RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6164
(64 letters)
>gnl|CDD|185418 PTZ00054, PTZ00054, 60S ribosomal protein L23; Provisional.
Length = 139
Score = 80.5 bits (199), Expect = 1e-21
Identities = 31/45 (68%), Positives = 39/45 (86%)
Query: 2 SKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
KRGRGG G KFR++L LPVGAV+NCADN+GAKNL++IAV+G+
Sbjct: 1 MKRGRGGVGGNKFRVTLGLPVGAVVNCADNSGAKNLYIIAVKGIH 45
>gnl|CDD|181478 PRK08571, rpl14p, 50S ribosomal protein L14P; Reviewed.
Length = 132
Score = 48.4 bits (116), Expect = 4e-09
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 11 GAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
G + +++ LPVGA + CADNTGAK + +I+V+G K
Sbjct: 3 GIRSKVTRGLPVGARLVCADNTGAKEVEIISVKGYK 38
>gnl|CDD|132712 TIGR03673, rpl14p_arch, 50S ribosomal protein L14P. Part of the
50S ribosomal subunit. Forms a cluster with proteins L3
and L24e, part of which may contact the 16S rRNA in 2
intersubunit bridges.
Length = 131
Score = 46.6 bits (111), Expect = 2e-08
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 11 GAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
G + I+ ALPVGA++ CADNTGAK + VI+V+G K
Sbjct: 2 GIRAGITRALPVGALLVCADNTGAKEVEVISVKGYK 37
>gnl|CDD|223171 COG0093, RplN, Ribosomal protein L14 [Translation, ribosomal
structure and biogenesis].
Length = 122
Score = 39.1 bits (92), Expect = 1e-05
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 19 ALPVGAVINCADNTGAKNLFVIAVQGVK 46
+ V +N ADN+GAK + I V G
Sbjct: 1 MIQVQTRLNVADNSGAKEVMCIKVLGGS 28
>gnl|CDD|201105 pfam00238, Ribosomal_L14, Ribosomal protein L14p/L23e.
Length = 122
Score = 38.2 bits (90), Expect = 3e-05
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 19 ALPVGAVINCADNTGAKNLFVIAVQGVK 46
+ VG +N ADN+GAK + I V G
Sbjct: 1 MIQVGTRLNVADNSGAKKVKCIKVLGGS 28
>gnl|CDD|132588 TIGR03549, TIGR03549, YcaO domain protein. This family consists of
remarkably well-conserved proteins from gamma and beta
Proteobacteria, heavily skewed towards organisms of
marine environments. Its gene neighborhood is not
conserved. This family has an OsmC-like N-terminal
domain. It shares a YcaO domain, frequently associated
with ATP-dependent cyclodehydration for peptide
modification. The function is unknown. Fifteen of the
first sixteen members of this family are from
selenouridine-positive genomes, but this correlation may
not be meaningful.
Length = 718
Score = 28.6 bits (64), Expect = 0.16
Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 13 KFRISLALP--------VGAVINCADNTGAKNLFVIAVQGVKDLTTFEEFERFD-RGNFN 63
K I LAL VG + DNT + LF AV V ++T EE E D R NFN
Sbjct: 611 KLLIYLALQRHEDALELVGMFLQFNDNTVERGLFYQAVNAVLEVTLDEELELEDYRRNFN 670
>gnl|CDD|216010 pfam00588, SpoU_methylase, SpoU rRNA Methylase family. This
family of proteins probably use S-AdoMet.
Length = 142
Score = 25.5 bits (57), Expect = 1.4
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 22 VGAVINCADNTGAKNLFVIAVQGV 45
+GA+ A GA L ++ +
Sbjct: 15 LGAIARTAAAFGADGLILVEPRCA 38
>gnl|CDD|180117 PRK05483, rplN, 50S ribosomal protein L14; Validated.
Length = 122
Score = 25.5 bits (57), Expect = 1.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 27 NCADNTGAKNLFVIAVQG 44
N ADN+GAK + I V G
Sbjct: 9 NVADNSGAKEVMCIKVLG 26
>gnl|CDD|224428 COG1511, COG1511, Predicted membrane protein [Function unknown].
Length = 780
Score = 25.5 bits (56), Expect = 2.2
Identities = 13/47 (27%), Positives = 16/47 (34%), Gaps = 7/47 (14%)
Query: 8 GSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKDLTTFEEF 54
GS A F +LAL VGA++ L L F
Sbjct: 582 GSGLAPFYTALALWVGALL-------TSLLTTDVDLSDGILNGRVYF 621
>gnl|CDD|225363 COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus
assembly pathway, ATPase PilB [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 500
Score = 25.0 bits (55), Expect = 2.8
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 21 PVGAVINCADNTGAKNLFVIAVQGVK-DLTTFEEFER 56
+ A G + L ++ V +TT EE R
Sbjct: 460 SEAEIRKLARQAGMRTLREDGLEKVLQGITTLEEVLR 496
>gnl|CDD|176997 CHL00057, rpl14, ribosomal protein L14.
Length = 122
Score = 24.5 bits (54), Expect = 3.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 27 NCADNTGAKNLFVIAVQG 44
N ADN+GA+ L I V G
Sbjct: 9 NVADNSGARKLMCIRVLG 26
>gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein. This family consists of
bacterial MreB and Mbl proteins as well as two related
archaeal sequences. MreB is known to be a rod
shape-determining protein in bacteria and goes to make
up the bacterial cytoskeleton. Genes coding for MreB/Mbl
are only found in elongated bacteria, not in coccoid
forms. It has been speculated that constituents of the
eukaryotic cytoskeleton (tubulin, actin) may have
evolved from prokaryotic precursor proteins closely
related to today's bacterial proteins FtsZ and MreB/Mbl.
Length = 327
Score = 24.8 bits (55), Expect = 3.7
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 3 KRGRGGSAGAKFRISLALPVG-------AVINCADNTGAKNLFVI 40
K+ G + +K R+ + +P G AV A N GA+ +F+I
Sbjct: 83 KKVHGRRSLSKPRVVICVPSGITEVERRAVKEAAKNAGAREVFLI 127
>gnl|CDD|130139 TIGR01067, rplN_bact, ribosomal protein L14, bacterial/organelle.
This model distinguishes bacterial and most organellar
examples of ribosomal protein L14 from all archaeal and
eukaryotic forms [Protein synthesis, Ribosomal
proteins: synthesis and modification].
Length = 122
Score = 24.2 bits (53), Expect = 4.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 23 GAVINCADNTGAKNLFVIAVQG 44
+ +N ADN+GAK + I V G
Sbjct: 5 QSRLNVADNSGAKKVQCIKVLG 26
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.140 0.402
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,226,488
Number of extensions: 227132
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 13
Length of query: 64
Length of database: 10,937,602
Length adjustment: 35
Effective length of query: 29
Effective length of database: 9,385,212
Effective search space: 272171148
Effective search space used: 272171148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)