Query psy6163
Match_columns 137
No_of_seqs 112 out of 764
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 19:17:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6163.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6163hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j21_J 50S ribosomal protein L 100.0 4.3E-58 1.5E-62 349.1 11.3 133 1-133 1-134 (141)
2 3u5e_V L17A, YL32, 60S ribosom 100.0 7.3E-55 2.5E-59 330.0 11.2 129 5-133 2-130 (137)
3 1vq8_K 50S ribosomal protein L 100.0 3.4E-53 1.2E-57 319.3 11.6 125 10-134 2-126 (132)
4 3v2d_O 50S ribosomal protein L 100.0 3.9E-50 1.3E-54 299.2 11.6 111 19-133 1-115 (122)
5 3bbo_M Ribosomal protein L14; 100.0 3.2E-50 1.1E-54 299.3 9.4 111 19-133 1-114 (121)
6 1whi_A Ribosomal protein L14; 100.0 1.4E-49 4.8E-54 296.2 10.8 111 19-133 1-115 (122)
7 3r8s_K 50S ribosomal protein L 100.0 4.8E-49 1.7E-53 293.3 9.5 111 19-133 1-116 (122)
8 2ftc_K 39S ribosomal protein L 59.8 12 0.00043 26.2 4.3 33 54-86 3-35 (98)
9 2egj_A Hypothetical protein AQ 58.0 33 0.0011 22.0 6.0 62 54-130 66-127 (128)
10 3qr8_A GPV, baseplate assembly 53.4 37 0.0013 25.7 6.4 66 11-84 9-84 (211)
11 2qqr_A JMJC domain-containing 51.6 29 0.001 24.9 5.2 42 53-104 4-45 (118)
12 3r8s_P 50S ribosomal protein L 48.5 20 0.0007 25.7 4.0 36 51-86 15-51 (114)
13 3r87_A Putative uncharacterize 48.4 53 0.0018 21.7 6.0 64 54-130 69-133 (135)
14 3v2d_T 50S ribosomal protein L 48.1 25 0.00086 26.4 4.5 36 51-86 18-54 (146)
15 2gf6_A Conserved hypothetical 44.7 62 0.0021 21.0 6.8 63 54-130 70-133 (135)
16 1s5u_A Protein YBGC; structura 42.5 63 0.0022 21.0 5.6 64 54-130 71-135 (138)
17 3ck1_A Putative thioesterase; 42.0 50 0.0017 22.0 5.1 66 54-132 71-137 (150)
18 3h9w_A Diguanylate cyclase wit 39.0 42 0.0014 20.5 4.0 29 86-114 70-98 (115)
19 2xk0_A Polycomb protein PCL; t 37.6 60 0.0021 21.4 4.6 43 55-108 16-58 (69)
20 1njk_A Hypothetical protein YB 33.8 52 0.0018 22.5 4.2 63 54-129 85-149 (156)
21 2oaf_A Thioesterase superfamil 32.7 1E+02 0.0035 20.7 5.5 65 54-132 83-148 (151)
22 2cye_A TTHA1846, putative thio 32.6 1E+02 0.0035 19.9 5.7 62 54-130 65-126 (133)
23 2ali_A Hypothetical protein PA 32.3 84 0.0029 21.7 5.1 65 54-131 90-157 (158)
24 2zjr_M 50S ribosomal protein L 32.2 28 0.00097 26.6 2.6 35 52-86 24-59 (166)
25 1v74_A Colicin D; colicin D - 30.4 53 0.0018 23.4 3.6 32 87-118 58-91 (107)
26 2xdp_A Lysine-specific demethy 30.0 42 0.0014 24.3 3.2 42 53-104 5-46 (123)
27 2o5u_A Thioesterase; putative 28.7 1.3E+02 0.0045 20.0 5.6 66 54-132 76-143 (148)
28 3hm0_A Probable thioesterase; 28.4 1.3E+02 0.0044 21.2 5.6 62 54-129 104-165 (167)
29 2w3x_A CALE7; hydrolase, hotdo 28.3 1.3E+02 0.0044 19.8 6.3 68 54-132 70-140 (147)
30 3f1p_A Endothelial PAS domain- 28.0 43 0.0015 20.5 2.6 30 85-114 73-103 (117)
31 3f1p_B ARYL hydrocarbon recept 27.1 46 0.0016 20.5 2.7 29 85-113 77-106 (121)
32 2hlj_A Hypothetical protein; p 26.6 1.2E+02 0.004 20.3 4.9 63 54-129 69-133 (157)
33 3icy_A Sensor protein; sensory 25.8 1E+02 0.0035 18.2 4.1 30 85-114 80-109 (118)
34 1fl0_A Endothelial-monocyte ac 23.9 1.6E+02 0.0054 22.1 5.6 86 20-118 8-103 (171)
35 3ers_X TRNA-binding protein YG 23.9 95 0.0033 21.8 4.1 24 20-43 14-37 (118)
36 2fuj_A Conserved hypothetical 23.8 1.5E+02 0.0052 19.1 6.1 63 54-129 71-136 (137)
37 2oiw_A Putative 4-hydroxybenzo 23.5 1.6E+02 0.0053 19.1 6.0 65 54-132 65-130 (136)
38 3mr0_A Sensory box histidine k 22.8 1.1E+02 0.0037 19.7 4.0 34 85-120 85-118 (142)
39 2hx5_A Hypothetical protein; t 22.0 1.8E+02 0.0063 19.4 5.7 63 54-130 79-142 (152)
40 2nuj_A Thioesterase superfamil 21.5 2E+02 0.0068 19.6 6.4 65 54-131 88-155 (163)
41 3bbo_R Ribosomal protein L19; 21.2 14 0.00047 29.8 -1.0 36 51-86 139-174 (233)
42 1n9l_A PHOT-LOV1, putative blu 20.7 92 0.0032 19.1 3.2 27 88-114 73-99 (109)
43 3u28_C H/ACA ribonucleoprotein 20.2 69 0.0023 23.0 2.7 25 95-122 50-76 (114)
44 3kcp_B Cellulosome anchoring p 20.0 56 0.0019 25.4 2.3 14 54-67 29-42 (187)
No 1
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=4.3e-58 Score=349.11 Aligned_cols=133 Identities=50% Similarity=0.750 Sum_probs=120.2
Q ss_pred CCCCCCCCCCc-ccceeccCcccCCEEEEecCCCCceEEEEEEeccCCccccCCCCCCCCEEEEEEecccCCCccceeeE
Q psy6163 1 MSKRGRGGSAG-AKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDMFVATVKKGKPELRKKVMPA 79 (137)
Q Consensus 1 ~~~~~~~~~~~-~~~~~~~mIq~~T~L~VaDNSGak~v~cI~v~~~~~r~~r~~~a~iGD~I~vsVKk~~~~~Kg~v~kA 79 (137)
||+||+||.++ +++++++|||.+|+|+|+|||||++++||+|+++++.++|+++|++||+|++|||++.|+.|+|+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~mIq~~t~L~VaDNSGAk~v~cI~Vlg~kg~~~r~~~A~iGD~IvvsVKk~~p~~kg~V~kA 80 (141)
T 3j21_J 1 MAKKGAGATRGVSAVRPTRALPVGAYLTVADNSGAKVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRA 80 (141)
T ss_dssp ---------CCCCCSBCCCCBCTTCEEEECSSSSEEEEEEEEETTCCCCTTCCCCBCSSCEEEEEEEEECTTTTTCEEEE
T ss_pred CCccccCCccccccccccceeccCCEEEEccCCCCcEEEEEEEcCCCCcccccccCCcCCEEEEEEEecCCCCcCceEEE
Confidence 89999999998 89999999999999999999999999999999987777888899999999999999999999999999
Q ss_pred EEEeeecceecCCCcEEEeCCceEEEEcCCCCeeceEEecchhHHHHHhcCcCc
Q psy6163 80 VVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKENAQICGHGI 133 (137)
Q Consensus 80 VIVRtKk~~~R~dG~~i~F~~NavVLln~k~~P~GTRI~GpV~~Elr~~~p~~~ 133 (137)
||||||++++|+||++|+|||||+||||++++|+|||||||||+|||++||+.+
T Consensus 81 VIVRtkk~~rR~dGs~i~FddNA~VLin~~g~p~GTRI~GPVarElr~~~~KI~ 134 (141)
T 3j21_J 81 VIIRQRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPVAREAAERWVRIG 134 (141)
T ss_dssp EEEECSSCEECTTSCEECCSSCEEEEBCTTSCBCSSCCCSEECHHHHHHCHHHH
T ss_pred EEEEeCCccCCCCCcEEEcCCcEEEEECCCCCEeeeEEEccccHHHHhhchHHh
Confidence 999999999999999999999999999999999999999999999999998754
No 2
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=100.00 E-value=7.3e-55 Score=330.05 Aligned_cols=129 Identities=71% Similarity=1.108 Sum_probs=125.1
Q ss_pred CCCCCCcccceeccCcccCCEEEEecCCCCceEEEEEEeccCCccccCCCCCCCCEEEEEEecccCCCccceeeEEEEee
Q psy6163 5 GRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDMFVATVKKGKPELRKKVMPAVVIRQ 84 (137)
Q Consensus 5 ~~~~~~~~~~~~~~mIq~~T~L~VaDNSGak~v~cI~v~~~~~r~~r~~~a~iGD~I~vsVKk~~~~~Kg~v~kAVIVRt 84 (137)
++||+++.+++++++||++|+|+|+|||||+.++||+|++++++++|+++|++||+|++|||++.|+.|+|+++||||||
T Consensus 2 ~~~~~~~~~~~~~~gl~~~t~L~VaDNSGAk~v~cI~Vlg~~~r~~r~~~A~iGD~IvvsVK~~~p~~k~~V~~AVIVRt 81 (137)
T 3u5e_V 2 SGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPELRKKVMPAIVVRQ 81 (137)
T ss_dssp CCSSCCSCCCCCCCCEETTCEEEECBSSSBCEEEEEEETTCCCCTTCCCEECTTCEEEEECSSBCTTTTTSCEEEEEEEC
T ss_pred CccccCcceeeecccccCCCEEEEeeCCCCcEEEEEEEeCCCCcccccccCCcCCEEEEEEEECCCCCCCcEEEEEEEEe
Confidence 37999999999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred ecceecCCCcEEEeCCceEEEEcCCCCeeceEEecchhHHHHHhcCcCc
Q psy6163 85 RKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKENAQICGHGI 133 (137)
Q Consensus 85 Kk~~~R~dG~~i~F~~NavVLln~k~~P~GTRI~GpV~~Elr~~~p~~~ 133 (137)
|++++|+||++|+|||||+||||++++|+|||||||||+|||++||+-+
T Consensus 82 kk~~rR~dG~~i~FddNA~Vlin~~g~p~GTrI~GPVarElr~~~~KI~ 130 (137)
T 3u5e_V 82 AKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADLWPRVA 130 (137)
T ss_dssp CSCEECTTSCEEEESSCEEEEBCTTCCBSSSCBCSCBCHHHHTTCHHHH
T ss_pred ccccCcCCCeEEEcCCceEEEECCCCCEeeeEEEcchhHHHHHHhhHHH
Confidence 9999999999999999999999999999999999999999999998754
No 3
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=100.00 E-value=3.4e-53 Score=319.27 Aligned_cols=125 Identities=47% Similarity=0.771 Sum_probs=118.9
Q ss_pred CcccceeccCcccCCEEEEecCCCCceEEEEEEeccCCccccCCCCCCCCEEEEEEecccCCCccceeeEEEEeeeccee
Q psy6163 10 AGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFR 89 (137)
Q Consensus 10 ~~~~~~~~~mIq~~T~L~VaDNSGak~v~cI~v~~~~~r~~r~~~a~iGD~I~vsVKk~~~~~Kg~v~kAVIVRtKk~~~ 89 (137)
.+..++++.|||.+|+|+|+|||||+.++||+|+++++..+|+|.|++||+|++|||++.|+.|+|+++||||||+++++
T Consensus 2 ~~~~~~~~~mIq~~t~l~vaDNSGAk~v~cI~V~g~~g~~~r~p~a~iGD~IvvsVKk~~p~~kg~v~~AVIVRtkk~~r 81 (132)
T 1vq8_K 2 EALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKPIR 81 (132)
T ss_dssp CCCSSEECCCEETTCEEEECBSSSEEEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTTTTTCEEEEEEEECSSCEE
T ss_pred CCcccccccccccCCEEEEeeCCCCcEEEEEEEeCccCcccccCCCccCcEEEEEEEecCCCCCCcEEEEEEEEcCCCcC
Confidence 45688999999999999999999999999999999777777888899999999999999999999999999999999999
Q ss_pred cCCCcEEEeCCceEEEEcCCCCeeceEEecchhHHHHHhcCcCcc
Q psy6163 90 RRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKENAQICGHGIG 134 (137)
Q Consensus 90 R~dG~~i~F~~NavVLln~k~~P~GTRI~GpV~~Elr~~~p~~~~ 134 (137)
|+||++|+|||||+||||++++|+|||||||||+|||++||+.+.
T Consensus 82 R~dG~~i~FddNA~Vlin~~g~p~GTrI~GPVarElr~~~~KI~S 126 (132)
T 1vq8_K 82 RPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQRFGSVAS 126 (132)
T ss_dssp CTTSCEEEESSCEEEEECTTSCBSSSCBCSEECHHHHHHSHHHHT
T ss_pred cCCCcEEEeCCceEEEECCCCCEeEEEEEcCcCHHHHhcccHhhh
Confidence 999999999999999999999999999999999999999997543
No 4
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=100.00 E-value=3.9e-50 Score=299.20 Aligned_cols=111 Identities=37% Similarity=0.517 Sum_probs=105.2
Q ss_pred CcccCCEEEEecCCCCceEEEEEEeccCCccccCCCCCCCCEEEEEEecccCCC---ccceeeEEEEeeecceecCCCcE
Q psy6163 19 ALPVGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDMFVATVKKGKPEL---RKKVMPAVVIRQRKPFRRRDGVF 95 (137)
Q Consensus 19 mIq~~T~L~VaDNSGak~v~cI~v~~~~~r~~r~~~a~iGD~I~vsVKk~~~~~---Kg~v~kAVIVRtKk~~~R~dG~~ 95 (137)
|||.+|+|+|+|||||+.++||+||+++++ ++|++||+|++|||++.|+. |||+++||||||+++++|+||++
T Consensus 1 MIq~~t~L~vaDNSGAk~v~cI~Vlg~~~r----r~a~iGD~IvvsVK~~~p~~~vKkg~v~~AVIVRtkk~~rR~dG~~ 76 (122)
T 3v2d_O 1 MIQPQTYLEVADNTGARKIMCIRVLKGSNA----KYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRPDGSA 76 (122)
T ss_dssp CBCTTCEEEECBSSSEEEEEEEEEESTTTC----CCBCTTCEEEEEEEEECSSSSSCTTCEEEEEEEECSSCEECTTSCE
T ss_pred CCCCCCEEEEeeCCCCcEEEEEEEeCCCCC----cccCCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCccCCCCCcE
Confidence 999999999999999999999999997554 27999999999999999986 68999999999999999999999
Q ss_pred EEeCCceEEEEcCCCCeeceEEecchhHHHHHh-cCcCc
Q psy6163 96 IYFEDNAGVIVNNKGEMKGSAITGPVAKENAQI-CGHGI 133 (137)
Q Consensus 96 i~F~~NavVLln~k~~P~GTRI~GpV~~Elr~~-~p~~~ 133 (137)
|+|||||+||+|++++|+|||||||||+|||++ ||+.+
T Consensus 77 i~FddNa~Vlin~~~~p~GTrI~GpVarElr~~~~~KI~ 115 (122)
T 3v2d_O 77 IRFDDNAAVIINNQLEPRGTRVFGPVARELREKGFMKIV 115 (122)
T ss_dssp EEESSCEEEEECTTSCBSSSCBCSCBCTHHHHTTCHHHH
T ss_pred EEcCCcEEEEECCCCCEeeeEEEccchHHHhhCCCchhh
Confidence 999999999999999999999999999999997 98754
No 5
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=3.2e-50 Score=299.33 Aligned_cols=111 Identities=36% Similarity=0.595 Sum_probs=105.2
Q ss_pred CcccCCEEEEecCCCCceEEEEEEeccCCccccCCCCCCCCEEEEEEecccCCC---ccceeeEEEEeeecceecCCCcE
Q psy6163 19 ALPVGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDMFVATVKKGKPEL---RKKVMPAVVIRQRKPFRRRDGVF 95 (137)
Q Consensus 19 mIq~~T~L~VaDNSGak~v~cI~v~~~~~r~~r~~~a~iGD~I~vsVKk~~~~~---Kg~v~kAVIVRtKk~~~R~dG~~ 95 (137)
|||.+|+|+|+|||||+.++||+|++++.+ .+|++||+|++|||++.|+. |||+++||||||+++++|+||++
T Consensus 1 MIq~~t~l~vaDNSGAk~v~cI~Vlgg~~~----r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~ 76 (121)
T 3bbo_M 1 MIQPQTHLNVADNSGARELMCIRIIGASNR----RYARIGDVIVAVIKEAIPNTPLERSEVIRAVVVRTCKELKRDNGMI 76 (121)
T ss_dssp CCCSSCEEEECSSSSEEEEEEEEECSSSCC----CCCCTTCEEEEEEEEECSSSSSCSSCEEEEEEEECSSCEECTTSCE
T ss_pred CCCccCEEEEeeCCCCcEEEEEEEcCCCCc----cccccCcEEEEEEEEccCCCccccCcEEEEEEEEecCccccCCCCE
Confidence 999999999999999999999999986443 26999999999999999987 89999999999999999999999
Q ss_pred EEeCCceEEEEcCCCCeeceEEecchhHHHHHhcCcCc
Q psy6163 96 IYFEDNAGVIVNNKGEMKGSAITGPVAKENAQICGHGI 133 (137)
Q Consensus 96 i~F~~NavVLln~k~~P~GTRI~GpV~~Elr~~~p~~~ 133 (137)
|+|||||+||+|++++|+|||||||||+|||++||+.+
T Consensus 77 i~FddNa~Vlin~~g~p~GTrI~GPVarElr~~~~KI~ 114 (121)
T 3bbo_M 77 IRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIV 114 (121)
T ss_dssp ECCSSCEEEECCTTSSCSSSCCCSCCCGGGTTTCHHHH
T ss_pred EEeCCceEEEECCCCCEeEeEEEcCcCHHHHhcchHhh
Confidence 99999999999999999999999999999999998754
No 6
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=100.00 E-value=1.4e-49 Score=296.20 Aligned_cols=111 Identities=39% Similarity=0.580 Sum_probs=104.5
Q ss_pred CcccCCEEEEecCCCCceEEEEEEeccCCccccCCCCCCCCEEEEEEecccCCC---ccceeeEEEEeeecceecCCCcE
Q psy6163 19 ALPVGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDMFVATVKKGKPEL---RKKVMPAVVIRQRKPFRRRDGVF 95 (137)
Q Consensus 19 mIq~~T~L~VaDNSGak~v~cI~v~~~~~r~~r~~~a~iGD~I~vsVKk~~~~~---Kg~v~kAVIVRtKk~~~R~dG~~ 95 (137)
|||.+|+|+|+|||||+.++||++++++.+ .+|++||+|++|||++.|+. |||+++||||||+++++|+||++
T Consensus 1 MIq~~t~l~vaDNSGAk~v~cI~vlgg~~~----r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~ 76 (122)
T 1whi_A 1 MIQQESRLKVADNSGAREVLVIKVLGGSGR----RYANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRPDGSY 76 (122)
T ss_dssp CBCTTCEEEECBSSSEEEEEEEEECSSTTC----CCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCE
T ss_pred CCCccCEEEEeECCCCcEEEEEEEcCCCcc----cccccCeEEEEEEEEecCCCccccccEEEEEEEEecCceecCCCCE
Confidence 999999999999999999999999996443 26999999999999999986 59999999999999999999999
Q ss_pred EEeCCceEEEEcCCCCeeceEEecchhHHHHH-hcCcCc
Q psy6163 96 IYFEDNAGVIVNNKGEMKGSAITGPVAKENAQ-ICGHGI 133 (137)
Q Consensus 96 i~F~~NavVLln~k~~P~GTRI~GpV~~Elr~-~~p~~~ 133 (137)
|+|||||+||+|++++|+|||||||||+|||+ +||+.+
T Consensus 77 i~FddNa~Vlin~~g~p~GTrI~GPVarElr~k~~~KI~ 115 (122)
T 1whi_A 77 IRFDENACVIIRDDKSPRGTRIFGPVARELRDKDFMKII 115 (122)
T ss_dssp ECCSSCEEEEECTTSCBSSSCBCSCBCTHHHHTTCHHHH
T ss_pred EEeCCceEEEECCCCCEeeeEEEccchHHHhhcCCcchh
Confidence 99999999999999999999999999999998 798754
No 7
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=100.00 E-value=4.8e-49 Score=293.32 Aligned_cols=111 Identities=37% Similarity=0.540 Sum_probs=104.5
Q ss_pred CcccCCEEEEecCCCCceEEEEEEeccCCccccCCCCCCCCEEEEEEecccCCC---ccceeeEEEEeeecceecCCCcE
Q psy6163 19 ALPVGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDMFVATVKKGKPEL---RKKVMPAVVIRQRKPFRRRDGVF 95 (137)
Q Consensus 19 mIq~~T~L~VaDNSGak~v~cI~v~~~~~r~~r~~~a~iGD~I~vsVKk~~~~~---Kg~v~kAVIVRtKk~~~R~dG~~ 95 (137)
|||.+|+|+|+|||||++++||+||+++++ ++|++||+|++|||++.|+. |||+++||||||+++++|+||++
T Consensus 1 MIq~~t~L~vaDNSGAk~v~cI~Vlgg~~r----~~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~ 76 (122)
T 3r8s_K 1 MIQEQTMLNVADNSGARRVMCIKVLGGSHR----RYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSV 76 (122)
T ss_dssp CBCTTCEEEECBTTSEEEEEEEEECSSSSC----CCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCE
T ss_pred CCCCCCEEEEccCCCCceEEEEEEeCCCCC----CcccCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCcCCCCCCcE
Confidence 999999999999999999999999997554 27999999999999999986 68999999999999999999999
Q ss_pred EEeCCceEEEEcCC-CCeeceEEecchhHHHH-HhcCcCc
Q psy6163 96 IYFEDNAGVIVNNK-GEMKGSAITGPVAKENA-QICGHGI 133 (137)
Q Consensus 96 i~F~~NavVLln~k-~~P~GTRI~GpV~~Elr-~~~p~~~ 133 (137)
|+|||||+||||++ ++|+|||||||||+||| ++||+.+
T Consensus 77 i~FddNa~Vlin~~~g~p~GTrI~GpVarElR~~~~~KI~ 116 (122)
T 3r8s_K 77 IRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKII 116 (122)
T ss_dssp EEESSCEEEEEETTTEEESCSCBCSCCCGGGGSGGGHHHH
T ss_pred EEcCCceEEEEeCCCCCEeeeEEEccccHHHhHcCCchhh
Confidence 99999999999999 99999999999999997 6898754
No 8
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=59.79 E-value=12 Score=26.15 Aligned_cols=33 Identities=9% Similarity=0.055 Sum_probs=25.9
Q ss_pred CCCCCCEEEEEEecccCCCccceeeEEEEeeec
Q psy6163 54 AAGSGDMFVATVKKGKPELRKKVMPAVVIRQRK 86 (137)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~kAVIVRtKk 86 (137)
.-.+||+|.|.++-.-.+.+-|.+.++|+.-+.
T Consensus 3 ~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~ 35 (98)
T 2ftc_K 3 EFYVGSILRVTTADPYASGKISQFLGICIQRSG 35 (98)
T ss_pred ccCCCCEEEEEEEECCCceEeeeEEEEEEEEEC
Confidence 346899999999876434466999999998664
No 9
>2egj_A Hypothetical protein AQ_1494; structural genomics; 1.80A {Aquifex aeolicus} PDB: 2egi_A 2egr_A
Probab=57.95 E-value=33 Score=22.02 Aligned_cols=62 Identities=10% Similarity=0.141 Sum_probs=34.1
Q ss_pred CCCCCCEEEEEEecccCCCccceeeEEEEeeecceecCCCcEEEeCCceEEEEcCCCCeeceEEecchhHHHHHhcC
Q psy6163 54 AAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKENAQICG 130 (137)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~kAVIVRtKk~~~R~dG~~i~F~~NavVLln~k~~P~GTRI~GpV~~Elr~~~p 130 (137)
.+..||.|.+...-.....+ .+....-+ .+ ||..+---+-..|++ +++.|. |+|.|+++.+.
T Consensus 66 ~~~~gd~v~v~~~v~~~~~~-~~~~~~~i------~~-~g~~~a~~~~~~v~~-~~~r~~------~ip~~~~~~l~ 127 (128)
T 2egj_A 66 PLFYDDVFEVHLNLEELSRF-TFTFSYIV------FK-EDIAVAKANTKHCMV-KNGKIV------SIPKEVLEVLK 127 (128)
T ss_dssp CCCTTCEEEEEEEEEEECSS-EEEEEEEE------EE-TTEEEEEEEEEEEEE-ETTEEC------CCCHHHHHHHC
T ss_pred CCcCCCEEEEEEEEEEeCCc-EEEEEEEE------EE-CCEEEEEEEEEEEEE-eCCcEe------cCCHHHHHHhh
Confidence 58899999998753322221 12111111 12 565443334444555 555553 88999998763
No 10
>3qr8_A GPV, baseplate assembly protein V; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, tail spike, viral protein; HET: MSE; 2.03A {Enterobacteria phage P2}
Probab=53.41 E-value=37 Score=25.69 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=40.5
Q ss_pred cccceeccCcccCCEEEEecCCCCce----------EEEEEEeccCCccccCCCCCCCCEEEEEEecccCCCccceeeEE
Q psy6163 11 GAKFRISLALPVGAVINCADNTGAKN----------LFVIAVQGVKGRLNRLPAAGSGDMFVATVKKGKPELRKKVMPAV 80 (137)
Q Consensus 11 ~~~~~~~~mIq~~T~L~VaDNSGak~----------v~cI~v~~~~~r~~r~~~a~iGD~I~vsVKk~~~~~Kg~v~kAV 80 (137)
....++..||+.++...|-+..+--. ++.+....+..+. +-.-.+||.++|..- -++.-.++
T Consensus 9 ~l~R~l~nlir~G~V~~vd~~~~rvrV~~~~~~t~wl~~~~~~ag~~~~--~~~P~vGeqV~v~f~------~Gd~~~gv 80 (211)
T 3qr8_A 9 ELARALRNMIRTGIIVETDLNAGRCRVQTGGMCTDWLQWLTHRAGRSRT--WWAPSVGEQVLILAV------GGELDTAF 80 (211)
T ss_dssp THHHHHHHHEEEEEEEEEETTTTEEEEEETTEECCCEEECCSCBSSSBC--CCCCCTTCEEEEEEC------CTTTCCEE
T ss_pred HHHHHHHhCcEEEEEEEEECCCCEEEEEeCCccceeEEeEcccccCCce--EeCCCCCCEEEEEeC------CCccCccE
Confidence 34567788888888877765554322 3333322222221 224579999999864 25777888
Q ss_pred EEee
Q psy6163 81 VIRQ 84 (137)
Q Consensus 81 IVRt 84 (137)
|+..
T Consensus 81 Vlg~ 84 (211)
T 3qr8_A 81 VLPG 84 (211)
T ss_dssp EEEE
T ss_pred EEee
Confidence 8886
No 11
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=51.62 E-value=29 Score=24.94 Aligned_cols=42 Identities=12% Similarity=0.119 Sum_probs=30.8
Q ss_pred CCCCCCCEEEEEEecccCCCccceeeEEEEeeecceecCCCcEEEeCCceEE
Q psy6163 53 PAAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 104 (137)
Q Consensus 53 ~~a~iGD~I~vsVKk~~~~~Kg~v~kAVIVRtKk~~~R~dG~~i~F~~NavV 104 (137)
+..++||.|.+.= .-+..++|.|++.+.+. ...|.|+||+.-
T Consensus 4 ~~v~vGq~V~akh------~ngryy~~~V~~~~~~~----~y~V~F~DgS~s 45 (118)
T 2qqr_A 4 QSITAGQKVISKH------KNGRFYQCEVVRLTTET----FYEVNFDDGSFS 45 (118)
T ss_dssp SCCCTTCEEEEEC------TTSSEEEEEEEEEEEEE----EEEEEETTSCEE
T ss_pred ceeccCCEEEEEC------CCCCEEeEEEEEEeeEE----EEEEEcCCCCcc
Confidence 3578999999521 24689999999987664 345888888764
No 12
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=48.54 E-value=20 Score=25.73 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=27.9
Q ss_pred cCCCCCCCCEEEEEEecccCC-CccceeeEEEEeeec
Q psy6163 51 RLPAAGSGDMFVATVKKGKPE-LRKKVMPAVVIRQRK 86 (137)
Q Consensus 51 r~~~a~iGD~I~vsVKk~~~~-~Kg~v~kAVIVRtKk 86 (137)
-.|.-.+||+|.|.++-...+ .+-|.|.++|+.-+.
T Consensus 15 ~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~ 51 (114)
T 3r8s_P 15 DVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRN 51 (114)
T ss_dssp CCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEEC
T ss_pred CCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEEC
Confidence 346788999999999865433 356899999998764
No 13
>3r87_A Putative uncharacterized protein; unknown function; 1.05A {Photobacterium profundum}
Probab=48.39 E-value=53 Score=21.73 Aligned_cols=64 Identities=11% Similarity=0.034 Sum_probs=37.3
Q ss_pred CCCCCCEEEEEEecccCCCccceeeEEEEeeecceecC-CCcEEEeCCceEEEEcCCCCeeceEEecchhHHHHHhcC
Q psy6163 54 AAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRR-DGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKENAQICG 130 (137)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~kAVIVRtKk~~~R~-dG~~i~F~~NavVLln~k~~P~GTRI~GpV~~Elr~~~p 130 (137)
.+..||.|.+...-...... .+. + ...+.+. ||..+---+-..|.+|.++.|. |+|.|+++.+.
T Consensus 69 p~~~gd~v~v~t~v~~~~~~-s~~----~--~~~i~~~~~g~~~a~~~~~~v~vd~~~r~~------~iP~~~~~~l~ 133 (135)
T 3r87_A 69 GVEFAEICDIRTSFTLDGKY-KTL----W--RQEVWRPGASRAAVIGDIEMVCLDKEKRLQ------PVPADILASMM 133 (135)
T ss_dssp CCCTTCEEEEEEEEEEETTT-EEE----E--EEEEECTTCSSCSEEEEEEEEEECTTCCEE------CCCHHHHHHHH
T ss_pred cccCCCEEEEEEEEEEeCCE-EEE----E--EEEEEECCCCEEEEEEEEEEEEECCCCCEe------cCCHHHHHHhc
Confidence 58899999998753322211 111 1 1222333 5654444455567788665553 89999998753
No 14
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=48.12 E-value=25 Score=26.36 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=27.9
Q ss_pred cCCCCCCCCEEEEEEecccCCC-ccceeeEEEEeeec
Q psy6163 51 RLPAAGSGDMFVATVKKGKPEL-RKKVMPAVVIRQRK 86 (137)
Q Consensus 51 r~~~a~iGD~I~vsVKk~~~~~-Kg~v~kAVIVRtKk 86 (137)
-.|.-.+||+|.|.++-..-+. +-|.|.+||+.-+.
T Consensus 18 diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~ 54 (146)
T 3v2d_T 18 DLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRR 54 (146)
T ss_dssp CCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEEC
T ss_pred cCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEEC
Confidence 3467789999999998654332 56899999998764
No 15
>2gf6_A Conserved hypothetical protein; putative thioesterase, structural genomics, joint center for structural genomics, JCSG; HET: COA; 1.91A {Sulfolobus solfataricus} SCOP: d.38.1.1
Probab=44.72 E-value=62 Score=20.99 Aligned_cols=63 Identities=11% Similarity=0.035 Sum_probs=36.3
Q ss_pred CCCCCCEEEEEEecccCCCccceeeEEEEeeecceecCCCcEEEeCCceEEEEcC-CCCeeceEEecchhHHHHHhcC
Q psy6163 54 AAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNN-KGEMKGSAITGPVAKENAQICG 130 (137)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~kAVIVRtKk~~~R~dG~~i~F~~NavVLln~-k~~P~GTRI~GpV~~Elr~~~p 130 (137)
.+..||.|.+...-.....+ .+....-+. .||..+---.-..|.+|. ++.|. |+|.|+++.+.
T Consensus 70 ~~~~gd~v~v~~~v~~~~~~-s~~~~~~i~-------~~g~~~a~~~~~~v~vd~~~~r~~------~ip~~~~~~l~ 133 (135)
T 2gf6_A 70 PVKLGDKLTVLLNPKILSNK-TIKFEFKVL-------KDGELTTEGYVIQIAINPKIWKST------EMPKEIMDKLS 133 (135)
T ss_dssp CCCTTCEEEEEEEEEECSSS-EEEEEEEEE-------ETTEEEEEEEEEEEEEETTTTEEC------CCCHHHHHHHT
T ss_pred CCcCCCEEEEEEEEEEeCCc-EEEEEEEEE-------ECCEEEEEEEEEEEEEecccCcee------cCCHHHHHHhh
Confidence 58899999988764333221 222222221 156544333444566775 35554 89999998764
No 16
>1s5u_A Protein YBGC; structural genomics, hypothetical protein, thioesterase fold, PSI, protein structure initiative; 1.70A {Escherichia coli} SCOP: d.38.1.1
Probab=42.51 E-value=63 Score=21.03 Aligned_cols=64 Identities=11% Similarity=-0.009 Sum_probs=35.9
Q ss_pred CCCCCCEEEEEEecccCCCccceeeEEEEeeecceecCCCcEEEeCCceEEEEcCC-CCeeceEEecchhHHHHHhcC
Q psy6163 54 AAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNK-GEMKGSAITGPVAKENAQICG 130 (137)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~kAVIVRtKk~~~R~dG~~i~F~~NavVLln~k-~~P~GTRI~GpV~~Elr~~~p 130 (137)
.+..||.|.+...-.....+ .+....-+. .+ ||..+---.-..|++|.+ +.|. |+|.|+++.+.
T Consensus 71 ~~~~gd~v~v~~~v~~~~~~-s~~~~~~i~-----~~-~g~~~a~~~~~~v~vd~~~~r~~------~ip~~~~~~l~ 135 (138)
T 1s5u_A 71 PARLDDMLEIQTEITSMRGT-SLVFTQRIV-----NA-ENTLLNEAEVLVVCVDPLKMKPR------ALPKSIVAEFK 135 (138)
T ss_dssp CCCTTCEEEEEEEEEEECSS-EEEEEEEEE-----CT-TCCEEEEEEEEEEEEETTTTEEC------CCCHHHHHHC-
T ss_pred cccCCCEEEEEEEEEEeCCe-EEEEEEEEE-----ec-CCEEEEEEEEEEEEEeCCCCCEe------cCCHHHHHHhh
Confidence 58899999988754332221 121111110 12 565544444556677754 5553 88999998774
No 17
>3ck1_A Putative thioesterase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.74A {Ralstonia eutropha}
Probab=42.05 E-value=50 Score=22.02 Aligned_cols=66 Identities=15% Similarity=0.073 Sum_probs=35.7
Q ss_pred CCCCCCEEEEEEecccCCCccceeeEEEEeeecceecCCCcEEEeCCceEEEEc-CCCCeeceEEecchhHHHHHhcCcC
Q psy6163 54 AAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVN-NKGEMKGSAITGPVAKENAQICGHG 132 (137)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~kAVIVRtKk~~~R~dG~~i~F~~NavVLln-~k~~P~GTRI~GpV~~Elr~~~p~~ 132 (137)
.+..||.|.+...-.....+ .+.... .+.+.||..+---.-..|.+| +++.|. |+|.|+++.+...
T Consensus 71 ~~~~gd~v~v~~~v~~~~~~-s~~~~~------~i~~~~g~~~a~~~~~~v~vd~~~~r~~------~ip~~~~~~l~~~ 137 (150)
T 3ck1_A 71 PSRLGETLTRELRVVKLGQS-SFTVQV------RFMGPDSGLRLEVTQRLVCVDTDKIAPR------PLPDPVRQAMATY 137 (150)
T ss_dssp CCBTTCEEEEEEEEEEECSS-EEEEEE------EEECTTSCEEEEEEEEEECEEETTEEEC------CCCHHHHHHHHTT
T ss_pred CCcCCCEEEEEEEEEEEcCc-EEEEEE------EEEeCCCEEEEEEEEEEEEEeCCCCccc------cCCHHHHHHHHHh
Confidence 58899999988753322221 111111 112235654443344456666 334443 8999999876543
No 18
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=38.97 E-value=42 Score=20.50 Aligned_cols=29 Identities=24% Similarity=0.512 Sum_probs=23.8
Q ss_pred cceecCCCcEEEeCCceEEEEcCCCCeec
Q psy6163 86 KPFRRRDGVFIYFEDNAGVIVNNKGEMKG 114 (137)
Q Consensus 86 k~~~R~dG~~i~F~~NavVLln~k~~P~G 114 (137)
..+.++||.+.-+...+.++.+.+|.|.+
T Consensus 70 ~r~~~~dG~~~w~~~~~~~~~d~~G~~~~ 98 (115)
T 3h9w_A 70 YRALHRDGHYVWIRDVVHVVRDDSGEVEA 98 (115)
T ss_dssp EEEECTTSCEEEEEEEEEEEECTTSCEEE
T ss_pred EEEEcCCCCEEEEEEEEEEEECCCCCEEE
Confidence 34568899998888899999999998853
No 19
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=37.61 E-value=60 Score=21.45 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=31.8
Q ss_pred CCCCCEEEEEEecccCCCccceeeEEEEeeecceecCCCcEEEeCCceEEEEcC
Q psy6163 55 AGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNN 108 (137)
Q Consensus 55 a~iGD~I~vsVKk~~~~~Kg~v~kAVIVRtKk~~~R~dG~~i~F~~NavVLln~ 108 (137)
-..||-|++--.. |..|-+-||.+. +.-..|+|+||+-.-+.-
T Consensus 16 ~~~geDVL~rw~D------G~fYLGtIVd~~-----~~~ClV~FeD~S~~Wv~~ 58 (69)
T 2xk0_A 16 YALQEDVFIKCND------GRFYLGTIIDQT-----SDQYLIRFDDQSEQWCEP 58 (69)
T ss_dssp CCTTCEEEEECTT------SCEEEEEEEEEC-----SSCEEEEETTCCEEEECT
T ss_pred cccCCeEEEEecC------CCEEEEEEEecC-----CceEEEEecCCcceeeeH
Confidence 4678888876543 788999997655 445689999998776643
No 20
>1njk_A Hypothetical protein YBAW; structural genomics, thioesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: d.38.1.1
Probab=33.77 E-value=52 Score=22.50 Aligned_cols=63 Identities=10% Similarity=0.006 Sum_probs=35.4
Q ss_pred CCCCCCEEEEEEecccCCCccceeeEEEEeeeccee-cCCCcEEEeCCceEEEEcC-CCCeeceEEecchhHHHHHhc
Q psy6163 54 AAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFR-RRDGVFIYFEDNAGVIVNN-KGEMKGSAITGPVAKENAQIC 129 (137)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~kAVIVRtKk~~~-R~dG~~i~F~~NavVLln~-k~~P~GTRI~GpV~~Elr~~~ 129 (137)
.+..||.|.+...-.....+. +. +. ..+. ..||..+---.-..|.+|. ++.|. |+|.|+++.+
T Consensus 85 p~~~gd~l~v~~~v~~~g~~s-~~----~~--~~i~~~~~g~~~a~~~~~~v~vd~~~~r~~------~iP~~~~~~l 149 (156)
T 1njk_A 85 PAVLSDLLTITSQLQQLNGKS-GI----LS--QVITLEPEGQVVADALITFVCIDLKTQKAL------ALEGELREKL 149 (156)
T ss_dssp CCCTTCEEEEEEEEEEEETTE-EE----EE--EEEEETTTTEEEEEEEEEEEEEETTTTEEE------CSSTTTTHHH
T ss_pred CCCCCCEEEEEEEEEEeCCeE-EE----EE--EEEEECCCCeEEEEEEEEEEEEECCCCccc------CCCHHHHHHH
Confidence 588999999887532221111 11 11 1121 2366554444555667775 45564 8898888765
No 21
>2oaf_A Thioesterase superfamily; YP_508616.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; HET: CIT PGE; 2.00A {Jannaschia SP} SCOP: d.38.1.1
Probab=32.68 E-value=1e+02 Score=20.68 Aligned_cols=65 Identities=9% Similarity=0.023 Sum_probs=35.6
Q ss_pred CCCCCCEEEEEEecccCCCccceeeEEEEeeecceecCCCcEEEeCCceEEEEcCC-CCeeceEEecchhHHHHHhcCcC
Q psy6163 54 AAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNK-GEMKGSAITGPVAKENAQICGHG 132 (137)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~kAVIVRtKk~~~R~dG~~i~F~~NavVLln~k-~~P~GTRI~GpV~~Elr~~~p~~ 132 (137)
.+..||.|.+...-.....+ .+....-+. + ||..+---+-..|.+|.+ +.|. |+|.|+++.+...
T Consensus 83 ~~~~gd~v~v~t~v~~~~~~-s~~~~~~i~------~-~g~~~a~~~~~~v~vd~~~~r~~------~ip~~~~~~l~~~ 148 (151)
T 2oaf_A 83 PVTPRHILKCHTWPTRLGTK-SITFRVDGV------Q-DGVTCFVGAFTCVFTIADQFKSQ------PAPDHLRALIEPH 148 (151)
T ss_dssp CCCTTSCEEEEEEEEEECSS-EEEEEEEEE------E-TTEEEEEEEEEEEEEEGGGTEEE------CCCHHHHHHHGGG
T ss_pred CCcCCCEEEEEEEEEEeCCc-EEEEEEEEE------E-CCEEEEEEEEEEEEEcCCCCccc------CCCHHHHHHHHhh
Confidence 58899999988754332221 122111111 1 454433334445667643 4443 8899999877543
No 22
>2cye_A TTHA1846, putative thioesterase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: COA; 1.90A {Thermus thermophilus} SCOP: d.38.1.1
Probab=32.59 E-value=1e+02 Score=19.91 Aligned_cols=62 Identities=15% Similarity=0.018 Sum_probs=33.0
Q ss_pred CCCCCCEEEEEEecccCCCccceeeEEEEeeecceecCCCcEEEeCCceEEEEcCCCCeeceEEecchhHHHHHhcC
Q psy6163 54 AAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKENAQICG 130 (137)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~kAVIVRtKk~~~R~dG~~i~F~~NavVLln~k~~P~GTRI~GpV~~Elr~~~p 130 (137)
.+..||.|.+...-.....+.-.+..-|. + +|..+---.-..|.+| ++.| -|+|.|+++.+.
T Consensus 65 ~~~~gd~l~v~~~v~~~~~~s~~~~~~i~-------~-~g~~~a~~~~~~v~~d-~~~~------~~~p~~~~~~l~ 126 (133)
T 2cye_A 65 PILLGDEVFVGVRTVGLGRSSLRMEHLVT-------A-NGESAAKGLGVLVWLE-GGRP------APLPEAIRERIR 126 (133)
T ss_dssp CCBTTCEEEEEEEEEEECSSEEEEEEEEE-------E-TTEEEEEEEEEEEEEE-TTEE------CCCCHHHHHHHH
T ss_pred cccCCCEEEEEEEEEEeCCcEEEEEEEEE-------E-CCEEEEEEEEEEEEEe-CCCc------ccCCHHHHHHHH
Confidence 57899999988753333222211111111 1 2443333334456666 4444 388999998764
No 23
>2ali_A Hypothetical protein PA2801; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.75A {Pseudomonas aeruginosa} SCOP: d.38.1.1 PDB: 3qy3_A
Probab=32.30 E-value=84 Score=21.68 Aligned_cols=65 Identities=11% Similarity=-0.025 Sum_probs=35.5
Q ss_pred CCCCCCEEEEEEecccCCCccceeeEEEEeeecceecC-C-CcEEEeCCceEEEEcC-CCCeeceEEecchhHHHHHhcC
Q psy6163 54 AAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRR-D-GVFIYFEDNAGVIVNN-KGEMKGSAITGPVAKENAQICG 130 (137)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~kAVIVRtKk~~~R~-d-G~~i~F~~NavVLln~-k~~P~GTRI~GpV~~Elr~~~p 130 (137)
.+..||.|.+...-.....+ .+....- +.+. | |..+---+-..|++|. ++.|. |+|.|+++.+.
T Consensus 90 p~~~gd~v~v~t~v~~~~~~-s~~~~~~------i~~~~~~g~~~a~a~~~~v~vd~~~~rp~------~iP~~~~~~l~ 156 (158)
T 2ali_A 90 PVVHPATVVVELYAGRLGTS-SLVLEHR------LHTLEDPQGTYGEGHCKLVWVRHAENRST------PVPDSIRAAIA 156 (158)
T ss_dssp CCCSSCEEEEEEEEEEECSS-EEEEEEE------EEESSCTTSCCEEEEEEEEEEEGGGTEEC------CCCHHHHHHHC
T ss_pred cccCCCEEEEEEEEEEecCc-EEEEEEE------EEECCCCCEEEEEEEEEEEEEECCCCccc------CCCHHHHHHhh
Confidence 58899999988753222211 1211111 1222 4 5443333444566775 35554 89999998765
Q ss_pred c
Q psy6163 131 H 131 (137)
Q Consensus 131 ~ 131 (137)
.
T Consensus 157 ~ 157 (158)
T 2ali_A 157 G 157 (158)
T ss_dssp -
T ss_pred c
Confidence 3
No 24
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=32.24 E-value=28 Score=26.58 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=27.2
Q ss_pred CCCCCCCCEEEEEEecccCC-CccceeeEEEEeeec
Q psy6163 52 LPAAGSGDMFVATVKKGKPE-LRKKVMPAVVIRQRK 86 (137)
Q Consensus 52 ~~~a~iGD~I~vsVKk~~~~-~Kg~v~kAVIVRtKk 86 (137)
.|.-.+||+|.|.++-..-+ .+-|.|.+||+.-+.
T Consensus 24 iP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~ 59 (166)
T 2zjr_M 24 LPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAING 59 (166)
T ss_dssp CCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCC
T ss_pred CCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeC
Confidence 46788999999999865433 367899999998654
No 25
>1v74_A Colicin D; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: d.243.1.1 PDB: 1tfo_A 1tfk_A*
Probab=30.39 E-value=53 Score=23.43 Aligned_cols=32 Identities=28% Similarity=0.501 Sum_probs=24.7
Q ss_pred ceecCCCcEEEe--CCceEEEEcCCCCeeceEEe
Q psy6163 87 PFRRRDGVFIYF--EDNAGVIVNNKGEMKGSAIT 118 (137)
Q Consensus 87 ~~~R~dG~~i~F--~~NavVLln~k~~P~GTRI~ 118 (137)
.+++..++.+.| ..|-+|+++.+++.++-=.+
T Consensus 58 TYR~~~dskVy~N~~T~~~Viid~~g~FvsGwKl 91 (107)
T 1v74_A 58 TYRREKGSKVYFNPNTMNVVIIKSNGEFLSGWKI 91 (107)
T ss_dssp BCTTSTTCEEEECTTTCEEEEECTTSCEEEEEEC
T ss_pred eeecCCCcEEEEeCCCCeEEEEcCCCCEEEEEEc
Confidence 345667899999 78899999999998654433
No 26
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=30.03 E-value=42 Score=24.27 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=30.3
Q ss_pred CCCCCCCEEEEEEecccCCCccceeeEEEEeeecceecCCCcEEEeCCceEE
Q psy6163 53 PAAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 104 (137)
Q Consensus 53 ~~a~iGD~I~vsVKk~~~~~Kg~v~kAVIVRtKk~~~R~dG~~i~F~~NavV 104 (137)
+..++||.|.+. ..-+..++|.|++.+.+.- ..|.|+||+.-
T Consensus 5 ~~v~vGq~V~ak------~~ngryy~~~V~~~~~~~~----y~V~F~DgS~s 46 (123)
T 2xdp_A 5 KVISVGQTVITK------HRNTRYYSCRVMAVTSQTF----YEVMFDDGSFS 46 (123)
T ss_dssp CCCCTTCCCCCC------CCCCCCCCCEEEEEEEEEE----EEEEETTSCEE
T ss_pred cccccCCEEEEE------CCCCcEEeEEEEEEeeEEE----EEEEcCCCCcc
Confidence 357889988722 1137899999999986543 45888888876
No 27
>2o5u_A Thioesterase; putative thioesterese,, hydrolase; 1.91A {Pseudomonas aeruginosa} SCOP: d.38.1.1 PDB: 2av9_A 2o6t_A 2o6b_A 2o6u_A
Probab=28.69 E-value=1.3e+02 Score=19.99 Aligned_cols=66 Identities=6% Similarity=-0.102 Sum_probs=37.0
Q ss_pred CCCCCCEEEEEEecccCCCccceeeEEEEeeecceec-CCCcEEEeCCceEEEEcC-CCCeeceEEecchhHHHHHhcCc
Q psy6163 54 AAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRR-RDGVFIYFEDNAGVIVNN-KGEMKGSAITGPVAKENAQICGH 131 (137)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~kAVIVRtKk~~~R-~dG~~i~F~~NavVLln~-k~~P~GTRI~GpV~~Elr~~~p~ 131 (137)
.+..||.|.+...-.....+ .+.... .+.+ .||..+---.-..|.+|. ++.|. |+|.|+++.+..
T Consensus 76 ~~~~gd~v~v~t~v~~~~~~-s~~~~~------~i~~~~~g~~~a~~~~~~v~vd~~~~r~~------~ip~~~~~~l~~ 142 (148)
T 2o5u_A 76 PVAFPQRIEMGLRVARLGNS-SVQYEL------ALFLEGQREACAAGRFVHVFVERRSSRPV------AIPQELRDALAA 142 (148)
T ss_dssp CCCTTSCEEEEEEEEEECSS-EEEEEE------EEEESSCCBCSEEEEEEEEEEETTTCCBC------CCCHHHHHHHHT
T ss_pred cccCCCEEEEEEEEEEeCCc-EEEEEE------EEEECCCceEEEEEEEEEEEEECCCCccc------cCCHHHHHHHHH
Confidence 58899999988753222211 111111 1122 355544444445677775 46664 889999987654
Q ss_pred C
Q psy6163 132 G 132 (137)
Q Consensus 132 ~ 132 (137)
.
T Consensus 143 ~ 143 (148)
T 2o5u_A 143 L 143 (148)
T ss_dssp T
T ss_pred h
Confidence 3
No 28
>3hm0_A Probable thioesterase; niaid, ssgcid, decode, UW, SBRI, infectious disease, rhizobiales, bacteremia, endocarditis, bacillary angiomatosis; 2.50A {Bartonella henselae}
Probab=28.42 E-value=1.3e+02 Score=21.24 Aligned_cols=62 Identities=8% Similarity=0.097 Sum_probs=30.8
Q ss_pred CCCCCCEEEEEEecccCCCccceeeEEEEeeecceecCCCcEEEeCCceEEEEcCCCCeeceEEecchhHHHHHhc
Q psy6163 54 AAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKENAQIC 129 (137)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~kAVIVRtKk~~~R~dG~~i~F~~NavVLln~k~~P~GTRI~GpV~~Elr~~~ 129 (137)
.+..||.|.|...-..-..+ .+....- +.+ ||..+---+-..|.+|.++.|. |+|.|+++.+
T Consensus 104 p~~~gd~i~V~t~v~~~~~~-s~~~~~~------i~~-~g~~~a~a~~~~V~vD~~~rp~------~iP~~~r~~l 165 (167)
T 3hm0_A 104 PAQIDNLLTIKTRISRLQGA-RFFMEQY------ILH-GESMLVTAKVEIALINEEGKPR------RLPKELFSTI 165 (167)
T ss_dssp CCCTTCEEEEEEEEEEECSS-EEEEEEE------EEE-TTEEEEEEEEEEEEEETTSCBC------CCCC------
T ss_pred CCCCCCEEEEEEEEEEeCCe-EEEEEEE------EEE-CCEEEEEEEEEEEEECCCCCEe------cCCHHHHHHh
Confidence 58899999998754332221 1211111 112 4654444445567788665443 7888888764
No 29
>2w3x_A CALE7; hydrolase, hotdog fold, thioesterase, enediyne biosynthesis; HET: JEF; 1.75A {Micromonospora echinospora}
Probab=28.28 E-value=1.3e+02 Score=19.80 Aligned_cols=68 Identities=7% Similarity=-0.061 Sum_probs=37.0
Q ss_pred CCCCCCEEEEEEecccCCCccceeeEEEEeeecceecCCCcEEEeCCceEEEEcCC-C--CeeceEEecchhHHHHHhcC
Q psy6163 54 AAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNK-G--EMKGSAITGPVAKENAQICG 130 (137)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~kAVIVRtKk~~~R~dG~~i~F~~NavVLln~k-~--~P~GTRI~GpV~~Elr~~~p 130 (137)
.+..||.|.+...-..... ..+....-+... ..||..+---+-..|++|.+ + .|. |+|.|+++.+.
T Consensus 70 ~~~~gd~v~v~t~v~~~~~-~s~~~~~~i~~~----~~~g~~~a~~~~~~v~vd~~~~~~r~~------~ip~~~~~~~~ 138 (147)
T 2w3x_A 70 ELAPFDRLAVRMRLVELTQ-TQMELGFDYLRL----GGDDLLVARGRQRIACMRGPNGRTEPV------RVPAGLVRAFA 138 (147)
T ss_dssp CCCTTCEEEEEEEEEEECS-SEEEEEEEEEEE----SSSEEEEEEEEEEEEEEESSTTSCEEC------CCCHHHHHHTG
T ss_pred CCCCCCEEEEEEEEEEecC-cEEEEEEEEEEc----CCCCEEEEEEEEEEEEEECCCCccccc------cCCHHHHHHHH
Confidence 5899999998875332221 122222111111 02454444344456677754 2 453 88999998875
Q ss_pred cC
Q psy6163 131 HG 132 (137)
Q Consensus 131 ~~ 132 (137)
..
T Consensus 139 ~~ 140 (147)
T 2w3x_A 139 PF 140 (147)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 30
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=27.97 E-value=43 Score=20.46 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=23.3
Q ss_pred ecceecCCCcEEEeCCceEEEEcC-CCCeec
Q psy6163 85 RKPFRRRDGVFIYFEDNAGVIVNN-KGEMKG 114 (137)
Q Consensus 85 Kk~~~R~dG~~i~F~~NavVLln~-k~~P~G 114 (137)
-..++++||.++-++.++..+.++ .+.|.+
T Consensus 73 e~r~~~~dG~~~w~~~~~~~~~d~~~g~~~~ 103 (117)
T 3f1p_A 73 QYRMLAKHGGYVWLETQGTVIYNPRNLQPQC 103 (117)
T ss_dssp CEEEECTTSSEEEEEEEEEEEEETTTTEEEE
T ss_pred EEEEEecCCCEEEEEEeeEEEECCCCCCceE
Confidence 344678999999999999888887 676643
No 31
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=27.05 E-value=46 Score=20.54 Aligned_cols=29 Identities=14% Similarity=0.310 Sum_probs=22.5
Q ss_pred ecceecCCCcEEEeCCceEEEEcC-CCCee
Q psy6163 85 RKPFRRRDGVFIYFEDNAGVIVNN-KGEMK 113 (137)
Q Consensus 85 Kk~~~R~dG~~i~F~~NavVLln~-k~~P~ 113 (137)
-..++++||.++-++.++..+.++ .+.|.
T Consensus 77 e~r~~~~dG~~~w~~~~~~~~~~~~~g~~~ 106 (121)
T 3f1p_B 77 MFRFRSKNQEWLWMRTSSFTFQNPYSDEIE 106 (121)
T ss_dssp EEEEECTTSCEEEEEEEEEEECCTTCCCCC
T ss_pred EEEEEecCCCEEEEEEEEEEEECCCCCcee
Confidence 344568999999999999888887 56664
No 32
>2hlj_A Hypothetical protein; putative thioesterase, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.00A {Pseudomonas putida} SCOP: d.38.1.1
Probab=26.60 E-value=1.2e+02 Score=20.26 Aligned_cols=63 Identities=6% Similarity=-0.052 Sum_probs=31.6
Q ss_pred CCCCCCEEEEEEecccCCCccceeeEEEEeeecceecC-CCcEEEeCCceEEEEcC-CCCeeceEEecchhHHHHHhc
Q psy6163 54 AAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRR-DGVFIYFEDNAGVIVNN-KGEMKGSAITGPVAKENAQIC 129 (137)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~kAVIVRtKk~~~R~-dG~~i~F~~NavVLln~-k~~P~GTRI~GpV~~Elr~~~ 129 (137)
.+..||.|.+...-.....+ .+.... .+.+. ||..+---.-..|++|. ++.|. |+|.|+++.+
T Consensus 69 ~~~~gd~v~v~~~v~~~~~~-s~~~~~------~i~~~~~g~~~a~~~~~~v~vd~~~~r~~------~ip~~~~~~l 133 (157)
T 2hlj_A 69 EVKLGTEVWVQTQILGFDRK-RLHVYH------SLHRAGFDEVLAASEQMLLHVDLAGPQSA------PFGHTTVCRL 133 (157)
T ss_dssp CCBTTCEEEEEEEEEEECSS-EEEEEE------EEEETTEEEEEEEEEEEEEEBCC---CBC------CCCHHHHHHH
T ss_pred ccCCCCEEEEEEEEEEeCCc-EEEEEE------EEEECCCCcEEEEEEEEEEEEECCCCccC------CCCHHHHHHH
Confidence 57899999988753322221 111111 11122 34433333344566663 35553 7888888765
No 33
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=25.83 E-value=1e+02 Score=18.16 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=23.8
Q ss_pred ecceecCCCcEEEeCCceEEEEcCCCCeec
Q psy6163 85 RKPFRRRDGVFIYFEDNAGVIVNNKGEMKG 114 (137)
Q Consensus 85 Kk~~~R~dG~~i~F~~NavVLln~k~~P~G 114 (137)
...+.++||...-+...+..+.+++|.+.+
T Consensus 80 e~r~~~~~g~~~w~~~~~~~~~~~~g~~~~ 109 (118)
T 3icy_A 80 VYRIVTPEGKLHWIEDHMRSSFSDDGLFSG 109 (118)
T ss_dssp EEEEECTTCCEEEEEEEEEEEECTTSCEEE
T ss_pred EEEEECCCCCEEEEEEEEEEEECCCCCEEE
Confidence 445568899988888888888888888764
No 34
>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain, OB-fold, tRNA synthetase complex, RNA binding protein; 1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A
Probab=23.92 E-value=1.6e+02 Score=22.06 Aligned_cols=86 Identities=23% Similarity=0.328 Sum_probs=50.1
Q ss_pred cccCCEEEEecCCCCceEEEEEEeccCC--------ccccCCCCCCCCEEEEEEecccCC-CccceeeEEEEeeecceec
Q psy6163 20 LPVGAVINCADNTGAKNLFVIAVQGVKG--------RLNRLPAAGSGDMFVATVKKGKPE-LRKKVMPAVVIRQRKPFRR 90 (137)
Q Consensus 20 Iq~~T~L~VaDNSGak~v~cI~v~~~~~--------r~~r~~~a~iGD~I~vsVKk~~~~-~Kg~v~kAVIVRtKk~~~R 90 (137)
|..+..+.+.+.-+|..+++.+|--+.. =.+-++.+.+|....+.+-.+.|. .+|..-.+.|.-.-.
T Consensus 8 irVG~I~~~e~hP~AdkL~v~~VD~G~~~~rqIV~G~~n~v~~a~lggk~v~~~~nlkp~klrGv~SeGMvLcs~~---- 83 (171)
T 1fl0_A 8 LRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCASS---- 83 (171)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEECSSSSCEEEEECCTTTSCGGGGTTEEEEEECCSCCEESSSCEECCEECEEEE----
T ss_pred EEEEEEEEEEECCCCCccEEEEEEcCCCcEEEEEECCCceEcchhcCCEEEcCceEEeeEEEccEeccCEEEEEec----
Confidence 4566777777777777777666643211 122345567777776655555553 366666666444321
Q ss_pred CCCcEEEeCCceEEEEc-CCCCeeceEEe
Q psy6163 91 RDGVFIYFEDNAGVIVN-NKGEMKGSAIT 118 (137)
Q Consensus 91 ~dG~~i~F~~NavVLln-~k~~P~GTRI~ 118 (137)
++. +.|+. ++..|.|+++.
T Consensus 84 --------~~~-~~il~~~~~~~~G~~v~ 103 (171)
T 1fl0_A 84 --------PEK-IEILAPPNGSVPGDRIT 103 (171)
T ss_dssp --------TTE-EEECBCCTTCCTTCBCC
T ss_pred --------CCC-EEEEECCCCCCCCCEEE
Confidence 233 44443 45778999986
No 35
>3ers_X TRNA-binding protein YGJH; oligonucleotide-oligosaccharide binding fold; 1.87A {Escherichia coli}
Probab=23.89 E-value=95 Score=21.84 Aligned_cols=24 Identities=21% Similarity=0.591 Sum_probs=20.6
Q ss_pred cccCCEEEEecCCCCceEEEEEEe
Q psy6163 20 LPVGAVINCADNTGAKNLFVIAVQ 43 (137)
Q Consensus 20 Iq~~T~L~VaDNSGak~v~cI~v~ 43 (137)
|..++.+.+-+.-+|..+++.+|-
T Consensus 14 irVG~I~~~e~hp~AdKL~~~~VD 37 (118)
T 3ers_X 14 MRVGKIVEVKRHENADKLYIVQVD 37 (118)
T ss_dssp EEEEEEEEEECCTTCSSCEEEEEE
T ss_pred EEEEEEEEEEEcCCCCCcEEEEEE
Confidence 678899999999999988888875
No 36
>2fuj_A Conserved hypothetical protein; structural genomics, conserved hypot protein, hot DOG domain, acyl-COA thioesterase, hydrolase; 1.70A {Xanthomonas campestris PV} SCOP: d.38.1.1
Probab=23.84 E-value=1.5e+02 Score=19.15 Aligned_cols=63 Identities=10% Similarity=0.022 Sum_probs=26.5
Q ss_pred CCCCCCEEEEEEecccCCCccceeeEEEEeeecceec-CC-CcEEEeCCceEEEEcC-CCCeeceEEecchhHHHHHhc
Q psy6163 54 AAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRR-RD-GVFIYFEDNAGVIVNN-KGEMKGSAITGPVAKENAQIC 129 (137)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~kAVIVRtKk~~~R-~d-G~~i~F~~NavVLln~-k~~P~GTRI~GpV~~Elr~~~ 129 (137)
.+..||.|.+...-.....+ .+.... .+.+ .| |..+---.-..|.+|. ++.|. |+|.|+++.+
T Consensus 71 ~~~~gd~v~v~~~v~~~~~~-s~~~~~------~i~~~~~~g~~~a~~~~~~v~vd~~~~r~~------~ip~~~~~~l 136 (137)
T 2fuj_A 71 PLVWPNDILVELFVERLGSS-SVTIGH------RILDQKDEGVLYSDGNVVVVWIDTQTGKSA------SLPDAVRAAS 136 (137)
T ss_dssp CCCTTCCEEEEEEEEEECSS-EEEEEE------EEEESSCTTCEEEEEEEEEEEESSSCCCC-----------------
T ss_pred CccCCCEEEEEEEEEEecCc-EEEEEE------EEEeCCCCCeEEEEEEEEEEEEECCCCCcC------CCCHHHHHhh
Confidence 58899999988753322221 111111 1222 24 6544444445567775 46664 7888888753
No 37
>2oiw_A Putative 4-hydroxybenzoyl-COA thioesterase; structural genomics, protein structure initiative, midwest center for structu genomics; 2.00A {Geobacillus stearothermophilus} SCOP: d.38.1.1
Probab=23.47 E-value=1.6e+02 Score=19.09 Aligned_cols=65 Identities=12% Similarity=-0.000 Sum_probs=36.0
Q ss_pred CCCCCCEEEEEEecccCCCccceeeEEEEeeecceecCCCcEEEeCCceEEEEcC-CCCeeceEEecchhHHHHHhcCcC
Q psy6163 54 AAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNN-KGEMKGSAITGPVAKENAQICGHG 132 (137)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~kAVIVRtKk~~~R~dG~~i~F~~NavVLln~-k~~P~GTRI~GpV~~Elr~~~p~~ 132 (137)
.+..||.|.+...-.....+ .+....-+. + +|..+---.-..|.+|. ++.|. |+|.|+++.+...
T Consensus 65 ~~~~gd~v~v~~~v~~~~~~-s~~~~~~i~------~-~g~~~a~~~~~~v~vd~~~~r~~------~ip~~~~~~l~~~ 130 (136)
T 2oiw_A 65 QMYYGQDVTVYTGIERIGNT-SLTIYEEIH------Q-NGVVCAKGRSVYVNFNFDTGRPE------PIPDDIRVKLREH 130 (136)
T ss_dssp CCCTTSCEEEEEEEEEECSS-EEEEEEEEE------E-TTEEEEEEEEEEEEEETTTTEEC------CCCHHHHHHHHTT
T ss_pred cCCCCCEEEEEEEEEecCCc-EEEEEEEEE------E-CCEEEEEEEEEEEEEECCCCccc------cCCHHHHHHHHhh
Confidence 58899999888754332221 122111111 1 35443333445566775 35554 8899999876543
No 38
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=22.76 E-value=1.1e+02 Score=19.66 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=26.0
Q ss_pred ecceecCCCcEEEeCCceEEEEcCCCCeeceEEecc
Q psy6163 85 RKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 120 (137)
Q Consensus 85 Kk~~~R~dG~~i~F~~NavVLln~k~~P~GTRI~Gp 120 (137)
-+.+.++||.+.-+...+.++.+++|.|.+ +.|.
T Consensus 85 e~r~~~~~G~~~w~~~~~~~~~d~~g~~~~--~~G~ 118 (142)
T 3mr0_A 85 EYRVRTRSGDFRWIQSRGQALWNSAGEPYR--MVGW 118 (142)
T ss_dssp EEEEECTTSCEEEEEEEEEEEECTTSCEEE--EEEE
T ss_pred EEEEECCCCCEEEEEEEEEEEECCCCCEEE--EEEE
Confidence 345678899988888888888999998863 4443
No 39
>2hx5_A Hypothetical protein; thioesterase/thiol ester dehydrase-isomerase fold, structura genomics, joint center for structural genomics, JCSG; 1.50A {Prochlorococcus marinus} SCOP: d.38.1.1
Probab=21.95 E-value=1.8e+02 Score=19.37 Aligned_cols=63 Identities=6% Similarity=0.013 Sum_probs=34.5
Q ss_pred CCCCCCEEEEEEecccCCCccceeeEEEEeeecceecCCCcEEEeCCceEEEEcC-CCCeeceEEecchhHHHHHhcC
Q psy6163 54 AAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNN-KGEMKGSAITGPVAKENAQICG 130 (137)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~kAVIVRtKk~~~R~dG~~i~F~~NavVLln~-k~~P~GTRI~GpV~~Elr~~~p 130 (137)
.+..||.|.+...-..... ..+....-+ .+ +|..+---.-..|++|. ++.|. |+|.|+++.+.
T Consensus 79 p~~~gd~i~v~t~v~~~~~-~s~~~~~~i------~~-~g~~~a~~~~~~v~vd~~~~r~~------~iP~~~~~~l~ 142 (152)
T 2hx5_A 79 PIHTGDALAMELRPERLNP-NSFQVHFEF------RC-EEQIAAHALIRHLAINAQTRHRC------ALPEGIDRWLE 142 (152)
T ss_dssp CCCTTCEEEEEEEEEEEET-TEEEEEEEE------EE-TTEEEEEEEEEEECEETTTCCBC------CCCHHHHHHHH
T ss_pred CCCCCCEEEEEEEEEEeCC-cEEEEEEEE------EE-CCEEEEEEEEEEEEEeCCCCeEe------cCCHHHHHHHH
Confidence 5889999998875322221 112211111 12 45443333444566775 35553 78999988664
No 40
>2nuj_A Thioesterase superfamily; YP_509914.1, structural genomics, protein structure initiative, joint center for structural G JCSG, hydrolase; 2.00A {Jannaschia} SCOP: d.38.1.1
Probab=21.47 E-value=2e+02 Score=19.60 Aligned_cols=65 Identities=12% Similarity=0.105 Sum_probs=35.9
Q ss_pred CCCCCCEEEEEEecccCCCccceeeEEEEeeecceecCCCcEEEeCCc--eEEEEcC-CCCeeceEEecchhHHHHHhcC
Q psy6163 54 AAGSGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDN--AGVIVNN-KGEMKGSAITGPVAKENAQICG 130 (137)
Q Consensus 54 ~a~iGD~I~vsVKk~~~~~Kg~v~kAVIVRtKk~~~R~dG~~i~F~~N--avVLln~-k~~P~GTRI~GpV~~Elr~~~p 130 (137)
.+..||.|.+...-..... ..+....-+ .+.||..+---.- ..|.+|. ++.|. |+|.|+++.+.
T Consensus 88 ~~~~gd~i~v~t~v~~~~~-~s~~~~~~i------~~~~g~~~a~~~~~~~~v~vd~~~~r~~------~ip~~~~~~l~ 154 (163)
T 2nuj_A 88 EMGMGEDYVITGRVSNFRT-TSFTMEFAC------WRLGDAVECTSEGSAVVVLLNRDGSGRY------PIPEAGRASFV 154 (163)
T ss_dssp CCCTTCEEEEEEEEEEECS-SEEEEEEEE------EECSSSCEEEEEEEEEEEEECTTSSSBC------CCCHHHHHHHH
T ss_pred CccCCCEEEEEEEEEEeCC-cEEEEEEEE------EeCCCEEEEEEEEeeEEEEEECCCCCCc------cCCHHHHHHHH
Confidence 5889999999875332221 122211111 1225653333333 4567775 35554 88999998765
Q ss_pred c
Q psy6163 131 H 131 (137)
Q Consensus 131 ~ 131 (137)
.
T Consensus 155 ~ 155 (163)
T 2nuj_A 155 T 155 (163)
T ss_dssp H
T ss_pred h
Confidence 4
No 41
>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=21.22 E-value=14 Score=29.76 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=28.4
Q ss_pred cCCCCCCCCEEEEEEecccCCCccceeeEEEEeeec
Q psy6163 51 RLPAAGSGDMFVATVKKGKPELRKKVMPAVVIRQRK 86 (137)
Q Consensus 51 r~~~a~iGD~I~vsVKk~~~~~Kg~v~kAVIVRtKk 86 (137)
-.|.-.+||+|.|.++-...+.|-|.|.+||+.-+.
T Consensus 139 diPeFr~GDtV~V~vkI~E~KeRiQ~FeGVVIarr~ 174 (233)
T 3bbo_R 139 PVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQN 174 (233)
T ss_dssp CCSSSCCCSCCCCCCCBCCCSSCCSCCBCCCCCSCB
T ss_pred CCCccCCCCEEEEEEEeccCcceecceEEEEEEEeC
Confidence 346788999999999876644477999999997654
No 42
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=20.71 E-value=92 Score=19.13 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=20.7
Q ss_pred eecCCCcEEEeCCceEEEEcCCCCeec
Q psy6163 88 FRRRDGVFIYFEDNAGVIVNNKGEMKG 114 (137)
Q Consensus 88 ~~R~dG~~i~F~~NavVLln~k~~P~G 114 (137)
.+|+||..+-.+-+..-+.+++|++.+
T Consensus 73 ~~~kdG~~~~~~~~~~pi~d~~G~~~~ 99 (109)
T 1n9l_A 73 NYRKDGTPFWNLLTVTPIKTPDGRVSK 99 (109)
T ss_dssp EECTTSCEEEEEEEEEEEECTTSCEEE
T ss_pred EEcCCCCEEEEEEEEEEEECCCCCEEE
Confidence 358899987777777778888888754
No 43
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_C
Probab=20.17 E-value=69 Score=22.98 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=18.1
Q ss_pred EEEeCCceEEEEcCCCCeece--EEecchh
Q psy6163 95 FIYFEDNAGVIVNNKGEMKGS--AITGPVA 122 (137)
Q Consensus 95 ~i~F~~NavVLln~k~~P~GT--RI~GpV~ 122 (137)
..+| ||.| .+++.+.+|+ .|||||.
T Consensus 50 VP~f--NapV-y~enK~~IGKVdEIFGPin 76 (114)
T 3u28_C 50 IPYF--NAPI-YLENKTQVGKVDEILGPLN 76 (114)
T ss_dssp EECT--TCEE-ECTTCCEEEEEEEEESBTT
T ss_pred CCCC--CCEe-EccCCccceeEeEEeCCCC
Confidence 5566 6666 4556779997 7999985
No 44
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=20.03 E-value=56 Score=25.39 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=12.4
Q ss_pred CCCCCCEEEEEEec
Q psy6163 54 AAGSGDMFVATVKK 67 (137)
Q Consensus 54 ~a~iGD~I~vsVKk 67 (137)
.+.+||+|+++||-
T Consensus 29 ~a~VGdII~ATIki 42 (187)
T 3kcp_B 29 KGEVGDILIGTVRI 42 (187)
T ss_dssp CCCTTCEEEEEEEE
T ss_pred ceeeccEEEEEEEE
Confidence 58999999999973
Done!