RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6163
         (137 letters)



>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 132

 Score =  136 bits (343), Expect = 6e-43
 Identities = 56/114 (49%), Positives = 76/114 (66%)

Query: 11  GAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDMFVATVKKGKP 70
                ++  L  G++I CADNTGA+ L VI+V G  G  NRLP AG GD    +V KG P
Sbjct: 3   ALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTP 62

Query: 71  ELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 124
           E+R++V+ AVV+RQRKP RR DG  + FEDNA VIV+   + +G+ + GP+A+E
Sbjct: 63  EMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIARE 116


>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus
           thermophilus [TaxId: 274]}
          Length = 122

 Score =  107 bits (269), Expect = 7e-32
 Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 7/106 (6%)

Query: 22  VGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDMFVATVKKGKPE---LRKKVMP 78
               +  ADNTGA+ +  I V            A  GD+ VA+VK+  P        V+ 
Sbjct: 4   PQTYLEVADNTGARKIMCIRVLKGSNA----KYATVGDVIVASVKEAIPRGAVKEGDVVK 59

Query: 79  AVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 124
           AVV+R +K  +R DG  I F+DNA VI+NN+ E +G+ + GPVA+E
Sbjct: 60  AVVVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARE 105


>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli
           [TaxId: 562]}
          Length = 121

 Score = 99.5 bits (248), Expect = 9e-29
 Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 8/107 (7%)

Query: 22  VGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDMFVATVKKGKPE---LRKKVMP 78
              ++N ADN+GA+ +  I V G     +    AG GD+   T+K+  P     +  V+ 
Sbjct: 3   EQTMLNVADNSGARRVMCIKVLGG----SHRRYAGVGDIIKITIKEAIPRGKVKKGDVLK 58

Query: 79  AVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEM-KGSAITGPVAKE 124
           AVV+R +K  RR DG  I F+ NA V++NN  E   G+ I GPV +E
Sbjct: 59  AVVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRE 105


>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 122

 Score = 97.9 bits (244), Expect = 4e-28
 Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 7/106 (6%)

Query: 22  VGAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDMFVATVKKGKP---ELRKKVMP 78
             + +  ADN+GA+ + VI V G  GR      A  GD+ VATVK   P     + +V+ 
Sbjct: 4   QESRLKVADNSGAREVLVIKVLGGSGRRY----ANIGDVVVATVKDATPGGVVKKGQVVK 59

Query: 79  AVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 124
           AVV+R ++  RR DG +I F++NA VI+ +    +G+ I GPVA+E
Sbjct: 60  AVVVRTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARE 105


>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas
           maltophilia [TaxId: 40324]}
          Length = 266

 Score = 26.1 bits (56), Expect = 1.7
 Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 70  PELRKKVMPAVVIRQRKPFRRRDGVFIYFED--NAGVIVNNKG 110
           P+LR   + A  ++   P +  D  +    +   A ++    G
Sbjct: 5   PQLRAYTVDASWLQPMAPLQIADHTWQIGTEDLTALLVQTPDG 47


>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic
           domain {Escherichia coli [TaxId: 562]}
          Length = 210

 Score = 25.1 bits (53), Expect = 3.3
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 74  KKVMPAVV-IRQRKPFRRRDGVFIYFEDNAGVIVNNKGEM 112
           ++  PAVV +  R                +GVI++ +G +
Sbjct: 10  RRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYI 49


>d1h6da2 d.81.1.5 (A:213-374) Glucose-fructose oxidoreductase
           {Zymomonas mobilis [TaxId: 542]}
          Length = 162

 Score = 24.2 bits (51), Expect = 6.2
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 23  GAVINCADNTGAKNLFVIAVQGVKGRLNRLPAAGSGDMFVATVKKGKPE---LRKKVMPA 79
           GA+ + A +         +VQG K  L   PA G     ++    G      + + +MPA
Sbjct: 102 GALSHGASSYSTTTTSRFSVQGDKAVLLMDPATGYYQNLISVQTPGHANQSMMPQFIMPA 161


>d2foka4 c.52.1.12 (A:387-579) Restriction endonuclease FokI,
           C-terminal (catalytic) domain {Flavobacterium
           okeanokoites [TaxId: 244]}
          Length = 193

 Score = 24.1 bits (52), Expect = 6.3
 Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 4/35 (11%)

Query: 87  PFRRRDGVFIY---FEDNAGVIVNNKGEMKGSAIT 118
             R+ DG  IY      + GVIV+ K    G  + 
Sbjct: 59  GSRKPDGA-IYTVGSPIDYGVIVDTKAYSGGYNLP 92


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.139    0.407 

Gapped
Lambda     K      H
   0.267   0.0379    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 499,996
Number of extensions: 21950
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 15
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.2 bits)