BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6164
(64 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PC14|RL23_DANRE 60S ribosomal protein L23 OS=Danio rerio GN=rpl23 PE=2 SV=1
Length = 140
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/46 (84%), Positives = 45/46 (97%)
Query: 1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46
>sp|Q5REU2|RL23_PONAB 60S ribosomal protein L23 OS=Pongo abelii GN=RPL23 PE=2 SV=1
Length = 140
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/46 (84%), Positives = 45/46 (97%)
Query: 1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46
>sp|P62832|RL23_RAT 60S ribosomal protein L23 OS=Rattus norvegicus GN=Rpl23 PE=2 SV=1
Length = 140
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/46 (84%), Positives = 45/46 (97%)
Query: 1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46
>sp|P62831|RL23_PIG 60S ribosomal protein L23 OS=Sus scrofa GN=RPL23 PE=2 SV=1
Length = 140
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/46 (84%), Positives = 45/46 (97%)
Query: 1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46
>sp|P62830|RL23_MOUSE 60S ribosomal protein L23 OS=Mus musculus GN=Rpl23 PE=1 SV=1
Length = 140
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/46 (84%), Positives = 45/46 (97%)
Query: 1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46
>sp|Q90YU5|RL23_ICTPU 60S ribosomal protein L23 OS=Ictalurus punctatus GN=rpl23 PE=2
SV=2
Length = 140
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/46 (84%), Positives = 45/46 (97%)
Query: 1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46
>sp|P62829|RL23_HUMAN 60S ribosomal protein L23 OS=Homo sapiens GN=RPL23 PE=1 SV=1
Length = 140
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/46 (84%), Positives = 45/46 (97%)
Query: 1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46
>sp|Q9XSU3|RL23_CANFA 60S ribosomal protein L23 OS=Canis familiaris GN=RPL23 PE=2 SV=1
Length = 140
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/46 (84%), Positives = 45/46 (97%)
Query: 1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46
>sp|Q3T057|RL23_BOVIN 60S ribosomal protein L23 OS=Bos taurus GN=RPL23 PE=2 SV=2
Length = 140
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/46 (84%), Positives = 45/46 (97%)
Query: 1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46
>sp|Q93140|RL23_BRUMA 60S ribosomal protein L23 OS=Brugia malayi GN=RPL23 PE=2 SV=1
Length = 140
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/46 (86%), Positives = 44/46 (95%)
Query: 1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
MSKRGRGG++GAKFRISL LPVGAV+NCADNTGAKNLFVIAV G+K
Sbjct: 1 MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVIAVSGIK 46
>sp|Q9GNE2|RL23_AEDAE 60S ribosomal protein L23 OS=Aedes aegypti GN=RpL23-A PE=2 SV=1
Length = 140
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/46 (86%), Positives = 43/46 (93%)
Query: 1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
MSKRGRGGSAG KFRISL LPVGAVINCADNTGAKNL+VIAV G++
Sbjct: 1 MSKRGRGGSAGGKFRISLGLPVGAVINCADNTGAKNLYVIAVHGIR 46
>sp|P52816|RL23_ONCVO 60S ribosomal protein L23 (Fragment) OS=Onchocerca volvulus
GN=RPL23 PE=3 SV=1
Length = 48
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/46 (86%), Positives = 44/46 (95%)
Query: 1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
MSKRGRGG++GAKFRISL LPVGAV+NCADNTGAKNLFVIAV G+K
Sbjct: 1 MSKRGRGGTSGAKFRISLGLPVGAVMNCADNTGAKNLFVIAVYGIK 46
>sp|P48159|RL23_DROME 60S ribosomal protein L23 OS=Drosophila melanogaster GN=RpL23
PE=2 SV=2
Length = 140
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/46 (82%), Positives = 43/46 (93%)
Query: 1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
MSKRGRGG+AG KFRISL LPVGAV+NCADNTGAKNL+VIAV G++
Sbjct: 1 MSKRGRGGTAGGKFRISLGLPVGAVMNCADNTGAKNLYVIAVHGIR 46
>sp|P48158|RL23_CAEEL 60S ribosomal protein L23 OS=Caenorhabditis elegans GN=rpl-23
PE=3 SV=1
Length = 140
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/46 (82%), Positives = 44/46 (95%)
Query: 1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
MSKRGRGG++GAKFRISL LPVGAV+NCADNTGAKNLFVI+V G++
Sbjct: 1 MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIR 46
>sp|Q07760|RL23_TOBAC 60S ribosomal protein L23 OS=Nicotiana tabacum GN=RPL23 PE=2 SV=1
Length = 140
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 36/46 (78%), Positives = 42/46 (91%)
Query: 1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
MSKRGRGGSAG KFR+SL LPV A INCADNTGAKNL++I+V+G+K
Sbjct: 1 MSKRGRGGSAGNKFRMSLGLPVAATINCADNTGAKNLYIISVKGIK 46
>sp|P49690|RL23_ARATH 60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2
SV=3
Length = 140
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 42/46 (91%)
Query: 1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
MSKRGRGG++G KFR+SL LPV A +NCADNTGAKNL++I+V+G+K
Sbjct: 1 MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIK 46
>sp|Q9XEK8|RL23_TORRU 60S ribosomal protein L23 OS=Tortula ruralis GN=RPL23 PE=2 SV=1
Length = 139
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/41 (82%), Positives = 39/41 (95%)
Query: 1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIA 41
MSKRGRGGS+G KFR+SL LPVGAV+NCADNTGAKNL+VI+
Sbjct: 1 MSKRGRGGSSGNKFRMSLGLPVGAVVNCADNTGAKNLYVIS 41
>sp|P0DJ53|RL23_TETTS 60S ribosomal protein L23 OS=Tetrahymena thermophila (strain
SB210) GN=RPL23 PE=1 SV=1
Length = 141
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%)
Query: 4 RGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
RGRGG G K ++SL LPVGAV+NCADN+GAKNL+ IA G+K
Sbjct: 5 RGRGGQVGTKAKVSLGLPVGAVMNCADNSGAKNLYTIACFGIK 47
>sp|Q94776|RL23_TRYCR 60S ribosomal protein L23 OS=Trypanosoma cruzi GN=RPL23 PE=2 SV=1
Length = 141
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 33/34 (97%)
Query: 11 GAKFRISLALPVGAVINCADNTGAKNLFVIAVQG 44
G +FR+SLALPVGAV+NCADNTGAKNL++I+V+G
Sbjct: 10 GCRFRVSLALPVGAVVNCADNTGAKNLYIISVKG 43
>sp|P0CX42|RL23B_YEAST 60S ribosomal protein L23-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL23B PE=1 SV=1
Length = 137
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 34/37 (91%)
Query: 8 GSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQG 44
G+ G KFRISL LPVGA++NCADN+GA+NL++IAV+G
Sbjct: 5 GAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKG 41
>sp|P0CX41|RL23A_YEAST 60S ribosomal protein L23-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL23A PE=1 SV=1
Length = 137
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 34/37 (91%)
Query: 8 GSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQG 44
G+ G KFRISL LPVGA++NCADN+GA+NL++IAV+G
Sbjct: 5 GAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKG 41
>sp|O42867|RL23_SCHPO 60S ribosomal protein L23 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl23a PE=3 SV=1
Length = 139
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 36/41 (87%)
Query: 4 RGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQG 44
RGRG ++G K+R++L LPV A++NCADN+GAKNL++++V G
Sbjct: 3 RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFG 43
>sp|Q54G86|RL23_DICDI 60S ribosomal protein L23 OS=Dictyostelium discoideum GN=rpl23
PE=3 SV=1
Length = 136
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 34/38 (89%)
Query: 9 SAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
+ G+ +R+SL LPVGAV+N ADN+GAKNL+VIAV+G+K
Sbjct: 6 AVGSNYRVSLGLPVGAVMNSADNSGAKNLYVIAVKGIK 43
>sp|A0RVY3|RL14_CENSY 50S ribosomal protein L14P OS=Cenarchaeum symbiosum (strain A)
GN=rpl14p PE=3 SV=1
Length = 144
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 4 RGRGGSAGAK-FR--ISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
R RG + G + FR ++ ALPVGA + CADN+GAK L +I VQ K
Sbjct: 5 RSRGKAKGVEEFRPYVTRALPVGARVTCADNSGAKVLEIIMVQKAK 50
>sp|B1L776|RL14_KORCO 50S ribosomal protein L14P OS=Korarchaeum cryptofilum (strain
OPF8) GN=rpl14p PE=3 SV=1
Length = 141
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 11 GAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
G K +I+ LPV A + CADNTGAK L +I V G K
Sbjct: 12 GVKPKITHGLPVRARLKCADNTGAKLLMIIGVHGYK 47
>sp|Q8TW20|RL14_METKA 50S ribosomal protein L14P OS=Methanopyrus kandleri (strain AV19
/ DSM 6324 / JCM 9639 / NBRC 100938) GN=rpl14p PE=3
SV=1
Length = 133
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 19 ALPVGAVINCADNTGAKNLFVIAVQGVK 46
ALPVGA + CADNTGA+ L +IAV+G K
Sbjct: 12 ALPVGARLVCADNTGARELQIIAVKGYK 39
>sp|O28364|RL14_ARCFU 50S ribosomal protein L14P OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rpl14p PE=3 SV=1
Length = 132
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 16 ISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
I ALP GA + CADNTGA+ L +IAV+G K
Sbjct: 8 IPRALPTGARLVCADNTGARELEIIAVKGYK 38
>sp|A5UL78|RL14_METS3 50S ribosomal protein L14P OS=Methanobrevibacter smithii (strain
PS / ATCC 35061 / DSM 861) GN=rpl14p PE=3 SV=1
Length = 132
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 16 ISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
+S ALP+GA + C DNTGA+ + +I+V+G K
Sbjct: 8 VSKALPIGATLQCVDNTGAREIQIISVKGFK 38
>sp|A3DNB7|RL14_STAMF 50S ribosomal protein L14P OS=Staphylothermus marinus (strain
ATCC 43588 / DSM 3639 / F1) GN=rpl14p PE=3 SV=1
Length = 140
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
M K+G+G A ++ RI+ L VG+ + ADN+GAK + +I V G K
Sbjct: 1 MPKKGKGKPAFSRRRIATGLQVGSYVRVADNSGAKLVKIIGVPGYK 46
>sp|O26121|RL14_METTH 50S ribosomal protein L14P OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpl14p PE=3 SV=1
Length = 132
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 15 RISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
+++ ALPVGA + C DNTGA+ + +I+V+G K
Sbjct: 7 KVTRALPVGARLQCVDNTGAREVEIISVRGYK 38
>sp|Q5JJF8|RL14_PYRKO 50S ribosomal protein L14P OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=rpl14p PE=3 SV=1
Length = 141
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 1 MSKRGRGGSAG-AKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
M+K+G G + G + R + ALP+GA + ADN+GAK + +I V G K
Sbjct: 1 MAKKGAGATRGISPVRPTRALPIGAYLKVADNSGAKVIQIIGVVGYK 47
>sp|Q74N81|RL14_NANEQ 50S ribosomal protein L14P OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rpl14p PE=3 SV=1
Length = 133
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 16 ISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
I ALPVGA +N ADN+GAK + +IAV+G K
Sbjct: 8 IVRALPVGAYLNVADNSGAKVVKLIAVKGYK 38
>sp|A6UWU8|RL14_META3 50S ribosomal protein L14P OS=Methanococcus aeolicus (strain
Nankai-3 / ATCC BAA-1280) GN=rpl14p PE=3 SV=1
Length = 132
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 19 ALPVGAVINCADNTGAKNLFVIAVQGVK 46
+LP GA + CADNTGAK L +IAV+G K
Sbjct: 11 SLPNGARLICADNTGAKELEIIAVKGYK 38
>sp|Q8U009|RL14_PYRFU 50S ribosomal protein L14P OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpl14p PE=1 SV=1
Length = 141
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 1 MSKRGRGGSAG-AKFRISLALPVGAVINCADNTGAKNLFVIAV 42
M+K+G G + G + R + ALPVGA + ADN+GAK + +I V
Sbjct: 1 MAKKGAGATRGVSAVRPTRALPVGAYLTVADNSGAKVIQIIGV 43
>sp|Q2NFW7|RL14_METST 50S ribosomal protein L14P OS=Methanosphaera stadtmanae (strain
DSM 3091) GN=rpl14p PE=3 SV=1
Length = 132
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 16 ISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
+S +LP+GA + C DNTGA+ + +I+V+G K
Sbjct: 8 VSKSLPIGARLKCIDNTGAREVEIISVKGFK 38
>sp|Q9V1U6|RL14_PYRAB 50S ribosomal protein L14P OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rpl14p PE=3 SV=1
Length = 141
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 1 MSKRGRGGSAG-AKFRISLALPVGAVINCADNTGAKNLFVIAV 42
M+K+G G + G R + A+PVGA + ADN+GAK + VI V
Sbjct: 1 MAKKGAGATRGITPVRPTRAIPVGAYLTVADNSGAKVIQVIGV 43
>sp|O59427|RL14_PYRHO 50S ribosomal protein L14P OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl14p PE=3 SV=2
Length = 141
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 1 MSKRGRGGSAG-AKFRISLALPVGAVINCADNTGAKNLFVIAV 42
M+K+G G + G + R + A+P+GA + ADN+GAK + VI V
Sbjct: 1 MAKKGAGATRGISPVRPTRAIPIGAYLTVADNSGAKVIQVIGV 43
>sp|P54037|RL14_METJA 50S ribosomal protein L14P OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=rpl14p PE=3 SV=1
Length = 132
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 19 ALPVGAVINCADNTGAKNLFVIAVQGVK 46
ALPVGA CADNTGAK + +IAV+ K
Sbjct: 11 ALPVGARCICADNTGAKEVEIIAVRNYK 38
>sp|A0B9W0|RL14_METTP 50S ribosomal protein L14P OS=Methanosaeta thermophila (strain
DSM 6194 / PT) GN=rpl14p PE=3 SV=1
Length = 132
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 11 GAKFRISLALPVGAVINCADNTGAKNLFVIAVQ---GVKD 47
G K +I ++ G + CADNTGA+ LFV++V+ GVK+
Sbjct: 3 GNKAKIPRSINTGTYLECADNTGARTLFVVSVKKYRGVKN 42
>sp|A9A9Q4|RL14_METM6 50S ribosomal protein L14P OS=Methanococcus maripaludis (strain
C6 / ATCC BAA-1332) GN=rpl14p PE=3 SV=1
Length = 132
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 16 ISLALPVGAVINCADNTGAKNLFVIAVQ 43
I +LP GA + CADNTGAK L VIAV+
Sbjct: 8 IVRSLPNGARLVCADNTGAKELEVIAVK 35
>sp|A4FWB1|RL14_METM5 50S ribosomal protein L14P OS=Methanococcus maripaludis (strain
C5 / ATCC BAA-1333) GN=rpl14p PE=3 SV=1
Length = 132
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 16 ISLALPVGAVINCADNTGAKNLFVIAVQ 43
I +LP GA + CADNTGAK L VIAV+
Sbjct: 8 IVRSLPNGARLVCADNTGAKELEVIAVK 35
>sp|Q6LXE3|RL14_METMP 50S ribosomal protein L14P OS=Methanococcus maripaludis (strain
S2 / LL) GN=rpl14p PE=3 SV=1
Length = 132
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 16 ISLALPVGAVINCADNTGAKNLFVIAVQ 43
I +LP GA + CADNTGAK L VIAV+
Sbjct: 8 IVRSLPNGARLVCADNTGAKELEVIAVK 35
>sp|A6UQ54|RL14_METVS 50S ribosomal protein L14P OS=Methanococcus vannielii (strain SB
/ ATCC 35089 / DSM 1224) GN=rpl14p PE=3 SV=1
Length = 132
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 16 ISLALPVGAVINCADNTGAKNLFVIAVQ 43
I +LP GA + CADNTGAK L VIAV+
Sbjct: 8 IVRSLPNGARLVCADNTGAKELEVIAVK 35
>sp|P14031|RL14_METVA 50S ribosomal protein L14P OS=Methanococcus vannielii GN=rpl14p
PE=3 SV=1
Length = 132
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 16 ISLALPVGAVINCADNTGAKNLFVIAVQ 43
I +LP GA + CADNTGAK L VIAV+
Sbjct: 8 IVRSLPNGARLVCADNTGAKELEVIAVK 35
>sp|Q9YF82|RL14_AERPE 50S ribosomal protein L14P OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rpl14p PE=3 SV=1
Length = 140
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 30/46 (65%)
Query: 1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
M+K+ + G +++ ++ L VG+ + ADN+GAK + +I+V VK
Sbjct: 1 MAKKKKYGVVVSRYGVNTGLQVGSYVPVADNSGAKEVMIISVPQVK 46
>sp|A6VGZ5|RL14_METM7 50S ribosomal protein L14P OS=Methanococcus maripaludis (strain
C7 / ATCC BAA-1331) GN=rpl14p PE=3 SV=1
Length = 132
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 16 ISLALPVGAVINCADNTGAKNLFVIAVQ 43
I +LP GA + CADNTGAK L +IAV+
Sbjct: 8 IVRSLPNGARLVCADNTGAKELEIIAVK 35
>sp|P22450|RL14_HALMA 50S ribosomal protein L14P OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rpl14p
PE=1 SV=1
Length = 132
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 16 ISLALPVGAVINCADNTGAKNLFVIAVQG 44
++ L G++I CADNTGA+ L VI+V G
Sbjct: 8 VTQGLEKGSLITCADNTGARELKVISVHG 36
>sp|B9LSR7|RL14_HALLT 50S ribosomal protein L14P OS=Halorubrum lacusprofundi (strain
ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl14p
PE=3 SV=1
Length = 132
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 13 KFRISLALPVGAVINCADNTGAKNLFVIAVQG 44
K ++ L G++I CADNTGA+ L VI+V G
Sbjct: 5 KADVTQGLSKGSLITCADNTGARELKVISVAG 36
>sp|Q18GF9|RL14_HALWD 50S ribosomal protein L14P OS=Haloquadratum walsbyi (strain DSM
16790) GN=rpl14p PE=3 SV=1
Length = 132
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 13 KFRISLALPVGAVINCADNTGAKNLFVIAVQG 44
K ++ L G+++ CADNTGA+ L VI+V G
Sbjct: 5 KADVTKGLERGSLVTCADNTGARELKVISVMG 36
>sp|Q9HIR9|RL14_THEAC 50S ribosomal protein L14P OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpl14p PE=3 SV=1
Length = 132
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 15 RISLALPVGAVINCADNTGAKNLFVIAVQ 43
R + LP+GA I CADNTGA+++ +I V+
Sbjct: 7 RQTRGLPLGANITCADNTGARSISLIDVK 35
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,931,800
Number of Sequences: 539616
Number of extensions: 699856
Number of successful extensions: 2006
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1939
Number of HSP's gapped (non-prelim): 75
length of query: 64
length of database: 191,569,459
effective HSP length: 36
effective length of query: 28
effective length of database: 172,143,283
effective search space: 4820011924
effective search space used: 4820011924
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)