RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6165
(482 letters)
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide,
hydrolysis, hydrolase, leukotriene biosynthesis,
metal-binding, metalloprotease; 1.47A {Homo sapiens}
SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L*
2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A*
3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A*
3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ...
Length = 616
Score = 132 bits (334), Expect = 2e-33
Identities = 62/139 (44%), Positives = 88/139 (63%), Gaps = 1/139 (0%)
Query: 157 LKTLGEDNPLTKLIVDLKHTHPDDAFSTCPYEKGHTFLFYLEQLLGGPKDFEPWLKKYLA 216
+KT GE +P TKL+VDL PD A+S+ PYEKG LFYLEQLLGGP+ F +LK Y+
Sbjct: 359 VKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVE 418
Query: 217 EFALQSIDTDNFKAHLTSHFAHKPE-INQIEWDLWLNTTGMPPHIPKYDTSLQDVCNNLA 275
+F+ +SI TD++K L S+F K + +NQ++W+ WL + G+PP P YD +L + C L+
Sbjct: 419 KFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALS 478
Query: 276 SRWISWNHTKETPDVTFNF 294
RWI+ +
Sbjct: 479 QRWITAKEDDLNSFNATDL 497
Score = 57.9 bits (140), Expect = 4e-09
Identities = 21/101 (20%), Positives = 44/101 (43%), Gaps = 12/101 (11%)
Query: 10 DPNSFSRP-ELAVIEHIDLFLDVNFESKTLSGEAHYVIRRKDPNVTNVEKNTK------- 61
D S + P + +H+ L V+F +TL+G A ++ ++ N+ ++ +TK
Sbjct: 11 DTCSLASPASVCRTKHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKV 70
Query: 62 ----STLSYNIGTHVDNFGSKLDITLPPKDKDHNRWCLVVK 98
+ Y +G GS ++I+LP + + +
Sbjct: 71 VINGQEVKYALGERQSYKGSPMEISLPIALSKNQEIVIEIS 111
Score = 42.5 bits (100), Expect = 3e-04
Identities = 10/46 (21%), Positives = 24/46 (52%)
Query: 111 FPRLIELAVIEHIDLFLDVNFESKTLSGEAHYVIRRKDPNVTNVIL 156
+ +H+ L V+F +TL+G A ++ ++ N+ +++L
Sbjct: 15 LASPASVCRTKHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVL 60
Score = 40.2 bits (94), Expect = 0.001
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 415 PFIYGYDTSLQDVCNDLASRWISWNHTKETPFSKQDLAAFTPGQKIEFLAK 465
P YD +L + C L+ RWI+ F+ DL + Q EFLA+
Sbjct: 461 PIKPNYDMTLTNACIALSQRWITAKEDDLNSFNATDLKDLSSHQLNEFLAQ 511
Score = 38.2 bits (89), Expect = 0.005
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 357 PFIYGYDTSLQDVCNNLASRWISWNHTKETPFSKQDLAAFTPGHKIEFLAKSSSYIAIP 415
P YD +L + C L+ RWI+ F+ DL + EFLA++ +P
Sbjct: 461 PIKPNYDMTLTNACIALSQRWITAKEDDLNSFNATDLKDLSSHQLNEFLAQTLQRAPLP 519
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A
{Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Length = 632
Score = 129 bits (325), Expect = 3e-32
Identities = 55/147 (37%), Positives = 81/147 (55%), Gaps = 4/147 (2%)
Query: 157 LKTLGEDNPLTKLIVDLKH-THPDDAFSTCPYEKGHTFLFYLEQLLGGPKDFEPWLKKYL 215
+ ++ + + L+ +L T PDDAFST PYEKG LF+LE +LGG +F+P+++ Y
Sbjct: 359 IDSMKDPERFSTLVQNLNDNTDPDDAFSTVPYEKGFNLLFHLETILGGKAEFDPFIRHYF 418
Query: 216 AEFALQSIDTDNFKAHLTSHFAHKPEI-NQIEWDLWLNTTGMPPHIPKYDTSLQDVCNNL 274
+FA +S+DT F L + K EI + ++W+ WL GMPP P + T+L D L
Sbjct: 419 KKFAKKSLDTFQFLDTLYEFYPEKKEILDSVDWETWLYKPGMPP-RPHFITALADNVYQL 477
Query: 275 ASRWISWN-HTKETPDVTFNFTFQYFK 300
A +W+ H K T D F K
Sbjct: 478 ADKWVEMAQHLKTTEDFRSEFNAIDIK 504
Score = 57.1 bits (138), Expect = 7e-09
Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 14/102 (13%)
Query: 4 GPFSPGDPNSFSRPELAVIEHIDLFLDVNFESKTLSGEAHYVIRRKDPNVTNVEK---NT 60
D ++ S + + H DL L V+FE +SG + +++ ++ +T
Sbjct: 12 SRSPEYDQSTLSNYKDFAVLHTDLNLSVSFEKSAISGSVTFQLKKLHEGKNKSDELHLDT 71
Query: 61 K-----------STLSYNIGTHVDNFGSKLDITLPPKDKDHN 91
S + I + GS+L I + +
Sbjct: 72 SYLDVQEVHIDGSKADFQIEQRKEPLGSRLVINNASCNDNFT 113
Score = 39.4 bits (92), Expect = 0.002
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 113 RLIELAVIEHIDLFLDVNFESKTLSGEAHYVIRRKDP--NVTNVILL 157
+ + H DL L V+FE +SG + +++ N ++ + L
Sbjct: 23 SNYKDFAVLHTDLNLSVSFEKSAISGSVTFQLKKLHEGKNKSDELHL 69
Score = 37.5 bits (87), Expect = 0.008
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 414 IPFIYGYDTSLQDVCNDLASRWISWNHTKET------PFSKQDLAAFTPGQKIEFLAK 465
+P + T+L D LA +W+ +T F+ D+ F Q + FL
Sbjct: 460 MPPRPHFITALADNVYQLADKWVEMAQHLKTTEDFRSEFNAIDIKDFNSNQLVLFLET 517
Score = 35.2 bits (81), Expect = 0.052
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 356 IPFIYGYDTSLQDVCNNLASRWISWNHTKET------PFSKQDLAAFTPGHKIEFLAK 407
+P + T+L D LA +W+ +T F+ D+ F + FL
Sbjct: 460 MPPRPHFITALADNVYQLADKWVEMAQHLKTTEDFRSEFNAIDIKDFNSNQLVLFLET 517
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
{Colwellia psychrerythraea}
Length = 605
Score = 115 bits (289), Expect = 1e-27
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 3/140 (2%)
Query: 160 LGEDNPLTKLIVDLKHTHPDDAFSTCPYEKGHTFLFYLEQLLGGPKDFEPWLKKYLAEFA 219
L D T+L +DLK PDDAFS PY KG FL YLE+ G + F+ ++ +Y A
Sbjct: 359 LELDASDTQLYIDLKGRDPDDAFSGVPYVKGQLFLMYLEEKF-GRERFDAFVLEYFDSHA 417
Query: 220 LQSIDTDNFKAHLTSHFAHKPE--INQIEWDLWLNTTGMPPHIPKYDTSLQDVCNNLASR 277
QS+ TDNF +L ++ K ++ E + W+ G+P + P+ ++ V + ++
Sbjct: 418 FQSLGTDNFVKYLKANLTDKYPNIVSDNEINEWIFKAGLPSYAPQPTSNAFKVIDKQINQ 477
Query: 278 WISWNHTKETPDVTFNFTFQ 297
++ T E +
Sbjct: 478 LVTDELTLEQLPTAQWTLHE 497
Score = 60.2 bits (146), Expect = 8e-10
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 16/95 (16%)
Query: 10 DPNSFSRPELAVIEHIDLFLDVNFESKTLSGEAHYVIRRKDPNVTNVEKNTK-------- 61
D +++ + H+ L L+V+F+ K+LSG A + N + +T+
Sbjct: 16 DAYTYANYDQVKATHVYLDLNVDFDKKSLSGFAELSLDWFTDNKAPLILDTRDLVIHRVM 75
Query: 62 --------STLSYNIGTHVDNFGSKLDITLPPKDK 88
++Y++ D GSKL I P K
Sbjct: 76 AKNSQGQWVKVNYDLAKRDDVLGSKLTINTPLNAK 110
Score = 44.4 bits (105), Expect = 7e-05
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 113 RLIELAVIEHIDLFLDVNFESKTLSGEAHYVIRRKDPNVTNVIL 156
+ H+ L L+V+F+ K+LSG A + N +IL
Sbjct: 21 ANYDQVKATHVYLDLNVDFDKKSLSGFAELSLDWFTDNKAPLIL 64
Score = 28.6 bits (64), Expect = 5.6
Identities = 7/56 (12%), Positives = 18/56 (32%)
Query: 420 YDTSLQDVCNDLASRWISWNHTKETPFSKQDLAAFTPGQKIEFLAKSSSYIGMTQV 475
Y + + I+ T E + A +T + + F+ + ++
Sbjct: 459 YAPQPTSNAFKVIDKQINQLVTDELTLEQLPTAQWTLHEWLHFINNLPVDLDHQRM 514
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 2e-07
Identities = 80/521 (15%), Positives = 130/521 (24%), Gaps = 205/521 (39%)
Query: 63 TLSYNIGTHVDNFGSKLDITLP-PKDKDHNRWCLV-------VKTLPSNKEG-DGFNFPR 113
TLS+ GS L+ L P + + K LP EG + P
Sbjct: 10 TLSH---------GS-LEHVLLVP----TASFFIASQLQEQFNKILPEPTEGFAADDEPT 55
Query: 114 -LIELAV--IEHID---------LFLDV------NFESKTLSG-EAHYVIRRKDPNVTNV 154
EL + ++ F V FE+ L G + H + +
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 155 I-----LLKT-----LGEDNPLTKLIVDLKHTHPDDAFSTCPYEKGHTF-LF-------- 195
+ L+K + P K F +F
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDK-------KSNSALFRAVGEGNAQLVAIFGGQGNTDD 168
Query: 196 YLEQL--LGGPKDFEPWLKKYLAEFA--LQSIDTDNFKAHLTSHFAHKPEINQIEWDLWL 251
Y E+L L + + + + A L + A F I + WL
Sbjct: 169 YFEELRDLY--QTYHVLVGDLIKFSAETLSELIRTTLDA--EKVFTQGLNILE-----WL 219
Query: 252 NTTGMPPHIPKYDTSLQDVCNNLASRWISWNHTKETPDVTFNFTFQ---YFKAC---GYD 305
P Y L S IS P Q Y G+
Sbjct: 220 ENPSNTPDKD-Y----------LLSIPISC------P---LIGVIQLAHYVVTAKLLGFT 259
Query: 306 ------------TSLQDVC--------------NDLANR------WI------------- 320
Q + + +I
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL 319
Query: 321 -------SWNHTKETP---FSKQDLAAFTPGHKIEFLAKSSSY------IAIPFIYGYDT 364
S + + P S +L T +++ K++S+ + I + G
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNL---TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN 376
Query: 365 --------SLQDVCNNLASRWISWNHTKE---TPFSKQDLAAFTPGHKIEFLAKSSSYIA 413
SL + L R + PFS++ L F+ FL +A
Sbjct: 377 LVVSGPPQSLYGLNLTL--RKAKAPSGLDQSRIPFSERKLK-FS----NRFLP-----VA 424
Query: 414 IPF--IYGYDTSLQDVCNDLASRWISWNHTKETPFSKQDLA 452
PF + + DL +S+N +D+
Sbjct: 425 SPFHSHL-LVPASDLINKDLVKNNVSFNA--------KDIQ 456
Score = 33.5 bits (76), Expect = 0.17
Identities = 42/277 (15%), Positives = 81/277 (29%), Gaps = 93/277 (33%)
Query: 272 NNLASRWISWNHTKETPDVTFNF---TFQYFKACGYDTSLQDVCNDLANRWISWNHTKET 328
+ ++R ++ +H + T +F A + LQ+ +N
Sbjct: 2 DAYSTRPLTLSH----GSLEHVLLVPTASFFIA----SQLQE----------QFNKILPE 43
Query: 329 P---FSKQDLAAFTPGHKIEFLAKSSSYIAIPF----IYGYDTSLQDVCNNLASRWISWN 381
P F+ D P E + K Y++ + +D L + ++ N
Sbjct: 44 PTEGFAADD----EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN 99
Query: 382 --HT--------KETPFSKQD------LAA-------FTPGHKIEFL----AKSSSYIAI 414
H +T K + A F ++ +AI
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 415 PF---------------IYG-YDTSLQDVCNDLASR---WISWNHTKETPFSKQ-DLAAF 454
F +Y Y + D+ A I E F++ ++ +
Sbjct: 160 -FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 455 ------TPGQKIEFLAKSS-SY--IGMTQV--YKTSA 480
TP + ++L S IG+ Q+ Y +A
Sbjct: 219 LENPSNTPDK--DYLLSIPISCPLIGVIQLAHYVVTA 253
Score = 31.9 bits (72), Expect = 0.59
Identities = 31/154 (20%), Positives = 46/154 (29%), Gaps = 41/154 (26%)
Query: 202 GGPKD---FEPWLKKYLAEFAL-QS-IDTDNFKAHLTSHFAHKPEINQIEWDLWLNTTGM 256
G P+ L+K A L QS I K ++ F L
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF--------------LPVA-S 425
Query: 257 PPHIPKYDTSLQDVCNNLASRWISWNHTK-ETPDVTFNFTFQYFKACGYDTSLQDVCNDL 315
P H + + +L +S+N + P V Y G D L+ + +
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP-V-------YDTFDGSD--LRVLSGSI 475
Query: 316 ANR---WIS-----WNHTKETPFSKQDLAAFTPG 341
+ R I W T F + F PG
Sbjct: 476 SERIVDCIIRLPVKW--ETTTQFKATHILDFGPG 507
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 3e-04
Identities = 68/430 (15%), Positives = 110/430 (25%), Gaps = 157/430 (36%)
Query: 24 HIDLFLDVNFESKTLSGEAHYVIR----------RKDPNVTNVEKNTKSTLSYNIGTHVD 73
H+D FE+ GE Y + + + +V+ KS LS +D
Sbjct: 6 HMD------FET----GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS---KEEID 52
Query: 74 NFGSKLDITLPPKDKDHNR---WCL------VVKTLPSNKEGDGFNF-----------PR 113
I + W L +V+ + F P
Sbjct: 53 ------HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 114 LIELAVIEHID-LFLDVNFESKTLSGEAHYVIRRKDPNVTNVILLKT-LGEDNPLTKLIV 171
++ IE D L+ D +K Y + R P + L+ L E P +++
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAK-------YNVSRLQP----YLKLRQALLELRPAKNVLI 155
Query: 172 -------------------DLKHTHPDDAF----STCPYEKGHTFLFYLEQLLGGPKDFE 208
++ F C T L L++LL +
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC--NSPETVLEMLQKLL---YQID 210
Query: 209 PWLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEINQIE-----WDLW-----------LN 252
P + + + +A L KP N + + L
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 253 TTGMPPHIPKYDTSLQDVCNNLASRWISWNHTKE--TPDVTFNFTFQYFKACGYDTSLQD 310
TT + D + + IS +H TPD + +Y D QD
Sbjct: 271 TTR--------FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-----DCRPQD 317
Query: 311 ----VCN--------------DLANRWISWNHTKETPFSK------------------QD 334
V D W +W H +
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 335 LAAFTPGHKI 344
L+ F P I
Sbjct: 378 LSVFPPSAHI 387
Score = 38.3 bits (88), Expect = 0.006
Identities = 39/381 (10%), Positives = 97/381 (25%), Gaps = 124/381 (32%)
Query: 175 HTHPDDAFSTCPYEKGHTFLFYLEQLLGGPKDFEPWLKKYLAEFALQSIDTDNFKAHLTS 234
H H D Y+ + + + +F+ K + + + + H+
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFV---DNFDC---KDVQDMPKSILSKEEID-HI-- 54
Query: 235 HFAHKPEINQIEWDLWLNTTGMPPHIPKYDTSLQDVCNNLASRWISWNHTKETPDVTFNF 294
K ++ W L + +++ N+
Sbjct: 55 -IMSKDAVSGTLRLFWT---------------LLSKQEEMVQKFVEEVLRI-------NY 91
Query: 295 TFQYFKACGYDTSLQDVCNDLANRWISWNHTKETPFSKQDLAAFTPGH-----KIEFL-- 347
F + ++ + + ++ ++ D F + L
Sbjct: 92 KFLM-------SPIKTEQRQPSMMTRMYIEQRDRLYN--DNQVFAKYNVSRLQPYLKLRQ 142
Query: 348 ----AKSSSYIAIPFIYGYD----TSL-QDVCNNLASR--------WISWNHTKET---- 386
+ + + I G T + DVC + + W++ +
Sbjct: 143 ALLELRPAKNV---LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 387 ------------PFSKQDLAAFTPGHKIEFL-AKSSSYIAIPFIYGYDTSL---QDVCN- 429
++ + + +I + A+ + Y+ L +V N
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK---PYENCLLVLLNVQNA 256
Query: 430 ------DLASR------------WISWNHTKETPFSKQDLAAFTPGQKIEFLAKSSSYIG 471
+L+ + ++S T TP + L K Y+
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTH-ISLDHHSMTLTPDEVKSLLLK---YLD 312
Query: 472 MT------QVYKTS----AMI 482
+V T+ ++I
Sbjct: 313 CRPQDLPREVLTTNPRRLSII 333
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 36.3 bits (84), Expect = 0.024
Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 12/109 (11%)
Query: 173 LKHTHP-----------DDAFSTCPYEKGHTFLFYLEQLLGGPKDFEPWLKKYLAEFALQ 221
L + P + F Y KG L L+ L G + F+ + +YL +F+ +
Sbjct: 430 LNSSRPISKPAETPTQIQEMFDEVSYNKGACILNMLKDFL-GEEKFQKGIIQYLKKFSYR 488
Query: 222 SIDTDNFKAHLTSHFAHKPEINQIEWDLWLNTTGMPPHIPKYDTSLQDV 270
+ D+ + L++ + T + ++++
Sbjct: 489 NAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEM 537
Score = 28.6 bits (64), Expect = 5.4
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 97 VKTLPSNKEGDGFNFPRLIELAVIEHIDLFLDVNFESKTLSGEAHYVIRRKDPNVTNVIL 156
+ +N E + RL + + H DLF+ N S + + T I+
Sbjct: 52 AFPVATNGERFPWQELRLPSVVIPLHYDLFVHPNLTSLDFVASEKIEVLVSNA--TQFII 109
Query: 157 L 157
L
Sbjct: 110 L 110
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 36.3 bits (84), Expect = 0.026
Identities = 15/109 (13%), Positives = 35/109 (32%), Gaps = 12/109 (11%)
Query: 173 LKHTHP-----------DDAFSTCPYEKGHTFLFYLEQLLGGPKDFEPWLKKYLAEFALQ 221
L +HP + F Y+KG L L + L F+ + +YL + + +
Sbjct: 368 LNSSHPVSTPVENPAQIREMFDDVSYDKGACILNMLREYL-SADAFKSGIVQYLQKHSYK 426
Query: 222 SIDTDNFKAHLTSHFAHKPEINQIEWDLWLNTTGMPPHIPKYDTSLQDV 270
+ ++ + S + + H + ++ +
Sbjct: 427 NTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTM 475
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 35.4 bits (82), Expect = 0.042
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 15/96 (15%)
Query: 173 LKHTHP-----------DDAFSTCPYEKGHTFLFYLEQLLGGPKDFEPWLKKYLAEFALQ 221
LK+THP F Y KG + L +E G ++F + KYL +
Sbjct: 326 LKNTHPIEVDVRDPDEISQIFDEISYGKGASILRMIEDYA-GYEEFRKGISKYLNDHKFG 384
Query: 222 SIDTDNFKAHLTSHFAHKPEINQIEWDLWLNTTGMP 257
+ + + + + KP + ++ + W+ G P
Sbjct: 385 NAEGSDLWTAIEDV-SGKP-VKRV-MEYWIKNPGYP 417
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2,
structural genomics, protein structure initiative; 2.05A
{Neisseria meningitidis}
Length = 867
Score = 35.3 bits (81), Expect = 0.050
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 160 LGEDN-PLTKLIVDLKHTHPDDAFSTCPYEKGHTFLFYLEQLLGGPKDFEPWLKKYLAEF 218
ED P + + ++ ++ YEKG + LL G + F+ +K Y
Sbjct: 349 FPEDAGPTAHPVRPASYEEMNNFYTMTVYEKGAEVVRMYHTLL-GEEGFQKGMKLYFQRH 407
Query: 219 ALQSIDTDNFKAHLTSHFAHKPEINQIEWDLWLNTTGMP 257
Q++ D+F+A + A+ ++Q + LW + G P
Sbjct: 408 DGQAVTCDDFRAAMAD--ANGINLDQ--FALWYSQAGTP 442
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 33.6 bits (76), Expect = 0.11
Identities = 21/128 (16%), Positives = 35/128 (27%), Gaps = 43/128 (33%)
Query: 177 HPDDAFSTCPYEKGHTFLFYLEQLLGGPKDFEPWLKKYLAEFALQSIDTDNFKAHLTSHF 236
DD P + LE D + KK+L A + + +
Sbjct: 134 DSDDKAKVPPL---IRIVSGLEL-----SDTKQKGKKFLV-IAYEPFENIAIEL------ 178
Query: 237 AHKP--EINQIEWDLWLNTTGMPPHIPKYDTSLQDVCNNLASRWISWNH-TKETPDVTFN 293
P EI E + + D + L + W+ +K
Sbjct: 179 ---PPNEILFSENNDM--------------DNNNDGVDELNKKCTFWDAISKL------- 214
Query: 294 FTFQ-YFK 300
+ Q +FK
Sbjct: 215 YYVQFFFK 222
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal
membrane, metal-binding, metalloprotease; HET: PHE;
1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A*
2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A
2dq6_A 2dqm_A* 2zxg_A*
Length = 891
Score = 32.2 bits (73), Expect = 0.48
Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 5/93 (5%)
Query: 165 PLTKLIVDLKHTHPDDAFSTCPYEKGHTFLFYLEQLLGGPKDFEPWLKKYLAEFALQSID 224
P+ I ++ ++ YEKG + + LL G ++F+ ++ Y +
Sbjct: 380 PMAHPIRPDMVIEMNNFYTLTVYEKGAEVIRMIHTLL-GEENFQKGMQLYFERHDGSAAT 438
Query: 225 TDNFKAHLTSHFAHKPEINQIEWDLWLNTTGMP 257
D+F ++ + W + +G P
Sbjct: 439 CDDF----VQAMEDASNVDLSHFRRWYSQSGTP 467
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.84
Identities = 9/25 (36%), Positives = 9/25 (36%), Gaps = 4/25 (16%)
Query: 162 EDNPLTKLIVDLKHTHPDDAFSTCP 186
E L KL LK D A P
Sbjct: 18 EKQALKKLQASLKLYADDSA----P 38
Score = 28.0 bits (61), Expect = 3.9
Identities = 5/22 (22%), Positives = 9/22 (40%), Gaps = 8/22 (36%)
Query: 5 PFSPGDPNSFSRPELAV---IE 23
++ S P LA+ +E
Sbjct: 31 LYADD-----SAPALAIKATME 47
>3ve2_A TBP-2, transferrin-binding protein 2; lipoprotein, transferrin
receptor, iron acquisition, vaccine candidate; 2.14A
{Neisseria meningitidis serogroup B} PDB: 3ve1_A 3v8u_A
Length = 658
Score = 29.7 bits (65), Expect = 2.6
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 29 LDVNFESKTLSGEAHYVIRRKDPNVTNVEKNTKSTLSYNI 68
L+V+F +K L+G+ +IR N + +T Y++
Sbjct: 211 LEVDFGNKKLTGK---LIRNNASLNNNTNNDKHTTQYYSL 247
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 29.5 bits (66), Expect = 3.4
Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 165 PLTKLIVDLKHTHPDDAFSTCPYEKGHTFLFYLEQLLGGPKDFEPWLKKYLAEFALQSID 224
PL+ I + ++ ++T Y+KG + +LG + ++ Y+ + +
Sbjct: 363 PLSHPIRPESYVSMENFYTTTVYDKGSEVMRMYLTILG-EEYYKKGFDIYIKKNDGNTAT 421
Query: 225 TDNFKAHL---TSHFAHKPEINQIEWDLWLNTTGMP 257
++F + N ++ LW + +G P
Sbjct: 422 CEDFNYAMEQAYKMKKADNSANLNQYLLWFSQSGTP 457
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 28.5 bits (64), Expect = 6.9
Identities = 7/67 (10%), Positives = 15/67 (22%), Gaps = 5/67 (7%)
Query: 186 PYEKGHTFLFYLEQLLGGPKDFEPWLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEINQI 245
Y + P+ +F ++F + P +
Sbjct: 271 SYAHRPMPVDVDTLGAYAPETVSEHHMPSRLDF-----TLEDFLPAWEATKQLLPALADS 325
Query: 246 EWDLWLN 252
E + N
Sbjct: 326 EIEDGFN 332
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.424
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,588,373
Number of extensions: 448026
Number of successful extensions: 776
Number of sequences better than 10.0: 1
Number of HSP's gapped: 760
Number of HSP's successfully gapped: 40
Length of query: 482
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 385
Effective length of database: 3,993,456
Effective search space: 1537480560
Effective search space used: 1537480560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.0 bits)