BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6172
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D86|A Chain A, Solution Structure Of The Ch Domain From Human Vav-3
Protein
Length = 143
Score = 125 bits (314), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 80/116 (68%)
Query: 6 WRECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQK 65
W++CA WL C VL +H+ W A + DLA TLRDGV++C LLNNL I+++E+N +
Sbjct: 11 WKQCAQWLIHCKVLPTNHRVTWDSAQVFDLAQTLRDGVLLCQLLNNLRAHSINLKEINLR 70
Query: 66 PQLAQFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDFGDFFKVLHTLSKLSLCP 121
PQ++QFLCL+NIR F+ C F + +++LFE LFD DF KV+ TLS+LS P
Sbjct: 71 PQMSQFLCLKNIRTFLTACCETFGMRKSELFEAFDLFDVRDFGKVIETLSRLSRTP 126
>pdb|3KY9|A Chain A, Autoinhibited Vav1
pdb|3KY9|B Chain B, Autoinhibited Vav1
Length = 587
Score = 114 bits (285), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 81/121 (66%)
Query: 4 DLWRECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVN 63
+LWR+C WL +C VL H+ W A + +LA LRDGV++C LLNNL P I++REVN
Sbjct: 5 ELWRQCTHWLIQCRVLPPSHRVTWEGAQVCELAQALRDGVLLCQLLNNLLPHAINLREVN 64
Query: 64 QKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDFGDFFKVLHTLSKLSLCPKV 123
+PQ++QFLCL+NIR F+ C F + ++LFE LFD DF KV++TLS LS P
Sbjct: 65 LRPQMSQFLCLKNIRTFLSTCCEKFGLKRSELFEAFDLFDVQDFGKVIYTLSALSWTPIA 124
Query: 124 Q 124
Q
Sbjct: 125 Q 125
>pdb|2L3G|A Chain A, Solution Nmr Structure Of Ch Domain Of Rho Guanine
Nucleotide Exchange Factor 7 From Homo Sapiens,
Northeast Structural Genomics Consortium Target Hr4495e
Length = 126
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 16/114 (14%)
Query: 8 ECAAWLTRCGVLREDHKANWSEASMSD----LALTLRDGVVICNLLNNLDPACIDMREVN 63
+ WL GVL K ++SD L +L+DGVV+C LL L P I+ +V
Sbjct: 16 QTVTWLITLGVLESPKK------TISDPEGFLQASLKDGVVLCRLLERLLPGTIE--KVY 67
Query: 64 QKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDFGDFFKVLHTLSKL 117
+P+ ++ CL NIR F++ C + + F+ + L+ +F KVL +L L
Sbjct: 68 PEPR-SESECLSNIREFLRGCGASLRL---ETFDANDLYQGQNFNKVLSSLVTL 117
>pdb|1WYP|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin 1
Length = 136
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 39 LRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEP 98
L+DG+++C +N L P + +++N+ Q + L NI FI+ Y + +D+FE
Sbjct: 42 LKDGIILCEFINKLQPGSV--KKINESTQ--NWHQLENIGNFIKAITKY-GVKPHDIFEA 96
Query: 99 SMLFDFGDFFKVLHTLSKLSLCPKVQKQK 127
+ LF+ + +V TL L+ K + K
Sbjct: 97 NDLFENTNHTQVQSTLLALASMAKTKGNK 125
>pdb|1WYR|A Chain A, Solution Structure Of The Ch Domain Of Human Rho Guanine
Nucleotide Exchange Factor 6
Length = 121
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 7 RECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKP 66
+ WL GVL K L +L++GVV+C L+N L P ++ ++ P
Sbjct: 9 EQIVTWLISLGVLESPKKTICDPEEF--LKSSLKNGVVLCKLINRLMPGSVEKFCLD--P 64
Query: 67 QLAQFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDFGDFFKVLHTL 114
Q + C+ NI F++ C + ++F+P L+ +F KVL TL
Sbjct: 65 Q-TEADCINNINDFLKGCATL----QVEIFDPDDLYSGVNFSKVLSTL 107
>pdb|1H67|A Chain A, Nmr Structure Of The Ch Domain Of Calponin
Length = 108
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 39 LRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEP 98
L+DGV++C L+N L P + ++VN Q + L NI F++ ++Y + +D+FE
Sbjct: 28 LKDGVILCELINKLQPGSV--QKVNDPVQ--NWHKLENIGNFLRAIKHY-GVKPHDIFEA 82
Query: 99 SMLFDFGDFFKVLHTLSKLSLCPKVQ 124
+ LF+ + +V TL L+ K +
Sbjct: 83 NDLFENTNHTQVQSTLIALASQAKTK 108
>pdb|1WYN|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin-2
Length = 146
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 34 DLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRNYFDIAEN 93
D L+DG ++C L+N L P + ++N+ Q + L N+ FI+ +Y +
Sbjct: 37 DFQKGLKDGTILCTLMNKLQPGSVP--KINRSMQ--NWHQLENLSNFIKAMVSY-GMNPV 91
Query: 94 DLFEPSMLFDFGDFFKVLHTLSKLSLCPKVQKQ 126
DLFE + LF+ G+ +V +L L+L K + +
Sbjct: 92 DLFEANDLFESGNMTQVQVSL--LALAGKAKTK 122
>pdb|1UJO|A Chain A, Solution Structure Of The Ch Domain From Mouse Trangelin
Length = 144
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 39 LRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEP 98
L++GV++ L+N+L P +V + P F + + F++ +Y + + D+F+
Sbjct: 40 LKNGVILSKLVNSLYPEGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDY-GVIKTDMFQT 98
Query: 99 SMLFDFGDFFKVLHTLSKLS 118
L++ D V TL L
Sbjct: 99 VDLYEGKDMAAVQRTLMALG 118
>pdb|1AOA|A Chain A, N-Terminal Actin-Crosslinking Domain From Human Fimbrin
Length = 275
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 34 DLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRI 79
DL + DG+V+C ++N P ID R +N+K +L F+ N+ +
Sbjct: 55 DLFKAVGDGIVLCKMINLSVPDTIDERAINKK-KLTPFIIQENLNL 99
>pdb|1WYM|A Chain A, Solution Structure Of The Ch Domain Of Human Transgelin-2
Length = 155
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 39 LRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEP 98
L+DG V+C L+N L P + Q +A F + I F+Q Y I D+F+
Sbjct: 48 LKDGTVLCELINALYPEGQAPVKKIQASTMA-FKQMEQISQFLQAAERY-GINTTDIFQT 105
Query: 99 SMLFDFGDFFKVLHTLSKLS 118
L++ + V TL L
Sbjct: 106 VDLWEGKNMACVQRTLMNLG 125
>pdb|1PXY|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of
Arabidopsis Fimbrin
pdb|1PXY|B Chain B, Crystal Structure Of The Actin-Crosslinking Core Of
Arabidopsis Fimbrin
Length = 506
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 39 LRDGVVICNLLNNLDPACIDMREVNQK 65
++DGV++C L+N P ID R +N K
Sbjct: 43 VKDGVLLCKLINVAVPGTIDERAINTK 69
>pdb|2DK9|A Chain A, Solution Structure Of Calponin Homology Domain Of Human
Mical-1
Length = 118
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 21 EDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVN 63
++ A + +SDL+ + DG+ +C L+ L P ++ E+
Sbjct: 23 QEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQ 65
>pdb|1WYL|A Chain A, Solution Structure Of The Ch Domain Of Human Nedd9
Interacting Protein With Calponin Homology And Lim
Domains
Length = 116
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 21 EDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVN 63
++ A + +SDL+ + DG+ +C L+ L P ++ E+
Sbjct: 17 QEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQ 59
>pdb|1RT8|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of
Schizosaccharomyces Pombe Fimbrin
Length = 513
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 16/102 (15%)
Query: 31 SMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKP----QLAQFLCLRNIRIFIQICRN 86
S+ D LRDG+++ + + P ++ ++VN+ P ++ +F + N + + +N
Sbjct: 302 SIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKN 361
Query: 87 ----YFDIAENDLFEPSMLFDFG--------DFFKVLHTLSK 116
I D+ + S + K LH+LS+
Sbjct: 362 QGFSLVGIQGADITDGSRTLTLALVWQMMRMNITKTLHSLSR 403
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 40 RDGVVICNLLNNLDPACIDMREVNQ----KPQLAQFLCLRNIRIFIQICRNYFDIA 91
+DG+++ L+N+ P ID R +N+ KP L F C+ N + I + I+
Sbjct: 49 KDGLILSKLINDSVPDTIDERVLNKQRNNKP-LDNFKCIENNNVVINSAKAMGGIS 103
>pdb|2FHZ|A Chain A, Molecular Basis Of Inhibition Of The Ribonuclease Activity
In Colicin E5 By Its Cognate Immunity Protein
Length = 109
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 93 NDLFEPSMLFDFGDFFKVLHTLSKLSLCPKV 123
N LFE ++L+D GD F L + + L PK
Sbjct: 3 NKLFEHTVLYDSGDAFFELKGNASMKLSPKA 33
>pdb|2ZH7|A Chain A, Complex Structure Of Afcca With Trnaminidg
pdb|2ZHB|A Chain A, Complex Structure Of Afcca With Trnaminiduc
Length = 436
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 62 VNQKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEP 98
V++K +A L L N+ F+ +CR + + F+P
Sbjct: 219 VDEKRNVAANLSLDNLARFVHLCREFMEAPSLGFFKP 255
>pdb|3OVA|A Chain A, How The Cca-Adding Enzyme Selects Adenine Over Cytosine In
Position 76 Of Trna
Length = 435
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 62 VNQKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEP 98
V++K +A L L N+ F+ +CR + + F+P
Sbjct: 218 VDEKRNVAANLSLDNLARFVHLCREFMEAPSLGFFKP 254
>pdb|1UET|A Chain A, Divergent Evolutions Of Trinucleotide Polymerization
Revealed By An Archaeal Cca-Adding Enzyme Structure
pdb|1UEU|A Chain A, Divergent Evolutions Of Trinucleotide Polymerization
Revealed By An Archaeal Cca-Adding Enzyme Structure
pdb|1UEV|A Chain A, Divergent Evolutions Of Trinucleotide Polymerization
Revealed By An Archaeal Cca-Adding Enzyme Structure
pdb|1R89|A Chain A, Crystal Structures Of An Archaeal Class I Cca-Adding
Enzyme And Its Nucleotide Complexes
pdb|1R8A|A Chain A, Crystal Structures Of An Archaeal Class I Cca-Adding
Enzyme And Its Nucleotide Complexes
pdb|1R8B|A Chain A, Crystal Structures Of An Archaeal Class I Cca-Adding
Enzyme And Its Nucleotide
pdb|1R8C|A Chain A, Crystal Structures Of An Archaeal Class I Cca-Adding
Enzyme And Its Nucleotide
pdb|1SZ1|A Chain A, Mechanism Of Cca-Adding Enzymes Specificity Revealed By
Crystal Structures Of Ternary Complexes
pdb|1SZ1|B Chain B, Mechanism Of Cca-Adding Enzymes Specificity Revealed By
Crystal Structures Of Ternary Complexes
pdb|1TFW|A Chain A, How Cca Is Added To The 3' End Of Immature Trna Without
The Use Of An Oligonucleotide Template
pdb|1TFW|B Chain B, How Cca Is Added To The 3' End Of Immature Trna Without
The Use Of An Oligonucleotide Template
pdb|1TFW|C Chain C, How Cca Is Added To The 3' End Of Immature Trna Without
The Use Of An Oligonucleotide Template
pdb|1TFW|D Chain D, How Cca Is Added To The 3' End Of Immature Trna Without
The Use Of An Oligonucleotide Template
pdb|1TFY|A Chain A, How Cca Is Added To The 3' End Of Immature Trna Without
The Use Of An Oligonucleotide Template
pdb|1TFY|B Chain B, How Cca Is Added To The 3' End Of Immature Trna Without
The Use Of An Oligonucleotide Template
pdb|1TFY|C Chain C, How Cca Is Added To The 3' End Of Immature Trna Without
The Use Of An Oligonucleotide Template
pdb|1TFY|D Chain D, How Cca Is Added To The 3' End Of Immature Trna Without
The Use Of An Oligonucleotide Template
pdb|2DR5|A Chain A, Complex Structure Of Cca Adding Enzyme With Mini-Helix
Lacking Cca
pdb|2DR7|A Chain A, Complex Structure Of Cca-Adding Enzyme With Trnaminidc
pdb|2DR8|A Chain A, Complex Structure Of Cca-Adding Enzyme With Trnaminidc And
Ctp
pdb|2DR9|A Chain A, Complex Structure Of Cca-adding Enzyme With Trnaminidcc
pdb|2DRA|A Chain A, Complex Structure Of Cca-Adding Enzyme With Trnaminidcc
And Atp
pdb|2DRB|A Chain A, Complex Structure Of Cca-Adding Enzyme With Trnaminicca
pdb|2DVI|A Chain A, Complex Structure Of Cca-Adding Enzyme, Mini-Dcc And Ctp
pdb|2ZH1|A Chain A, Complex Structure Of Afcca With Trnaminida
pdb|2ZH2|A Chain A, Complex Structure Of Afcca With Trnaminidac
pdb|2ZH3|A Chain A, Complex Structure Of Afcca With Trnaminidca
pdb|2ZH4|A Chain A, Complex Structure Of Afcca With Trnaminidcg
pdb|2ZH5|A Chain A, Complex Structure Of Afcca With Trnaminidcu
pdb|2ZH6|A Chain A, Complex Structure Of Afcca With Trnaminidcu And Atp
pdb|2ZH8|A Chain A, Complex Structure Of Afcca With Trnaminidgc
pdb|2ZH9|A Chain A, Complex Structure Of Afcca With Trnaminidu
pdb|2ZHA|A Chain A, Complex Structure Of Afcca With Trnaminidu And Ctp
pdb|3OUY|B Chain B, How The Cca-Adding Enzyme Selects Adenine Over Cytosine At
Position 76 Of Trna
Length = 437
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 62 VNQKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEP 98
V++K +A L L N+ F+ +CR + + F+P
Sbjct: 220 VDEKRNVAANLSLDNLARFVHLCREFMEAPSLGFFKP 256
>pdb|3OVS|A Chain A, How The Cca-Adding Enzyme Selects Adenine Over Cytosine In
Position 76 Of Trna
pdb|3OVS|B Chain B, How The Cca-Adding Enzyme Selects Adenine Over Cytosine In
Position 76 Of Trna
Length = 441
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 62 VNQKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEP 98
V++K +A L L N+ F+ +CR + + F+P
Sbjct: 220 VDEKRNVAANLSLDNLARFVHLCREFMEAPSLGFFKP 256
>pdb|3OVB|A Chain A, How The Cca-Adding Enzyme Selects Adenine Over Cytosine In
Position 76 Of Trna
pdb|3OVB|B Chain B, How The Cca-Adding Enzyme Selects Adenine Over Cytosine In
Position 76 Of Trna
Length = 441
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 62 VNQKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEP 98
V++K +A L L N+ F+ +CR + + F+P
Sbjct: 220 VDEKRNVAANLSLDNLARFVHLCREFMEAPSLGFFKP 256
>pdb|3OUY|A Chain A, How The Cca-Adding Enzyme Selects Adenine Over Cytosine At
Position 76 Of Trna
pdb|3OV7|A Chain A, How The Cca-Adding Enzyme Selects Adenine Over Cytosine In
Position 76 Of Trna
pdb|3OV7|B Chain B, How The Cca-Adding Enzyme Selects Adenine Over Cytosine In
Position 76 Of Trna
Length = 441
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 62 VNQKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEP 98
V++K +A L L N+ F+ +CR + + F+P
Sbjct: 220 VDEKRNVAANLSLDNLARFVHLCREFMEAPSLGFFKP 256
>pdb|2HYU|A Chain A, Human Annexin A2 With Heparin Tetrasaccharide Bound
pdb|2HYV|A Chain A, Human Annexin A2 With Heparin Hexasaccharide Bound
pdb|2HYW|A Chain A, Human Annexin A2 With Calcium Bound
pdb|2HYW|B Chain B, Human Annexin A2 With Calcium Bound
Length = 308
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 16/116 (13%)
Query: 15 RCGVLREDHKANWSEASMSDLALTLRDGV------VICNLLNNLDPACIDMREV------ 62
R R+D + + +LA L+ + VI LL PA D E+
Sbjct: 32 RSNAQRQDIAFAYQRRTKKELASALKSALSGHLETVILGLLKT--PAQYDASELKASMKG 89
Query: 63 --NQKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDFGDFFKVLHTLSK 116
+ L + +C R + +I R Y ++ + DL + + GDF K++ L+K
Sbjct: 90 LGTDEDSLIEIICSRTNQELQEINRVYKEMYKTDLEKDIISDTSGDFRKLMVALAK 145
>pdb|2D88|A Chain A, Solution Structure Of The Ch Domain From Human Mical-3
Protein
Length = 121
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 13/70 (18%)
Query: 26 NWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICR 85
++ +++DL ++ + G+ +C +++ P ID +++ +N+ Q+
Sbjct: 24 GYAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSLDE----------QNVEKNNQLA- 72
Query: 86 NYFDIAENDL 95
FDIAE +L
Sbjct: 73 --FDIAEKEL 80
>pdb|2E9K|A Chain A, Solution Structure Of The Ch Domain From Human Mical-2
Length = 121
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 8/44 (18%), Positives = 22/44 (50%)
Query: 21 EDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQ 64
+ + +++DL + R G+ +C +++ P I+ +N+
Sbjct: 19 QQQTEGYQHVNVTDLTTSWRSGLALCAIIHRFRPELINFDSLNE 62
>pdb|1XJL|A Chain A, Structure Of Human Annexin A2 In The Presence Of Calcium
Ions
pdb|1XJL|B Chain B, Structure Of Human Annexin A2 In The Presence Of Calcium
Ions
Length = 319
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 16/116 (13%)
Query: 15 RCGVLREDHKANWSEASMSDLALTLRDGV------VICNLLNNLDPACIDMREV------ 62
R R+D + + +LA L+ + VI LL PA D E+
Sbjct: 43 RSNEQRQDIAFAYQRRTKKELASALKSALSGHLETVILGLLKT--PAQYDASELKASMKG 100
Query: 63 --NQKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDFGDFFKVLHTLSK 116
+ L + +C R + +I R Y ++ + DL + + GDF K++ L+K
Sbjct: 101 LGTDEDSLIEIICSRTNQELQEINRVYKEMYKTDLEKDIISDTSGDFRKLMVALAK 156
>pdb|1W7B|A Chain A, Annexin A2: Does It Induce Membrane Aggregation By A New
Multimeric State Of The Protein
Length = 339
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 16/116 (13%)
Query: 15 RCGVLREDHKANWSEASMSDLALTLRDGV------VICNLLNNLDPACIDMREV------ 62
R R+D + + +LA L+ + VI LL PA D E+
Sbjct: 63 RSNEQRQDIAFAYQRRTKKELASALKSALSGHLETVILGLLKT--PAQYDASELKASMKG 120
Query: 63 --NQKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDFGDFFKVLHTLSK 116
+ L + +C R + +I R Y ++ + DL + + GDF K++ L+K
Sbjct: 121 LGTDEDSLIEIICSRTNQELQEINRVYKEMYKTDLEKDIISDTSGDFRKLMVALAK 176
>pdb|2VM5|A Chain A, Human Bir2 Domain Of Baculoviral Inhibitor Of Apoptosis
Repeat-Containing 1 (Birc1)
Length = 106
Score = 25.4 bits (54), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 2 SDDLWRECAAWLTRCGVLR 20
DD W+E A W +C LR
Sbjct: 72 GDDPWKEHAKWFPKCEFLR 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.140 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,777,256
Number of Sequences: 62578
Number of extensions: 125187
Number of successful extensions: 285
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 259
Number of HSP's gapped (non-prelim): 28
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)