Query psy6164
Match_columns 64
No_of_seqs 108 out of 575
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 19:18:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6164.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6164hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j21_J 50S ribosomal protein L 99.8 5.8E-21 2E-25 129.5 4.0 55 1-55 1-56 (141)
2 3u5e_V L17A, YL32, 60S ribosom 99.7 7.3E-19 2.5E-23 118.7 4.5 51 6-56 3-53 (137)
3 1vq8_K 50S ribosomal protein L 99.7 4.3E-17 1.5E-21 109.3 4.1 46 10-55 2-47 (132)
4 1whi_A Ribosomal protein L14; 99.3 1E-12 3.4E-17 87.0 3.7 31 19-51 1-31 (122)
5 3bbo_M Ribosomal protein L14; 99.3 9.7E-13 3.3E-17 87.0 3.6 31 19-51 1-31 (121)
6 3v2d_O 50S ribosomal protein L 99.3 2.1E-12 7.3E-17 85.5 3.9 30 19-48 1-30 (122)
7 3r8s_K 50S ribosomal protein L 99.3 2.3E-12 7.8E-17 85.3 3.8 30 19-48 1-30 (122)
8 1wjq_A KIAA1798 protein; MBT d 59.0 15 0.00051 23.1 4.1 47 13-59 7-53 (107)
9 2eqm_A PHD finger protein 20-l 37.7 64 0.0022 19.1 4.9 45 13-57 13-57 (88)
10 1wjr_A KIAA1617 protein; MBT d 34.2 32 0.0011 21.8 2.8 43 17-59 9-51 (127)
11 2rcf_A Unidentified carboxysom 30.1 36 0.0012 20.9 2.4 38 6-43 16-53 (91)
12 2lx9_A Ferrous iron transport 28.2 38 0.0013 19.5 2.2 39 16-54 27-65 (83)
13 3e19_A FEOA; transcriptional r 26.0 58 0.002 17.8 2.6 37 16-53 32-68 (77)
14 2gcx_A FEOA, ferrous iron tran 25.9 72 0.0025 17.3 3.0 38 16-53 27-64 (75)
15 3sd4_A PHD finger protein 20; 25.8 92 0.0031 17.3 4.1 42 16-58 9-51 (69)
16 3mhx_A Putative ferrous iron t 23.3 71 0.0024 18.0 2.7 40 14-53 30-70 (85)
17 3ers_X TRNA-binding protein YG 21.3 54 0.0019 20.5 2.0 25 19-43 13-37 (118)
18 3feo_A MBT domain-containing p 21.1 1.3E+02 0.0046 22.5 4.5 38 18-55 41-84 (437)
No 1
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.82 E-value=5.8e-21 Score=129.46 Aligned_cols=55 Identities=36% Similarity=0.504 Sum_probs=44.0
Q ss_pred CCCCCCCCCCc-ccceeecccccccEEEEecCcCCceEEEEEEeCccccccchhhh
Q psy6164 1 MSKRGRGGSAG-AKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKDLTTFEEFE 55 (64)
Q Consensus 1 m~k~~~~~~~~-~k~rit~giq~~s~lnvADNSGAK~l~iI~V~g~kgrlnr~~~~ 55 (64)
|||+++|+..+ +++++|+|||++|+|+||||||||+++||+|+|++|+++|.|+-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~mIq~~t~L~VaDNSGAk~v~cI~Vlg~kg~~~r~~~A 56 (141)
T 3j21_J 1 MAKKGAGATRGVSAVRPTRALPVGAYLTVADNSGAKVIQIIGVVEYHGTRRRLASA 56 (141)
T ss_dssp ---------CCCCCSBCCCCBCTTCEEEECSSSSEEEEEEEEETTCCCCTTCCCCB
T ss_pred CCccccCCccccccccccceeccCCEEEEccCCCCcEEEEEEEcCCCCcccccccC
Confidence 89999999998 89999999999999999999999999999999999999998764
No 2
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=99.75 E-value=7.3e-19 Score=118.70 Aligned_cols=51 Identities=51% Similarity=0.843 Sum_probs=47.5
Q ss_pred CCCCCcccceeecccccccEEEEecCcCCceEEEEEEeCccccccchhhhc
Q psy6164 6 RGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKDLTTFEEFER 56 (64)
Q Consensus 6 ~~~~~~~k~rit~giq~~s~lnvADNSGAK~l~iI~V~g~kgrlnr~~~~~ 56 (64)
+|++++.++++|++||++|+|+||||||||.++||+|+|+++|+||+++-.
T Consensus 3 ~~~~~~~~~~~~~gl~~~t~L~VaDNSGAk~v~cI~Vlg~~~r~~r~~~A~ 53 (137)
T 3u5e_V 3 GNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAAS 53 (137)
T ss_dssp CSSCCSCCCCCCCCEETTCEEEECBSSSBCEEEEEEETTCCCCTTCCCEEC
T ss_pred ccccCcceeeecccccCCCEEEEeeCCCCcEEEEEEEeCCCCcccccccCC
Confidence 577889999999999999999999999999999999999999999987643
No 3
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=99.66 E-value=4.3e-17 Score=109.31 Aligned_cols=46 Identities=33% Similarity=0.446 Sum_probs=42.7
Q ss_pred CcccceeecccccccEEEEecCcCCceEEEEEEeCccccccchhhh
Q psy6164 10 AGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKDLTTFEEFE 55 (64)
Q Consensus 10 ~~~k~rit~giq~~s~lnvADNSGAK~l~iI~V~g~kgrlnr~~~~ 55 (64)
.+.++++|+|||++|+|+||||||||+++||+|+|++|+++|.|.-
T Consensus 2 ~~~~~~~~~mIq~~t~l~vaDNSGAk~v~cI~V~g~~g~~~r~p~a 47 (132)
T 1vq8_K 2 EALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKA 47 (132)
T ss_dssp CCCSSEECCCEETTCEEEECBSSSEEEEEEEEETTCCCCTTCCCEE
T ss_pred CCcccccccccccCCEEEEeeCCCCcEEEEEEEeCccCcccccCCC
Confidence 4568999999999999999999999999999999999999998653
No 4
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=99.31 E-value=1e-12 Score=86.96 Aligned_cols=31 Identities=29% Similarity=0.431 Sum_probs=28.1
Q ss_pred ccccccEEEEecCcCCceEEEEEEeCccccccc
Q psy6164 19 ALPVGAVINCADNTGAKNLFVIAVQGVKDLTTF 51 (64)
Q Consensus 19 giq~~s~lnvADNSGAK~l~iI~V~g~kgrlnr 51 (64)
|||.+|+|+||||||||.++||+|+| |+++|
T Consensus 1 MIq~~t~l~vaDNSGAk~v~cI~vlg--g~~~r 31 (122)
T 1whi_A 1 MIQQESRLKVADNSGAREVLVIKVLG--GSGRR 31 (122)
T ss_dssp CBCTTCEEEECBSSSEEEEEEEEECS--STTCC
T ss_pred CCCccCEEEEeECCCCcEEEEEEEcC--CCccc
Confidence 79999999999999999999999999 55554
No 5
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.31 E-value=9.7e-13 Score=87.04 Aligned_cols=31 Identities=29% Similarity=0.440 Sum_probs=28.2
Q ss_pred ccccccEEEEecCcCCceEEEEEEeCccccccc
Q psy6164 19 ALPVGAVINCADNTGAKNLFVIAVQGVKDLTTF 51 (64)
Q Consensus 19 giq~~s~lnvADNSGAK~l~iI~V~g~kgrlnr 51 (64)
|||++|+|+||||||||+++||+|+| |+++|
T Consensus 1 MIq~~t~l~vaDNSGAk~v~cI~Vlg--g~~~r 31 (121)
T 3bbo_M 1 MIQPQTHLNVADNSGARELMCIRIIG--ASNRR 31 (121)
T ss_dssp CCCSSCEEEECSSSSEEEEEEEEECS--SSCCC
T ss_pred CCCccCEEEEeeCCCCcEEEEEEEcC--CCCcc
Confidence 79999999999999999999999999 55554
No 6
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=99.28 E-value=2.1e-12 Score=85.50 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=27.8
Q ss_pred ccccccEEEEecCcCCceEEEEEEeCcccc
Q psy6164 19 ALPVGAVINCADNTGAKNLFVIAVQGVKDL 48 (64)
Q Consensus 19 giq~~s~lnvADNSGAK~l~iI~V~g~kgr 48 (64)
|||.+|+|+||||||||.++||+|+|.+.+
T Consensus 1 MIq~~t~L~vaDNSGAk~v~cI~Vlg~~~r 30 (122)
T 3v2d_O 1 MIQPQTYLEVADNTGARKIMCIRVLKGSNA 30 (122)
T ss_dssp CBCTTCEEEECBSSSEEEEEEEEEESTTTC
T ss_pred CCCCCCEEEEeeCCCCcEEEEEEEeCCCCC
Confidence 799999999999999999999999997544
No 7
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=99.27 E-value=2.3e-12 Score=85.35 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=27.6
Q ss_pred ccccccEEEEecCcCCceEEEEEEeCcccc
Q psy6164 19 ALPVGAVINCADNTGAKNLFVIAVQGVKDL 48 (64)
Q Consensus 19 giq~~s~lnvADNSGAK~l~iI~V~g~kgr 48 (64)
|||.+|+|+||||||||.++||+|+|.+.+
T Consensus 1 MIq~~t~L~vaDNSGAk~v~cI~Vlgg~~r 30 (122)
T 3r8s_K 1 MIQEQTMLNVADNSGARRVMCIKVLGGSHR 30 (122)
T ss_dssp CBCTTCEEEECBTTSEEEEEEEEECSSSSC
T ss_pred CCCCCCEEEEccCCCCceEEEEEEeCCCCC
Confidence 799999999999999999999999996543
No 8
>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=59.04 E-value=15 Score=23.09 Aligned_cols=47 Identities=11% Similarity=0.138 Sum_probs=36.5
Q ss_pred cceeecccccccEEEEecCcCCceEEEEEEeCccccccchhhhcccc
Q psy6164 13 KFRISLALPVGAVINCADNTGAKNLFVIAVQGVKDLTTFEEFERFDR 59 (64)
Q Consensus 13 k~rit~giq~~s~lnvADNSGAK~l~iI~V~g~kgrlnr~~~~~~~~ 59 (64)
|.+...+.++|..|.++|-.--..+.+-.|....+.+=++.|+-+|.
T Consensus 7 ~~~p~~~F~~GMKLEAvD~~~p~~icvATV~~v~g~rl~v~fDGw~~ 53 (107)
T 1wjq_A 7 GVKPPHGFQKKMKLEVVDKRNPMFIRVATVADTDDHRVKVHFDGWNN 53 (107)
T ss_dssp CCCCSSSCCSSCEEEEECTTCTTCEEEEEEEEECSSCEEEECSSSCG
T ss_pred ccCCcccCCCCCEEEEEcCCCCCcEEeEEEEEecCCEEEEEeCCCCC
Confidence 55667899999999999988777677777776677777777877653
No 9
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=37.66 E-value=64 Score=19.15 Aligned_cols=45 Identities=18% Similarity=0.174 Sum_probs=28.5
Q ss_pred cceeecccccccEEEEecCcCCceEEEEEEeCccccccchhhhcc
Q psy6164 13 KFRISLALPVGAVINCADNTGAKNLFVIAVQGVKDLTTFEEFERF 57 (64)
Q Consensus 13 k~rit~giq~~s~lnvADNSGAK~l~iI~V~g~kgrlnr~~~~~~ 57 (64)
..+...+.++|..|.+.|--+.-..-.|.+....+..=+..|..+
T Consensus 13 ~~~~~~~F~vGmkLEA~D~~~~~~~a~i~~v~~~~~~v~VHfdGW 57 (88)
T 2eqm_A 13 PNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERW 57 (88)
T ss_dssp CSCSSCCCCSSCEEEEECTTSCEEEEEEEEEETTTTEEEEEESSS
T ss_pred CCCCcCcCCCCCEEEEEcCCCCeeEEEEEEEeccCCEEEEEECCC
Confidence 445577899999999999666554444555444444334455444
No 10
>1wjr_A KIAA1617 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=34.23 E-value=32 Score=21.79 Aligned_cols=43 Identities=12% Similarity=0.146 Sum_probs=35.5
Q ss_pred ecccccccEEEEecCcCCceEEEEEEeCccccccchhhhcccc
Q psy6164 17 SLALPVGAVINCADNTGAKNLFVIAVQGVKDLTTFEEFERFDR 59 (64)
Q Consensus 17 t~giq~~s~lnvADNSGAK~l~iI~V~g~kgrlnr~~~~~~~~ 59 (64)
.-.+++|..|.++|---...+-+-.|....|..=++.|+-+|.
T Consensus 9 ~~~f~~GmKLEa~D~~~p~~~~vAtV~~v~g~rl~l~~dG~~~ 51 (127)
T 1wjr_A 9 IDLITVGSLIELQDSQNPFQYWIVSVIENVGGRLRLRYVGLED 51 (127)
T ss_dssp HHHCCTTCEEEEECSSCSSCEEEEECCCEETTEEEECBTTCSS
T ss_pred hhhccCCCEeEEecCCCCCcEEEEEEeeeeCCEEEEEecCCCC
Confidence 4578999999999998888888878887777777788877775
No 11
>2rcf_A Unidentified carboxysome polypeptide; cyclic pentamer, structural protein; 2.15A {Halothiobacillus neapolitanus} SCOP: b.40.15.1
Probab=30.13 E-value=36 Score=20.91 Aligned_cols=38 Identities=8% Similarity=-0.081 Sum_probs=28.3
Q ss_pred CCCCCcccceeecccccccEEEEecCcCCceEEEEEEe
Q psy6164 6 RGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQ 43 (64)
Q Consensus 6 ~~~~~~~k~rit~giq~~s~lnvADNSGAK~l~iI~V~ 43 (64)
..+-.+.|+.+-.-++.+..+..+|.-||..=..+-+.
T Consensus 16 ~~~L~G~kLlvV~~~~~g~~~VAvD~vGAG~Ge~Vlv~ 53 (91)
T 2rcf_A 16 IADMGHKPLLVVWEKPGAPRQVAVDAIGCIPGDWVLCV 53 (91)
T ss_dssp CTTSCSSCEEEEESSTTSCCEEEEESSCCCTTCEEEEE
T ss_pred cCCCCCcEEEEEEEcCCCCEEEEEECCCCCCCCEEEEe
Confidence 34556668877776688999999999999875554444
No 12
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=28.20 E-value=38 Score=19.47 Aligned_cols=39 Identities=15% Similarity=0.171 Sum_probs=30.3
Q ss_pred eecccccccEEEEecCcCCceEEEEEEeCccccccchhh
Q psy6164 16 ISLALPVGAVINCADNTGAKNLFVIAVQGVKDLTTFEEF 54 (64)
Q Consensus 16 it~giq~~s~lnvADNSGAK~l~iI~V~g~kgrlnr~~~ 54 (64)
..+||-+|+.+.|..++-..--.+|.|.|+.=.|+|.+-
T Consensus 27 ~~mGl~pG~~V~Vi~~ap~ggPi~v~v~g~~iaLr~~~A 65 (83)
T 2lx9_A 27 LSLGMLPGSSFNVVRVAPLGDPIHIETRRVSLVLRKKDL 65 (83)
T ss_dssp HHSSCCSSSEEEEEEECTTTCCEEEECSSCEEEECHHHH
T ss_pred HHCCCCCCCEEEEEEeCCCCCcEEEEECCEEEEcCHHHh
Confidence 478999999999998876556677788887666666553
No 13
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=26.02 E-value=58 Score=17.81 Aligned_cols=37 Identities=24% Similarity=0.281 Sum_probs=26.0
Q ss_pred eecccccccEEEEecCcCCceEEEEEEeCccccccchh
Q psy6164 16 ISLALPVGAVINCADNTGAKNLFVIAVQGVKDLTTFEE 53 (64)
Q Consensus 16 it~giq~~s~lnvADNSGAK~l~iI~V~g~kgrlnr~~ 53 (64)
..+||.+|+.+.|..+.-.. -.+|.|.|..=.+++..
T Consensus 32 ~~lGi~~G~~v~v~~~~p~g-p~~v~v~g~~iaL~~~~ 68 (77)
T 3e19_A 32 VSMGLTPGATIQVLESHPMG-PIIISVGGVRFAIGKGL 68 (77)
T ss_dssp HTTTCSTTCEEEEEEC--CC-CEEEEETTEEEEECHHH
T ss_pred HHCCCCCCCEEEEEEecCCC-CEEEEECCEEEEeCHHH
Confidence 37899999999999876443 56788877655555544
No 14
>2gcx_A FEOA, ferrous iron transport protein A; NMR {Klebsiella pneumoniae} SCOP: b.34.1.2
Probab=25.87 E-value=72 Score=17.26 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=28.1
Q ss_pred eecccccccEEEEecCcCCceEEEEEEeCccccccchh
Q psy6164 16 ISLALPVGAVINCADNTGAKNLFVIAVQGVKDLTTFEE 53 (64)
Q Consensus 16 it~giq~~s~lnvADNSGAK~l~iI~V~g~kgrlnr~~ 53 (64)
..+||-+|+.+.|..+.--.--.+|.|.+..=.|++.+
T Consensus 27 ~~lGl~pG~~v~v~~~~p~~gpi~v~v~~~~iaL~~~~ 64 (75)
T 2gcx_A 27 LSLGMLPGSSFHVVRVAPLGDPVHIETRRVSLVLRKKD 64 (75)
T ss_dssp TTTTCCSSEEEEECCCCSSCCEEEEEETTEEEEEETTT
T ss_pred HHCCCCCCCEEEEEEeCCCCCCEEEEECCEEEEcCHHH
Confidence 48899999999999887555567777777655555543
No 15
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=25.82 E-value=92 Score=17.25 Aligned_cols=42 Identities=14% Similarity=0.242 Sum_probs=25.7
Q ss_pred eecccccccEEEEecCcCCc-eEEEEEEeCccccccchhhhccc
Q psy6164 16 ISLALPVGAVINCADNTGAK-NLFVIAVQGVKDLTTFEEFERFD 58 (64)
Q Consensus 16 it~giq~~s~lnvADNSGAK-~l~iI~V~g~kgrlnr~~~~~~~ 58 (64)
...+.++|..|.+.|-.+-- .+.|+.|.-..+++ +..|+.++
T Consensus 9 ~~~~F~vGmkLEa~d~~~p~~~AtV~~v~~~~~~~-~VhfdGw~ 51 (69)
T 3sd4_A 9 RGISFEVGAQLEARDRLKNWYPAHIEDIDYEEGKV-LIHFKRWN 51 (69)
T ss_dssp TTCCCSTTCEEEEECTTSCEEEEEEEEEETTTTEE-EEEETTSC
T ss_pred CCCCcCCCCEEEEEECCCCccccEEEEEeccCCEE-EEEeCCCC
Confidence 35678999999999976653 34455543233444 55555443
No 16
>3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding, prokaryotic SH3 stenotrophomonus maltophilia, metal transport; 1.70A {Stenotrophomonas maltophilia}
Probab=23.35 E-value=71 Score=17.95 Aligned_cols=40 Identities=10% Similarity=0.022 Sum_probs=28.7
Q ss_pred ceeecccccccEEEEecCcCCc-eEEEEEEeCccccccchh
Q psy6164 14 FRISLALPVGAVINCADNTGAK-NLFVIAVQGVKDLTTFEE 53 (64)
Q Consensus 14 ~rit~giq~~s~lnvADNSGAK-~l~iI~V~g~kgrlnr~~ 53 (64)
+=..+||-+|+.+.|....--. --.+|.|.|..=-|++..
T Consensus 30 rL~~lGl~pG~~v~V~~~~p~g~~pi~v~v~g~~iaL~~~~ 70 (85)
T 3mhx_A 30 RLRELGFVKGEEVRMVAKGPVGGEPLLVQVGFTRFALRISE 70 (85)
T ss_dssp HHHHTTCCTTCEEEEEESCSSSCSCEEEEETTEEEEECHHH
T ss_pred HHHHCCCCCCCEEEEEEeCCCCCCCEEEEECCEEEEcCHHH
Confidence 3348899999999999987544 456677777655555544
No 17
>3ers_X TRNA-binding protein YGJH; oligonucleotide-oligosaccharide binding fold; 1.87A {Escherichia coli}
Probab=21.26 E-value=54 Score=20.48 Aligned_cols=25 Identities=20% Similarity=0.567 Sum_probs=22.5
Q ss_pred ccccccEEEEecCcCCceEEEEEEe
Q psy6164 19 ALPVGAVINCADNTGAKNLFVIAVQ 43 (64)
Q Consensus 19 giq~~s~lnvADNSGAK~l~iI~V~ 43 (64)
-|.+|..+.|-+.-+|..+++..|-
T Consensus 13 dirVG~I~~~e~hp~AdKL~~~~VD 37 (118)
T 3ers_X 13 EMRVGKIVEVKRHENADKLYIVQVD 37 (118)
T ss_dssp CEEEEEEEEEECCTTCSSCEEEEEE
T ss_pred eEEEEEEEEEEEcCCCCCcEEEEEE
Confidence 3678999999999999999999986
No 18
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens}
Probab=21.10 E-value=1.3e+02 Score=22.47 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=30.3
Q ss_pred cccccccEEEEecCcCC---c---eEEEEEEeCccccccchhhh
Q psy6164 18 LALPVGAVINCADNTGA---K---NLFVIAVQGVKDLTTFEEFE 55 (64)
Q Consensus 18 ~giq~~s~lnvADNSGA---K---~l~iI~V~g~kgrlnr~~~~ 55 (64)
-.|++|..|.|+|..-. + .+.||.+.|+.-+|+-+-|+
T Consensus 41 ~~~~~GmklEv~~~~~~~~~~~yWvA~V~~~~G~rllLry~G~~ 84 (437)
T 3feo_A 41 GDISENVRVEVPNTDCSLPTKVFWIAGIVKLAGYNALLRYEGFE 84 (437)
T ss_dssp TTCCTTCEEEEECSCC----CCEEEEEEEEEETTEEEEEETTCT
T ss_pred cccCCCCEEEEecCCCCCCcCceEEEEEeeecceEEEEEecccC
Confidence 56889999999986542 3 78899999999888877665
Done!