Query psy6165
Match_columns 482
No_of_seqs 420 out of 1335
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 19:19:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1047|consensus 100.0 1.6E-76 3.5E-81 619.5 20.8 386 9-453 5-608 (613)
2 TIGR02411 leuko_A4_hydro leuko 100.0 2.6E-65 5.6E-70 559.4 27.1 384 10-453 1-599 (601)
3 PRK14015 pepN aminopeptidase N 99.9 8.1E-27 1.8E-31 264.6 16.8 145 113-264 299-458 (875)
4 TIGR02414 pepN_proteo aminopep 99.9 4.7E-25 1E-29 249.9 16.0 145 112-263 285-444 (863)
5 KOG1046|consensus 99.9 1.6E-24 3.5E-29 246.9 7.5 188 64-266 276-491 (882)
6 TIGR02412 pepN_strep_liv amino 99.9 1.5E-24 3.3E-29 246.2 7.0 145 112-264 289-452 (831)
7 COG0308 PepN Aminopeptidase N 99.9 2.5E-23 5.3E-28 236.9 8.8 147 113-265 310-474 (859)
8 PF09127 Leuk-A4-hydro_C: Leuk 99.8 9.8E-23 2.1E-27 186.1 0.1 131 307-453 1-141 (143)
9 PF01433 Peptidase_M1: Peptida 99.3 2.4E-12 5.1E-17 133.3 5.5 75 112-190 297-390 (390)
10 KOG1047|consensus 98.8 2.4E-09 5.3E-14 114.6 5.2 78 401-481 445-532 (613)
11 PF09127 Leuk-A4-hydro_C: Leuk 98.4 1.4E-07 3E-12 86.5 3.6 58 423-481 1-66 (143)
12 TIGR02411 leuko_A4_hydro leuko 98.4 4E-07 8.7E-12 101.1 6.3 78 401-481 436-524 (601)
13 PF13485 Peptidase_MA_2: Pepti 98.2 6.3E-07 1.4E-11 77.3 2.4 99 109-214 24-128 (128)
14 KOG1932|consensus 96.7 0.02 4.3E-07 66.7 13.8 46 6-53 13-59 (1180)
15 COG3975 Predicted protease wit 88.8 3.3 7.1E-05 45.7 10.6 78 181-261 349-434 (558)
16 PF10460 Peptidase_M30: Peptid 55.8 65 0.0014 34.4 9.1 130 110-254 139-285 (366)
17 PF07607 DUF1570: Protein of u 53.3 4.8 0.00011 36.5 0.3 32 112-146 3-41 (128)
18 COG0308 PepN Aminopeptidase N 39.5 47 0.001 39.2 5.5 31 17-48 20-50 (859)
19 PF04450 BSP: Peptidase of pla 33.2 1.2E+02 0.0025 29.7 6.3 93 111-233 97-194 (205)
20 PF08794 Lipoprot_C: Lipoprote 28.3 52 0.0011 31.0 2.8 18 26-43 65-82 (155)
21 PF03272 Enhancin: Viral enhan 22.7 37 0.0008 39.7 0.9 89 114-217 240-345 (775)
22 PF09836 DUF2063: Uncharacteri 20.7 53 0.0012 27.5 1.3 34 198-232 56-89 (94)
No 1
>KOG1047|consensus
Probab=100.00 E-value=1.6e-76 Score=619.47 Aligned_cols=386 Identities=31% Similarity=0.522 Sum_probs=336.4
Q ss_pred CCCCCCCCCCccEeeeeeeeeecccCCceEEEEEEEEEeecC-----------CCcceeecCCCceeeeecCCCCcCCCc
Q psy6165 9 GDPNSFSRPELAVIEHIDLFLDVNFESKTLSGEAHYVIRRKD-----------PNVTNVEKNTKSTLSYNIGTHVDNFGS 77 (482)
Q Consensus 9 ~D~hS~an~~~v~v~Hl~Ldl~vDF~~k~l~G~a~l~l~~~~-----------~~~~~V~~~~~~~l~f~l~~~d~~lG~ 77 (482)
+||||+||++++.|.|++|+|.|||+++.|+|+|+|+|.-.. ++|++|+. +|.+.+|.++..++++|+
T Consensus 5 ~Dp~s~sn~~~~~~~H~~l~~~vdF~~~~i~G~a~l~l~~~~~~~~~~LDt~~l~i~~v~i-~~~~~~~~i~~~~~~~g~ 83 (613)
T KOG1047|consen 5 RDPSSASNYRDVTVLHLALNLRVDFEKRGISGSALLTLRLLEDNLKLVLDTRDLSIRNVTI-NGEEPPFRIGFRQPFLGS 83 (613)
T ss_pred CCcccccChhhhhhheeeeeEEEecccceecceEEEEEEeccCCceeEeeecceeeEEeec-cCCCCCCccCcccCCCCC
Confidence 399999999999999999999999999999999999988443 33346664 558999999999999999
Q ss_pred ceEEeCCCCCC------------------cccee----------------------------E-----------------
Q psy6165 78 KLDITLPPKDK------------------DHNRW----------------------------C----------------- 94 (482)
Q Consensus 78 ~L~I~lp~~~~------------------~~~~~----------------------------~----------------- 94 (482)
++.+-+|.... +++|| |
T Consensus 84 ~~~~~l~~~~~~a~~~~~l~i~y~Ts~~atalqwL~peQT~gk~~PylfsQCQAIhaRsi~PC~DTPavK~ty~a~v~vp 163 (613)
T KOG1047|consen 84 GQKLVLPAPSSKAGERLQLLIWYETSPSATALQWLNPEQTSGKKHPYLFSQCQAIHARSIFPCQDTPAVKSTYTAEVEVP 163 (613)
T ss_pred ceEEEeccccccccCceEEEEEEeccCCcceeEEeccccccCCCCCchHHHHHHhHHheeccccCCCcceeEEEEEEEcC
Confidence 98666653222 77888 0
Q ss_pred --------------------------------------------------------------------------------
Q psy6165 95 -------------------------------------------------------------------------------- 94 (482)
Q Consensus 95 -------------------------------------------------------------------------------- 94 (482)
T Consensus 164 ~~l~a~mSai~~~~~~~~~~~~~f~f~q~~pIP~YLiai~~G~L~s~eIgpRs~VwaEp~~~~a~~~ef~~~~e~~L~~A 243 (613)
T KOG1047|consen 164 MGLTALMSAIPAGEKPGSNGRAIFRFKQEVPIPSYLIAIAVGDLESREIGPRSRVWAEPCLLDACQEEFAGETEDFLKAA 243 (613)
T ss_pred CcceeeeeccccccCCCCCCcceEEEEeccCchhhhHHHhhccccccccCCccceecchhhhHHHHHHHHhhhHHHHHHH
Confidence
Q ss_pred ------------------------------EEEEecCCCCCCCCcccchhcchhhhhc---ccccccCcccccccc-hHH
Q psy6165 95 ------------------------------LVVKTLPSNKEGDGFNFPRLIELAVIEH---IDLFLDVNFESKTLS-GEA 140 (482)
Q Consensus 95 ------------------------------~t~~~~~S~~~~d~~~~~~i~H~AEiaH---GNlVT~a~W~d~WLn-GfA 140 (482)
+|| ++|+.+++|++++.+||| |||| ||+||+++|++.||| ||+
T Consensus 244 e~l~GpY~WgryDllvlPpSFP~gGMENPcltF-~TpTllaGDrsl~~vIaH--EIAHSWtGNlVTN~sWehfWLNEGfT 320 (613)
T KOG1047|consen 244 EKLFGPYVWGRYDLLVLPPSFPFGGMENPCLTF-VTPTLLAGDRSLVDVIAH--EIAHSWTGNLVTNASWEHFWLNEGFT 320 (613)
T ss_pred HHHcCCcccccceEEEecCCCCcccccCcceee-ecchhhcCCcchhhHHHH--HhhhhhcccccccCccchhhhcccch
Confidence 333 444567777777799999 9999 999999999999999 999
Q ss_pred HHHHHHHc---------------CCCchHHHHHHhccCCCCceeeccCCCCCCCCCCCCCcCchHHHHHHHHHHhcCCcc
Q psy6165 141 HYVIRRKD---------------PNVTNVILLKTLGEDNPLTKLIVDLKHTHPDDAFSTCPYEKGHTFLFYLEQLLGGPK 205 (482)
Q Consensus 141 ty~~~~~~---------------g~~~l~~~~~~~g~d~~~t~Lv~~l~g~dPddaFs~IpYeKGa~~L~mLe~~lGg~e 205 (482)
+|+++.|. ||..++..++.+|+++++++|++++++.|||++||+||||||++||++||+++||++
T Consensus 321 vylErrI~g~~~g~~~~~f~a~~gw~~L~~~~d~~g~~~~~tkLv~kl~~~dPDdafs~VpYeKG~~ll~~Le~~lG~~~ 400 (613)
T KOG1047|consen 321 VYLERRIVGRLYGEAYRQFEALIGWRELRPSMDLFGETSEFTKLVVKLENVDPDDAFSQVPYEKGFALLFYLEQLLGDPT 400 (613)
T ss_pred hhhhhhhhhhhcchhHHHHHHhcChhhhhhHHHhcCCCcccchhhhhccCCChHHhhhcCchhhhhHHHHHHHHHhCChh
Confidence 99987654 577788999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC--CCc-chhhHhhhhhCCCCCCCCcccCCchHHHHHHHHHHHhcCC
Q psy6165 206 DFEPWLKKYLAEFALQSIDTDNFKAHLTSHFAHK--PEI-NQIEWDLWLNTTGMPPHIPKYDTSLQDVCNNLASRWISWN 282 (482)
Q Consensus 206 ~F~~fLr~Yl~~f~~qs~~t~Df~~~l~~~~~~~--~~~-~~i~~d~Wl~~pG~P~v~~~~dt~l~~~~~~La~rW~~~~ 282 (482)
.|++|||.|+++|+|++|+++||+++|.++|++. .++ .+++|+.|+++|||||++|+++++++++|++|+++|+..+
T Consensus 401 ~Fd~FLr~Yv~kfa~ksI~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~~p~~~~sL~~~~~~La~~W~~~~ 480 (613)
T KOG1047|consen 401 RFDPFLRAYVHKFAFKSILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPPKPNFDSSLARPVEALAQKWTAVE 480 (613)
T ss_pred hHHHHHHHHHHHhccceecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCCCCCccchHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999984 345 7889999999999999999999999999999999999854
Q ss_pred CCCCCCccccccchhhhcccccCCcchhhhhhhhhhcccccCCCCCCCChhhhcCCCchhHHHHHHHhhcCCCCC-----
Q psy6165 283 HTKETPDVTFNFTFQYFKACGYDTSLQDVCNDLANRWISWNHTKETPFSKQDLAAFTPGHKIEFLAKSSSYIAIP----- 357 (482)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~q~~~fl~~l~~~~~l~----- 357 (482)
... .....+++.|+++|++.|+++||++|++..+||
T Consensus 481 ~~~---------------------------------------~~~~~~~a~d~~~~~~~Ql~lfL~~l~q~~~lp~~~~~ 521 (613)
T KOG1047|consen 481 ELD---------------------------------------DAASEFSAEDIEKWSPDQLVLFLDKLLQSKPLPPGTVK 521 (613)
T ss_pred ccc---------------------------------------ccccccchhhHHhcChHhHHHHHHHHHhcCCCChHHHH
Confidence 311 123578999999999999999999999988765
Q ss_pred ---cccccccccccccchHHHHHHHHhhc-cCCCCccccccccCCchhhhhccccCCccCCCcc-ccccchHH--HHHHH
Q psy6165 358 ---FIYGYDTSLQDVCNNLASRWISWNHT-KETPFSKQDLAAFTPGHKIEFLAKSSSYIAIPFI-YGYDTSLQ--DVCND 430 (482)
Q Consensus 358 ---~~y~~~~~~~~~~~e~~~rw~~~~~~-~~~~~~~~~~~~~~~~~~~~wL~~~G~~g~mp~~-P~ydtsL~--~~~~~ 430 (482)
.+|++..++| +||++||++++++ |.++ +|.. +.+||++.| ||+++ |.|+ .|+ .+.++
T Consensus 522 aL~~~Y~l~~skN---AEvr~rw~~L~vksk~~~-------~~~~--v~~fl~~~g---rmkf~rPlyr-~L~~~~~~~~ 585 (613)
T KOG1047|consen 522 ALQDTYSLLQSKN---AEVRFRWLQLIVKSKWQE-------AYKK--VLEFLGEQG---RMKFTRPLYR-DLAGGEAAKQ 585 (613)
T ss_pred HHHHHhhhhhccc---hHHHHHHHHHHHHhhhHH-------HHHH--HHHHHHhcc---ceeeehHHHH-HhhcchHHHH
Confidence 6999998999 8999999999999 5333 3433 889999998 99998 5555 888 78999
Q ss_pred HHHHHHhhhcCCCCCCCHHHhhc
Q psy6165 431 LASRWISWNHTKETPFSKQDLAA 453 (482)
Q Consensus 431 LA~kwf~~~~~~~~~~s~~dv~~ 453 (482)
||.++|++.++.|||++++.|++
T Consensus 586 ~A~~~F~~~k~qmhpi~~~~V~~ 608 (613)
T KOG1047|consen 586 LAIETFAKTKSQMHPICANVVQK 608 (613)
T ss_pred HHHHHHHHhHhhhCHHHHHHHHH
Confidence 99999999999999998887753
No 2
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=2.6e-65 Score=559.40 Aligned_cols=384 Identities=34% Similarity=0.557 Sum_probs=313.5
Q ss_pred CCCCCCCCCccEeeeeeeeeecccCCceEEEEEEEEEeecCCCc------------ceeecCCCceeeeecCCCCcCCCc
Q psy6165 10 DPNSFSRPELAVIEHIDLFLDVNFESKTLSGEAHYVIRRKDPNV------------TNVEKNTKSTLSYNIGTHVDNFGS 77 (482)
Q Consensus 10 D~hS~an~~~v~v~Hl~Ldl~vDF~~k~l~G~a~l~l~~~~~~~------------~~V~~~~~~~l~f~l~~~d~~lG~ 77 (482)
|+||||||++++++|.+|+|+|||++++++|+|+++|+...+.. .+|.. +|++++|++++..+..|+
T Consensus 1 d~~s~sn~~~~~~~hy~L~L~vd~~~~~~~G~v~i~l~~~~~~~~~i~Ld~~~L~I~~V~v-~g~~~~~~~~~~~~~~g~ 79 (601)
T TIGR02411 1 DPSSLSNYKDFRTSHTDLNLSVDFTKRKLSGSVTFTLQSLTDNLNSLVLDTSYLDIQKVTI-NGLPADFAIGERKEPLGS 79 (601)
T ss_pred CCccccCCCCcEEEEEEEEEEEeecCCEEEEEEEEEEEECCCCCcEEEEECCCCEEEEEEE-CCcccceEeccccCCCCC
Confidence 89999999999999999999999999999999999998754332 35554 458899999998899999
Q ss_pred ceEEeCCCCCC-----------------cccee----------------------------E-----------EEEEecC
Q psy6165 78 KLDITLPPKDK-----------------DHNRW----------------------------C-----------LVVKTLP 101 (482)
Q Consensus 78 ~L~I~lp~~~~-----------------~~~~~----------------------------~-----------~t~~~~~ 101 (482)
+|+|.||.... .|++| | +++++|-
T Consensus 80 ~L~I~l~~~l~~g~~~~l~I~Y~~~~~~~gl~~~~~~~t~g~~~py~~Tq~qp~~AR~~fPC~D~P~~Katf~~~I~~P~ 159 (601)
T TIGR02411 80 PLTISLPIATSKNKELVLNISFSTTPKCTALQWLTPEQTSGKKHPYLFSQCQAIHARSVIPCQDTPSVKSTYTAEVESPL 159 (601)
T ss_pred eEEEEeCCccCCCceEEEEEEEeecCCCceeEEecccccCCCCCCEEEECCcccchheeeeecCCcccceEEEEEEeeCc
Confidence 99999984321 46666 2 2222110
Q ss_pred ----C---------------------------------------------------------------------------
Q psy6165 102 ----S--------------------------------------------------------------------------- 102 (482)
Q Consensus 102 ----S--------------------------------------------------------------------------- 102 (482)
|
T Consensus 160 ~av~sg~~~~~~~~~~~~~~F~~t~pmptYLia~avG~~~~~~~g~~~~v~~~p~~~~~~~~~~~~~~~~~l~~~e~~~~ 239 (601)
T TIGR02411 160 PVLMSGIPDGETSNDPGKYLFKQKVPIPAYLIALASGDLASAPIGPRSSVYSEPEQLEKCQYEFEHDTENFIKTAEDLIF 239 (601)
T ss_pred ceeccCCccccccCCCceEEEEeCCCcchhhheeeeccceecccCCceEEEccchhHHHHHHHHHHhHHHHHHHHHHhCC
Confidence 0
Q ss_pred --------------------------------CCCCCCcccchhcchhhhhc---ccccccCcccccccc-hHHHHHHHH
Q psy6165 103 --------------------------------NKEGDGFNFPRLIELAVIEH---IDLFLDVNFESKTLS-GEAHYVIRR 146 (482)
Q Consensus 103 --------------------------------~~~~d~~~~~~i~H~AEiaH---GNlVT~a~W~d~WLn-GfAty~~~~ 146 (482)
.+.+|+....+|+| |+|| ||+||++||+|+||| |||+|+++.
T Consensus 240 pYp~~k~d~vvlpp~f~~GgMEN~~ltf~~~~ll~~d~s~~~viaH--ElAHqWfGNlVT~~~W~d~WLnEGfaty~e~~ 317 (601)
T TIGR02411 240 PYEWGQYDLLVLPPSFPYGGMENPNLTFATPTLIAGDRSNVDVIAH--ELAHSWSGNLVTNCSWEHFWLNEGWTVYLERR 317 (601)
T ss_pred CCcCccceEEEecCcccccccccccceeeccccccCChhhhhhHHH--HHHhhccCceeecCCchHHHHHhhHHHHHHHH
Confidence 00001111146999 9999 999999999999999 999999876
Q ss_pred HcC---------------CCchHHHHHHhccCCCCceeeccCCCCCCCCCCCCCcCchHHHHHHHHHHhcCCccchHHHH
Q psy6165 147 KDP---------------NVTNVILLKTLGEDNPLTKLIVDLKHTHPDDAFSTCPYEKGHTFLFYLEQLLGGPKDFEPWL 211 (482)
Q Consensus 147 ~~g---------------~~~l~~~~~~~g~d~~~t~Lv~~l~g~dPddaFs~IpYeKGa~~L~mLe~~lGg~e~F~~fL 211 (482)
+.+ +..+...++.++.+++++.++++.++.+|+++|+.|+|+||+++|+|||++|||+++|+++|
T Consensus 318 ~~~~~~~e~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~dp~~~f~~i~Y~KGa~~L~mL~~~lG~~~~F~~~l 397 (601)
T TIGR02411 318 IVGRLYGEKTRHFSALIGWGELQESVKTLGEDPEYTKLVVDLKDNDPDDAFSSVPYEKGFNFLFYLEQLLGGPAVFDPFL 397 (601)
T ss_pred HHHHhcCcHHHHHHHHHhHHHHHHHHHhhcCCCCCCcccccCCCCChhhhccccchhhHHHHHHHHHHHhCCHHHHHHHH
Confidence 543 12223445567778899999988877799999999999999999999999999789999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhhcCCC--C-cchhhHhhhhhCCCCCCCCcccCCchHHHHHHHHHHHhcCCCCCCCC
Q psy6165 212 KKYLAEFALQSIDTDNFKAHLTSHFAHKP--E-INQIEWDLWLNTTGMPPHIPKYDTSLQDVCNNLASRWISWNHTKETP 288 (482)
Q Consensus 212 r~Yl~~f~~qs~~t~Df~~~l~~~~~~~~--~-~~~i~~d~Wl~~pG~P~v~~~~dt~l~~~~~~La~rW~~~~~~~~~~ 288 (482)
|.|+++|+|++++++||+++|.+++.+.. . +..++|++|+++||+|+++++++++++++|++|+++|+......
T Consensus 398 r~Yl~~~~~~s~~t~df~~~l~~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~~~~~~~~~~~~~l~~~w~~~~~~~--- 474 (601)
T TIGR02411 398 KHYFKKFAYKSLDTYQFKDALYEYFKDTGKVDKLNAVDWDTWLYSPGLPPVKPNFDTTLADECYALASRWVDAAKDD--- 474 (601)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhhccccchhhhhhHHHHhcCCCCCCcCCCCCchHHHHHHHHHHHHHhcCCCC---
Confidence 99999999999999999999999885432 1 23466999999999999999999999999999999998632111
Q ss_pred ccccccchhhhcccccCCcchhhhhhhhhhcccccCCCCCCCChhhhcCCCchhHHHHHHHhhcCC---CCC--------
Q psy6165 289 DVTFNFTFQYFKACGYDTSLQDVCNDLANRWISWNHTKETPFSKQDLAAFTPGHKIEFLAKSSSYI---AIP-------- 357 (482)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~q~~~fl~~l~~~~---~l~-------- 357 (482)
..++++.|+++|+++|+++||++|++.. +|+
T Consensus 475 --------------------------------------~~~~~~~~~~~~~~~q~~~fl~~l~~~~~~~~l~~~~~~~l~ 516 (601)
T TIGR02411 475 --------------------------------------LSSFNAKDIKDFSSHQLVLFLETLTERKGIVSLPEGHIKRMG 516 (601)
T ss_pred --------------------------------------CCCcchhhhhhCCHHHHHHHHHHHHhhccCCCCCHHHHHHHH
Confidence 1344568999999999999999999852 444
Q ss_pred cccccccccccccchHHHHHHHHhhc-cCCCCccccccccCCchhhhhccccCCccCCCcc-ccccchHHHH-HHHHHHH
Q psy6165 358 FIYGYDTSLQDVCNNLASRWISWNHT-KETPFSKQDLAAFTPGHKIEFLAKSSSYIAIPFI-YGYDTSLQDV-CNDLASR 434 (482)
Q Consensus 358 ~~y~~~~~~~~~~~e~~~rw~~~~~~-~~~~~~~~~~~~~~~~~~~~wL~~~G~~g~mp~~-P~ydtsL~~~-~~~LA~k 434 (482)
.+|+|+++.| +||++|||+++|+ ++++ ++.. +++||++.| ||+++ |.|+ .|.+. .+++|++
T Consensus 517 ~~y~~~~~~n---~ei~~~w~~~~~~~~~~~-------~~~~--~~~~l~~~g---r~k~~~p~y~-~l~~~~~~~~a~~ 580 (601)
T TIGR02411 517 DIYNFAASKN---AEVRFRWNRLAIQAKLED-------EYPL--IAEWLGTVG---RMKFVRPGYR-LLNAFVDKDFAIR 580 (601)
T ss_pred hhcCccCCCc---hhhhHHHHHHHHhcCCch-------hHHH--HHHHHHhcC---CcEEehHHHH-HHHhccCHHHHHH
Confidence 6999999999 8999999999999 4333 4433 889999998 99997 9998 67775 7899999
Q ss_pred HHhhhcCCCCCCCHHHhhc
Q psy6165 435 WISWNHTKETPFSKQDLAA 453 (482)
Q Consensus 435 wf~~~~~~~~~~s~~dv~~ 453 (482)
+|++.+.+|||++++.|++
T Consensus 581 ~f~~~~~~yh~~~~~~v~~ 599 (601)
T TIGR02411 581 TFEKFKDSYHPICAMLVEK 599 (601)
T ss_pred HHHHHhhccCHHHHHHHHh
Confidence 9999999999999888764
No 3
>PRK14015 pepN aminopeptidase N; Provisional
Probab=99.94 E-value=8.1e-27 Score=264.65 Aligned_cols=145 Identities=15% Similarity=0.255 Sum_probs=110.4
Q ss_pred hhcchhhhhc---ccccccCcccccccc-hHHHHHHHHHcCCCc---hHHHHH-------HhccC-CCCceeeccCCCCC
Q psy6165 113 RLIELAVIEH---IDLFLDVNFESKTLS-GEAHYVIRRKDPNVT---NVILLK-------TLGED-NPLTKLIVDLKHTH 177 (482)
Q Consensus 113 ~i~H~AEiaH---GNlVT~a~W~d~WLn-GfAty~~~~~~g~~~---l~~~~~-------~~g~d-~~~t~Lv~~l~g~d 177 (482)
+|+| |++| ||+|||+||+++||| |||+|++..+..... .....+ .|..+ .+.+..+..-...+
T Consensus 299 vIaH--ElaHqWFGNlVT~~~W~dLWLnEGFAty~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~~~~a~pi~p~~~~~ 376 (875)
T PRK14015 299 VIAH--EYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADLGSRAVKRIEDVRVLRAAQFAEDAGPMAHPVRPDSYIE 376 (875)
T ss_pred HHHH--HHHHHHHhCcceecchhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccccccCCCCCCcchhh
Confidence 6899 9999 999999999999999 999999766643321 111111 12222 13222111001124
Q ss_pred CCCCCCCCcCchHHHHHHHHHHhcCCccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCCCCcchhhHhhhhhCCCCC
Q psy6165 178 PDDAFSTCPYEKGHTFLFYLEQLLGGPKDFEPWLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEINQIEWDLWLNTTGMP 257 (482)
Q Consensus 178 PddaFs~IpYeKGa~~L~mLe~~lGg~e~F~~fLr~Yl~~f~~qs~~t~Df~~~l~~~~~~~~~~~~i~~d~Wl~~pG~P 257 (482)
+++.|+.++|+||+++|||||.+|| +++|+++||.|+++|+|++++++||++++.++.+. ++ ..|.+|++++|+|
T Consensus 377 i~~~f~~~~Y~KGA~vLrMLr~~lG-de~F~~gLr~Yl~~~~~~~at~~Df~~ale~asg~--DL--~~f~~W~~q~G~P 451 (875)
T PRK14015 377 INNFYTATVYEKGAEVIRMLHTLLG-EEGFRKGMDLYFERHDGQAVTCEDFVAAMEDASGR--DL--SQFRRWYSQAGTP 451 (875)
T ss_pred HHhcccchhhhHHHHHHHHHHHHhC-HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCC--CH--HHHHHHHcCCCCC
Confidence 4568999999999999999999999 99999999999999999999999999999998753 22 2267999999999
Q ss_pred CCCcccC
Q psy6165 258 PHIPKYD 264 (482)
Q Consensus 258 ~v~~~~d 264 (482)
++.+..+
T Consensus 452 ~l~v~~~ 458 (875)
T PRK14015 452 RVTVSDE 458 (875)
T ss_pred eEEEEEE
Confidence 9887543
No 4
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=99.92 E-value=4.7e-25 Score=249.86 Aligned_cols=145 Identities=18% Similarity=0.284 Sum_probs=110.7
Q ss_pred chhcchhhhhc---ccccccCcccccccc-hHHHHHHHHHcCCCc---hHH-----HH--HHhccC-CCCceeeccCCCC
Q psy6165 112 PRLIELAVIEH---IDLFLDVNFESKTLS-GEAHYVIRRKDPNVT---NVI-----LL--KTLGED-NPLTKLIVDLKHT 176 (482)
Q Consensus 112 ~~i~H~AEiaH---GNlVT~a~W~d~WLn-GfAty~~~~~~g~~~---l~~-----~~--~~~g~d-~~~t~Lv~~l~g~ 176 (482)
.+|+| |++| ||+|||+||.++||| |||+|++..+..... ... .+ ..|.+| .+.+..+......
T Consensus 285 ~VIaH--ElaHqWfGNlVT~~~W~~LWLnEGfAty~e~~~~~~~~~~~~~~~~~~~~lr~~~f~~D~~p~~~Pi~~~~~~ 362 (863)
T TIGR02414 285 SVIAH--EYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADMTSRAVKRIEDVRLLRAHQFPEDAGPMAHPVRPESYV 362 (863)
T ss_pred HHHHH--HHHHHHhcceeeecchhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhcccccccCCCCCCcchh
Confidence 36899 9999 999999999999999 999999865543211 110 11 123222 2222222111123
Q ss_pred CCCCCCCCCcCchHHHHHHHHHHhcCCccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCCCCcchhhHhhhhhCCCC
Q psy6165 177 HPDDAFSTCPYEKGHTFLFYLEQLLGGPKDFEPWLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEINQIEWDLWLNTTGM 256 (482)
Q Consensus 177 dPddaFs~IpYeKGa~~L~mLe~~lGg~e~F~~fLr~Yl~~f~~qs~~t~Df~~~l~~~~~~~~~~~~i~~d~Wl~~pG~ 256 (482)
++++.|+.++|+||+++||||+.+|| ++.|+++||.|+++|+|++++++||++.|.+..+. ++ . .|.+|++|+|+
T Consensus 363 ~i~~~y~~i~Y~KGA~vLrML~~~LG-ee~F~~gLr~Yl~r~~~~~at~~Df~~ale~asg~--dL-~-~f~~W~~q~G~ 437 (863)
T TIGR02414 363 EINNFYTATVYEKGAEVIRMLHTLLG-EEGFRKGMDLYFSRHDGQAVTCEDFVAAMEDASGR--DL-N-QFRRWYSQAGT 437 (863)
T ss_pred hHHhccchHHhHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCC--CH-H-HHHHHHcCCCC
Confidence 45678999999999999999999999 89999999999999999999999999999998753 22 2 26799999999
Q ss_pred CCCCccc
Q psy6165 257 PPHIPKY 263 (482)
Q Consensus 257 P~v~~~~ 263 (482)
|.+.+..
T Consensus 438 P~v~v~~ 444 (863)
T TIGR02414 438 PVLEVKE 444 (863)
T ss_pred ceeEEEE
Confidence 9988754
No 5
>KOG1046|consensus
Probab=99.90 E-value=1.6e-24 Score=246.86 Aligned_cols=188 Identities=18% Similarity=0.249 Sum_probs=135.7
Q ss_pred eeeecCCCCcCCCcceEEeCCCC-CCccceeE-EEEEecC------CCCCCCC-cccchhcchhhhhc---ccccccCcc
Q psy6165 64 LSYNIGTHVDNFGSKLDITLPPK-DKDHNRWC-LVVKTLP------SNKEGDG-FNFPRLIELAVIEH---IDLFLDVNF 131 (482)
Q Consensus 64 l~f~l~~~d~~lG~~L~I~lp~~-~~~~~~~~-~t~~~~~------S~~~~d~-~~~~~i~H~AEiaH---GNlVT~a~W 131 (482)
.+|-|.+-|- |.+|.= +...--|+ .|||+.. .++.+++ ....+|+| |+|| ||+|||+||
T Consensus 276 i~yPLpK~D~-------iavPdf~~GAMENwGLvtyre~~lL~~~~~ss~~~k~~va~vIaH--ElAHQWFGNLVTm~wW 346 (882)
T KOG1046|consen 276 IPYPLPKLDL-------VAVPDFSAGAMENWGLVTYRETALLYDPQTSSSSNKQRVAEVIAH--ELAHQWFGNLVTMKWW 346 (882)
T ss_pred CCCCCccccE-------EecCCccccchhcCcceeeeehhhccCCCcCcHHHHHHHHHHHHH--HHHHHHhcCcccHhhh
Confidence 5555555554 667632 22456787 8888666 2444445 34578999 9999 999999999
Q ss_pred cccccc-hHHHHHHHHHcC-CCchH--------H-HHHHhcc-----CCCCceeeccCCCCCCCCCCCCCcCchHHHHHH
Q psy6165 132 ESKTLS-GEAHYVIRRKDP-NVTNV--------I-LLKTLGE-----DNPLTKLIVDLKHTHPDDAFSTCPYEKGHTFLF 195 (482)
Q Consensus 132 ~d~WLn-GfAty~~~~~~g-~~~l~--------~-~~~~~g~-----d~~~t~Lv~~l~g~dPddaFs~IpYeKGa~~L~ 195 (482)
+++||| |||+|+...... ..+.+ . ....+.. .||....+.. ....++.|+.|.|.||+++||
T Consensus 347 ~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~D~l~~shpi~~~v~~--~~ei~e~fd~i~Y~KGasvlR 424 (882)
T KOG1046|consen 347 NDLWLNEGFATYVEYLAVDHLFPEWDIWEQFLLENLERVLSLDALASSHPISVPVES--PSEIDEIFDEISYQKGASVLR 424 (882)
T ss_pred hhhhhcccHHHHHHHHhhccCCcchhhHHHHHHHHHHHHhhhhcccccCCeeeecCC--cchhhhhhhhhhhhHHHHHHH
Confidence 999999 999999876543 11111 1 1112332 2444433321 122346899999999999999
Q ss_pred HHHHhcCCccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCCCCcchhhHhhhhhCCCCCCCCcccCCc
Q psy6165 196 YLEQLLGGPKDFEPWLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEINQIEWDLWLNTTGMPPHIPKYDTS 266 (482)
Q Consensus 196 mLe~~lGg~e~F~~fLr~Yl~~f~~qs~~t~Df~~~l~~~~~~~~~~~~i~~d~Wl~~pG~P~v~~~~dt~ 266 (482)
||+.++| ++.|+++|+.||.+|+|+|++++|||+.|.. +...+ ....|+.|+.|+|+|++.+..+..
T Consensus 425 ML~~~lG-e~~F~~gi~~yL~~~~y~na~~~DLw~~l~~--~~~~~-v~~~M~~Wt~Q~G~Pvv~V~~~~~ 491 (882)
T KOG1046|consen 425 MLESLLG-EEVFRKGLRSYLKKHQYSNAKTEDLWDALEE--GSGLD-VSELMDTWTKQMGYPVVTVERNGD 491 (882)
T ss_pred HHHHHHC-HHHHHHHHHHHHHHhccCCCCchhHHHHHhc--cCCCC-HHHHHhhhhcCCCCceEEEEecCC
Confidence 9999999 8999999999999999999999999999992 11112 244599999999999998865543
No 6
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=99.90 E-value=1.5e-24 Score=246.18 Aligned_cols=145 Identities=19% Similarity=0.248 Sum_probs=111.7
Q ss_pred chhcchhhhhc---ccccccCcccccccc-hHHHHHHHHHcCCC----chHHH------HHHhccC-----CCCceeecc
Q psy6165 112 PRLIELAVIEH---IDLFLDVNFESKTLS-GEAHYVIRRKDPNV----TNVIL------LKTLGED-----NPLTKLIVD 172 (482)
Q Consensus 112 ~~i~H~AEiaH---GNlVT~a~W~d~WLn-GfAty~~~~~~g~~----~l~~~------~~~~g~d-----~~~t~Lv~~ 172 (482)
.+|+| |+|| ||+|||+||+++||| |||+|+++.+.... ..+.. ...|..| +|....+.+
T Consensus 289 ~viaH--ElAHqWFGnlVT~~wW~dlWLnEGFAty~e~~~~~~~~~~~~~~~~f~~~~~~~a~~~D~~~~t~Pi~~~~~~ 366 (831)
T TIGR02412 289 GVILH--EMAHMWFGDLVTMRWWNDLWLNESFAEYMGTLASAEATEYTDAWTTFAAQGKQWAYEADQLPTTHPIVADVAD 366 (831)
T ss_pred HHHHH--HHHHHHhCCEeccccccchhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcccCCCCCccCCCC
Confidence 47999 9999 999999999999999 99999988775421 11111 1112222 333221110
Q ss_pred CCCCCCCCCCCCCcCchHHHHHHHHHHhcCCccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCCCCcchhhHhhhhh
Q psy6165 173 LKHTHPDDAFSTCPYEKGHTFLFYLEQLLGGPKDFEPWLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEINQIEWDLWLN 252 (482)
Q Consensus 173 l~g~dPddaFs~IpYeKGa~~L~mLe~~lGg~e~F~~fLr~Yl~~f~~qs~~t~Df~~~l~~~~~~~~~~~~i~~d~Wl~ 252 (482)
..+....|+.|+|.||+++|+||++.|| +++|+++||.|+++|+|++++++||++.|.+..+. ++ ...|++|++
T Consensus 367 --~~~~~~~fd~isY~KGa~vL~mL~~~lG-ee~F~~glr~Yl~~~~~~nat~~Dl~~~l~~~sg~--dl-~~~~~~W~~ 440 (831)
T TIGR02412 367 --LADALSNFDGITYAKGASVLKQLVAWVG-EEAFFAGVNAYFKRHAFGNATLDDLIDSLAKASGR--DL-SAWSDAWLE 440 (831)
T ss_pred --HHHHHHhccCccchhHHHHHHHHHHHHC-HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCC--CH-HHHHHHHHc
Confidence 1122357999999999999999999999 89999999999999999999999999999998753 22 334899999
Q ss_pred CCCCCCCCcccC
Q psy6165 253 TTGMPPHIPKYD 264 (482)
Q Consensus 253 ~pG~P~v~~~~d 264 (482)
++|+|+++++++
T Consensus 441 ~~G~P~l~v~~~ 452 (831)
T TIGR02412 441 TAGVNTLTPEIT 452 (831)
T ss_pred CCCCceEEEEEE
Confidence 999999987654
No 7
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=99.88 E-value=2.5e-23 Score=236.90 Aligned_cols=147 Identities=22% Similarity=0.256 Sum_probs=116.9
Q ss_pred hhcchhhhhc---ccccccCcccccccc-hHHHHHHHHHcCCCch--H-------HHHH--HhccCC-CCceeeccCC--
Q psy6165 113 RLIELAVIEH---IDLFLDVNFESKTLS-GEAHYVIRRKDPNVTN--V-------ILLK--TLGEDN-PLTKLIVDLK-- 174 (482)
Q Consensus 113 ~i~H~AEiaH---GNlVT~a~W~d~WLn-GfAty~~~~~~g~~~l--~-------~~~~--~~g~d~-~~t~Lv~~l~-- 174 (482)
+|+| |++| ||+|||+||.++||| |||+|..+.++..... + .... .|..|. +.+..+....
T Consensus 310 viaH--ElaHqWfGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~hPi~~~~~~ 387 (859)
T COG0308 310 VIAH--ELAHQWFGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTLRTSIALAEDSLPSSHPIRVDVYD 387 (859)
T ss_pred HHHH--HHhhhcccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHhhhHHHhhccccccCCcccCCCC
Confidence 7999 9999 999999999999999 9999998877653321 1 1111 333332 2232222211
Q ss_pred CCCCCCCCCCCcCchHHHHHHHHHHhcCCccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCCCCcchhhHhhhhhCC
Q psy6165 175 HTHPDDAFSTCPYEKGHTFLFYLEQLLGGPKDFEPWLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEINQIEWDLWLNTT 254 (482)
Q Consensus 175 g~dPddaFs~IpYeKGa~~L~mLe~~lGg~e~F~~fLr~Yl~~f~~qs~~t~Df~~~l~~~~~~~~~~~~i~~d~Wl~~p 254 (482)
..++++.|+.|+|+||+++|||||.++| ++.|+++|+.||++|+|++++++||+.++.+.++. ++ ...|+.|++++
T Consensus 388 ~~ei~~~fD~i~Y~KGs~vlrml~~~lG-~e~F~kgl~~yf~~h~~~~~~~~Dl~~a~~~~sg~--dl-~~~~~~w~~q~ 463 (859)
T COG0308 388 PKEINDFFDAIVYEKGASVLRMLETLLG-EEAFRKGLSLYFKRHAGGNATTMDLWKALEDASGK--DL-SAFFESWLSQA 463 (859)
T ss_pred ccchhhhcchhhcchhHHHHHHHHHHHC-HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCC--cH-HHHHHHHHhCC
Confidence 2567789999999999999999999999 99999999999999999999999999999999874 22 33599999999
Q ss_pred CCCCCCcccCC
Q psy6165 255 GMPPHIPKYDT 265 (482)
Q Consensus 255 G~P~v~~~~dt 265 (482)
|+|.+.+..+.
T Consensus 464 G~P~l~v~~~~ 474 (859)
T COG0308 464 GYPVLTVSVRY 474 (859)
T ss_pred CCCceeeeeec
Confidence 99999886554
No 8
>PF09127 Leuk-A4-hydro_C: Leukotriene A4 hydrolase, C-terminal; InterPro: IPR015211 This C-terminal domain is found in peptidases belonging to MEROPS peptidase family M1, particularly: aminopeptidase-1 of Caenorhabditis elegans, aminopeptidase O, aminopeptidase B and the bifunctional leukotriene A4 hydrolase/aminopeptidase. The domain adopts a structure consisting of two layers of parallel alpha-helices, five in the inner layer and four in the outer, arranged in an antiparallel manner, with perpendicular loops containing short helical segments on top. It is required for the formation of a deep cleft harbouring the catalytic Zn2+ site in leukotriene A4 hydrolase []. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0019370 leukotriene biosynthetic process; PDB: 3FUJ_A 3FU3_A 3FTX_A 3FTS_A 3B7R_L 2VJ8_A 3FTW_A 3FUF_A 3FU0_A 3CHO_A ....
Probab=99.85 E-value=9.8e-23 Score=186.11 Aligned_cols=131 Identities=24% Similarity=0.389 Sum_probs=107.0
Q ss_pred cchhhhhhhhhhcccccCCCCCCCChhhhcCCCchhHHHHHHHhhcCCCCC--------cccccccccccccchHHHHHH
Q psy6165 307 SLQDVCNDLANRWISWNHTKETPFSKQDLAAFTPGHKIEFLAKSSSYIAIP--------FIYGYDTSLQDVCNNLASRWI 378 (482)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~q~~~fl~~l~~~~~l~--------~~y~~~~~~~~~~~e~~~rw~ 378 (482)
|+-+.|.+|+.+|++.+.. ..++++.|+++|+++|+++||++|++..+|+ .+|+|+++.| +||++|||
T Consensus 1 sL~~~~~~La~~W~~~~~~-~~~~~~~d~~~~~~~Q~~~FL~~L~~~~~l~~~~l~~Ld~~y~l~~s~N---aEI~~rW~ 76 (143)
T PF09127_consen 1 SLADQCYALAEKWISADED-KSPFSAEDIKDWSSNQWVVFLDQLLEPKPLSPEKLQALDKVYKLSNSKN---AEIRFRWL 76 (143)
T ss_dssp CCCHHHHHHHHHHHHHHCT-CCC-SGGGGTT--HHHHHHHHHHHHTCCG-CHHHHHHHHHHHCHCT-SS---HHHHHHHH
T ss_pred ChHHHHHHHHHHHHhcccc-cCCCCHHHHHhCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCCCCC---HHHHHHHH
Confidence 4668899999999998777 5789999999999999999999998877665 6999999999 89999999
Q ss_pred HHhhccCCCCccccccccCCchhhhhccccCCccCCCcc-ccccchHHH-HHHHHHHHHHhhhcCCCCCCCHHHhhc
Q psy6165 379 SWNHTKETPFSKQDLAAFTPGHKIEFLAKSSSYIAIPFI-YGYDTSLQD-VCNDLASRWISWNHTKETPFSKQDLAA 453 (482)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~wL~~~G~~g~mp~~-P~ydtsL~~-~~~~LA~kwf~~~~~~~~~~s~~dv~~ 453 (482)
+++|+. ...+++.. +++||++.| ||+++ |.|+ .|.+ ..+++|.++|++++.+|||++++.|++
T Consensus 77 ~l~i~~------~~~~~~~~--v~~fL~~~G---RmKfvrPlYr-~L~~~~~~~~A~~~F~~~k~~YHpi~~~~V~k 141 (143)
T PF09127_consen 77 RLAIKA------KYEPALPQ--VEEFLGSQG---RMKFVRPLYR-ALAKPEGRDLAKETFEKAKPFYHPITRQMVEK 141 (143)
T ss_dssp HHHHHT------T-GGGHHH--HHHHHHHS-----HHHHHHHHH-HHHTTTCHHHHHHHHHHHGGGS-HHHHHHHHH
T ss_pred HHHHhc------CcHHHHHH--HHHHHHHcC---CChhHHHHHH-HHHccchHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999995 23345544 889999997 99997 9998 6777 889999999999999999999888764
No 9
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=99.29 E-value=2.4e-12 Score=133.32 Aligned_cols=75 Identities=20% Similarity=0.225 Sum_probs=51.4
Q ss_pred chhcchhhhhc---ccccccCcccccccc-hHHHHHHHHHcCCCch-H--------HHH-HHhc-----cCCCCceeecc
Q psy6165 112 PRLIELAVIEH---IDLFLDVNFESKTLS-GEAHYVIRRKDPNVTN-V--------ILL-KTLG-----EDNPLTKLIVD 172 (482)
Q Consensus 112 ~~i~H~AEiaH---GNlVT~a~W~d~WLn-GfAty~~~~~~g~~~l-~--------~~~-~~~g-----~d~~~t~Lv~~ 172 (482)
..|+| |++| ||+||+.||+|+||+ |||+|+++.+...... . +.+ ..+. ..+|+.. ..
T Consensus 297 ~~iah--ElahqWfGn~vt~~~w~d~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~~--~~ 372 (390)
T PF01433_consen 297 SLIAH--ELAHQWFGNLVTPKWWSDLWLNEGFATYLEYLILEKLFGEWQMMELFLVQEMQRALREDALPNSHPLSS--EV 372 (390)
T ss_dssp HHHHH--HHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHHTSTTCCCSSS--SS
T ss_pred HHHHH--HHHHHHhccCCccccchhhhHHHHHHHHHHHHhHhhccCcccchhhhhhhhHHHHHHHhhcCCCcceEe--CC
Confidence 44899 9999 999999999999999 9999998876542211 0 111 1122 2234431 11
Q ss_pred CCCCCCCCCCCCCcCchH
Q psy6165 173 LKHTHPDDAFSTCPYEKG 190 (482)
Q Consensus 173 l~g~dPddaFs~IpYeKG 190 (482)
....++++.|+.++|.||
T Consensus 373 ~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 373 EDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp SSESCGGGGSSHHHHHHH
T ss_pred CCCCChHHhcCccccCCC
Confidence 123677789999999999
No 10
>KOG1047|consensus
Probab=98.84 E-value=2.4e-09 Score=114.56 Aligned_cols=78 Identities=22% Similarity=0.362 Sum_probs=67.8
Q ss_pred hhhhccccCCccCCCccccccchHHHHHHHHHHHHHhhhc--CCCCCCCHHHhhcCChhhHHHHhcc--------chhhh
Q psy6165 401 KIEFLAKSSSYIAIPFIYGYDTSLQDVCNDLASRWISWNH--TKETPFSKQDLAAFTPGQKIEFLAK--------SSSYI 470 (482)
Q Consensus 401 ~~~wL~~~G~~g~mp~~P~ydtsL~~~~~~LA~kwf~~~~--~~~~~~s~~dv~~~ss~Q~i~FL~~--------~~~l~ 470 (482)
...||+++| |||++|.|+++|++.|++||++|.+..+ ..-..+++.|+++|++.|+++||++ +.+++
T Consensus 445 ~~~Wl~~~G---~Pp~~p~~~~sL~~~~~~La~~W~~~~~~~~~~~~~~a~d~~~~~~~Ql~lfL~~l~q~~~lp~~~~~ 521 (613)
T KOG1047|consen 445 WDLWLNSPG---MPPPKPNFDSSLARPVEALAQKWTAVEELDDAASEFSAEDIEKWSPDQLVLFLDKLLQSKPLPPGTVK 521 (613)
T ss_pred HHHHhcCCC---CCCCCCCccchHHHHHHHHHHHHhhcccccccccccchhhHHhcChHhHHHHHHHHHhcCCCChHHHH
Confidence 458999998 7777899999999999999999998544 4444568899999999999999999 78899
Q ss_pred hhhhhhcCCcC
Q psy6165 471 GMTQVYKTSAM 481 (482)
Q Consensus 471 ~l~~vY~l~~~ 481 (482)
+|+++|+|.++
T Consensus 522 aL~~~Y~l~~s 532 (613)
T KOG1047|consen 522 ALQDTYSLLQS 532 (613)
T ss_pred HHHHHhhhhhc
Confidence 99999997653
No 11
>PF09127 Leuk-A4-hydro_C: Leukotriene A4 hydrolase, C-terminal; InterPro: IPR015211 This C-terminal domain is found in peptidases belonging to MEROPS peptidase family M1, particularly: aminopeptidase-1 of Caenorhabditis elegans, aminopeptidase O, aminopeptidase B and the bifunctional leukotriene A4 hydrolase/aminopeptidase. The domain adopts a structure consisting of two layers of parallel alpha-helices, five in the inner layer and four in the outer, arranged in an antiparallel manner, with perpendicular loops containing short helical segments on top. It is required for the formation of a deep cleft harbouring the catalytic Zn2+ site in leukotriene A4 hydrolase []. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0019370 leukotriene biosynthetic process; PDB: 3FUJ_A 3FU3_A 3FTX_A 3FTS_A 3B7R_L 2VJ8_A 3FTW_A 3FUF_A 3FU0_A 3CHO_A ....
Probab=98.43 E-value=1.4e-07 Score=86.52 Aligned_cols=58 Identities=34% Similarity=0.638 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCCCCHHHhhcCChhhHHHHhcc--------chhhhhhhhhhcCCcC
Q psy6165 423 SLQDVCNDLASRWISWNHTKETPFSKQDLAAFTPGQKIEFLAK--------SSSYIGMTQVYKTSAM 481 (482)
Q Consensus 423 sL~~~~~~LA~kwf~~~~~~~~~~s~~dv~~~ss~Q~i~FL~~--------~~~l~~l~~vY~l~~~ 481 (482)
+|+++|++||++|.+.... ..++++.|+++|+++|+++||++ +++|++|+++|+|+++
T Consensus 1 sL~~~~~~La~~W~~~~~~-~~~~~~~d~~~~~~~Q~~~FL~~L~~~~~l~~~~l~~Ld~~y~l~~s 66 (143)
T PF09127_consen 1 SLADQCYALAEKWISADED-KSPFSAEDIKDWSSNQWVVFLDQLLEPKPLSPEKLQALDKVYKLSNS 66 (143)
T ss_dssp CCCHHHHHHHHHHHHHHCT-CCC-SGGGGTT--HHHHHHHHHHHHTCCG-CHHHHHHHHHHHCHCT-
T ss_pred ChHHHHHHHHHHHHhcccc-cCCCCHHHHHhCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCCC
Confidence 5889999999999988766 44678999999999999999999 7889999999999864
No 12
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=98.38 E-value=4e-07 Score=101.10 Aligned_cols=78 Identities=27% Similarity=0.442 Sum_probs=64.0
Q ss_pred hhhhccccCCccCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCCHHHhhcCChhhHHHHhcc-----------chhh
Q psy6165 401 KIEFLAKSSSYIAIPFIYGYDTSLQDVCNDLASRWISWNHTKETPFSKQDLAAFTPGQKIEFLAK-----------SSSY 469 (482)
Q Consensus 401 ~~~wL~~~G~~g~mp~~P~ydtsL~~~~~~LA~kwf~~~~~~~~~~s~~dv~~~ss~Q~i~FL~~-----------~~~l 469 (482)
...|+..+| +|+.+|.|+++++++|++||++|.+....+..++...|+++|+++|+++||++ ++.+
T Consensus 436 ~~~Wl~~~G---~P~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~q~~~fl~~l~~~~~~~~l~~~~~ 512 (601)
T TIGR02411 436 WDTWLYSPG---LPPVKPNFDTTLADECYALASRWVDAAKDDLSSFNAKDIKDFSSHQLVLFLETLTERKGIVSLPEGHI 512 (601)
T ss_pred HHHHhcCCC---CCCcCCCCCchHHHHHHHHHHHHHhcCCCCCCCcchhhhhhCCHHHHHHHHHHHHhhccCCCCCHHHH
Confidence 358999998 55546999999999999999999864433344445689999999999999998 2379
Q ss_pred hhhhhhhcCCcC
Q psy6165 470 IGMTQVYKTSAM 481 (482)
Q Consensus 470 ~~l~~vY~l~~~ 481 (482)
++|+++|+|+++
T Consensus 513 ~~l~~~y~~~~~ 524 (601)
T TIGR02411 513 KRMGDIYNFAAS 524 (601)
T ss_pred HHHHhhcCccCC
Confidence 999999999864
No 13
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=98.21 E-value=6.3e-07 Score=77.30 Aligned_cols=99 Identities=21% Similarity=0.268 Sum_probs=67.0
Q ss_pred cccchhcchhhhhc---ccccccCcccccccc-hHHHHHHHHHcCCCchHHHHHHhccC--CCCceeeccCCCCCCCCCC
Q psy6165 109 FNFPRLIELAVIEH---IDLFLDVNFESKTLS-GEAHYVIRRKDPNVTNVILLKTLGED--NPLTKLIVDLKHTHPDDAF 182 (482)
Q Consensus 109 ~~~~~i~H~AEiaH---GNlVT~a~W~d~WLn-GfAty~~~~~~g~~~l~~~~~~~g~d--~~~t~Lv~~l~g~dPddaF 182 (482)
....+++| |++| ++.+........|++ |+|.|++..+.. .......+.+... .++..+.. ..+....+
T Consensus 24 ~~~~~l~H--E~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~ 97 (128)
T PF13485_consen 24 WLDRVLAH--ELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGRIED-EFDEDLKQAIESGSLPPLEPLNS---SFDFSWED 97 (128)
T ss_pred HHHHHHHH--HHHHHHHHHHcCCCccCchHHHHHHHHHHhcCccc-hhHHHHHHHHHcCCCCChHHHhc---cccccccc
Confidence 33488999 9999 777766677888999 999999844322 1112222222222 11222211 11224567
Q ss_pred CCCcCchHHHHHHHHHHhcCCccchHHHHHHH
Q psy6165 183 STCPYEKGHTFLFYLEQLLGGPKDFEPWLKKY 214 (482)
Q Consensus 183 s~IpYeKGa~~L~mLe~~lGg~e~F~~fLr~Y 214 (482)
...+|.+|+.++++|+...| +++|.++||.|
T Consensus 98 ~~~~Y~~~~~~~~~L~~~~G-~~~~~~~l~~~ 128 (128)
T PF13485_consen 98 DSLAYYQGYLFVRFLEEKYG-REKFKAFLREY 128 (128)
T ss_pred cccHHHHHHHHHHHHHHHHH-HHHHHHHHHhC
Confidence 78899999999999999999 89999999986
No 14
>KOG1932|consensus
Probab=96.74 E-value=0.02 Score=66.67 Aligned_cols=46 Identities=22% Similarity=0.344 Sum_probs=33.1
Q ss_pred CCCCCCCCCCCCCccEeeeeeeeee-cccCCceEEEEEEEEEeecCCCc
Q psy6165 6 FSPGDPNSFSRPELAVIEHIDLFLD-VNFESKTLSGEAHYVIRRKDPNV 53 (482)
Q Consensus 6 ~~~~D~hS~an~~~v~v~Hl~Ldl~-vDF~~k~l~G~a~l~l~~~~~~~ 53 (482)
.++.+.-|=+-+ .+|.|=-+.|+ +||.++++.|.++++|....++.
T Consensus 13 ~~~g~~~~e~~~--~~~~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL 59 (1180)
T KOG1932|consen 13 EAPGAKTSENPG--RPVLHQKVSLSNIDFSKRSIIGFTEITIQPLVPNL 59 (1180)
T ss_pred cCCCcccccCCC--CcceEEEEEeecccceeeEEEeEEEEEEecCCCCc
Confidence 334444433333 44889999999 99999999999999998644333
No 15
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=88.84 E-value=3.3 Score=45.68 Aligned_cols=78 Identities=22% Similarity=0.376 Sum_probs=61.6
Q ss_pred CCCCCc--CchHHHHHHHHHHhc----CCccchHHHHHHHHHHhcC--CCCCHHHHHHHHHHhhcCCCCcchhhHhhhhh
Q psy6165 181 AFSTCP--YEKGHTFLFYLEQLL----GGPKDFEPWLKKYLAEFAL--QSIDTDNFKAHLTSHFAHKPEINQIEWDLWLN 252 (482)
Q Consensus 181 aFs~Ip--YeKGa~~L~mLe~~l----Gg~e~F~~fLr~Yl~~f~~--qs~~t~Df~~~l~~~~~~~~~~~~i~~d~Wl~ 252 (482)
+-+.++ |.||+.+=-+|.-+| ||+.-++.++|...+.+.. +..+.+++...+....+. + ....+++-++
T Consensus 349 s~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~~~~~t~e~v~av~~~~tg~--d-l~~f~~~~i~ 425 (558)
T COG3975 349 SPNRLVSYYQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRAERGYTPEDVQAVLENVTGL--D-LATFFDEYIE 425 (558)
T ss_pred ccccchhhhhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcCccCCCHHHHHHHHHhhccc--c-HHHHHHHHhh
Confidence 446677 999999988877666 4466799999999999988 889999999999988752 1 2445899999
Q ss_pred CCCCCCCCc
Q psy6165 253 TTGMPPHIP 261 (482)
Q Consensus 253 ~pG~P~v~~ 261 (482)
+.-.|+..+
T Consensus 426 ~~~~~~l~~ 434 (558)
T COG3975 426 GTEPPPLNP 434 (558)
T ss_pred cCCCCChhh
Confidence 888777543
No 16
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=55.77 E-value=65 Score=34.38 Aligned_cols=130 Identities=12% Similarity=0.015 Sum_probs=70.6
Q ss_pred ccchhcchhhhhc-----ccccccCc--ccccccc-hHHHHHHHHHcCCC-----ch-HHHHHHhcc---CCCCceeecc
Q psy6165 110 NFPRLIELAVIEH-----IDLFLDVN--FESKTLS-GEAHYVIRRKDPNV-----TN-VILLKTLGE---DNPLTKLIVD 172 (482)
Q Consensus 110 ~~~~i~H~AEiaH-----GNlVT~a~--W~d~WLn-GfAty~~~~~~g~~-----~l-~~~~~~~g~---d~~~t~Lv~~ 172 (482)
....|+| |.-| =+.|...- =.|+||| |.|.-.+....... .. ...+..|.. ......|..
T Consensus 139 ~~sTlAH--EfQHmInfy~~~v~~g~~~~~dtWLnE~lS~~aEdl~s~~~~~~~n~i~d~R~~~y~~~~~~~~~~~l~~- 215 (366)
T PF10460_consen 139 VYSTLAH--EFQHMINFYQRGVLHGKQYAMDTWLNEMLSMSAEDLYSSKIDPGYNNIRDSRIPYYNNYTSGNYNCSLTA- 215 (366)
T ss_pred HHHHHHH--HHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHhcCCCcccCccccccHHHHhhccccCCCcceee-
Confidence 3478999 9999 24444332 3799999 99988876553311 10 011111211 011111111
Q ss_pred CCCCCCCCCCCCCcCchHHHHHHHHHHhcCCccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCCCCcchhhHhhhhh
Q psy6165 173 LKHTHPDDAFSTCPYEKGHTFLFYLEQLLGGPKDFEPWLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEINQIEWDLWLN 252 (482)
Q Consensus 173 l~g~dPddaFs~IpYeKGa~~L~mLe~~lGg~e~F~~fLr~Yl~~f~~qs~~t~Df~~~l~~~~~~~~~~~~i~~d~Wl~ 252 (482)
... ..-+...|..-++|..+|.+..| .+.+++.|.+ -.+.+.++.++...+....... -...+.+|.-
T Consensus 216 --w~~--~g~~l~sYs~s~~Fg~~L~rQ~G-~~~~~~~l~~------~~~tds~avl~aa~~~~~~~~s-f~~~l~~w~~ 283 (366)
T PF10460_consen 216 --WSS--FGDSLASYSSSYSFGAYLYRQYG-GDFYKKLLTN------SSSTDSEAVLDAAIKQAGPGNS-FGELLRRWGV 283 (366)
T ss_pred --cCC--CccccccchhHHHHHHHHHHHcC-hHHHHHHHhc------CCCCcHHHHHHHHHHhhcCCCC-HHHHHHHHHH
Confidence 111 12234679999999999999999 4655555532 2346777777776655432111 1223555555
Q ss_pred CC
Q psy6165 253 TT 254 (482)
Q Consensus 253 ~p 254 (482)
.-
T Consensus 284 A~ 285 (366)
T PF10460_consen 284 AL 285 (366)
T ss_pred HH
Confidence 44
No 17
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=53.29 E-value=4.8 Score=36.52 Aligned_cols=32 Identities=16% Similarity=0.043 Sum_probs=23.1
Q ss_pred chhcchhhhhc------ccccccCcccccccc-hHHHHHHHH
Q psy6165 112 PRLIELAVIEH------IDLFLDVNFESKTLS-GEAHYVIRR 146 (482)
Q Consensus 112 ~~i~H~AEiaH------GNlVT~a~W~d~WLn-GfAty~~~~ 146 (482)
..|+| |..| |=.--.+.|- .|++ |+|+|++..
T Consensus 3 ~T~~H--Ea~HQl~~N~Gl~~r~~~~P-~Wv~EGlA~yFE~~ 41 (128)
T PF07607_consen 3 ATIAH--EATHQLAFNTGLHPRLADWP-RWVSEGLATYFETP 41 (128)
T ss_pred hHHHH--HHHHHHHHHccccccCCCCc-hHHHHhHHHHcCCC
Confidence 46899 9999 4333344554 8999 999999643
No 18
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=39.51 E-value=47 Score=39.20 Aligned_cols=31 Identities=35% Similarity=0.478 Sum_probs=27.9
Q ss_pred CCccEeeeeeeeeecccCCceEEEEEEEEEee
Q psy6165 17 PELAVIEHIDLFLDVNFESKTLSGEAHYVIRR 48 (482)
Q Consensus 17 ~~~v~v~Hl~Ldl~vDF~~k~l~G~a~l~l~~ 48 (482)
|+. .|.|++||++++++++.++|+++++++.
T Consensus 20 ~~~-~i~~~~Ld~~~~~~~~~~~g~~~i~~~~ 50 (859)
T COG0308 20 PEY-AIYDIDLDLDLDPEKTTFEGSVTIRLDA 50 (859)
T ss_pred ccc-cccceEEEeeecCCccEEEEEEEEEEec
Confidence 444 8899999999999999999999999975
No 19
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=33.25 E-value=1.2e+02 Score=29.73 Aligned_cols=93 Identities=26% Similarity=0.225 Sum_probs=56.4
Q ss_pred cchhcchhhhhc---ccccccCcccccccc-hHHHHHHHHHcCCCchHHHHHHhccCCCCceeeccCCCCCCCCCCCCCc
Q psy6165 111 FPRLIELAVIEH---IDLFLDVNFESKTLS-GEAHYVIRRKDPNVTNVILLKTLGEDNPLTKLIVDLKHTHPDDAFSTCP 186 (482)
Q Consensus 111 ~~~i~H~AEiaH---GNlVT~a~W~d~WLn-GfAty~~~~~~g~~~l~~~~~~~g~d~~~t~Lv~~l~g~dPddaFs~Ip 186 (482)
.-++.| |+.| .|--..+=+ ||- |+|.|.-.. - |-.++..+... .+ +.++ -.
T Consensus 97 ~Gvl~H--E~~H~~Q~~~~~~~P~---~liEGIADyVRl~-a------------G~~~~~w~~p~--~~----~~wd-~g 151 (205)
T PF04450_consen 97 IGVLYH--EMVHCWQWDGRGTAPG---GLIEGIADYVRLK-A------------GYAPPHWKRPG--GG----DSWD-DG 151 (205)
T ss_pred HHHHHH--HHHHHhhcCCCCCCCh---hheecHHHHHHHH-c------------CCCCccccCCC--CC----CCcc-cc
Confidence 477999 9999 222222222 666 999997211 1 11222222110 01 1233 57
Q ss_pred CchHHHHHHHHHH-hcCCccchHHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy6165 187 YEKGHTFLFYLEQ-LLGGPKDFEPWLKKYLAEFALQSIDTDNFKAHLT 233 (482)
Q Consensus 187 YeKGa~~L~mLe~-~lGg~e~F~~fLr~Yl~~f~~qs~~t~Df~~~l~ 233 (482)
|.--|.||.+||. ..| .-|-+-|..=+.+..| .+++|+..+.
T Consensus 152 Y~~TA~FL~wle~~~~~--~gfV~~LN~~m~~~~y---~~~~~~~~l~ 194 (205)
T PF04450_consen 152 YRTTARFLDWLEDNRYG--KGFVRRLNEAMRRDKY---SSDDFWKELL 194 (205)
T ss_pred cHHHHHHHHHHHhcccC--ccHHHHHHHHHhhCCC---CcHhHHHHHH
Confidence 9999999999999 666 5588888888877777 5666665553
No 20
>PF08794 Lipoprot_C: Lipoprotein GNA1870 C terminal like; InterPro: IPR014902 GNA1870 is a surface exposed lipoprotein in Neisseria meningitidis that is a potent antigen and a potential candidate for a vaccine against meningococcal disease. The structure of the C-terminal domain consists of an anti-parallel beta barrel overlaid by a short alpha helical region []. ; PDB: 2W81_F 2W80_D 2Y7S_B 1YS5_A 2KDY_A 3KVD_D 2KC0_A.
Probab=28.30 E-value=52 Score=30.96 Aligned_cols=18 Identities=39% Similarity=0.512 Sum_probs=16.8
Q ss_pred eeeeecccCCceEEEEEE
Q psy6165 26 DLFLDVNFESKTLSGEAH 43 (482)
Q Consensus 26 ~Ldl~vDF~~k~l~G~a~ 43 (482)
.|..+|||++|+=+|.++
T Consensus 65 ~L~YtVDF~~k~GsG~I~ 82 (155)
T PF08794_consen 65 KLTYTVDFDKKTGSGSIE 82 (155)
T ss_dssp EEEEEEETTTTEEEEEEE
T ss_pred eEEEEEeccccccceEEe
Confidence 699999999999999986
No 21
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=22.66 E-value=37 Score=39.66 Aligned_cols=89 Identities=10% Similarity=0.017 Sum_probs=52.0
Q ss_pred hcchhhhhcc---ccc-ccCcccccccchHHHHHHHHHcC--------CCc---hHHHHH-HhccCCCCceeeccCCCCC
Q psy6165 114 LIELAVIEHI---DLF-LDVNFESKTLSGEAHYVIRRKDP--------NVT---NVILLK-TLGEDNPLTKLIVDLKHTH 177 (482)
Q Consensus 114 i~H~AEiaHG---NlV-T~a~W~d~WLnGfAty~~~~~~g--------~~~---l~~~~~-~~g~d~~~t~Lv~~l~g~d 177 (482)
++| ||+|| .-+ ....+.|.|=|=+|.+++..+++ |.. .+..++ .+. ++ +...
T Consensus 240 ~LH--EIgHgYd~~F~~n~~~~~EVWnNI~~d~yQ~~~~~~~e~~~~~wly~~G~r~~~e~~i~------~~---i~~~- 307 (775)
T PF03272_consen 240 ALH--EIGHGYDFGFTRNGTYLNEVWNNILADRYQYTYMTQDERQTDGWLYDYGQRERVEREII------AL---IDNN- 307 (775)
T ss_pred hhh--hhhhhcceeEeeCCcchhhhhhhhhhhhhhhhhcChhhhhhccceecCCchHHHHHHHH------HH---HhcC-
Confidence 899 99994 444 23356799999889999887766 322 111111 111 00 1111
Q ss_pred CCCCCCCCcC-chHHHHHHHHHHhcCCccchHHHHHHHHHH
Q psy6165 178 PDDAFSTCPY-EKGHTFLFYLEQLLGGPKDFEPWLKKYLAE 217 (482)
Q Consensus 178 PddaFs~IpY-eKGa~~L~mLe~~lGg~e~F~~fLr~Yl~~ 217 (482)
..|++..+ +|=..+-.+|-..-| ++.|..+=+.|=+.
T Consensus 308 --~~~~~w~~r~rL~~l~~~m~~~~G-~~~f~~~n~~~R~~ 345 (775)
T PF03272_consen 308 --KPFDSWDLRERLIFLTWLMNTKAG-KDAFTEMNQEYRQL 345 (775)
T ss_pred --CCcccccHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHh
Confidence 12333333 344444446776777 89999999888775
No 22
>PF09836 DUF2063: Uncharacterized protein conserved in bacteria (DUF2063); InterPro: IPR018640 This entry contains proteins that have no known function. ; PDB: 3DEE_A.
Probab=20.68 E-value=53 Score=27.48 Aligned_cols=34 Identities=21% Similarity=0.440 Sum_probs=23.0
Q ss_pred HHhcCCccchHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy6165 198 EQLLGGPKDFEPWLKKYLAEFALQSIDTDNFKAHL 232 (482)
Q Consensus 198 e~~lGg~e~F~~fLr~Yl~~f~~qs~~t~Df~~~l 232 (482)
+.+|| ++.|+...+.|+.++.-.+-+-.++=+.+
T Consensus 56 ~~llG-~~~f~~la~~y~~~~p~~s~~l~~~g~~F 89 (94)
T PF09836_consen 56 RALLG-EEFFDALARAYIRAHPSRSPDLNDYGEEF 89 (94)
T ss_dssp GGGS--HHHHHHHHHHHHHSGGGG-S-GGGHHHHH
T ss_pred HHHhC-HHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Confidence 44889 89999999999999876665544444333
Done!