BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6165
(482 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H19|A Chain A, Structure Of [e271q] Leukotriene A4 Hydrolase
Length = 611
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 93/140 (66%), Gaps = 4/140 (2%)
Query: 157 LKTLGEDNPLTKLIVDLKHTHPDDAFSTCPYEKGHTFLFYLEQLLGGPKDFEPWLKKYLA 216
+KT GE +P TKL+VDL PD A+S+ PYEKG LFYLEQLLGGP+ F +LK Y+
Sbjct: 354 VKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVE 413
Query: 217 EFALQSIDTDNFKAHLTSHFAHKPEI-NQIEWDLWLNTTGMPPHIPKYDTSLQDVCNNLA 275
+F+ +SI TD++K L S+F K ++ NQ++W+ WL + G+PP P YD +L + C L+
Sbjct: 414 KFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALS 473
Query: 276 SRWISWNHTKETPDVTFNFT 295
RWI+ KE +FN T
Sbjct: 474 QRWIT---AKEDDLNSFNAT 490
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 357 PFIYGYDTSLQDVCNNLASRWISWNHTKETPFSKQDLAAFTPGHKIEFLAKSSSYIAIPF 416
P YD +L + C L+ RWI+ F+ DL + EFLA++ +P
Sbjct: 456 PIKPNYDMTLTNACIALSQRWITAKEDDLNSFNATDLKDLSSHQLNEFLAQTLQRAPLPL 515
Query: 417 IYGYDTSLQDVCN 429
G+ +Q+V N
Sbjct: 516 --GHIKRMQEVYN 526
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 415 PFIYGYDTSLQDVCNDLASRWISWNHTKETPFSKQDLAAFTPGQKIEFLAKS 466
P YD +L + C L+ RWI+ F+ DL + Q EFLA++
Sbjct: 456 PIKPNYDMTLTNACIALSQRWITAKEDDLNSFNATDLKDLSSHQLNEFLAQT 507
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 10 DPNSFSRP-ELAVIEHIDLFLDVNFESKTLSGEAHYVIRRKDPNVTNVEKNTK------- 61
D S + P + +H+ L V+F +TL+G A ++ ++ N+ ++ +TK
Sbjct: 6 DTCSLASPASVCRTKHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKV 65
Query: 62 ----STLSYNIGTHVDNFGSKLDITLP 84
+ Y +G GS ++I+LP
Sbjct: 66 VINGQEVKYALGERQSYKGSPMEISLP 92
>pdb|1HS6|A Chain A, Structure Of Leukotriene A4 Hydrolase Complexed With
Bestatin.
pdb|2VJ8|A Chain A, Complex Of Human Leukotriene A4 Hydrolase With A
Hydroxamic Acid Inhibitor
pdb|3FTS|A Chain A, Leukotriene A4 Hydrolase In Complex With Resveratrol
pdb|3FTU|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol
pdb|3FTV|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment N-
(Pyridin-3-Ylmethyl)aniline
pdb|3FTW|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragments N-
(Pyridin-3-Ylmethyl)aniline And Acetate
pdb|3FTX|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol And Bestatin
pdb|3FTY|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 3-
(Benzyloxy)pyridin-2-Amine
pdb|3FU0|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(4-
Fluorobenzoyl)pyridine
pdb|3FU3|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(2-
Amino-1,3-Thiazol-4-Yl)phenol
pdb|3FU5|A Chain A, Leukotriene A4 Hydrolase In Complex With (5-Thiophen-2-
Ylthiophen-2-Yl)methylamine
pdb|3FU6|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment (4-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUD|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Methyl-1-(2-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUE|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Chloroindole And Bestatin
pdb|3FUF|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Fluoroindole And Bestatin
pdb|3FUH|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Hydroxyindole And Bestatin
pdb|3FUI|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Benzyl-4-[(2r)-
Pyrrolidin-2-Ylmethoxy]aniline
pdb|3FUJ|A Chain A, Leukotriene A4 Hydrolase In Complex With
5-[2-(1h-Pyrrol-1- Yl)ethoxy]-1h-Indole
pdb|3FUK|A Chain A, Leukotriene A4 Hydrolase In Complex With 1-[2-(1h-Indol-5-
Yloxy)ethyl]piperidine-4-Carboxylic Acid
pdb|3FUM|A Chain A, Leukotriene A4 Hydrolase In Complex With
(R)-Pyridin-4-Yl[4-
(2-Pyrrolidin-1-Ylethoxy)phenyl]methanol
pdb|3FUN|A Chain A, Leukotriene A4 Hydrolase In Complex With {4-[(2r)-
Pyrrolidin-2-Ylmethoxy]phenyl}(4-Thiophen-3-Ylphenyl)
Methanone
pdb|3FH5|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
(2r)-2-[(4- Benzylphenoxy)methyl]pyrrolidine.
pdb|3FH7|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
4-[(2s)-2-{[4-(4-
Chlorophenoxy)phenoxy]methyl}pyrrolidin-1-Yl]butanoate.
pdb|3FH8|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor 1-[2-(4-
Benzylphenoxy)ethyl]pyrrolidine.
pdb|3FHE|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor N-[3-(4-
Benzylphenoxy)propyl]-N-Methyl-Beta-Alanine.
pdb|3FTZ|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment
2-(pyridin-3- Ylmethoxy)aniline
pdb|3FUL|A Chain A, Leukotriene A4 Hydrolase In Complex With
Pyridin-4-Yl[4-(2-Pyrrolidin-
1-Ylethoxy)phenyl]methanone
pdb|4DPR|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Captopril
Length = 611
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 93/140 (66%), Gaps = 4/140 (2%)
Query: 157 LKTLGEDNPLTKLIVDLKHTHPDDAFSTCPYEKGHTFLFYLEQLLGGPKDFEPWLKKYLA 216
+KT GE +P TKL+VDL PD A+S+ PYEKG LFYLEQLLGGP+ F +LK Y+
Sbjct: 354 VKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVE 413
Query: 217 EFALQSIDTDNFKAHLTSHFAHKPEI-NQIEWDLWLNTTGMPPHIPKYDTSLQDVCNNLA 275
+F+ +SI TD++K L S+F K ++ NQ++W+ WL + G+PP P YD +L + C L+
Sbjct: 414 KFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALS 473
Query: 276 SRWISWNHTKETPDVTFNFT 295
RWI+ KE +FN T
Sbjct: 474 QRWIT---AKEDDLNSFNAT 490
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 357 PFIYGYDTSLQDVCNNLASRWISWNHTKETPFSKQDLAAFTPGHKIEFLAKSSSYIAIPF 416
P YD +L + C L+ RWI+ F+ DL + EFLA++ +P
Sbjct: 456 PIKPNYDMTLTNACIALSQRWITAKEDDLNSFNATDLKDLSSHQLNEFLAQTLQRAPLPL 515
Query: 417 IYGYDTSLQDVCN 429
G+ +Q+V N
Sbjct: 516 --GHIKRMQEVYN 526
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 415 PFIYGYDTSLQDVCNDLASRWISWNHTKETPFSKQDLAAFTPGQKIEFLAKS 466
P YD +L + C L+ RWI+ F+ DL + Q EFLA++
Sbjct: 456 PIKPNYDMTLTNACIALSQRWITAKEDDLNSFNATDLKDLSSHQLNEFLAQT 507
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 10 DPNSFSRP-ELAVIEHIDLFLDVNFESKTLSGEAHYVIRRKDPNVTNVEKNTK------- 61
D S + P + +H+ L V+F +TL+G A ++ ++ N+ ++ +TK
Sbjct: 6 DTCSLASPASVCRTKHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKV 65
Query: 62 ----STLSYNIGTHVDNFGSKLDITLP 84
+ Y +G GS ++I+LP
Sbjct: 66 VINGQEVKYALGERQSYKGSPMEISLP 92
>pdb|3U9W|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Sc57461a
Length = 608
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 93/140 (66%), Gaps = 4/140 (2%)
Query: 157 LKTLGEDNPLTKLIVDLKHTHPDDAFSTCPYEKGHTFLFYLEQLLGGPKDFEPWLKKYLA 216
+KT GE +P TKL+VDL PD A+S+ PYEKG LFYLEQLLGGP+ F +LK Y+
Sbjct: 351 VKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVE 410
Query: 217 EFALQSIDTDNFKAHLTSHFAHKPEI-NQIEWDLWLNTTGMPPHIPKYDTSLQDVCNNLA 275
+F+ +SI TD++K L S+F K ++ NQ++W+ WL + G+PP P YD +L + C L+
Sbjct: 411 KFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALS 470
Query: 276 SRWISWNHTKETPDVTFNFT 295
RWI+ KE +FN T
Sbjct: 471 QRWIT---AKEDDLNSFNAT 487
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 357 PFIYGYDTSLQDVCNNLASRWISWNHTKETPFSKQDLAAFTPGHKIEFLAKSSSYIAIPF 416
P YD +L + C L+ RWI+ F+ DL + EFLA++ +P
Sbjct: 453 PIKPNYDMTLTNACIALSQRWITAKEDDLNSFNATDLKDLSSHQLNEFLAQTLQRAPLPL 512
Query: 417 IYGYDTSLQDVCN 429
G+ +Q+V N
Sbjct: 513 --GHIKRMQEVYN 523
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 415 PFIYGYDTSLQDVCNDLASRWISWNHTKETPFSKQDLAAFTPGQKIEFLAKS 466
P YD +L + C L+ RWI+ F+ DL + Q EFLA++
Sbjct: 453 PIKPNYDMTLTNACIALSQRWITAKEDDLNSFNATDLKDLSSHQLNEFLAQT 504
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 10 DPNSFSRP-ELAVIEHIDLFLDVNFESKTLSGEAHYVIRRKDPNVTNVEKNTK------- 61
D S + P + +H+ L V+F +TL+G A ++ ++ N+ ++ +TK
Sbjct: 3 DTCSLASPASVCRTKHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKV 62
Query: 62 ----STLSYNIGTHVDNFGSKLDITLP 84
+ Y +G GS ++I+LP
Sbjct: 63 VINGQEVKYALGERQSYKGSPMEISLP 89
>pdb|3B7S|A Chain A, [e296q]lta4h In Complex With Rsr Substrate
pdb|3B7T|A Chain A, [e296q]lta4h In Complex With Arg-Ala-Arg Substrate
Length = 616
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 93/140 (66%), Gaps = 4/140 (2%)
Query: 157 LKTLGEDNPLTKLIVDLKHTHPDDAFSTCPYEKGHTFLFYLEQLLGGPKDFEPWLKKYLA 216
+KT GE +P TKL+VDL PD A+S+ PYEKG LFYLEQLLGGP+ F +LK Y+
Sbjct: 359 VKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVE 418
Query: 217 EFALQSIDTDNFKAHLTSHFAHKPEI-NQIEWDLWLNTTGMPPHIPKYDTSLQDVCNNLA 275
+F+ +SI TD++K L S+F K ++ NQ++W+ WL + G+PP P YD +L + C L+
Sbjct: 419 KFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALS 478
Query: 276 SRWISWNHTKETPDVTFNFT 295
RWI+ KE +FN T
Sbjct: 479 QRWIT---AKEDDLNSFNAT 495
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 357 PFIYGYDTSLQDVCNNLASRWISWNHTKETPFSKQDLAAFTPGHKIEFLAKSSSYIAIPF 416
P YD +L + C L+ RWI+ F+ DL + EFLA++ +P
Sbjct: 461 PIKPNYDMTLTNACIALSQRWITAKEDDLNSFNATDLKDLSSHQLNEFLAQTLQRAPLPL 520
Query: 417 IYGYDTSLQDVCN 429
G+ +Q+V N
Sbjct: 521 --GHIKRMQEVYN 531
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 415 PFIYGYDTSLQDVCNDLASRWISWNHTKETPFSKQDLAAFTPGQKIEFLAKS 466
P YD +L + C L+ RWI+ F+ DL + Q EFLA++
Sbjct: 461 PIKPNYDMTLTNACIALSQRWITAKEDDLNSFNATDLKDLSSHQLNEFLAQT 512
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 10 DPNSFSRP-ELAVIEHIDLFLDVNFESKTLSGEAHYVIRRKDPNVTNVEKNTK------- 61
D S + P + +H+ L V+F +TL+G A ++ ++ N+ ++ +TK
Sbjct: 11 DTCSLASPASVCRTKHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKV 70
Query: 62 ----STLSYNIGTHVDNFGSKLDITLP 84
+ Y +G GS ++I+LP
Sbjct: 71 VINGQEVKYALGERQSYKGSPMEISLP 97
>pdb|1SQM|A Chain A, Structure Of [r563a] Leukotriene A4 Hydrolase
Length = 610
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 93/140 (66%), Gaps = 4/140 (2%)
Query: 157 LKTLGEDNPLTKLIVDLKHTHPDDAFSTCPYEKGHTFLFYLEQLLGGPKDFEPWLKKYLA 216
+KT GE +P TKL+VDL PD A+S+ PYEKG LFYLEQLLGGP+ F +LK Y+
Sbjct: 353 VKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVE 412
Query: 217 EFALQSIDTDNFKAHLTSHFAHKPEI-NQIEWDLWLNTTGMPPHIPKYDTSLQDVCNNLA 275
+F+ +SI TD++K L S+F K ++ NQ++W+ WL + G+PP P YD +L + C L+
Sbjct: 413 KFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALS 472
Query: 276 SRWISWNHTKETPDVTFNFT 295
RWI+ KE +FN T
Sbjct: 473 QRWIT---AKEDDLNSFNAT 489
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 357 PFIYGYDTSLQDVCNNLASRWISWNHTKETPFSKQDLAAFTPGHKIEFLAKSSSYIAIPF 416
P YD +L + C L+ RWI+ F+ DL + EFLA++ +P
Sbjct: 455 PIKPNYDMTLTNACIALSQRWITAKEDDLNSFNATDLKDLSSHQLNEFLAQTLQRAPLPL 514
Query: 417 IYGYDTSLQDVCN 429
G+ +Q+V N
Sbjct: 515 --GHIKRMQEVYN 525
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 415 PFIYGYDTSLQDVCNDLASRWISWNHTKETPFSKQDLAAFTPGQKIEFLAKS 466
P YD +L + C L+ RWI+ F+ DL + Q EFLA++
Sbjct: 455 PIKPNYDMTLTNACIALSQRWITAKEDDLNSFNATDLKDLSSHQLNEFLAQT 506
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 10 DPNSFSRP-ELAVIEHIDLFLDVNFESKTLSGEAHYVIRRKDPNVTNVEKNTK------- 61
D S + P + +H+ L V+F +TL+G A ++ ++ N+ ++ +TK
Sbjct: 5 DTCSLASPASVCRTKHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKV 64
Query: 62 ----STLSYNIGTHVDNFGSKLDITLP 84
+ Y +G GS ++I+LP
Sbjct: 65 VINGQEVKYALGERQSYKGSPMEISLP 91
>pdb|2R59|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3041
pdb|3B7R|L Chain L, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3040
pdb|3B7U|X Chain X, Leukotriene A4 Hydrolase Complexed With Kelatorphan
Length = 616
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 93/140 (66%), Gaps = 4/140 (2%)
Query: 157 LKTLGEDNPLTKLIVDLKHTHPDDAFSTCPYEKGHTFLFYLEQLLGGPKDFEPWLKKYLA 216
+KT GE +P TKL+VDL PD A+S+ PYEKG LFYLEQLLGGP+ F +LK Y+
Sbjct: 359 VKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVE 418
Query: 217 EFALQSIDTDNFKAHLTSHFAHKPEI-NQIEWDLWLNTTGMPPHIPKYDTSLQDVCNNLA 275
+F+ +SI TD++K L S+F K ++ NQ++W+ WL + G+PP P YD +L + C L+
Sbjct: 419 KFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALS 478
Query: 276 SRWISWNHTKETPDVTFNFT 295
RWI+ KE +FN T
Sbjct: 479 QRWIT---AKEDDLNSFNAT 495
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 357 PFIYGYDTSLQDVCNNLASRWISWNHTKETPFSKQDLAAFTPGHKIEFLAKSSSYIAIPF 416
P YD +L + C L+ RWI+ F+ DL + EFLA++ +P
Sbjct: 461 PIKPNYDMTLTNACIALSQRWITAKEDDLNSFNATDLKDLSSHQLNEFLAQTLQRAPLPL 520
Query: 417 IYGYDTSLQDVCN 429
G+ +Q+V N
Sbjct: 521 --GHIKRMQEVYN 531
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 415 PFIYGYDTSLQDVCNDLASRWISWNHTKETPFSKQDLAAFTPGQKIEFLAKS 466
P YD +L + C L+ RWI+ F+ DL + Q EFLA++
Sbjct: 461 PIKPNYDMTLTNACIALSQRWITAKEDDLNSFNATDLKDLSSHQLNEFLAQT 512
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 10 DPNSFSRP-ELAVIEHIDLFLDVNFESKTLSGEAHYVIRRKDPNVTNVEKNTK------- 61
D S + P + +H+ L V+F +TL+G A ++ ++ N+ ++ +TK
Sbjct: 11 DTCSLASPASVCRTKHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKV 70
Query: 62 ----STLSYNIGTHVDNFGSKLDITLP 84
+ Y +G GS ++I+LP
Sbjct: 71 VINGQEVKYALGERQSYKGSPMEISLP 97
>pdb|3CHO|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 2-Amino-N-[4-(Phenylmethoxy)phenyl]-Acetamide
pdb|3CHP|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (3s)-3-Amino-4-Oxo-4-[(4-Phenylmethoxyphenyl)
Amino]butanoic Acid
pdb|3CHQ|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With N5-[4-(Phenylmethoxy)phenyl]-L-Glutamine
pdb|3CHR|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 4-Amino-N-[4-(Phenylmethoxy)phenyl]-Butanamide
pdb|3CHS|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (2s)-2-Amino-5-[[4-[(2s)-2-Hydroxy-2-Phenyl-
Ethoxy]phenyl]amino]-5-Oxo-Pentanoic Acid
Length = 610
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 93/140 (66%), Gaps = 4/140 (2%)
Query: 157 LKTLGEDNPLTKLIVDLKHTHPDDAFSTCPYEKGHTFLFYLEQLLGGPKDFEPWLKKYLA 216
+KT GE +P TKL+VDL PD A+S+ PYEKG LFYLEQLLGGP+ F +LK Y+
Sbjct: 353 VKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVE 412
Query: 217 EFALQSIDTDNFKAHLTSHFAHKPEI-NQIEWDLWLNTTGMPPHIPKYDTSLQDVCNNLA 275
+F+ +SI TD++K L S+F K ++ NQ++W+ WL + G+PP P YD +L + C L+
Sbjct: 413 KFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALS 472
Query: 276 SRWISWNHTKETPDVTFNFT 295
RWI+ KE +FN T
Sbjct: 473 QRWIT---AKEDDLNSFNAT 489
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 357 PFIYGYDTSLQDVCNNLASRWISWNHTKETPFSKQDLAAFTPGHKIEFLAKSSSYIAIPF 416
P YD +L + C L+ RWI+ F+ DL + EFLA++ +P
Sbjct: 455 PIKPNYDMTLTNACIALSQRWITAKEDDLNSFNATDLKDLSSHQLNEFLAQTLQRAPLPL 514
Query: 417 IYGYDTSLQDVCN 429
G+ +Q+V N
Sbjct: 515 --GHIKRMQEVYN 525
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 415 PFIYGYDTSLQDVCNDLASRWISWNHTKETPFSKQDLAAFTPGQKIEFLAKS 466
P YD +L + C L+ RWI+ F+ DL + Q EFLA++
Sbjct: 455 PIKPNYDMTLTNACIALSQRWITAKEDDLNSFNATDLKDLSSHQLNEFLAQT 506
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 10 DPNSFSRP-ELAVIEHIDLFLDVNFESKTLSGEAHYVIRRKDPNVTNVEKNTK------- 61
D S + P + +H+ L V+F +TL+G A ++ ++ N+ ++ +TK
Sbjct: 5 DTCSLASPASVCRTKHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKV 64
Query: 62 ----STLSYNIGTHVDNFGSKLDITLP 84
+ Y +G GS ++I+LP
Sbjct: 65 VINGQEVKYALGERQSYKGSPMEISLP 91
>pdb|1GW6|A Chain A, Structure Of Leukotriene A4 Hydrolase D375n Mutant
Length = 610
Score = 128 bits (321), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 93/140 (66%), Gaps = 4/140 (2%)
Query: 157 LKTLGEDNPLTKLIVDLKHTHPDDAFSTCPYEKGHTFLFYLEQLLGGPKDFEPWLKKYLA 216
+KT GE +P TKL+VDL P+ A+S+ PYEKG LFYLEQLLGGP+ F +LK Y+
Sbjct: 353 VKTFGETHPFTKLVVDLTDIDPNVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVE 412
Query: 217 EFALQSIDTDNFKAHLTSHFAHKPEI-NQIEWDLWLNTTGMPPHIPKYDTSLQDVCNNLA 275
+F+ +SI TD++K L S+F K ++ NQ++W+ WL + G+PP P YD +L + C L+
Sbjct: 413 KFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALS 472
Query: 276 SRWISWNHTKETPDVTFNFT 295
RWI+ KE +FN T
Sbjct: 473 QRWIT---AKEDDLNSFNAT 489
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 357 PFIYGYDTSLQDVCNNLASRWISWNHTKETPFSKQDLAAFTPGHKIEFLAKSSSYIAIPF 416
P YD +L + C L+ RWI+ F+ DL + EFLA++ +P
Sbjct: 455 PIKPNYDMTLTNACIALSQRWITAKEDDLNSFNATDLKDLSSHQLNEFLAQTLQRAPLPL 514
Query: 417 IYGYDTSLQDVCN 429
G+ +Q+V N
Sbjct: 515 --GHIKRMQEVYN 525
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 415 PFIYGYDTSLQDVCNDLASRWISWNHTKETPFSKQDLAAFTPGQKIEFLAKS 466
P YD +L + C L+ RWI+ F+ DL + Q EFLA++
Sbjct: 455 PIKPNYDMTLTNACIALSQRWITAKEDDLNSFNATDLKDLSSHQLNEFLAQT 506
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 10 DPNSFSRP-ELAVIEHIDLFLDVNFESKTLSGEAHYVIRRKDPNVTNVEKNTK------- 61
D S + P + +H+ L V+F +TL+G A ++ ++ N+ ++ +TK
Sbjct: 5 DTCSLASPASVCRTKHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKV 64
Query: 62 ----STLSYNIGTHVDNFGSKLDITLP 84
+ Y +G GS ++I+LP
Sbjct: 65 VINGQEVKYALGERQSYKGSPMEISLP 91
>pdb|2XQ0|A Chain A, Structure Of Yeast Lta4 Hydrolase In Complex With Bestatin
Length = 632
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 72/122 (59%), Gaps = 3/122 (2%)
Query: 175 HTHPDDAFSTCPYEKGHTFLFYLEQLLGGPKDFEPWLKKYLAEFALQSIDTDNFKAHLTS 234
+T PDDAFST PYEKG LF+LE +LGG +F+P+++ Y +FA +S+DT F L
Sbjct: 378 NTDPDDAFSTVPYEKGFNLLFHLETILGGKAEFDPFIRHYFKKFAKKSLDTFQFLDTLYE 437
Query: 235 HFAHKPEI-NQIEWDLWLNTTGMPPHIPKYDTSLQDVCNNLASRWISW-NHTKETPDVTF 292
+ K EI + ++W+ WL GMPP P + T+L D LA +W+ H K T D
Sbjct: 438 FYPEKKEILDSVDWETWLYKPGMPPR-PHFITALADNVYQLADKWVEMAQHLKTTEDFRS 496
Query: 293 NF 294
F
Sbjct: 497 EF 498
>pdb|2XPY|A Chain A, Structure Of Native Leukotriene A4 Hydrolase From
Saccharomyces Cerevisiae
pdb|2XPZ|A Chain A, Structure Of Native Yeast Lta4 Hydrolase
Length = 632
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 72/122 (59%), Gaps = 3/122 (2%)
Query: 175 HTHPDDAFSTCPYEKGHTFLFYLEQLLGGPKDFEPWLKKYLAEFALQSIDTDNFKAHLTS 234
+T PDDAFST PYEKG LF+LE +LGG +F+P+++ Y +FA +S+DT F L
Sbjct: 378 NTDPDDAFSTVPYEKGFNLLFHLETILGGKAEFDPFIRHYFKKFAKKSLDTFQFLDTLYE 437
Query: 235 HFAHKPEI-NQIEWDLWLNTTGMPPHIPKYDTSLQDVCNNLASRWISW-NHTKETPDVTF 292
+ K EI + ++W+ WL GMPP P + T+L D LA +W+ H K T D
Sbjct: 438 FYPEKKEILDSVDWETWLYKPGMPPR-PHFITALADNVYQLADKWVEMAQHLKTTEDFRS 496
Query: 293 NF 294
F
Sbjct: 497 EF 498
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|B Chain B, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|C Chain C, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|D Chain D, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
Length = 605
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 58/100 (58%), Gaps = 7/100 (7%)
Query: 167 TKLIVDLKHTHPDDAFSTCPYEKGHTFLFYLEQLLGGPKDFEPWLKKYLAEFALQSIDTD 226
T+L +DLK PDDAFS PY KG FL YLE+ G + F+ ++ +Y A QS+ TD
Sbjct: 366 TQLYIDLKGRDPDDAFSGVPYVKGQLFLMYLEEKFGRER-FDAFVLEYFDSHAFQSLGTD 424
Query: 227 NF----KAHLTSHFAHKPEINQIEWDLWLNTTGMPPHIPK 262
NF KA+LT + + N+I + W+ G+P + P+
Sbjct: 425 NFVKYLKANLTDKYPNIVSDNEI--NEWIFKAGLPSYAPQ 462
>pdb|1RAL|A Chain A, Three-Dimensional Structure Of Rat Liver 3alpha-
Hydroxysteroid(Slash)dihydrodiol Dehydrogenase: A Member
Of The Aldo-Keto Reductase Superfamily
Length = 308
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 221 QSIDTDNFKAHLTSHFAHKPEI------NQIEWDLWLNTTGMPPHIPKYDTSLQDVCNNL 274
+SI NF +KP + NQ+E L+LN + M + D L C
Sbjct: 161 KSIGVSNFNCRQLERILNKPGLKYKPVCNQVECHLYLNQSKMLDYCKSKDIILVSYCTLG 220
Query: 275 ASRWISWNHTK 285
+SR +W K
Sbjct: 221 SSRDKTWVDQK 231
>pdb|1LWI|A Chain A, 3-Alpha-HydroxysteroidDIHYDRODIOL DEHYDROGENASE FROM
Rattus Norvegicus
pdb|1LWI|B Chain B, 3-Alpha-HydroxysteroidDIHYDRODIOL DEHYDROGENASE FROM
Rattus Norvegicus
Length = 322
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 221 QSIDTDNFKAHLTSHFAHKPEI------NQIEWDLWLNTTGMPPHIPKYDTSLQDVCNNL 274
+SI NF +KP + NQ+E L+LN + M + D L C
Sbjct: 161 KSIGVSNFNCRQLERILNKPGLKYKPVCNQVECHLYLNQSKMLDYCKSKDIILVSYCTLG 220
Query: 275 ASRWISWNHTK 285
+SR +W K
Sbjct: 221 SSRDKTWVDQK 231
>pdb|1AFS|A Chain A, Recombinant Rat Liver 3-Alpha-Hydroxysteroid Dehydrogenase
(3-Alpha-Hsd) Complexed With Nadp And Testosterone
pdb|1AFS|B Chain B, Recombinant Rat Liver 3-Alpha-Hydroxysteroid Dehydrogenase
(3-Alpha-Hsd) Complexed With Nadp And Testosterone
Length = 323
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 221 QSIDTDNFKAHLTSHFAHKPEI------NQIEWDLWLNTTGMPPHIPKYDTSLQDVCNNL 274
+SI NF +KP + NQ+E L+LN + M + D L C
Sbjct: 161 KSIGVSNFNCRQLERILNKPGLKYKPVCNQVECHLYLNQSKMLDYCKSKDIILVSYCTLG 220
Query: 275 ASRWISWNHTK 285
+SR +W K
Sbjct: 221 SSRDKTWVDQK 231
>pdb|3LHX|A Chain A, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
pdb|3LHX|B Chain B, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
Length = 319
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 142 YVIRRKDPNVTNVILLKTLGEDNPLTKLIVDLKHTHPDDAFSTCPYEKGHTFLFYLEQLL 201
Y+ R+ DP V + LG D+ ++ +D H D T E L+Y+E
Sbjct: 38 YIARQVDPAALTVHYVTALGTDS-FSQQXLDAWHGENVDTSLTQRXENRLPGLYYIETDS 96
Query: 202 GGPKDFEPWLKKYLAEFALQS 222
G + F W + A+F L S
Sbjct: 97 TGERTFYYWRNEAAAKFWLAS 117
>pdb|1S7U|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7U|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7U|G Chain G, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7U|J Chain J, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7V|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7V|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7W|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7W|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7W|G Chain G, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7W|J Chain J, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7X|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7X|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7X|G Chain G, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7X|J Chain J, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|3QUK|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4a)
pdb|3QUK|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4a)
pdb|3QUL|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4s)
pdb|3QUL|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4s)
pdb|3QUL|G Chain G, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4s)
pdb|3QUL|J Chain J, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4s)
pdb|3TBS|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex The With
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p,Y4a)
pdb|3TBS|D Chain D, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex The With
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p,Y4a)
pdb|3TBT|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4s)
pdb|3TBT|D Chain D, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4s)
pdb|3TBT|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4s)
pdb|3TBT|J Chain J, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4s)
pdb|3TBV|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g,V3p,Y4a)
pdb|3TBV|C Chain C, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g,V3p,Y4a)
pdb|3TBV|E Chain E, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g,V3p,Y4a)
pdb|3TBV|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g,V3p,Y4a)
pdb|3TBW|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g, V3p, Y4s)
pdb|3TBW|C Chain C, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g, V3p, Y4s)
pdb|3TBW|E Chain E, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g, V3p, Y4s)
pdb|3TBW|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g, V3p, Y4s)
pdb|3TBX|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand V3p
pdb|3TBY|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4f)
pdb|3TBY|D Chain D, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4f)
pdb|3TBY|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4f)
pdb|3TBY|J Chain J, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4f)
Length = 338
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 210 WLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEINQIEWDL 249
WL +YL + TD+ KAH+T H K E+ W L
Sbjct: 167 WLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWAL 206
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
pdb|3KTT|B Chain B, Atomic Model Of Bovine Tric Cct2(Beta) Subunit Derived
From A 4.0 Angstrom Cryo-Em Map
pdb|4A0O|A Chain A, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|B Chain B, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|C Chain C, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|D Chain D, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|E Chain E, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|F Chain F, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|G Chain G, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|H Chain H, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|I Chain I, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|J Chain J, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|K Chain K, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|L Chain L, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|M Chain M, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|N Chain N, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|O Chain O, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|P Chain P, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0V|A Chain A, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|B Chain B, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|C Chain C, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|D Chain D, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|E Chain E, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|F Chain F, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|G Chain G, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|H Chain H, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|I Chain I, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|J Chain J, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|K Chain K, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|L Chain L, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|M Chain M, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|N Chain N, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|O Chain O, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|P Chain P, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0W|A Chain A, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|B Chain B, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|C Chain C, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|D Chain D, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|E Chain E, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|F Chain F, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|G Chain G, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|H Chain H, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|I Chain I, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|J Chain J, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|K Chain K, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|L Chain L, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|M Chain M, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|N Chain N, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|O Chain O, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|P Chain P, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A13|A Chain A, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|B Chain B, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|C Chain C, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|D Chain D, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|E Chain E, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|F Chain F, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|G Chain G, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|H Chain H, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|I Chain I, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|J Chain J, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|K Chain K, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|L Chain L, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|M Chain M, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|N Chain N, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|O Chain O, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|P Chain P, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
Length = 513
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 151 VTN--VILLKTLGEDNPLTKLIVDLKHTHPDD 180
VTN +LK +G DNP K++VD+ D+
Sbjct: 50 VTNDGATILKNIGVDNPAAKVLVDMSRVQDDE 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,342,359
Number of Sequences: 62578
Number of extensions: 722490
Number of successful extensions: 1882
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1793
Number of HSP's gapped (non-prelim): 83
length of query: 482
length of database: 14,973,337
effective HSP length: 103
effective length of query: 379
effective length of database: 8,527,803
effective search space: 3232037337
effective search space used: 3232037337
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)