RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6164
         (64 letters)



>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome,
          ribosomal R ribosomal protein, STM1, eukaryotic
          ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M
          1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 2x7n_C
          3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
          Length = 137

 Score = 49.0 bits (116), Expect = 2e-09
 Identities = 26/38 (68%), Positives = 34/38 (89%)

Query: 7  GGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQG 44
           G+ G KFRISL LPVGA++NCADN+GA+NL++IAV+G
Sbjct: 4  NGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKG 41


>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein
          complex, RNA-RNA complex, PROT complex, peptidyl
          transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
          2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB:
          1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K*
          1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K*
          1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
          Length = 132

 Score = 47.4 bits (112), Expect = 7e-09
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 11 GAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
               ++  L  G++I CADNTGA+ L VI+V G  
Sbjct: 3  ALGADVTQGLEKGSLITCADNTGARELKVISVHGYS 38


>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach
          chloroplast ribosome, ribonucleoprotein particle,
          macromolecular complex; 9.40A {Spinacea oleracea}
          Length = 121

 Score = 36.2 bits (83), Expect = 1e-04
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 22 VGAVINCADNTGAKNLFVIAVQG 44
              +N ADN+GA+ L  I + G
Sbjct: 4  PQTHLNVADNSGARELMCIRIIG 26


>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus
          stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n*
          1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
          Length = 122

 Score = 35.8 bits (82), Expect = 1e-04
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 22 VGAVINCADNTGAKNLFVIAVQG 44
            + +  ADN+GA+ + VI V G
Sbjct: 4  QESRLKVADNSGAREVLVIKVLG 26


>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA,
          transfer RNA, 23S ribosomal subunit, ribosome recycling
          factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
          3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K
          3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K
          2awb_K 1vt2_K 2i2v_K 2i2t_K* 2qao_K* ...
          Length = 122

 Score = 35.4 bits (81), Expect = 2e-04
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 22 VGAVINCADNTGAKNLFVIAVQG 44
             ++N ADN+GA+ +  I V G
Sbjct: 4  EQTMLNVADNSGARRVMCIKVLG 26


>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA,
          protein Y, stress RES stationary phase, ribosome
          hibernation, ribosome; 2.70A {Thermus thermophilus}
          PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O
          2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O
          2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
          Length = 122

 Score = 35.0 bits (80), Expect = 3e-04
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 22 VGAVINCADNTGAKNLFVIAVQG 44
              +  ADNTGA+ +  I V  
Sbjct: 4  PQTYLEVADNTGARKIMCIRVLK 26


>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
          factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
          d.211.1.1 PDB: 1k1b_A
          Length = 241

 Score = 24.0 bits (53), Expect = 3.6
 Identities = 3/22 (13%), Positives = 8/22 (36%)

Query: 12 AKFRISLALPVGAVINCADNTG 33
              ++L    G  ++  +N  
Sbjct: 25 VHRLVNLFQQGGRELDIYNNLR 46


>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase,
          GTP-binding protein,, signaling protein; HET: GNP;
          2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
          Length = 113

 Score = 23.6 bits (51), Expect = 4.0
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 13 KFRISLALPVGAVINCADNTGAKNLFVI 40
          ++     L   AV+N  DN   K++F +
Sbjct: 51 RYNALYPLDRLAVVNVKDNPPMKDMFKL 78


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.140    0.402 

Gapped
Lambda     K      H
   0.267   0.0549    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 961,903
Number of extensions: 42908
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 8
Length of query: 64
Length of database: 6,701,793
Length adjustment: 35
Effective length of query: 29
Effective length of database: 5,724,558
Effective search space: 166012182
Effective search space used: 166012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)