RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6164
         (64 letters)



>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon
          Haloarcula marismortui [TaxId: 2238]}
          Length = 132

 Score = 49.0 bits (117), Expect = 6e-10
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 11 GAKFRISLALPVGAVINCADNTGAKNLFVIAVQG 44
               ++  L  G++I CADNTGA+ L VI+V G
Sbjct: 3  ALGADVTQGLEKGSLITCADNTGARELKVISVHG 36


>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia
          coli [TaxId: 562]}
          Length = 121

 Score = 34.8 bits (80), Expect = 1e-04
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 22 VGAVINCADNTGAKNLFVIAVQG 44
             ++N ADN+GA+ +  I V G
Sbjct: 3  EQTMLNVADNSGARRVMCIKVLG 25


>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus
          stearothermophilus [TaxId: 1422]}
          Length = 122

 Score = 34.4 bits (79), Expect = 2e-04
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 22 VGAVINCADNTGAKNLFVIAVQG 44
            + +  ADN+GA+ + VI V G
Sbjct: 4  QESRLKVADNSGAREVLVIKVLG 26


>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus
          thermophilus [TaxId: 274]}
          Length = 122

 Score = 33.9 bits (78), Expect = 3e-04
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 22 VGAVINCADNTGAKNLFVIAVQG 44
              +  ADNTGA+ +  I V  
Sbjct: 4  PQTYLEVADNTGARKIMCIRVLK 26


>d1ohea2 c.45.1.1 (A:199-380) Proline directed phosphatase CDC14b2
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 182

 Score = 25.0 bits (54), Expect = 0.53
 Identities = 5/17 (29%), Positives = 11/17 (64%)

Query: 47 DLTTFEEFERFDRGNFN 63
          +L  +E +E+ + G+ N
Sbjct: 3  NLDEYEHYEKAENGDLN 19


>d1aora2 d.152.1.1 (A:1-210) Aldehyde ferredoxin oxidoreductase
           {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 210

 Score = 23.1 bits (50), Expect = 3.3
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 19/44 (43%)

Query: 5   GRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKDL 48
           GRGG             VGAV+      G+KNL  IAV+G K +
Sbjct: 185 GRGG-------------VGAVM------GSKNLKAIAVEGSKTV 209


>d1mxia_ c.116.1.1 (A:) Hypothetical tRNA/rRNA methyltransfease
          HI0766 (YibK homologue) {Haemophilus influenzae [TaxId:
          727]}
          Length = 156

 Score = 22.5 bits (47), Expect = 4.5
 Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 5/31 (16%)

Query: 14 FRISLALP-----VGAVINCADNTGAKNLFV 39
            I L  P      G +I    NTG +   +
Sbjct: 2  LDIVLYEPEIPQNTGNIIRLCANTGFRLHLI 32


>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
           recognition particle receptor FtsY {Escherichia coli
           [TaxId: 562]}
          Length = 211

 Score = 21.9 bits (46), Expect = 7.7
 Identities = 7/32 (21%), Positives = 15/32 (46%)

Query: 21  PVGAVINCADNTGAKNLFVIAVQGVKDLTTFE 52
             G + + AD  G    ++   + ++DL  F+
Sbjct: 169 KGGVIFSVADQFGIPIRYIGVGERIEDLRPFK 200


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.402 

Gapped
Lambda     K      H
   0.267   0.0537    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 222,591
Number of extensions: 7144
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 9
Length of query: 64
Length of database: 2,407,596
Length adjustment: 33
Effective length of query: 31
Effective length of database: 1,954,506
Effective search space: 60589686
Effective search space used: 60589686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)