGMLFSDYLINKYS------TNLILSGRSKLNSIIYKKLKK 282
+N Y QG I G G +G + L+ S L +
Sbjct: 8 ENLYF-QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDV-----FQPEAPAG 61
Query: 283 FNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISGLTSNILEANYKNFYSVL 342
F+ D+S E ++ D + H+A I + E ++ Y +
Sbjct: 62 FSGAVDARAADLSAP----GEAEKLVEA--RPDVIFHLAAIVSGEA---ELDFDKGYRI- 111
Query: 343 SSKISGTIALNYALENTILKLQKNKLDFVC--YFSSSSAILGD 383
+ GT L + +++ K + F+SS A+ G
Sbjct: 112 --NLDGTRYL---FD--AIRIANGKDGYKPRVVFTSSIAVFGA 147
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 41.6 bits (98), Expect = 8e-04
Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 39/151 (25%)
Query: 238 TYLITGGTGRLGMLFSDYLINKYSTNLILSGRSKLNSIIYKKLKKFNNKAIYIQVDVSDK 297
L+TG G+LG + + L L L+ S L+ +Q D++D
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMAEI-LRLADLSPLDPA--------GPNEECVQCDLADA 55
Query: 298 LKMISEINSIINNIGPIDGVLHIAGISGLTS--NILEANYKNFYSVLSSKISGTIA-LNY 354
+ +N+++ DG++H+ GIS IL+ N I G
Sbjct: 56 ----NAVNAMVAG---CDGIVHLGGISVEKPFEQILQGN-----------IIGLYNLYEA 97
Query: 355 ALENTILKLQKNKLDFVCYFSSSSAILGDFG 385
A + + V F+SS+ +G +
Sbjct: 98 ARAHGQPR-------IV--FASSNHTIGYYP 119
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 39.2 bits (92), Expect = 0.004
Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 7/108 (6%)
Query: 285 NKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISGLTSNILEANYKNFYSVLSS 344
N + S + ++ S I I + +D + AG + + K+ ++
Sbjct: 59 NADHSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDM 118
Query: 345 KISGT-IALNYALENTILKLQKNKLDFVCYFSSSSAILGDFGSCDYAM 391
+ + + + L + L +S+A+ G Y
Sbjct: 119 NLYSAFASAHIGAK----LLNQGGL--FVLTGASAALNRTSGMIAYGA 160
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A
4amp_A 4amo_A
Length = 401
Score = 40.0 bits (94), Expect = 0.004
Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 1070 HMVVLSAKTKISLKEKMKQILLFLRKNNTVCIENFVYTL-MQGRHHFQYRCAIIISSIEE 1128
+VV A +L + ++ + + + L R R A + +
Sbjct: 4 ELVVCGAPDAAALTGLLTRVRAAATALSRPELTDLAAGLAAAHRGDVPARFAAAVRDADG 63
Query: 1129 VV 1130
+V
Sbjct: 64 LV 65
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 39.2 bits (92), Expect = 0.005
Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 37/148 (25%)
Query: 238 TYLITGGTGRLGMLFSDYLINKYSTNLILSGRSKLNSIIYKKLKKFNNKAIYIQVDVSDK 297
L+TG G +G +L + L + D++D
Sbjct: 4 RLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVD---------LGAAEAHEEIVACDLADA 54
Query: 298 LKMISEINSIINNIGPIDGVLHIAGISGLTS--NILEANYKNFYSVLSSKISGTIALNYA 355
++ + + DG++H+ G+S +IL+AN Y++ + A
Sbjct: 55 -------QAVHDLVKDCDGIIHLGGVSVERPWNDILQANIIGAYNLYEA----------A 97
Query: 356 LENTILKLQKNKLDFVCYFSSSSAILGD 383
+ V F+SS+ +G
Sbjct: 98 RNLGKPR-------IV--FASSNHTIGY 116
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 38.9 bits (91), Expect = 0.007
Identities = 20/110 (18%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Query: 238 TYLITGGTGRLGMLFSDYLINKYST--NLILSGRSKLNSIIYKKLKKFNNKAIYIQVDVS 295
+ LITG LG+ L+N +L + R++ + + L K ++ +++D+
Sbjct: 23 SILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLR 82
Query: 296 DK---LKMISEINSIINNIGPIDGVLHIAGISGLTSNILEANYKNFYSVL 342
+ K++++I + + ++ + + AGI+ ++ I + L
Sbjct: 83 NFDAYDKLVADIEGVTKD-QGLNVLFNNAGIAPKSARITAVRSQELLDTL 131
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 38.7 bits (91), Expect = 0.007
Identities = 22/117 (18%), Positives = 48/117 (41%), Gaps = 15/117 (12%)
Query: 235 QGGTYLITG---GTGR-LGMLFSDYLINKYSTNLILSGRS--KLNSIIYKKLKKFNNKAI 288
+G L+TG G G ++ + +++L GR+ L + ++K
Sbjct: 13 KGRVILVTGAARGIGAAAARAYA-----AHGASVVLLGRTEASLAEV-SDQIKSAGQPQP 66
Query: 289 YI---QVDVSDKLKMISEINSIINNIGPIDGVLHIAGISGLTSNILEANYKNFYSVL 342
I ++ + + + + G +DG+LH A I G + + + ++F V+
Sbjct: 67 LIIALNLENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVM 123
>3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A
{Curcuma longa} PDB: 3ov3_A
Length = 393
Score = 38.3 bits (89), Expect = 0.014
Identities = 36/279 (12%), Positives = 77/279 (27%), Gaps = 65/279 (23%)
Query: 689 KWYGSIPGIDEFDPLFFEISPLEAERMDPRQRH---LLQE-SWLALEDAGYGPNQIANQK 744
+ P + + F+ +R D L +E + A+++ G +
Sbjct: 75 EILKERPKLCSYKEASFD------DRQDIVVEEIPRLAKEAAEKAIKEWGRPK-----SE 123
Query: 745 IGMFVGVEEGSNYQDRLDQVNLTSTHNAI--LSARLAYFMDLKGPV---MAINTACSSSL 799
I V + + + RLA + L V M + AC
Sbjct: 124 ITHLVFC---------------SISGIDMPGADYRLATLLGLPLTVNRLMIYSQACHMGA 168
Query: 800 VATHIACQSLRQHECDTAISAGVNLMISPEAYIAMTSAGMLSPDGK-------CYVFDER 852
IA + L+++ E +T P+ F +
Sbjct: 169 AMLRIAKDLAENNRGARV------LVVACE----ITVLSFRGPNEGDFEALAGQAGFGDG 218
Query: 853 ANGLVPSEAVVAVVLKRLSRALSDG-----DPIHAI---IRGSGINYDGKTNGITAPNGI 904
A +V + + K + + + A+ +R G + P I
Sbjct: 219 AGAVVVGADPLEGIEKPIYEIAAAMQETVAESQGAVGGHLRAFGWTF---YFLNQLPAII 275
Query: 905 SQT--ELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVE 941
+ ++ + + + + H + D +E
Sbjct: 276 ADNLGRSLERALAPLGVREWNDVFWVAHPGNWAIIDAIE 314
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 37.5 bits (88), Expect = 0.018
Identities = 13/66 (19%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 263 NLILSGR--SKLNSIIYKKLKKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHI 320
++L R +++ +I +++ A+ +DV+D+ + + + ++ G ID +++
Sbjct: 30 KILLGARRQARIEAIA-TEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNN 88
Query: 321 AGISGL 326
AG+ L
Sbjct: 89 AGVMPL 94
>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS,
coenzyme A, thiolase fold, condensing enzyme; HET: HMG
CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2
c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A*
Length = 396
Score = 37.9 bits (88), Expect = 0.018
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 2/85 (2%)
Query: 908 ELIKSVYKKSNLNPEDINYIITHGTGTKLGDPV--EINALHDVFKNKTYNQKFCAITSNK 965
+ K+ + D + H TK+G I D + +
Sbjct: 211 QSWNEYAKRQGKSLADFASLCFHVPFTKMGKKALESIIDNADETTQERLRSGYEDAVDYN 270
Query: 966 SNIGHTFAASGLVSLINLVQSIKYK 990
+G+ + S +SLI+L+++ +
Sbjct: 271 RYVGNIYTGSLYLSLISLLENRDLQ 295
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 37.1 bits (87), Expect = 0.018
Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 263 NLILSGR--SKLNSIIYKKLKKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHI 320
+ ++ R KL ++ +L K +++DV+D+ + + + S + +G +D +++
Sbjct: 33 AVAIAARRVEKLRALG-DELTAAGAKVHVLELDVADRQGVDAAVASTVEALGGLDILVNN 91
Query: 321 AGISGLT 327
AGI L
Sbjct: 92 AGIMLLG 98
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 37.2 bits (87), Expect = 0.020
Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 19/116 (16%)
Query: 240 LITG---GTGR-LGMLFSDYLINKYSTNLILSGRSK-LNSIIYKKLKKFNNKAIYIQVDV 294
LITG G GR F+ K + L+L +K K K K VD
Sbjct: 35 LITGAGHGIGRLTAYEFA-----KLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDC 89
Query: 295 SDKLKMISEINSIINNIGPIDGVLHIAGISGLTSNILEANYK--------NFYSVL 342
S++ + S + IG + +++ AG+ TS++ N +
Sbjct: 90 SNREDIYSSAKKVKAEIGDVSILVNNAGV-VYTSDLFATQDPQIEKTFEVNVLAHF 144
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 37.3 bits (87), Expect = 0.022
Identities = 19/153 (12%), Positives = 50/153 (32%), Gaps = 11/153 (7%)
Query: 240 LITGGTGRLGMLFSDYLINKYSTNLILSGRS-KLNSIIYKKLKKFNNKAIYIQVDVSDKL 298
+ G +G+ S L+ + N ++ R ++ K + DV+ +
Sbjct: 9 IFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPV 68
Query: 299 KMISE-INSIINNIGPIDGVLHIAGISGLTSNILEANYKNFYSVLSSKISGTIALNYALE 357
+ + I + + +D +++ AGI + ++ +G + A+
Sbjct: 69 AESKKLLKKIFDQLKTVDILINGAGI---------LDDHQIERTIAINFTGLVNTTTAIL 119
Query: 358 NTILKLQKNKLDFVCYFSSSSAILGDFGSCDYA 390
+ K + + S + Y+
Sbjct: 120 DFWDKRKGGPGGIIANICSVTGFNAIHQVPVYS 152
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution
structure, dynamics, ACP, biosynthetic protein; NMR
{Streptomyces rimosus} SCOP: a.28.1.1
Length = 95
Score = 34.9 bits (80), Expect = 0.024
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 530 LADYGFDSISLAEFSRILSKFYSLDIMPSIFFSYSTLERLITY 572
G+DS++L + + Y + + +T LI
Sbjct: 34 FDALGYDSLALLNTVGRIERDYGVQLGDDAVEKATTPRALIEM 76
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
avium}
Length = 407
Score = 37.5 bits (88), Expect = 0.025
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 771 NAILSARLAYFMDLKGPVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLMISPEA 830
A+L+A L + +N C+S L A + A Q +R D ++ GV M +
Sbjct: 76 TAVLAAGL----PETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVESM----S 127
Query: 831 YIAMTSAGM 839
+ M S G
Sbjct: 128 RVPMGSDGG 136
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty
acid metabolism, oxylipin biosynthesis, plant lipid
metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A
2c7z_A 2wua_A
Length = 442
Score = 37.2 bits (87), Expect = 0.028
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 787 PVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLM 825
V +N CSS L A +++ D I AG+ M
Sbjct: 110 AVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESM 148
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 36.3 bits (85), Expect = 0.037
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 15/112 (13%)
Query: 240 LITGGTGRLG----MLFSDYLINKYSTNLILSGRS--KLNSIIYKKLKKFNNKA---IYI 290
L+TG + +G M ++ +Y +IL GR+ KL + + + + +
Sbjct: 16 LVTGASDGIGREAAMTYA-----RYGATVILLGRNEEKLRQV-ASHINEETGRQPQWFIL 69
Query: 291 QVDVSDKLKMISEINSIINNIGPIDGVLHIAGISGLTSNILEANYKNFYSVL 342
+ I N +DGVLH AG+ G + E N + + V+
Sbjct: 70 DLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVM 121
>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid,
IDP01071, acyltransferase, cytoplasm, fatty acid
metabolism; 1.70A {Salmonella typhimurium}
Length = 387
Score = 36.7 bits (86), Expect = 0.038
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 787 PVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLM 825
P + +N C SS+ A H A + + + + GV M
Sbjct: 83 PAVTVNRLCGSSMQALHDAARMIMTGDAQVCLVGGVEHM 121
>2cg5_B Fatty acid synthase; transferase-hydrolase complex,
transferase/hydrolase (comple fatty acid biosynthesis,
phosphopantetheine transferase; HET: COA; 2.7A {Homo
sapiens} PDB: 2png_A
Length = 91
Score = 33.9 bits (77), Expect = 0.044
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 508 DIKNHICNILNTKK-SEIYKNKNLADYGFDSISLAEFSRILSKFYSLDIMPSIFFSYSTL 566
D+ + +IL + + + + +LAD G D++ E + L + +L + TL
Sbjct: 10 DLVEAVAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTLERELNLVLSVREVRQL-TL 68
Query: 567 ERL 569
+L
Sbjct: 69 RKL 71
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 36.5 bits (85), Expect = 0.044
Identities = 13/96 (13%), Positives = 34/96 (35%), Gaps = 3/96 (3%)
Query: 263 NLILSGRS--KLNSIIYKKLKKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHI 320
+++++ RS L ++ L+ A YI + D + +G +D ++
Sbjct: 54 HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILN 113
Query: 321 AGISGLTSNILEANYKNFYSVLSSKISGTIALNYAL 356
+ + N+ + + + + L A
Sbjct: 114 HITN-TSLNLFHDDIHHVRKSMEVNFLSYVVLTVAA 148
>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo,
polyketide synthase, PKS, biosynthetic protein; NMR
{Streptomyces roseofulvus} SCOP: a.28.1.1
Length = 83
Score = 33.3 bits (76), Expect = 0.057
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 527 NKNLADYGFDSISLAEFSRILSKFYSLDIMPSIFFSYSTLERLITY 572
+ D G+DS++L E + +L + Y + + T L+
Sbjct: 30 DTPFVDLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDE 75
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 35.7 bits (83), Expect = 0.057
Identities = 21/166 (12%), Positives = 56/166 (33%), Gaps = 21/166 (12%)
Query: 235 QGGTYLITG---GTGR-LGMLFSD--YLINKYSTNLILSGRS--KLNSIIYKKLKKFNNK 286
+ T + G G + F+ + + R+ KL ++ +++ +
Sbjct: 6 RNATVAVIGAGDYIGAEIAKKFAAEGF-------TVFAGRRNGEKLAPLV-AEIEAAGGR 57
Query: 287 AIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISGLTSNILEANYKNFYSVLSSKI 346
+ +D ++ ++ + + P++ + G + ILE + F V
Sbjct: 58 IVARSLDARNE-DEVTAFLNAADAHAPLEVTIFNVGA-NVNFPILETTDRVFRKVWEMAC 115
Query: 347 SGTIALNYALENTILKLQKNKLDFVCYFSSSSAILGDFGSCDYAMG 392
+L + K+ F +++++ G G +A
Sbjct: 116 WAGFVSGRESARLMLAHGQGKIFFT---GATASLRGGSGFAAFASA 158
>3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase,
nitrosylation, transfera inhibitor complex; HET: BTB;
1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A
1ysl_B* 1ysl_A* 2hdb_A*
Length = 388
Score = 36.1 bits (83), Expect = 0.059
Identities = 13/81 (16%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 908 ELIKSVYKKSNLNPEDINYIITHGTGTKLGDPVEINALHDVFK--NKTYNQKFCAITSNK 965
++ K++ L+ D + + H TK+G + + D + + ++
Sbjct: 216 QVWDEHKKRTGLDFADYDALAFHIPYTKMGKKALLAKISDQTEAEQERILARYEESIIYS 275
Query: 966 SNIGHTFAASGLVSLINLVQS 986
+G+ + S + LI+L+++
Sbjct: 276 RRVGNLYTGSLYLGLISLLEN 296
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 35.6 bits (83), Expect = 0.061
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 263 NLILSGRS--KLNSIIYKKLKKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHI 320
L L RS +L I ++ +++ + Y +DVS + ++ G +D V+
Sbjct: 28 ALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGDVDVVVAN 87
Query: 321 AGISGLTSNILEAN 334
AG+ G + E +
Sbjct: 88 AGL-GYFKRLEELS 100
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier
protein, solution STR antibiotic biosynthesis; NMR
{Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A
2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A*
2kgd_A* 2kge_A*
Length = 86
Score = 33.3 bits (76), Expect = 0.068
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 530 LADYGFDSISLAEFSRILSKFYSLDIMPSIFFSYSTLERLITY 572
D G+DS++L E + L Y + I + T L+
Sbjct: 35 FEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDL 77
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism,
structural genomics, structural genom consortium, SGC,
transferase; 2.55A {Homo sapiens}
Length = 418
Score = 36.0 bits (84), Expect = 0.068
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 787 PVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLM 825
P+ +N CSS L A +R D ++ GV M
Sbjct: 109 PLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESM 147
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 35.6 bits (83), Expect = 0.079
Identities = 23/115 (20%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Query: 278 KKLKKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISGLT-SNILEANYK 336
+L + I+++ D++D + +++++ G ID +++ AGI+ + + L+ +
Sbjct: 72 AELSGLGARVIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPE 131
Query: 337 NFYSVLSSKISGTIALNYALENTILKLQKNKLDFVCYFSSSSAILGDFGSCDYAM 391
NF +++ + GT+ A+ +L + +S SA++ DY M
Sbjct: 132 NFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTSPERLDYCM 186
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 35.3 bits (82), Expect = 0.081
Identities = 6/45 (13%), Positives = 18/45 (40%)
Query: 281 KKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISG 325
+ + DV+++ + + G + G+++ AG +
Sbjct: 49 AELGAAVRFRNADVTNEADATAALAFAKQEFGHVHGLVNCAGTAP 93
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 35.3 bits (82), Expect = 0.084
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 281 KKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISG 325
KK N ++ DV+ + + + + G +D ++ AGI+
Sbjct: 54 KKLGNNCVFAPADVTSEKDVQTALALAKGKFGRVDVAVNCAGIAV 98
>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A
{Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB:
1pxt_A
Length = 393
Score = 35.6 bits (83), Expect = 0.086
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 787 PVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLM 825
P +A+N CSS L A + ++ + D ++ GV M
Sbjct: 93 PFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESM 131
>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex,
lyase, oxidoreductase/transferase complex, lyase; HET:
ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1
c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C*
Length = 390
Score = 35.5 bits (83), Expect = 0.096
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 787 PVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLM 825
++ C SS+ A H A Q++ D + GV M
Sbjct: 86 AAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM 124
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen
condensation reaction, transfera; HET: CER; 1.70A
{Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A
3s20_A* 3fk5_A
Length = 345
Score = 34.5 bits (80), Expect = 0.20
Identities = 43/270 (15%), Positives = 74/270 (27%), Gaps = 81/270 (30%)
Query: 718 RQRHLLQE----SWL-------ALEDAGYGPNQIANQKIGMFVGVEEGSNYQDRLDQVNL 766
R L + S AL DA G +I G+ + N
Sbjct: 57 HARRLWDQDVQASDAATQAARKALIDANIGIEKI-----GLLI---------------NT 96
Query: 767 TSTHN-------AILSARLAYFMDLKGPVMA--INTACSSSLVATHIACQSLRQHECDTA 817
+ + + +I+S L + M + AC + + IA + L + E D A
Sbjct: 97 SVSRDYLEPSTASIVSGNL----GVSDHCMTFDVANACLAFINGMDIAARMLERGEIDYA 152
Query: 818 ISAGVNLMISPEAY---IAMTSAGMLSPDGKCYVFDERANGLVPSEAVVAVVLKRLSRAL 874
L++ E T M SPD F L A+V+ R
Sbjct: 153 ------LVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGAAAMVMAR----- 201
Query: 875 SDGDPIHAIIRGSGINYDGKTNGITAPNG--ISQ-------------TELIKSVYKKSNL 919
S+ P +G + N + N + + + +
Sbjct: 202 SELVPDAPRYKGGVTRSATEWNKLCRGNLDRMVTDTRLLLIEGIKLAQKTFVAAKQVLGW 261
Query: 920 NPEDINYIITH--------GTGTKLGDPVE 941
E+++ + H G
Sbjct: 262 AVEELDQFVIHQVSRPHTAAFVKSFGIDPA 291
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 33.7 bits (78), Expect = 0.22
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 240 LITGGTGRLG----MLFSD--YLINKYSTNLILSGRS--KLNSIIYKKLKKFNNKAIYIQ 291
LITG +G + F+ + L+LS R+ L I + + I
Sbjct: 6 LITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKIS-LECRAEGALTDTIT 64
Query: 292 VDVSDKLKMISEINSIINNIGPIDGVLHIAGI 323
D+SD + I+ G ID +++ AG+
Sbjct: 65 ADISDMADVRRLTTHIVERYGHIDCLVNNAGV 96
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 33.7 bits (78), Expect = 0.25
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 263 NLILSGRS--KLNSII--YKKLKKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVL 318
++L RS L + + K + I + +D++D K +EI I G +D ++
Sbjct: 33 RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVDILV 92
Query: 319 HIAGI 323
+ A +
Sbjct: 93 NAAAM 97
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 33.6 bits (78), Expect = 0.25
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 240 LITGGTGRLGMLFSDYLINKYSTNLILSGRS--KLNSIIYKKLKKFNNKAIYIQVDVSDK 297
L+TG LG +++ L +IL+ L + L + A + DV+D+
Sbjct: 13 LVTGSARGLGFAYAEGL-AAAGARVILNDIRATLLAESV-DTLTRKGYDAHGVAFDVTDE 70
Query: 298 LKMISEINSIINNIGPIDGVLHIAGI 323
L + + + + +D +++ AGI
Sbjct: 71 LAIEAAFSKLDAEGIHVDILINNAGI 96
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 33.7 bits (78), Expect = 0.27
Identities = 13/74 (17%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 263 NLILSGR--SKLNSIIYKKLKKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHI 320
+I +GR +L + + + Q+DV ++ + + S+ ID +++
Sbjct: 26 KVIATGRRQERLQELK----DELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVNN 81
Query: 321 AGISGLTSNILEAN 334
AG++ +A+
Sbjct: 82 AGLALGMEPAHKAS 95
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 33.7 bits (77), Expect = 0.30
Identities = 21/141 (14%), Positives = 43/141 (30%), Gaps = 15/141 (10%)
Query: 238 TYLITGGTGRLGMLFSDYLINKYSTNLILSG-RSKLNSIIYKKLKKFNNKAIYIQVDVSD 296
T L+TG +GR G + L + RS + +K +A D++D
Sbjct: 6 TVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSA------QGKEKIGGEADVFIGDITD 59
Query: 297 KLKMISEINSIINNIGPIDGVLHIAGISGLTSNILEANYKNFYSVLSSKISGTIALNY-A 355
+SI ID ++ + + + +++
Sbjct: 60 A-------DSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIG 112
Query: 356 LENTILKLQKNKLDFVCYFSS 376
+N I + + + S
Sbjct: 113 QKNQIDAAKVAGVKHIVVVGS 133
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 33.6 bits (78), Expect = 0.32
Identities = 20/91 (21%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 235 QGGTYLITGGTGRLGMLFSDYLINKYSTNLILSGRS--KLNSIIYKKLKKFNNKAIYIQV 292
+G L+TGG+ LG + L + +++++ R+ + + K +K+ + + +
Sbjct: 20 RGRVALVTGGSRGLGFGIAQGLA-EAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRC 78
Query: 293 DVSDKLKMISEINSIINNIGPIDGVLHIAGI 323
DVS+ ++ + ++ G +D V++ AGI
Sbjct: 79 DVSNYEEVKKLLEAVKEKFGKLDTVVNAAGI 109
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 33.8 bits (78), Expect = 0.34
Identities = 26/157 (16%), Positives = 47/157 (29%), Gaps = 35/157 (22%)
Query: 238 TYLITGGTGRLGMLFSDYLINKYSTNLI-----LSGRSKLNSIIYKKLKKFNNK----AI 288
T LITGG G +G + + + + + ++ L F N
Sbjct: 12 TILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGE 71
Query: 289 YIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISGLT-SNILEANYKNFYSVLSSKIS 347
I D+++ L + D + H A +S T N N
Sbjct: 72 VIAADINNPLDLRRLEK------LHFDYLFHQAAVSDTTMLNQELVMKTN--------YQ 117
Query: 348 GTIA-LNYALENTILKLQKNKLDFVCYFSSSSAILGD 383
+ L A + ++SS+ + G+
Sbjct: 118 AFLNLLEIARSKKA--------KVI--YASSAGVYGN 144
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 33.4 bits (77), Expect = 0.35
Identities = 14/91 (15%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 235 QGGTYLITGGTGRLGMLFSDYLINKYSTNLILSGRS--KLNSIIYKKLKKFNNKAIYIQV 292
+ ITGG +G ++ + ++ + +++ RS ++ + K + + + +
Sbjct: 26 RDKVAFITGGGSGIGFRIAEIFM-RHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSM 84
Query: 293 DVSDKLKMISEINSIINNIGPIDGVLHIAGI 323
DV +++ ++ + G ID +++ A
Sbjct: 85 DVRAPPAVMAAVDQALKEFGRIDILINCAAG 115
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 33.3 bits (77), Expect = 0.36
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 278 KKLKKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGIS 324
K K+F K Q DVS+ + I I ++GPI G++ AG+S
Sbjct: 57 KVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGPISGLIANAGVS 103
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 33.4 bits (77), Expect = 0.36
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 238 TYLITGGTGRLGMLFSDYLINKYSTNLILSGRS 270
++TG TG LG ++ I + + + R+
Sbjct: 2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRN 34
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 33.0 bits (76), Expect = 0.41
Identities = 14/74 (18%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 263 NLILSGR--SKLNSIIYKKLKKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHI 320
+L+L+GR +L ++ +L + + + +DV D+ M + ++++ + G+++
Sbjct: 47 SLVLTGRREERLQALA-GELSA-KTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGLINN 104
Query: 321 AGISGLTSNILEAN 334
AG++ T +
Sbjct: 105 AGLALGTDPAQSCD 118
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.43
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 771 NAI--LSARLAYFMDLKGPVMAIN 792
A+ L A L + D P +AI
Sbjct: 20 QALKKLQASLKLYADDSAPALAIK 43
Score = 31.1 bits (69), Expect = 1.1
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 18/48 (37%)
Query: 520 KKSEIYKNKNLADYGFDSISLAEFSRILSKFYSLDIMPSIFFSYSTLE 567
+K + K L + SL K Y+ D P++ +T+E
Sbjct: 18 EKQAL---KKL-----QA-SL--------KLYADDSAPALAIK-ATME 47
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 33.3 bits (77), Expect = 0.45
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 238 TYLITGGTGRLGMLFSDYLINKYS--TNL-ILSGRSKLNSIIYKKLKKFNNKAIYIQVDV 294
LITGG G LG + + +++ LS + +++ L ++ D+
Sbjct: 3 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNL--HWLSS-LGNFEFVHGDI 59
Query: 295 SDKLKMISEINSIINNIGPIDGVLHIAG 322
+K +++ +I P D H+AG
Sbjct: 60 RNK----NDVTRLITKYMP-DSCFHLAG 82
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 32.5 bits (75), Expect = 0.51
Identities = 12/74 (16%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 263 NLILSGRS--KLNSIIYKKLKKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHI 320
+ L R +L + L A+ + DV ++ + ++ G + +++
Sbjct: 31 RVGLMARDEKRL-----QALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELSALVNN 85
Query: 321 AGISGLTSNILEAN 334
AG+ G+ + E
Sbjct: 86 AGV-GVMKPVHELT 98
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 3.00A
{Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Length = 401
Score = 33.2 bits (77), Expect = 0.53
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 787 PVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLM 825
+N C S L A A +++ E I +GV M
Sbjct: 81 AGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESM 119
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center
for structural genomics O infectious diseases, alpha
beta; HET: CSO; 1.70A {Bacillus anthracis}
Length = 394
Score = 32.8 bits (76), Expect = 0.59
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 787 PVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLM 825
I CSS + A A ++ + ++ GV M
Sbjct: 83 TGYTIQRQCSSGMQAIMSAAMQIQLGVSEVVVAGGVEAM 121
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 32.5 bits (75), Expect = 0.66
Identities = 9/55 (16%), Positives = 22/55 (40%)
Query: 278 KKLKKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISGLTSNILE 332
K + + + ++SD + I+ + G ID + AG++ ++
Sbjct: 76 HLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEID 130
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 32.5 bits (75), Expect = 0.70
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 7/91 (7%)
Query: 235 QGGTYLITGGTGRLGMLFSDYLINKYSTNLILSGRS--KLNSIIYKKLKKFNNKAIYIQV 292
G L+TG TG +G + + + L G KL I
Sbjct: 26 TGRKALVTGATGGIGEAIARCF-HAQGAIVGLHGTREDKLKEIA----ADLGKDVFVFSA 80
Query: 293 DVSDKLKMISEINSIINNIGPIDGVLHIAGI 323
++SD+ + + ID +++ AGI
Sbjct: 81 NLSDRKSIKQLAEVAEREMEGIDILVNNAGI 111
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 32.4 bits (74), Expect = 0.72
Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 286 KAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISGLTSNILEANYK--------N 337
+ + +Q+DV+ + + + GP+ + + AG+ L I E++Y N
Sbjct: 60 EVMGVQLDVASREGFKMAADEVEARFGPVSILCNNAGV-NLFQPIEESSYDDWDWLLGVN 118
Query: 338 FYSVL 342
+ V+
Sbjct: 119 LHGVV 123
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 32.2 bits (74), Expect = 0.88
Identities = 29/164 (17%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 226 KDFKNSYIKQGGTYLITGGTGRLGMLFSDYLINKYST-----NLILSGRSKLNSIIYKKL 280
++ + Q +LITG G +G + L+ N + L+ +
Sbjct: 17 EELRKELPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVS 76
Query: 281 KKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISGLTSNILEANYKNFYS 340
+K + +IQ D+ + + +D VLH A + + +I + +
Sbjct: 77 EKQWSNFKFIQGDIRNLDDCNNACAG-------VDYVLHQAALGSVPRSI-----NDPIT 124
Query: 341 VLSSKISGTIA-LNYALENTILKLQKNKLDFVCYFSSSSAILGD 383
++ I G + L A + + F +++SS+ GD
Sbjct: 125 SNATNIDGFLNMLIAARDAKVQS-------FT--YAASSSTYGD 159
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 32.1 bits (74), Expect = 0.88
Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 26/102 (25%)
Query: 235 QGGTYLITGGT-----------GRLGMLFSDYLINKYSTNLILSGRS--KLNSIIYKKLK 281
+ +ITGG+ + G ++++GR+ KL +++
Sbjct: 5 KEKVVIITGGSSGMGKGMATRFAKEGA------------RVVITGRTKEKLEEAK-LEIE 51
Query: 282 KFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGI 323
+F + + +Q+DV + + I I G ID +++ A
Sbjct: 52 QFPGQILTVQMDVRNTDDIQKMIEQIDEKFGRIDILINNAAG 93
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 31.7 bits (73), Expect = 1.1
Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
Query: 235 QGGTYLITGGTGRLGMLFSDYLINKYSTNLILSGRS--KLNSIIYKKLKKFNNKAIYIQV 292
L+TG + +G + L ++ + S +K+ KA + +
Sbjct: 4 NEKVALVTGASRGIGFEVAHAL-ASKGATVVGTATSQASAEKFE-NSMKEKGFKARGLVL 61
Query: 293 DVSDKLKMISEINSIINNIGPIDGVLHIAGI 323
++SD + + I ID +++ AGI
Sbjct: 62 NISDIESIQNFFAEIKAENLAIDILVNNAGI 92
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 31.8 bits (73), Expect = 1.1
Identities = 14/89 (15%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 235 QGGTYLITGGTGRLGMLFSDYLINKYSTNLILSGRSKLNSIIYKKLKKFNNKAIYIQVDV 294
G T ++TG +G + + +++ GR+ + ++ A + D+
Sbjct: 30 AGRTAVVTGAGSGIGRAIAHGYA-RAGAHVLAWGRTDGVKEVADEIADGGGSAEAVVADL 88
Query: 295 SDKLKMISEINSIINNIGPIDGVLHIAGI 323
+D + + + + +D +++ AGI
Sbjct: 89 ADL-EGAANVAEELAATRRVDVLVNNAGI 116
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 32.0 bits (73), Expect = 1.2
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 238 TYLITGGTGRLGMLFSDYLINK----YST--NLILSGRSKLNSIIYKKLKKFNNKAIYIQ 291
LITG + G L ++ L Y++ +++ S + +I + + ++
Sbjct: 7 IILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIA-GFARDNDVDLRTLE 65
Query: 292 VDVSDKLKMISEINSIINNIGPIDGVLHIAGI 323
+DV ++ + I+ II G ID ++H AG
Sbjct: 66 LDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGH 97
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 31.8 bits (73), Expect = 1.2
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 286 KAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISGLTSNILEANYKNFYSVLSSK 345
+A+ I DV + + + +++ G +DG+++ AGI + E + + +L
Sbjct: 77 EAVAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVN 136
Query: 346 ISGTIALNYALENTILKLQKNKLDFVCYFSSSSAILGDFGSC-DYA 390
++G+I + +L + + SS +AILG DYA
Sbjct: 137 VTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQYVDYA 182
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 31.8 bits (73), Expect = 1.3
Identities = 18/91 (19%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 235 QGGTYLITGGTGRLGMLFSDYLINKYSTNLILSGRS--KLNSIIYKKLKKFNNKAIYIQV 292
+G L+TG + +G + K ++ + + ++ + K A
Sbjct: 33 KGKIALVTGASYGIGFAIASAYA-KAGATIVFNDINQELVDRGM-AAYKAAGINAHGYVC 90
Query: 293 DVSDKLKMISEINSIINNIGPIDGVLHIAGI 323
DV+D+ + + + I + +G ID +++ AGI
Sbjct: 91 DVTDEDGIQAMVAQIESEVGIIDILVNNAGI 121
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, thiolase;
1.25A {Clostridium difficile}
Length = 396
Score = 31.7 bits (73), Expect = 1.4
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 787 PVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLM 825
P M IN C S L + +A Q + + D + G M
Sbjct: 85 PAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENM 123
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 31.3 bits (72), Expect = 1.4
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 278 KKLKKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGIS 324
K Y DV+D L + + + + ID +++ A
Sbjct: 40 ADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVNNACRG 86
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 31.4 bits (72), Expect = 1.6
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 235 QGGTYLITGGTGRLGMLFSDYLINKYSTNLILSGRS--KLNSIIYKKLKKFNNKAIYIQV 292
+ L+TG +G + L K +++I R+ +S++ ++K F ++
Sbjct: 43 ENKVALVTGAGRGIGREIAKMLA-KSVSHVICISRTQKSCDSVV-DEIKSFGYESSGYAG 100
Query: 293 DVSDKLKMISEINSIINNIGPIDGVLHIAGI 323
DVS K ++ IN I+ +D +++ AGI
Sbjct: 101 DVSKKEEISEVINKILTEHKNVDILVNNAGI 131
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 31.1 bits (71), Expect = 1.9
Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 9/102 (8%)
Query: 240 LITGGTGRLG----MLFSDYLINKYSTNLILSGR--SKLNSIIYKKLKKFNN-KAIYIQV 292
LITG + +G + + + LIL+ R KL + ++F N K Q+
Sbjct: 37 LITGASAGIGKATALEYLEASNGDM--KLILAARRLEKLEELKKTIDQEFPNAKVHVAQL 94
Query: 293 DVSDKLKMISEINSIINNIGPIDGVLHIAGISGLTSNILEAN 334
D++ K+ I ++ ID +++ AG + + + +
Sbjct: 95 DITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIA 136
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase;
2.00A {Clostridium difficile}
Length = 395
Score = 31.3 bits (72), Expect = 1.9
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 787 PVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLM 825
P +N C S L + +A QS+ E D I+ G M
Sbjct: 83 PSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENM 121
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad,
SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A
{Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A*
2gna_A*
Length = 344
Score = 31.1 bits (71), Expect = 2.2
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 25/93 (26%)
Query: 238 TYLITGGTGRLGMLFSDYLINKYSTNLILSGRSKLNSIIY----KKL----KKFNNKAI- 288
T LITGGTG G F +++ + I I+Y K +FN+ +
Sbjct: 23 TILITGGTGSFGKCFVRKVLDTTNAKKI---------IVYSRDELKQSEMAMEFNDPRMR 73
Query: 289 YIQVDVSDKLKMISEINSIINNIGPIDGVLHIA 321
+ DV D + + +D +H A
Sbjct: 74 FFIGDVRDL-------ERLNYALEGVDICIHAA 99
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 31.0 bits (71), Expect = 2.2
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 263 NLILSGRSKLNSIIYKKLKKFNN-KAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIA 321
L+L R ++LK N + QVDV+DK + I GP D +++ A
Sbjct: 42 PLLLLARRV------ERLKALNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNA 95
Query: 322 GISGLTSNILEAN 334
G+ L I
Sbjct: 96 GMM-LLGQIDTQE 107
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 31.0 bits (71), Expect = 2.2
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 278 KKLKKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGI 323
++ KA+ I+ DV+ ++ ++ + +G ID + AGI
Sbjct: 74 DEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCNAGI 119
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase,
hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP:
b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19
d.315.1.1
Length = 1151
Score = 31.5 bits (72), Expect = 2.3
Identities = 25/193 (12%), Positives = 55/193 (28%), Gaps = 35/193 (18%)
Query: 695 PGIDEFDPLFFEISP-------------LEAERMDPRQRHLLQESWLALEDAGYGPNQIA 741
GI+ + PLFF + ++ ++ E+ G P +
Sbjct: 258 AGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPL 317
Query: 742 NQKIGMFVGVEEGSNYQDRLDQVNLTSTHNAILSAR----------LAYFMDLKGPVMAI 791
+++ V+E + +V L + H +A LA K P+ A+
Sbjct: 318 LPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDAL 377
Query: 792 NTACSSSLVATHIACQS----------LRQHECDTAISAGVNLMISPEAYIAMT--SAGM 839
+ + +S L + + ++ Y+ + G
Sbjct: 378 RKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGF 437
Query: 840 LSPDGKCYVFDER 852
+ + E
Sbjct: 438 VDTVRNLALICES 450
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 30.7 bits (69), Expect = 2.5
Identities = 14/54 (25%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 278 KKLKK-FNNKAIYIQVDVSDKLKMISEI-NSIINNIGPIDGVLHIAGISGLTSN 329
+KLK + ++ Q+DV+D + +S + + I + G +D +++ AG++G + +
Sbjct: 54 EKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVD 107
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 30.6 bits (70), Expect = 2.5
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 235 QGGTYLITGGTGRLGMLFSDYLINKYSTNLILSGRS--KLNSIIYKKLKKFNNKAIYIQV 292
QG ITGG LG + L +++ R L + + + NK IQ
Sbjct: 25 QGKVAFITGGGTGLGKGMTTLLS-SLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQC 83
Query: 293 DVSDKLKMISEINSIINNIGPIDGVLHIAGI 323
DV D + + ++ +I G + V++ A
Sbjct: 84 DVRDPDMVQNTVSELIKVAGHPNIVINNAAG 114
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 30.6 bits (70), Expect = 2.7
Identities = 9/46 (19%), Positives = 23/46 (50%)
Query: 278 KKLKKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGI 323
+ L+ + + +DV++ + + + S+ G +D ++ AGI
Sbjct: 55 EDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGRVDILVACAGI 100
>2wj8_A Nucleoprotein; RNA binding protein RNA complex, nucleocapsid (N),
ribonucleoprotein, respiratory syncytial virus (RSV);
3.29A {Human respiratory syncytial virus astrain long}
PDB: 2yhm_A 2yhp_A 2yhq_A
Length = 391
Score = 30.9 bits (69), Expect = 2.7
Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 19/126 (15%)
Query: 228 FKNSYIKQGGTYLITGGTGRLGMLFSDYLINKYSTNLILSGRSKLNSIIYKKLKKFNNKA 287
F + ++ G T G R+ +F+ +N Y +G+ L + L K
Sbjct: 219 FIDVFVHFGIAQSSTRGGSRVEGIFAGLFMNAYG-----AGQVMLR---WGVLAKSVKNI 270
Query: 288 IYIQVDVSDKLKMISEINSIINNIGPIDGVLHI-----AGISGLTSNILEANYKNFYSVL 342
+ V +++ + E+ +G G HI A + LT + +F SV+
Sbjct: 271 MLGHASVQAEMEQVVEVYEYAQKLGGEAGFYHILNNPKASLLSLT------QFPHFSSVV 324
Query: 343 SSKISG 348
+G
Sbjct: 325 LGNAAG 330
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 30.6 bits (70), Expect = 2.7
Identities = 14/66 (21%), Positives = 33/66 (50%)
Query: 278 KKLKKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISGLTSNILEANYKN 337
+++ +A DV+ + +I ++S++ + G ID + + AG G + + + +
Sbjct: 49 ASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDD 108
Query: 338 FYSVLS 343
F VL+
Sbjct: 109 FARVLT 114
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 30.6 bits (70), Expect = 2.8
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 278 KKLKKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISGLT 327
K++ AI + VDVSD + + + G ID +++ A I G
Sbjct: 51 KQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGGIDYLVNNAAIFGGM 100
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoi oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 30.8 bits (69), Expect = 2.9
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 240 LITGGTGRLGMLFSDYLINKYSTNLILSGRSKLNSIIYKKLKKFNNK-AIYIQVDVSDK 297
LI G TG +G + ++ + IL+ + K K +K AI + ++++
Sbjct: 14 LIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQ 72
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 30.3 bits (69), Expect = 3.0
Identities = 11/76 (14%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 263 NLILSGR--SKLNSIIYKKLKK--FNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVL 318
++ R + + + K + I + D+S++ ++S ++I + +D +
Sbjct: 58 KVVGCARTVGNIEELA-AECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICI 116
Query: 319 HIAGISGLTSNILEAN 334
+ AG++ +L +
Sbjct: 117 NNAGLA-RPDTLLSGS 131
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 30.2 bits (69), Expect = 3.0
Identities = 10/58 (17%), Positives = 27/58 (46%)
Query: 286 KAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISGLTSNILEANYKNFYSVLS 343
A+ + D+S + + + + + ++ G +D +++ AGI N + F ++
Sbjct: 56 AALAVAADISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVG 113
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 30.3 bits (69), Expect = 3.1
Identities = 6/45 (13%), Positives = 18/45 (40%)
Query: 281 KKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISG 325
+ N+A ++ +V+ + +++ I + V+ G
Sbjct: 72 DELGNRAEFVSTNVTSEDSVLAAIEAANQLGRLRYAVVAHGGFGV 116
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 30.3 bits (69), Expect = 3.1
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 280 LKKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISG 325
L++ IY++ DV+ + + + P+ V+ AG+
Sbjct: 34 LRREGEDLIYVEGDVTREEDVRRAVARAQEE-APLFAVVSAAGVGL 78
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A
{Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Length = 397
Score = 30.7 bits (70), Expect = 3.2
Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 22/105 (20%)
Query: 238 TYLITGGTGRLG------MLFS--------DYLIN----KYSTNLILSGRSKLNSIIYKK 279
L+ GG G +G +L D L+ + KL K
Sbjct: 4 RVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPK 63
Query: 280 LKKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGIS 324
+ A DV ++ + N + GPID V+H+
Sbjct: 64 PPWADRYAALEVGDVRNEDFL----NGVFTRHGPIDAVVHMCAFL 104
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 30.2 bits (69), Expect = 3.2
Identities = 16/91 (17%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 235 QGGTYLITGGTGRLGMLFSDYLINKYSTNLILSGRS--KLNSIIYKKLKKFNNKAIYIQV 292
+G L+TG + +G ++ L + +I + S +I + + +
Sbjct: 8 EGKVALVTGASRGIGKAIAELLA-ERGAKVIGTATSESGAQAIS----DYLGDNGKGMAL 62
Query: 293 DVSDKLKMISEINSIINNIGPIDGVLHIAGI 323
+V++ + + + +I + G +D +++ AGI
Sbjct: 63 NVTNPESIEAVLKAITDEFGGVDILVNNAGI 93
>2ifa_A Hypothetical protein SMU.260; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: FMN;
2.30A {Streptococcus mutans} SCOP: d.90.1.1
Length = 208
Score = 29.9 bits (67), Expect = 3.4
Identities = 36/155 (23%), Positives = 59/155 (38%), Gaps = 31/155 (20%)
Query: 617 SNFILNKNTDINSEELIAIIGMSGRF-PAARNINEFWKILI----NNKDVISEIPEKIFD 671
S + L K D++ EL+A+I + + P+A N + L+ +++D ++I +
Sbjct: 13 SIYALGKTVDLSKAELVALIQNAIKQAPSAFNSQT-SRALVLFGQDSQDFWNKIAYSELE 71
Query: 672 WKLYYENPIKSSNKINS--KWYGSIPGIDEFDPLFFE----ISPLE------AERMDPRQ 719
E + K+ S G+I L FE + LE AE P
Sbjct: 72 KVTPAEAFAGTKAKLESFAAGVGTI--------LLFEDQAVVRNLEENFPLYAENFQPWS 123
Query: 720 RH----LLQESWLALEDAGYGPN-QIANQKIGMFV 749
L WLAL + G + Q N + V
Sbjct: 124 EQAHGIALYAIWLALAEQNIGMSVQHYNPLVDAQV 158
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 30.1 bits (69), Expect = 3.5
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 235 QGGTYLITGGTGRLGMLFSDYLINKYSTNLILSGRS--KLNSIIYKKLKKFNNKAIYIQV 292
QG L+TG T +G ++ L + +I++G S + ++ + K+ KA +++
Sbjct: 6 QGKVSLVTGSTRGIGRAIAEKLA-SAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEM 64
Query: 293 DVSDKLKMISEINSIINNIGPIDGVLHIAGI 323
++ + + I N + ID +++ AGI
Sbjct: 65 NLLSEESINKAFEEIYNLVDGIDILVNNAGI 95
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 30.3 bits (69), Expect = 3.5
Identities = 9/45 (20%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 281 KKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISG 325
++A + DV+D+ + S ++ + +G + V++ AG
Sbjct: 48 ADLGDRARFAAADVTDEAAVASALD-LAETMGTLRIVVNCAGTGN 91
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 30.2 bits (69), Expect = 3.7
Identities = 14/91 (15%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 235 QGGTYLITGGTGRLGMLFSDYLINKYSTNLILSGRS--KLNSIIYKKLKKFNNKAIYIQV 292
++TG + +G + L + +I + + I K+ + +
Sbjct: 27 DKQVAIVTGASRGIGRAIALELA-RRGAMVIGTATTEAGAEGIG-AAFKQAGLEGRGAVL 84
Query: 293 DVSDKLKMISEINSIINNIGPIDGVLHIAGI 323
+V+D + + + S + G ++ +++ AGI
Sbjct: 85 NVNDATAVDALVESTLKEFGALNVLVNNAGI 115
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 30.2 bits (69), Expect = 3.7
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 263 NLILSGRS--KLNSIIYKKLKKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHI 320
N+ ++GRS +++ + + + K I +Q DVSD+ + + + G ID V
Sbjct: 36 NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFGGIDVVCAN 95
Query: 321 AGI 323
AG+
Sbjct: 96 AGV 98
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.35A {Burkholderia xenovorans}
Length = 354
Score = 30.2 bits (69), Expect = 4.6
Identities = 6/43 (13%), Positives = 13/43 (30%), Gaps = 8/43 (18%)
Query: 907 TELIKSVYKKSNLNPEDINYIITH--------GTGTKLGDPVE 941
+L+ + + + + + H K G P E
Sbjct: 247 PKLVSRTLDIAGRDKDSYDAFLFHQANLFMLKHLAKKAGLPAE 289
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown
function, ATC, S genomics, PSI-2, protein structure
initiative; NMR {Agrobacterium tumefaciens} SCOP:
a.28.1.1
Length = 105
Score = 28.4 bits (63), Expect = 4.9
Identities = 11/85 (12%), Positives = 25/85 (29%), Gaps = 11/85 (12%)
Query: 502 EKFIENDIKNHICNIL------NTKKSEIYKNKNLADYGFDSISLAEFSRILSKFYSL-- 553
+ + + I IL T I +L G S + + + + + +
Sbjct: 16 NLYFQGHMNATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEF 75
Query: 554 ---DIMPSIFFSYSTLERLITYFIK 575
+ F S +E + +
Sbjct: 76 PDNLLNRKSFASIKAIEDTVKLILD 100
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 29.8 bits (68), Expect = 4.9
Identities = 13/66 (19%), Positives = 30/66 (45%)
Query: 278 KKLKKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISGLTSNILEANYKN 337
++L+ + + ++ DVS K + + ID + + AGI + + E + +
Sbjct: 49 QELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDEL 108
Query: 338 FYSVLS 343
+ VL+
Sbjct: 109 WERVLA 114
>2igs_A Hypothetical protein; helix-bundles, alpha-beta, structural
genomics, PSI-2, prote structure initiative; 2.17A
{Pseudomonas aeruginosa} SCOP: d.2.1.11
Length = 219
Score = 29.4 bits (65), Expect = 5.2
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 882 AIIRGSGINYDGKTNGITAPNGISQTELIKSVYKKSNLNPEDINYIITHGTGTKLGDP 939
+ GI+ + +G+ G++ L ++ L PEDI ++ G G +L P
Sbjct: 135 STDASGGISQE---SGLLVSYGVNLRTLTPGTWQAMTL-PEDIKALVGPGVGLRLDAP 188
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 29.8 bits (68), Expect = 5.2
Identities = 33/148 (22%), Positives = 51/148 (34%), Gaps = 40/148 (27%)
Query: 239 YLITGGTGRLGMLFSDYLINKYSTNLILSGRSKLNSIIYKKLKKFNNKAIYIQVDVSDKL 298
+TGGTG LG + + N +T +IL+ SI K N Y D + +
Sbjct: 5 IAVTGGTGFLGQYVVESIKNDGNTPIILT-----RSIGNKA----INDYEYRVSDYTLE- 54
Query: 299 KMISEINSIINNIGPIDGVLHIAGISGLTSNIL--EANYKNFYSVLSSKISGTIA-LNYA 355
+IN + +D V+H+A G I N T +
Sbjct: 55 -------DLINQLNDVDAVVHLAATRGSQGKISEFHDN-----------EILTQNLYDAC 96
Query: 356 LENTILKLQKNKLDFVCYFSSSSAILGD 383
EN I V ++S+ + D
Sbjct: 97 YENNISN-------IV--YASTISAYSD 115
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 29.4 bits (67), Expect = 5.5
Identities = 10/58 (17%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 286 KAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISGLTSNILEANYKNFYSVLS 343
A Y+ +DV+ + + +++ + G + +++ AGI + + I + + +L
Sbjct: 54 AARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGT-IEDYALTEWQRILD 110
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 29.4 bits (67), Expect = 5.6
Identities = 13/58 (22%), Positives = 27/58 (46%)
Query: 286 KAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISGLTSNILEANYKNFYSVLS 343
A++I DV+ + + + ++ I G +D V++ AG E + + F +L
Sbjct: 55 GAVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLE 112
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 29.8 bits (67), Expect = 5.7
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 286 KAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISGLTSNILEANYKNFYSVLSSK 345
KA+ VDV D+ ++ + + I G ID +++ A LT+ L+ K +++
Sbjct: 102 KALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTN-TLDTPTKRLDLMMNVN 160
Query: 346 ISGTIAL 352
GT
Sbjct: 161 TRGTYLA 167
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 29.4 bits (67), Expect = 5.9
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 286 KAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISGLTSNILE 332
+ + DVSD+ ++ + + + G IDG + AGI G +
Sbjct: 65 EVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTES 111
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase,
acyltransferase, lipid synthesis, multifun enzyme; 1.81A
{Pseudomonas aeruginosa}
Length = 331
Score = 29.8 bits (68), Expect = 6.0
Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 907 TELIKSVYKKSNLNPEDINYIITH--------GTGTKLGDPVE 941
++ ++ V + D+++++ H +L PVE
Sbjct: 227 SDSVRRVLDRVGWQASDLHHLVPHQANTRILAAVADQLDLPVE 269
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis,
thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera}
PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A*
2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A*
2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A*
...
Length = 392
Score = 29.7 bits (68), Expect = 6.0
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 787 PVMAINTACSSSLVATHIACQSLRQHECDTAISAGVNLM 825
+N C S L A + Q + + ++ G+ M
Sbjct: 81 TAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESM 119
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 29.4 bits (67), Expect = 6.1
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 281 KKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGI 323
K + KA + V + ++ + G ID + AG
Sbjct: 69 KTYGIKAKAYKCQVDSYESCEKLVKDVVADFGQIDAFIANAGA 111
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 29.5 bits (67), Expect = 6.4
Identities = 30/174 (17%), Positives = 67/174 (38%), Gaps = 27/174 (15%)
Query: 216 YQLNIKSIILKDFKNSYIKQGGTYLITGGTGRLGMLFSDYLINKYST-----NLILSGRS 270
+ ++I ++ I T+LITG G +G + L+ N +
Sbjct: 5 HHMDIYMSRYEEITQQLIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQY 64
Query: 271 KLNSIIYKKLKKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISGLTSNI 330
L+ + + ++ +I+ D+ D + ++ +D VLH A + + +I
Sbjct: 65 NLDEVKTLVSTEQWSRFCFIEGDIRDL----TTCEQVMKG---VDHVLHQAALGSVPRSI 117
Query: 331 LEANYKNFYSVLSSKISGTIA-LNYALENTILKLQKNKLDFVCYFSSSSAILGD 383
+ + ++ I+G + L+ A + F +++SS+ GD
Sbjct: 118 -----VDPITTNATNITGFLNILHAAKNAQVQS-------FT--YAASSSTYGD 157
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 29.4 bits (67), Expect = 6.6
Identities = 30/157 (19%), Positives = 50/157 (31%), Gaps = 50/157 (31%)
Query: 238 TYLITGGTGRLGMLFS---DYLINKYST----NLILSGRSKLNSIIYKKLKKFNNKAIYI 290
++TGG G +G S D L NL SG + N A +
Sbjct: 3 LIVVTGGAGFIG---SHVVDKLSESNEIVVIDNLS-SGN----------EEFVNEAARLV 48
Query: 291 QVDVSDKLKMISEINSIINNIGPIDGVLHIAGISGL---TSNILEANYKNFYSVLSSKIS 347
+ D++ I + + + V HIA + N E N +
Sbjct: 49 KADLAAD--------DIKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNN--------VL 92
Query: 348 GTIA-LNYALENTILKLQKNKLDFVCYFSSSSAILGD 383
T L + + + V F+S+S + G+
Sbjct: 93 ATYRLLEAMRKAGVSR-------IV--FTSTSTVYGE 120
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics,
synthetase; 1.60A {Burkholderia pseudomallei} PDB:
3gwe_A
Length = 365
Score = 29.5 bits (67), Expect = 6.6
Identities = 5/43 (11%), Positives = 11/43 (25%), Gaps = 8/43 (18%)
Query: 907 TELIKSVYKKSNLNPEDINYIITH--------GTGTKLGDPVE 941
+ + E+I+ + H K+ P
Sbjct: 269 PRAADRLLALAGEPRENIDCFVLHQANRFMLDALRKKMKIPEH 311
>2a1i_A DNA excision repair protein ERCC-1; XPF, central domain, DNA
repair, endonuclease, DNA binding protein; HET: DNA;
1.90A {Homo sapiens} SCOP: c.52.1.20 PDB: 2jnw_A*
2jpd_A*
Length = 146
Score = 28.7 bits (64), Expect = 6.6
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 253 SDYLINKYSTNLILSGRS-KLN-SIIYKKLKK----FNNKAIYIQVDVSDKLKMISEIN- 305
DY++ + + L LS R L+ I+ +L+ F + + +QVDV D + + E+
Sbjct: 47 PDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQALKELAK 106
Query: 306 -SIINNI 311
I+ +
Sbjct: 107 MCILADC 113
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 29.0 bits (66), Expect = 7.2
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 286 KAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISGLTS 328
A Y +DV+ + + G +DG+++ AGIS
Sbjct: 52 AARYQHLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMF 94
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 29.0 bits (66), Expect = 7.5
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 276 IYKKLKKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGI 323
+ K+++ + +AI DVS + + + + + I+ G ID V++ AGI
Sbjct: 42 VSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTIDVVVNNAGI 89
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.9 bits (64), Expect = 8.0
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 24/94 (25%)
Query: 436 QTDFYFKSSKQKVLHENDGLKL---------FEQLLIQDK-IQYLVLSGE-LEKLNQIIN 484
Q + Y K+ + +D K+ E + K ++LV++ E E
Sbjct: 121 QVN-YSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVIAYEPFE------- 172
Query: 485 NIAPKVSENKKI----NNFNIEKFIENDIKNHIC 514
NIA ++ +I NN D N C
Sbjct: 173 NIAIEL-PPNEILFSENNDMDNNNDGVDELNKKC 205
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle
structural genomics center for infectious DI
transferase; 2.35A {Burkholderia xenovorans}
Length = 333
Score = 29.4 bits (67), Expect = 8.0
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 907 TELIKSVYKKSNLNPEDINYIITH--------GTGTKLGDPVE 941
++ +K+NL+ E I+++I H T KLG P E
Sbjct: 237 EKVAVEALEKANLSAEQIDWLIPHQANIRIMQSTCRKLGLPQE 279
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase;
HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2
c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A*
2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Length = 317
Score = 29.4 bits (67), Expect = 8.0
Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 907 TELIKSVYKKSNLNPEDINYIITH--------GTGTKLGDPVE 941
++ +NL+ +++++ H T KLG ++
Sbjct: 221 AHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMSMD 263
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia,
isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP:
c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A*
1i3n_A*
Length = 348
Score = 29.4 bits (67), Expect = 8.1
Identities = 19/97 (19%), Positives = 43/97 (44%), Gaps = 18/97 (18%)
Query: 236 GGTYLITGGTGRLG------MLFSDY---LINKYSTNLILSGRSKLNSIIYKKLKKFNNK 286
L+TGG G +G +L + Y +I+ + N G S S+ +++++ +
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFH-NAFRGGGSLPESL--RRVQELTGR 58
Query: 287 AI-YIQVDVSDKLKMISEINSIINNIGPIDGVLHIAG 322
++ + ++D+ D+ + + V+H AG
Sbjct: 59 SVEFEEMDILDQ----GALQRLFKK-YSFMAVIHFAG 90
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 29.0 bits (66), Expect = 8.4
Identities = 9/48 (18%), Positives = 23/48 (47%)
Query: 276 IYKKLKKFNNKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGI 323
++ K + + DV + + + + + ++ G ID +++ AGI
Sbjct: 46 TAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFGRIDILVNNAGI 93
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 29.2 bits (66), Expect = 8.6
Identities = 30/163 (18%), Positives = 56/163 (34%), Gaps = 52/163 (31%)
Query: 235 QGGTYLITGGTGRLGMLF-----SDYLINKYSTNLIL-----SGRSKLNSIIYKKLKKFN 284
+G ++TGG G F L +K T++++ G +N L N
Sbjct: 45 EGRMIIVTGGAG-----FIGSNIVKALNDKGITDILVVDNLKDGTKFVN------LVDLN 93
Query: 285 NKAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISGLT-SN---ILEANYKNFYS 340
+ D ++ G ++ + H S T + +++ NY+
Sbjct: 94 IADYMDKEDFLIQIMA-------GEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKE 146
Query: 341 VLSSKISGTIALNYALENTILKLQKNKLDFVCYFSSSSAILGD 383
+ L+Y LE I F+ ++SS+A G
Sbjct: 147 L----------LHYCLEREI--------PFL--YASSAATYGG 169
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif,
gamma-N6M-adenosine methyltrans S-adenosyl-methionine
binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Length = 878
Score = 29.5 bits (65), Expect = 8.7
Identities = 11/111 (9%), Positives = 30/111 (27%), Gaps = 2/111 (1%)
Query: 557 PSIFFSYSTLERLITYFIKNHNNTMIKFYRNKYPLKTESKN--ISILYDNKINENYENVS 614
F + ++ K + I+ + PL+ + L ++ + + +
Sbjct: 498 REGLFEEVIKDTVVFVGRKGSSVEEIEVLDSFTPLEQVDLHNLKRALSNSSNEQIIQPMG 557
Query: 615 KKSNFILNKNTDINSEELIAIIGMSGRFPAARNINEFWKILINNKDVISEI 665
+ + + I +GR N I ++
Sbjct: 558 MELRKEKREELENRVTVGWRHITSNGRVAEEWITNNLESHCIRLVASDYDL 608
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 29.1 bits (66), Expect = 9.1
Identities = 16/47 (34%), Positives = 31/47 (65%)
Query: 286 KAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISGLTSNILE 332
+AI ++ DVSD+L+M + + ++ G +D V+ AGI+G+ + I +
Sbjct: 78 QAIALEADVSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDD 124
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; 2.70A {Haemophilus influenzae}
Length = 323
Score = 29.0 bits (66), Expect = 9.2
Identities = 7/43 (16%), Positives = 20/43 (46%), Gaps = 8/43 (18%)
Query: 907 TELIKSVYKKSNLNPEDINYIITH--------GTGTKLGDPVE 941
+ +++ +NL+ +D+++++ H T KL +
Sbjct: 227 SNVVEETLLANNLDKKDLDWLVPHQANLRIITATAKKLEMDMS 269
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 28.7 bits (65), Expect = 9.3
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 286 KAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISGLTSNILEANYKNFYSVLS 343
K +I+ DV++ ++ + I+ I G I +++ AGI I + + ++
Sbjct: 47 KYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGK-IESMSMGEWRRIID 103
>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural
genomics, enterococcus faecalis V583, PSI, protein
structure initiative; HET: MSE; 2.26A {Enterococcus
faecalis} SCOP: c.77.1.4
Length = 336
Score = 29.0 bits (66), Expect = 9.3
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 782 MDLKGPVMAINTACSSSLVATHIACQSLRQHECDTAISAG 821
D + PV AI ++S+V +A Q+++ E D SAG
Sbjct: 66 SDDE-PVKAIRRKKTASMV---LAAQAVKNGEADAIFSAG 101
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5,
lipid metabolism, structural genomics; 2.10A {Aquifex
aeolicus}
Length = 309
Score = 29.0 bits (66), Expect = 9.3
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 8/43 (18%)
Query: 907 TELIKSVYKKSNLNPEDINYIITH--------GTGTKLGDPVE 941
E+ + V +K+ + PE+++ +I H KL P E
Sbjct: 213 EEVCREVLEKAGVKPEEVSLVIPHQANVRIINALAEKLNIPKE 255
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 28.6 bits (65), Expect = 9.6
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 286 KAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGIS 324
+DV+ K +I+ N + +D + ++AG
Sbjct: 51 GIQTRVLDVTKK----KQIDQFANEVERLDVLFNVAGFV 85
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid
biosynthesis, transferase; 2.00A {Staphylococcus aureus
subsp} PDB: 3il7_A
Length = 313
Score = 29.0 bits (66), Expect = 9.7
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 907 TELIKSVYKKSNLNPEDINYIITH--------GTGTKLGDPVE 941
+ V +K+NL +DI+ I H +LG +
Sbjct: 215 GDASTRVVEKANLTSDDIDLFIPHQANIRIMESARERLGISKD 257
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 28.7 bits (65), Expect = 9.8
Identities = 10/40 (25%), Positives = 26/40 (65%)
Query: 286 KAIYIQVDVSDKLKMISEINSIINNIGPIDGVLHIAGISG 325
K ++IQ DV+D+ ++ ++++ G +D +++ AG++
Sbjct: 59 KTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNN 98
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA,
transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa
PAO1} PDB: 3h76_A 3h77_A*
Length = 359
Score = 29.1 bits (66), Expect = 9.9
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 8/43 (18%)
Query: 907 TELIKSVYKKSNLNPEDINYIITH--------GTGTKLGDPVE 941
+ + L +DI+++I H +LG P
Sbjct: 257 VRIAGEMLAAHELTLDDIDHVICHQPNLRILDAVQEQLGIPQH 299
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.389
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 17,122,441
Number of extensions: 1054604
Number of successful extensions: 3041
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2856
Number of HSP's successfully gapped: 241
Length of query: 1152
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1048
Effective length of database: 3,798,009
Effective search space: 3980313432
Effective search space used: 3980313432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (27.8 bits)