Query psy6172
Match_columns 130
No_of_seqs 141 out of 1024
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 19:33:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6172.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6172hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2046|consensus 100.0 5.1E-32 1.1E-36 199.9 9.8 111 1-124 22-132 (193)
2 KOG2996|consensus 100.0 4.1E-31 8.9E-36 219.7 9.2 126 4-130 2-127 (865)
3 COG5199 SCP1 Calponin [Cytoske 99.9 1.9E-28 4.2E-33 174.2 6.1 112 1-126 10-121 (178)
4 cd00014 CH Calponin homology d 99.9 7.6E-23 1.7E-27 137.5 7.8 104 5-120 2-105 (107)
5 smart00033 CH Calponin homolog 99.8 9.3E-21 2E-25 126.2 8.4 101 6-117 2-103 (103)
6 PF00307 CH: Calponin homology 99.8 1.5E-19 3.4E-24 121.4 7.5 106 6-120 1-106 (108)
7 KOG2128|consensus 99.8 2.4E-19 5.2E-24 160.0 6.5 101 7-120 45-145 (1401)
8 COG5261 IQG1 Protein involved 99.8 2.9E-19 6.2E-24 153.8 5.5 103 7-122 47-149 (1054)
9 KOG0532|consensus 99.7 7.7E-18 1.7E-22 141.3 7.6 90 32-122 594-687 (722)
10 KOG0046|consensus 99.5 2.6E-14 5.6E-19 118.7 4.0 102 3-106 118-220 (627)
11 PF11971 CAMSAP_CH: CAMSAP CH 99.3 4.8E-12 1E-16 83.2 4.9 75 29-104 10-84 (85)
12 PF06395 CDC24: CDC24 Calponin 99.0 1.8E-09 3.9E-14 71.4 6.3 84 32-117 3-88 (89)
13 KOG0046|consensus 98.8 5.9E-09 1.3E-13 87.2 6.4 91 4-106 388-480 (627)
14 COG5069 SAC6 Ca2+-binding acti 97.5 0.00031 6.6E-09 59.0 7.1 92 8-100 123-217 (612)
15 KOG0517|consensus 97.4 0.00048 1E-08 65.0 6.9 84 8-105 52-135 (2473)
16 KOG3631|consensus 97.2 0.0021 4.5E-08 50.7 7.5 106 4-121 90-195 (365)
17 COG5069 SAC6 Ca2+-binding acti 95.5 0.018 3.9E-07 48.7 4.0 91 2-104 374-472 (612)
18 PF06294 DUF1042: Domain of Un 95.1 0.037 8E-07 40.2 4.2 93 9-118 1-99 (158)
19 KOG3000|consensus 93.2 0.2 4.3E-06 40.0 5.0 83 7-105 18-100 (295)
20 PF05622 HOOK: HOOK protein; 84.4 1.9 4.2E-05 38.1 5.0 73 3-86 6-81 (713)
21 KOG0035|consensus 76.6 2.1 4.5E-05 39.0 2.5 71 29-107 160-231 (890)
22 KOG0517|consensus 75.2 4.1 8.8E-05 40.1 4.1 70 28-105 184-253 (2473)
23 KOG3631|consensus 69.0 13 0.00029 29.7 5.1 71 31-104 276-346 (365)
24 cd08539 SAM_PNT-ESE-3-like Ste 67.1 5.5 0.00012 25.4 2.2 38 7-50 11-48 (74)
25 cd08537 SAM_PNT-ESE-1-like Ste 59.4 10 0.00023 24.4 2.5 38 7-50 16-53 (78)
26 PF11559 ADIP: Afadin- and alp 43.8 63 0.0014 22.6 4.8 41 78-118 4-44 (151)
27 PF00536 SAM_1: SAM domain (St 42.7 23 0.00051 20.8 2.1 35 6-50 5-39 (64)
28 KOG1271|consensus 33.5 75 0.0016 24.3 3.9 88 2-106 44-132 (227)
29 PF07894 DUF1669: Protein of u 32.6 36 0.00079 27.1 2.2 49 36-94 154-202 (284)
30 cd08203 SAM_PNT Sterile alpha 31.7 53 0.0011 20.0 2.4 36 7-50 8-43 (66)
31 PF03221 HTH_Tnp_Tc5: Tc5 tran 31.4 63 0.0014 18.7 2.7 19 3-21 2-20 (66)
32 PF00550 PP-binding: Phosphopa 29.6 1E+02 0.0022 17.7 3.5 32 78-113 35-66 (67)
33 PF10281 Ish1: Putative stress 29.0 1E+02 0.0022 16.5 3.0 31 6-41 6-36 (38)
34 cd08540 SAM_PNT-ERG Sterile al 27.0 77 0.0017 20.1 2.6 24 71-94 7-30 (75)
35 PF12579 DUF3755: Protein of u 27.0 45 0.00098 18.1 1.3 14 72-85 14-27 (35)
36 cd08531 SAM_PNT-ERG_FLI-1 Ster 26.2 81 0.0018 19.9 2.6 24 71-94 7-30 (75)
37 cd08757 SAM_PNT_ESE Sterile al 26.1 44 0.00094 20.6 1.3 37 7-50 8-45 (68)
38 PF06992 Phage_lambda_P: Repli 24.7 39 0.00084 26.2 1.1 18 76-93 102-123 (233)
39 cd08533 SAM_PNT-ETS-1,2 Steril 24.3 98 0.0021 19.4 2.7 24 72-95 7-30 (71)
40 cd08535 SAM_PNT-Tel_Yan Steril 23.8 97 0.0021 19.2 2.6 22 73-94 7-28 (68)
41 cd08541 SAM_PNT-FLI-1 Sterile 22.1 1.1E+02 0.0023 20.3 2.6 25 71-95 19-43 (91)
42 cd08538 SAM_PNT-ESE-2-like Ste 22.1 71 0.0015 20.5 1.8 38 7-50 13-50 (78)
43 KOG0251|consensus 21.7 1.4E+02 0.003 25.7 3.9 45 71-120 246-290 (491)
44 PF12844 HTH_19: Helix-turn-he 21.0 39 0.00084 19.7 0.4 23 77-100 41-63 (64)
45 smart00251 SAM_PNT SAM / Point 20.7 66 0.0014 20.6 1.4 36 7-50 23-58 (82)
46 cd08542 SAM_PNT-ETS-1 Sterile 20.0 1.3E+02 0.0028 19.7 2.7 24 71-94 21-44 (88)
No 1
>KOG2046|consensus
Probab=99.97 E-value=5.1e-32 Score=199.93 Aligned_cols=111 Identities=28% Similarity=0.525 Sum_probs=96.3
Q ss_pred CChHHHHHHHHHHHHhcCCCCCCccccccccHhhHHHHccchHHHHHHhhhhcCCCCCcccccCCcccchhhhhhhHHHH
Q psy6172 1 MSDDLWRECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIF 80 (130)
Q Consensus 1 ~~~~~e~e~~~WI~~~~~~~~~~~~~~~~~~~~~l~~~L~dGvvLC~L~N~l~P~~v~~~~i~~~~~~~~f~~~eNI~~F 80 (130)
+|+++|.++++||+.+...+. +...+|.+.|+||++||+|+|+|.|+.++ ++| .|.+ .|+++|||++|
T Consensus 22 ~~~~~~~el~~WI~~~~~~~~--------~~~~~f~~~LKDG~iLCkl~N~l~p~~~~--~~~-~s~~-~f~qmEnIs~F 89 (193)
T KOG2046|consen 22 YDDELEKELREWIENVVLTEL--------PARGDFQDLLKDGVILCKLINKLYPGVVK--KIN-ESKM-AFVQMENISNF 89 (193)
T ss_pred cCHHHHHHHHHHHHHhhccCC--------CcccCHHHHHcchHHHHHHHHHhCcCccc--ccc-cccc-cHHHHHHHHHH
Confidence 578999999999999733332 23469999999999999999999997774 555 4555 79999999999
Q ss_pred HHHHHhhcCCCccCCCCccccccccChHHHHHHHHHHhCchhhh
Q psy6172 81 IQICRNYFDIAENDLFEPSMLFDFGDFFKVLHTLSKLSLCPKVQ 124 (130)
Q Consensus 81 l~~c~~~~Gl~~~~lF~~~DL~e~~n~~~V~~~L~~L~~~~~~~ 124 (130)
+++|+. +|+++.++|+++||||++|+.+|+.||++|++.+...
T Consensus 90 i~a~~~-ygv~~~d~FqtvDLfE~kd~~~V~vtL~aLa~~a~~~ 132 (193)
T KOG2046|consen 90 IKAAKK-YGVPEVDLFQTVDLFEGKDMAQVQVTLLALARKAQKK 132 (193)
T ss_pred HHHHHh-cCCChhhcccccccccCCCHHHHHHHHHHHHHHHhhc
Confidence 999995 9999999999999999999999999999999987543
No 2
>KOG2996|consensus
Probab=99.97 E-value=4.1e-31 Score=219.73 Aligned_cols=126 Identities=49% Similarity=0.959 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccHhhHHHHccchHHHHHHhhhhcCCCCCcccccCCcccchhhhhhhHHHHHHH
Q psy6172 4 DLWRECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQI 83 (130)
Q Consensus 4 ~~e~e~~~WI~~~~~~~~~~~~~~~~~~~~~l~~~L~dGvvLC~L~N~l~P~~v~~~~i~~~~~~~~f~~~eNI~~Fl~~ 83 (130)
|.|++|.+|+..|-+++.+|+.+++++++.+|..+|||||+||+|+|.|.|++|+.++||..|+|++|.|..||+.|+.+
T Consensus 2 elWrqCarWLidckVLptnhrvtw~~a~v~dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~rpQmSqFLClkNIrtFl~~ 81 (865)
T KOG2996|consen 2 ELWRQCARWLIDCKVLPTNHRVTWDSAQVFDLAQALRDGVLLCQLLNNLVPHSIDLKEINLRPQMSQFLCLKNIRTFLMF 81 (865)
T ss_pred cHHHHHHHHHhhccccCCCcccccCcchHHHHHHHHhhhhHHHHHHhhcCCCcccHHHhhcCCCccchhhHhhHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCccCCCCccccccccChHHHHHHHHHHhCchhhhhhcCCC
Q psy6172 84 CRNYFDIAENDLFEPSMLFDFGDFFKVLHTLSKLSLCPKVQKQKNIK 130 (130)
Q Consensus 84 c~~~~Gl~~~~lF~~~DL~e~~n~~~V~~~L~~L~~~~~~~~~~~~~ 130 (130)
|.+.||+..++||++.|||+.++|.+|+.||+.||++.+|+.+ ||+
T Consensus 82 C~~~Fglr~seLF~afDLfdv~dFgKVi~tlS~LS~t~ial~r-Gi~ 127 (865)
T KOG2996|consen 82 CCEKFGLRDSELFEAFDLFDVRDFGKVIKTLSRLSHTPIALNR-GIR 127 (865)
T ss_pred HHHHhCCchhhhcchhhhhhhhhHHHHHHHHHHhccChHHHhc-CCC
Confidence 9999999999999999999999999999999999999999999 986
No 3
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=99.95 E-value=1.9e-28 Score=174.22 Aligned_cols=112 Identities=27% Similarity=0.435 Sum_probs=99.6
Q ss_pred CChHHHHHHHHHHHHhcCCCCCCccccccccHhhHHHHccchHHHHHHhhhhcCCCCCcccccCCcccchhhhhhhHHHH
Q psy6172 1 MSDDLWRECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIF 80 (130)
Q Consensus 1 ~~~~~e~e~~~WI~~~~~~~~~~~~~~~~~~~~~l~~~L~dGvvLC~L~N~l~P~~v~~~~i~~~~~~~~f~~~eNI~~F 80 (130)
|.++.++|++.||+.+.+.... | +.+|.+.|+|||+||++.|...|+.|.|++. +| +|.++|||+.|
T Consensus 10 ~~~~~~kev~~Wie~~l~~k~~-------p-pgdll~~lkdGv~lCril~ea~~~~I~yKeS----km-pFVQmenIs~F 76 (178)
T COG5199 10 GMDKQQKEVTLWIETVLGEKFE-------P-PGDLLSLLKDGVRLCRILNEASPLDIKYKES----KM-PFVQMENISSF 76 (178)
T ss_pred CCHHHHHHHHHHHHHHHHhhhC-------C-cccHHHHHhcchHHHHHHhhcCcccceeccc----CC-ceeeHHHHHHH
Confidence 5689999999999999887764 2 2599999999999999999999999977654 34 79999999999
Q ss_pred HHHHHhhcCCCccCCCCccccccccChHHHHHHHHHHhCchhhhhh
Q psy6172 81 IQICRNYFDIAENDLFEPSMLFDFGDFFKVLHTLSKLSLCPKVQKQ 126 (130)
Q Consensus 81 l~~c~~~~Gl~~~~lF~~~DL~e~~n~~~V~~~L~~L~~~~~~~~~ 126 (130)
|...++ ++||+.++|||.||||.+|..+|+.||++|||++.-..+
T Consensus 77 in~~~k-~~vpe~elFQT~DLFE~kd~~qV~~~l~slSRya~K~~~ 121 (178)
T COG5199 77 INGLKK-LRVPEYELFQTNDLFEAKDLRQVVICLYSLSRYAQKERM 121 (178)
T ss_pred HHHHHH-hCCCHHHHHHhhhHHhhcCHHHHHHHHHHHHHHHHHhcC
Confidence 999995 999999999999999999999999999999999754433
No 4
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=99.88 E-value=7.6e-23 Score=137.49 Aligned_cols=104 Identities=26% Similarity=0.423 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhcCCCCCCccccccccHhhHHHHccchHHHHHHhhhhcCCCCCcccccCCcccchhhhhhhHHHHHHHH
Q psy6172 5 LWRECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQIC 84 (130)
Q Consensus 5 ~e~e~~~WI~~~~~~~~~~~~~~~~~~~~~l~~~L~dGvvLC~L~N~l~P~~v~~~~i~~~~~~~~f~~~eNI~~Fl~~c 84 (130)
.++++.+||++....... +...+|.++|+||++||+|+|.+.|+.++....+ |. ..|.+++||+.|+++|
T Consensus 2 ~~~~l~~Win~~l~~~~~-------~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~--~~-~~~~~~~Ni~~~l~~~ 71 (107)
T cd00014 2 QKEELLRWINKVLGEYGP-------VTINNFSTDLKDGIALCKLLNSLSPDLIDKKKIN--PL-SRFKRLENINLALNFA 71 (107)
T ss_pred hHHHHHHHHHHHhccCCC-------ccHHHHHHHHhchHHHHHHHHHHCcccccccccc--cc-chhhHHHHHHHHHHHH
Confidence 578999999999876542 2468999999999999999999999999744332 33 3799999999999999
Q ss_pred HhhcCCCccCCCCccccccccChHHHHHHHHHHhCc
Q psy6172 85 RNYFDIAENDLFEPSMLFDFGDFFKVLHTLSKLSLC 120 (130)
Q Consensus 85 ~~~~Gl~~~~lF~~~DL~e~~n~~~V~~~L~~L~~~ 120 (130)
++ +|++.. +|+++||++.+|..+|+.||++|.++
T Consensus 72 ~~-~gi~~~-~~~~~Dl~~~~n~~~vl~~l~~l~~~ 105 (107)
T cd00014 72 EK-LGVPVV-NFDAEDLVEDGDEKLVLGLLWSLIRK 105 (107)
T ss_pred HH-cCCcee-ccCHHHHhhCCCceeeHHHHHHHHHh
Confidence 95 999988 89999999999999999999999865
No 5
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=99.84 E-value=9.3e-21 Score=126.19 Aligned_cols=101 Identities=26% Similarity=0.422 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhcCCCCCCccccccccHhhHHHHccchHHHHHHhhhhcCCCCCcccccCCcccchhhhhhhHHHHHHHHH
Q psy6172 6 WRECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICR 85 (130)
Q Consensus 6 e~e~~~WI~~~~~~~~~~~~~~~~~~~~~l~~~L~dGvvLC~L~N~l~P~~v~~~~i~~~~~~~~f~~~eNI~~Fl~~c~ 85 (130)
++++.+|+++.+....+ ....+|.+.|+||++||+|+|.+.|+.++.+.+. +|. +.|++++|++.|+++|+
T Consensus 2 ~~~l~~Win~~l~~~~~-------~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~-~~~-~~~~~~~Ni~~~l~~~~ 72 (103)
T smart00033 2 EKTLLRWVNSLLAEYGK-------PPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKVN-ASL-SRFKKIENINLALSFAE 72 (103)
T ss_pred hHHHHHHHHHHcccCCC-------CcHHHHHHHHccHHHHHHHHHHHCCCcCChhhcc-ccc-cHHHHHHhHHHHHHHHH
Confidence 67899999998865421 3567999999999999999999999999854443 333 37999999999999999
Q ss_pred hhcCCCccCCCCccccccc-cChHHHHHHHHHH
Q psy6172 86 NYFDIAENDLFEPSMLFDF-GDFFKVLHTLSKL 117 (130)
Q Consensus 86 ~~~Gl~~~~lF~~~DL~e~-~n~~~V~~~L~~L 117 (130)
+ +|. ...+|+++||+++ +++..|+.||+.+
T Consensus 73 ~-~g~-~~~~~~~~Dl~~~~k~~~~v~~~l~~~ 103 (103)
T smart00033 73 K-LGG-KLVLFEPEDLVEGNKLILGVIWTLILL 103 (103)
T ss_pred H-cCC-eeeccCHHHHhhcchHHHHHHHHHHhC
Confidence 5 884 4568999999999 6999999999864
No 6
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=99.80 E-value=1.5e-19 Score=121.35 Aligned_cols=106 Identities=27% Similarity=0.418 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhcCCCCCCccccccccHhhHHHHccchHHHHHHhhhhcCCCCCcccccCCcccchhhhhhhHHHHHHHHH
Q psy6172 6 WRECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICR 85 (130)
Q Consensus 6 e~e~~~WI~~~~~~~~~~~~~~~~~~~~~l~~~L~dGvvLC~L~N~l~P~~v~~~~i~~~~~~~~f~~~eNI~~Fl~~c~ 85 (130)
|+++..||++.+... +. .....+|.+.|+||++||+|+|++.|+.++.++++..++ +.|.+++|++.|+++|+
T Consensus 1 e~~ll~Win~~l~~~-~~-----~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~~~-~~~~~~~Ni~~~l~~~~ 73 (108)
T PF00307_consen 1 EKELLKWINSHLEKY-GK-----GRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPNLK-SPFDKLENIELALEAAE 73 (108)
T ss_dssp HHHHHHHHHHHHTTS-TT-----TSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTSSS-SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcccc-cC-----CCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhccccch-hhhHHHHHHHHHHHHHH
Confidence 688999999998654 11 123459999999999999999999999998777732222 57999999999999999
Q ss_pred hhcCCCccCCCCccccccccChHHHHHHHHHHhCc
Q psy6172 86 NYFDIAENDLFEPSMLFDFGDFFKVLHTLSKLSLC 120 (130)
Q Consensus 86 ~~~Gl~~~~lF~~~DL~e~~n~~~V~~~L~~L~~~ 120 (130)
+.+|++.. ++++||++..|...|+.+|.+|.++
T Consensus 74 ~~lg~~~~--~~~~dl~~~~~~~~vl~~l~~l~~~ 106 (108)
T PF00307_consen 74 KKLGIPPL--LSPEDLVEKGDEKSVLSFLWQLFRY 106 (108)
T ss_dssp HHTTSSCT--S-HHHHHSTT-HHHHHHHHHHHHHH
T ss_pred HHcCCCCC--CCHHHHHHCcCHHHHHHHHHHHHHH
Confidence 55999975 4999999988999999999998754
No 7
>KOG2128|consensus
Probab=99.78 E-value=2.4e-19 Score=159.98 Aligned_cols=101 Identities=19% Similarity=0.270 Sum_probs=87.4
Q ss_pred HHHHHHHHHhcCCCCCCccccccccHhhHHHHccchHHHHHHhhhhcCCCCCcccccCCcccchhhhhhhHHHHHHHHHh
Q psy6172 7 RECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRN 86 (130)
Q Consensus 7 ~e~~~WI~~~~~~~~~~~~~~~~~~~~~l~~~L~dGvvLC~L~N~l~P~~v~~~~i~~~~~~~~f~~~eNI~~Fl~~c~~ 86 (130)
.|++.||++|++++.+ +..+|.+.|||||+|.+|.|.+.|+.-. .+..... .+|++.+||+.|+++..
T Consensus 45 eE~k~W~e~cl~edL~--------pttele~~LRNGV~LAkL~~~f~PD~~~--~~~~~~~-~~frHtdNi~q~~~~me- 112 (1401)
T KOG2128|consen 45 EEAKRWIEECLGEDLP--------PTTELEEGLRNGVYLAKLGQFFAPDLEQ--TIYKAND-LHFRHTDNINQWLRAME- 112 (1401)
T ss_pred HHHHHHHHHHhcccCC--------CchHHHHHhhhhhHHHHHHhhcCCccee--eeeecCC-ceeecchhHHHHHHHHh-
Confidence 4899999999998864 2359999999999999999999997542 3433322 36999999999999999
Q ss_pred hcCCCccCCCCccccccccChHHHHHHHHHHhCc
Q psy6172 87 YFDIAENDLFEPSMLFDFGDFFKVLHTLSKLSLC 120 (130)
Q Consensus 87 ~~Gl~~~~lF~~~DL~e~~n~~~V~~~L~~L~~~ 120 (130)
++|+|+...|++.|+||+||++ |+.||+||+.+
T Consensus 113 ~iglP~iF~~E~~Dvy~~kN~p-~i~cihaLs~~ 145 (1401)
T KOG2128|consen 113 SIGLPEIFYPETTDVYEGKNIP-VIYCIHALSLY 145 (1401)
T ss_pred hcCCCcccccchhhhhcCCCCc-eeeHHHHHHHH
Confidence 5999999999999999999999 99999999854
No 8
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=99.77 E-value=2.9e-19 Score=153.76 Aligned_cols=103 Identities=19% Similarity=0.249 Sum_probs=91.9
Q ss_pred HHHHHHHHHhcCCCCCCccccccccHhhHHHHccchHHHHHHhhhhcCCCCCcccccCCcccchhhhhhhHHHHHHHHHh
Q psy6172 7 RECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRN 86 (130)
Q Consensus 7 ~e~~~WI~~~~~~~~~~~~~~~~~~~~~l~~~L~dGvvLC~L~N~l~P~~v~~~~i~~~~~~~~f~~~eNI~~Fl~~c~~ 86 (130)
.|++.||+++++++.+ ...|.+.||+||+|.+|.+++.|+.+. .|....+ .+|++.+||+.|++...
T Consensus 47 ~EaK~WIee~~~~~l~---------~~~fe~slRnGV~La~l~q~f~pd~~~--~iF~~~~-LQfrHtdNIN~Fld~i~- 113 (1054)
T COG5261 47 SEAKIWIEEVIEEALP---------ELCFEDSLRNGVFLAKLTQRFNPDLTT--VIFPADK-LQFRHTDNINAFLDLIE- 113 (1054)
T ss_pred HHHHHHHHHHhccCCc---------hhhHHHHHhccchHHHHHHHhCCCcee--Eeeeccc-ceeeccccHHHHHhHhh-
Confidence 4889999999987763 359999999999999999999999885 6654434 48999999999999999
Q ss_pred hcCCCccCCCCccccccccChHHHHHHHHHHhCchh
Q psy6172 87 YFDIAENDLFEPSMLFDFGDFFKVLHTLSKLSLCPK 122 (130)
Q Consensus 87 ~~Gl~~~~lF~~~DL~e~~n~~~V~~~L~~L~~~~~ 122 (130)
++|+|+..-|+..||||+||++||+.||++|+.+-.
T Consensus 114 ~vGlPe~FhFEl~DlYekKN~pkViyciHaL~~~ls 149 (1054)
T COG5261 114 HVGLPESFHFELQDLYEKKNIPKVIYCIHALISMLS 149 (1054)
T ss_pred hcCCcceeeeehHhhhccCCcchhHHHHHHHHHHhc
Confidence 699999999999999999999999999999987753
No 9
>KOG0532|consensus
Probab=99.73 E-value=7.7e-18 Score=141.32 Aligned_cols=90 Identities=31% Similarity=0.525 Sum_probs=78.3
Q ss_pred HhhHHHHccchHHHHHHhhhhcCCCCCcccccC--CcccchhhhhhhHHHHHHHHHhhcCCCccCCCCccccccc--cCh
Q psy6172 32 MSDLALTLRDGVVICNLLNNLDPACIDMREVNQ--KPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDF--GDF 107 (130)
Q Consensus 32 ~~~l~~~L~dGvvLC~L~N~l~P~~v~~~~i~~--~~~~~~f~~~eNI~~Fl~~c~~~~Gl~~~~lF~~~DL~e~--~n~ 107 (130)
..||..+|.|||+||+|+|.++|.+|+...+-. .|+.+.-+|+.|+.+||+|||+ +|||+.+++.+.|+..+ +++
T Consensus 594 p~Dl~aALtDGViLChLaN~lRPRSV~SIHVPSPaV~klsmarcrrNVdnFLeaCRk-iGVpEa~lCS~~Dilq~~~r~~ 672 (722)
T KOG0532|consen 594 PEDLAAALTDGVILCHLANHLRPRSVASIHVPSPAVPKLSMARCRRNVDNFLEACRK-IGVPEADLCSPMDILQKIERNP 672 (722)
T ss_pred chhHHHHhhcchhhHhhhcccCCCCccceecCCCccchhHHHHHHHhHHHHHHHHHH-cCCChHhhcCHHHhhhhhcccc
Confidence 369999999999999999999999987333321 1355668999999999999995 99999999999999999 899
Q ss_pred HHHHHHHHHHhCchh
Q psy6172 108 FKVLHTLSKLSLCPK 122 (130)
Q Consensus 108 ~~V~~~L~~L~~~~~ 122 (130)
.+|..++..++..+.
T Consensus 673 rk~~~t~~~~~~~a~ 687 (722)
T KOG0532|consen 673 RKVARTVLTVGKKAQ 687 (722)
T ss_pred hhHHHHHHhhccccC
Confidence 999999999987754
No 10
>KOG0046|consensus
Probab=99.47 E-value=2.6e-14 Score=118.72 Aligned_cols=102 Identities=21% Similarity=0.247 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHHHhcCCCCCCccccc-cccHhhHHHHccchHHHHHHhhhhcCCCCCcccccCCcccchhhhhhhHHHHH
Q psy6172 3 DDLWRECAAWLTRCGVLREDHKANWS-EASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFI 81 (130)
Q Consensus 3 ~~~e~e~~~WI~~~~~~~~~~~~~~~-~~~~~~l~~~L~dGvvLC~L~N~l~P~~v~~~~i~~~~~~~~f~~~eNI~~Fl 81 (130)
.++-++...||++.++.+.+.++.+| +|+.++|++.++||++||+|+|.-.||+|+-+.||......+|.+.||.+..|
T Consensus 118 eeEk~~fv~hIN~~L~~Dpdl~~~lPinp~t~~lf~~vkDGvlLcKlIN~svPdTIDERaiN~kk~Lnp~~~~EN~~l~l 197 (627)
T KOG0046|consen 118 EEEKRAFVNHINSYLEGDPDLKHLLPINPNTNDLFDLVKDGVLLCKLINLSVPDTIDERAINTKKKLNPFERNENLNLAL 197 (627)
T ss_pred HHHHHHHHHHHHHHhcCCcchhhcCCCCCchHHHHHHhccceeeehhhcccCCCchhhhhhccCCcCChhhhccchhhHH
Confidence 45566889999999999988888888 88999999999999999999999999999988898665667899999999999
Q ss_pred HHHHhhcCCCccCCCCccccccccC
Q psy6172 82 QICRNYFDIAENDLFEPSMLFDFGD 106 (130)
Q Consensus 82 ~~c~~~~Gl~~~~lF~~~DL~e~~n 106 (130)
..|+. +|+.... +.+.||.||+.
T Consensus 198 nSAkA-iGc~VvN-Iga~Dl~eGrp 220 (627)
T KOG0046|consen 198 NSAKA-IGCTVVN-IGAQDLAEGRP 220 (627)
T ss_pred hhccc-ccceEEe-cCchhhhcCCc
Confidence 99995 9999887 79999999985
No 11
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=99.29 E-value=4.8e-12 Score=83.25 Aligned_cols=75 Identities=23% Similarity=0.415 Sum_probs=67.6
Q ss_pred cccHhhHHHHccchHHHHHHhhhhcCCCCCcccccCCcccchhhhhhhHHHHHHHHHhhcCCCccCCCCccccccc
Q psy6172 29 EASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDF 104 (130)
Q Consensus 29 ~~~~~~l~~~L~dGvvLC~L~N~l~P~~v~~~~i~~~~~~~~f~~~eNI~~Fl~~c~~~~Gl~~~~lF~~~DL~e~ 104 (130)
.+.+++|...++||++||.|++...|+.+++..|+.+++++.+.++.|+..|.++|.+++|.+...+ +++|++..
T Consensus 10 ~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~~mS~~~~l~N~~ll~~~c~~~l~~~~~~l-~~edl~~~ 84 (85)
T PF11971_consen 10 FPPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKTTMSQADSLYNLQLLNSFCQSHLGFSCCHL-EPEDLLYV 84 (85)
T ss_pred CcchhhhhhhhccHHHHHHHHHHhCcceecHhHcccccchHHHHhhhhHHHHHHHHHHHcCCCcCcC-CHHHHhcC
Confidence 3578999999999999999999999999999899877888899999999999999998889988764 88888753
No 12
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain.
Probab=98.98 E-value=1.8e-09 Score=71.39 Aligned_cols=84 Identities=26% Similarity=0.490 Sum_probs=67.6
Q ss_pred HhhHHHHccchHHHHHHhhhhcCCCCCcccccCCcccchhhhhhhHHHHHHHHHhhcCCCccCCCCcccccccc--ChHH
Q psy6172 32 MSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDFG--DFFK 109 (130)
Q Consensus 32 ~~~l~~~L~dGvvLC~L~N~l~P~~v~~~~i~~~~~~~~f~~~eNI~~Fl~~c~~~~Gl~~~~lF~~~DL~e~~--n~~~ 109 (130)
+..+.+.+|-|.=||.|.|++.|..- . .|+..+....=.|...|-.|+.+|+.++|+++.++|...|||... ++.|
T Consensus 3 Vt~LW~~fr~G~PLc~lfNal~p~~~-L-~v~~~~~~~~k~~K~ai~~Fi~ack~~L~~~~~e~FtIsdl~~~dT~gfvK 80 (89)
T PF06395_consen 3 VTQLWKLFRQGYPLCVLFNALQPEEP-L-PVDPVSSDDLKVCKKAIYKFIQACKQELGFPDEELFTISDLYGDDTNGFVK 80 (89)
T ss_pred HHHHHHHHhCcCcHHHHHHccCCccC-C-CCCCCCcchHHHHHHHHHHHHHHHHHhcCCCccceeeeeccccCCCcchhh
Confidence 46899999999999999999999742 1 343222222347888999999999988999999999999999865 6899
Q ss_pred HHHHHHHH
Q psy6172 110 VLHTLSKL 117 (130)
Q Consensus 110 V~~~L~~L 117 (130)
|+.++..+
T Consensus 81 Vi~~V~~v 88 (89)
T PF06395_consen 81 VIKVVNRV 88 (89)
T ss_pred HHHHHHhh
Confidence 99887654
No 13
>KOG0046|consensus
Probab=98.85 E-value=5.9e-09 Score=87.20 Aligned_cols=91 Identities=20% Similarity=0.346 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccHhhHHHHccchHHHHHHhhhhcCCCCCcccccCCc--ccchhhhhhhHHHHH
Q psy6172 4 DLWRECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKP--QLAQFLCLRNIRIFI 81 (130)
Q Consensus 4 ~~e~e~~~WI~~~~~~~~~~~~~~~~~~~~~l~~~L~dGvvLC~L~N~l~P~~v~~~~i~~~~--~~~~f~~~eNI~~Fl 81 (130)
-.||-.+.||+++++.+ .+.++++.|+||.||.++..++.||.|.|++++.+| -...|+..||++..+
T Consensus 388 reer~fr~WmNSlgv~p----------~vn~~f~Dl~dglVllq~~dki~pg~Vnwk~vnKp~~~~~~~~kklENcNyav 457 (627)
T KOG0046|consen 388 REERTFRLWMNSLGVNP----------YVNNLFEDLRDGLVLLQLYDKVSPGSVNWKHVNKPPSPLKMPFKKVENCNYAV 457 (627)
T ss_pred HHHHHHHHHHHhcCCcH----------HHHHHHHhhhhhhHHHHHHHHccCCccchhhccCCCCcccccHHHhhcchHHH
Confidence 45677889999987643 568999999999999999999999999999998764 223599999999999
Q ss_pred HHHHhhcCCCccCCCCccccccccC
Q psy6172 82 QICRNYFDIAENDLFEPSMLFDFGD 106 (130)
Q Consensus 82 ~~c~~~~Gl~~~~lF~~~DL~e~~n 106 (130)
+-.+. .+.+-.. ....||++|..
T Consensus 458 ~lGk~-~~FSLVg-i~G~DI~dGNk 480 (627)
T KOG0046|consen 458 KLGKQ-LKFSLVG-IAGQDIVDGNK 480 (627)
T ss_pred HHHhh-cceeeec-cccccccccch
Confidence 99984 8888775 78999999974
No 14
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=97.54 E-value=0.00031 Score=59.03 Aligned_cols=92 Identities=18% Similarity=0.203 Sum_probs=63.2
Q ss_pred HHHHHHHHhcCCCCCCccccccccHhhHHHHccchHHHHHHhhhhcCCCCCcccccCC---cccchhhhhhhHHHHHHHH
Q psy6172 8 ECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQK---PQLAQFLCLRNIRIFIQIC 84 (130)
Q Consensus 8 e~~~WI~~~~~~~~~~~~~~~~~~~~~l~~~L~dGvvLC~L~N~l~P~~v~~~~i~~~---~~~~~f~~~eNI~~Fl~~c 84 (130)
|...-++.+.--+.+.....|..+..+|++..|||.++|+|+|..+|+++.....+.. ....-|++.||-+.|+...
T Consensus 123 elt~~~~lllwc~~~t~~y~p~vd~~df~rswrdGLaf~aLIh~~rPDtld~n~ld~qkknk~~n~~qafe~a~k~Igi~ 202 (612)
T COG5069 123 ELTKHINLLLWCDEDTGGYKPEVDTFDFFRSWRDGLAFSALIHDSRPDTLDPNVLDLQKKNKALNNFQAFENANKVIGIA 202 (612)
T ss_pred hHHhhhhhheeccccccCcCCCccHHHHHHHhhhhHHHHHHHhhcCCcccCccccchhhcccchhHHHHHHHHHHhhchH
Confidence 5555555554333333323355678899999999999999999999998864443311 1123599999999999999
Q ss_pred HhhcCCCccCCCCccc
Q psy6172 85 RNYFDIAENDLFEPSM 100 (130)
Q Consensus 85 ~~~~Gl~~~~lF~~~D 100 (130)
|. +|+-+..=....|
T Consensus 203 rl-i~vedivnV~~pD 217 (612)
T COG5069 203 RL-IGVEDIVNVSIPD 217 (612)
T ss_pred hh-cCcceeeecCCcc
Confidence 95 9976443333344
No 15
>KOG0517|consensus
Probab=97.38 E-value=0.00048 Score=65.02 Aligned_cols=84 Identities=18% Similarity=0.320 Sum_probs=67.4
Q ss_pred HHHHHHHHhcCCCCCCccccccccHhhHHHHccchHHHHHHhhhhcCCCCCcccccCCcccchhhhhhhHHHHHHHHHhh
Q psy6172 8 ECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRNY 87 (130)
Q Consensus 8 e~~~WI~~~~~~~~~~~~~~~~~~~~~l~~~L~dGvvLC~L~N~l~P~~v~~~~i~~~~~~~~f~~~eNI~~Fl~~c~~~ 87 (130)
....|+++.++.-.- ...||+..|+||+.|.+|+..|.....| +.+ +.+| ..+|+||++..|++.++
T Consensus 52 TFTKWvNShL~rv~c--------~I~DLy~DlrDG~~LlkLLEvlSGE~Lp--kPt-rGRM-RIH~LENvdKaLqFLke- 118 (2473)
T KOG0517|consen 52 TFTKWVNSHLARVSC--------RIGDLYTDLRDGIMLLKLLEVLSGERLP--KPT-RGRM-RIHCLENVDKALQFLKE- 118 (2473)
T ss_pred hHHHHHHHHHHHhcc--------hhHHHHHHHhhhHHHHHHHHHHccccCC--CCC-CCce-eehhHhhhHHHHHHHHh-
Confidence 456899998753321 3579999999999999999999987776 443 2345 78999999999999995
Q ss_pred cCCCccCCCCcccccccc
Q psy6172 88 FDIAENDLFEPSMLFDFG 105 (130)
Q Consensus 88 ~Gl~~~~lF~~~DL~e~~ 105 (130)
-.|+-.. ..+.|+.+|.
T Consensus 119 qkVhLEn-iGshDIVDGN 135 (2473)
T KOG0517|consen 119 QKVHLEN-IGSHDIVDGN 135 (2473)
T ss_pred ccccccc-CCcccccCCc
Confidence 7777664 7999999996
No 16
>KOG3631|consensus
Probab=97.18 E-value=0.0021 Score=50.74 Aligned_cols=106 Identities=17% Similarity=0.210 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccHhhHHHHccchHHHHHHhhhhcCCCCCcccccCCcccchhhhhhhHHHHHHH
Q psy6172 4 DLWRECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQI 83 (130)
Q Consensus 4 ~~e~e~~~WI~~~~~~~~~~~~~~~~~~~~~l~~~L~dGvvLC~L~N~l~P~~v~~~~i~~~~~~~~f~~~eNI~~Fl~~ 83 (130)
|.-.-+.+||++.++...- -+.++.+.|-||.||-+|..++..-.+...+|.. +.-.+..-+...+++
T Consensus 90 el~kvLi~WiN~~L~~erI--------vVr~LeEDlfDGqilqkL~ekL~~~klev~evtq----se~~QkqKLq~Vlea 157 (365)
T KOG3631|consen 90 ELVKVLIDWINDVLVPERI--------VVRSLEEDLFDGQILQKLFEKLAALKLEVAEVTQ----SEIGQKQKLQTVLEA 157 (365)
T ss_pred HHHHHHHHHHHHhhcchhh--------hHHhhHHhhhhhHHHHHHHHHHHhhhccchhhhh----hhHHHHHHHHHHHHH
Confidence 3444567999998764421 3569999999999999999999865543333332 256777888889999
Q ss_pred HHhhcCCCccCCCCccccccccChHHHHHHHHHHhCch
Q psy6172 84 CRNYFDIAENDLFEPSMLFDFGDFFKVLHTLSKLSLCP 121 (130)
Q Consensus 84 c~~~~Gl~~~~lF~~~DL~e~~n~~~V~~~L~~L~~~~ 121 (130)
....+++|+...==..|...+||+..+++-|.+|+..-
T Consensus 158 vnr~L~~~~~q~kWsvdsIh~Kdl~ailhLLVaLa~~f 195 (365)
T KOG3631|consen 158 VNRSLQLPEWQAKWSVDSIHNKDLVAILHLLVALAKHF 195 (365)
T ss_pred HHHHhcCchhhhccchhhhccchHHHHHHHHHHHHHHc
Confidence 98889999887777889999999999999999998653
No 17
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=95.48 E-value=0.018 Score=48.68 Aligned_cols=91 Identities=16% Similarity=0.205 Sum_probs=65.0
Q ss_pred ChHHHHHHH---HHHHHhcCCCCCCccccccccHhhHHHHccchHHHHHHhhhhc-CCCCCcccccCCcc----cchhhh
Q psy6172 2 SDDLWRECA---AWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLD-PACIDMREVNQKPQ----LAQFLC 73 (130)
Q Consensus 2 ~~~~e~e~~---~WI~~~~~~~~~~~~~~~~~~~~~l~~~L~dGvvLC~L~N~l~-P~~v~~~~i~~~~~----~~~f~~ 73 (130)
|.+-|+|++ -|++++.+.+ +..+|+..+|||.+|.+...+.. |++|.++.++..|. ++.|+.
T Consensus 374 d~e~efear~~Tf~l~~~~vsp----------~i~~l~gd~Rdql~~lq~l~k~l~p~tv~~~~vk~~~asG~E~~rfka 443 (612)
T COG5069 374 DAEGEFEARVFTFWLNSLDVSP----------EITNLFGDLRDQLILLQALSKKLMPMTVTHKLVKKQPASGIEENRFKA 443 (612)
T ss_pred chhhHHHHHHHHHHHHHhcCCh----------hhhhhcccHHHHHHHHHHHHhhcCCceechhhhcccccccchhhhhhh
Confidence 345666665 7998876533 45799999999999988776655 99999888886663 347999
Q ss_pred hhhHHHHHHHHHhhcCCCccCCCCccccccc
Q psy6172 74 LRNIRIFIQICRNYFDIAENDLFEPSMLFDF 104 (130)
Q Consensus 74 ~eNI~~Fl~~c~~~~Gl~~~~lF~~~DL~e~ 104 (130)
.||.+.-.+.-+. -|+.-.. .+.-|..++
T Consensus 444 ~en~nyavdlG~~-~gf~~v~-ik~le~~~~ 472 (612)
T COG5069 444 FENENYAVDLGIT-EGFSLVG-IKGLEILDG 472 (612)
T ss_pred hcccchhhhhhhh-cCeeeee-echhhhhhh
Confidence 9999998877773 6655443 233344443
No 18
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=95.12 E-value=0.037 Score=40.20 Aligned_cols=93 Identities=14% Similarity=0.216 Sum_probs=55.7
Q ss_pred HHHHHHHhcCCCCCCccccccccHhhHHHHccchHHHHHHhhhhcCCCCCcccccCCcccchhhhhhhHHHH-HHHHHhh
Q psy6172 9 CAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIF-IQICRNY 87 (130)
Q Consensus 9 ~~~WI~~~~~~~~~~~~~~~~~~~~~l~~~L~dGvvLC~L~N~l~P~~v~~~~i~~~~~~~~f~~~eNI~~F-l~~c~~~ 87 (130)
+..||.++. ++. ...++...+.||+++++++....|..|++... ++..+.-..+.|-..| -+..++
T Consensus 1 l~~WL~~l~-ls~---------~~~n~~rDfsdG~lvAEIl~~y~p~~vdlh~y--~~~~s~~~Kl~NW~~Ln~kvl~k- 67 (158)
T PF06294_consen 1 LLKWLQSLD-LSR---------PPKNIRRDFSDGYLVAEILSRYYPKLVDLHNY--SNGNSVAQKLNNWETLNEKVLKK- 67 (158)
T ss_dssp HHHHHHHS---S-----------SS-HHHHHTTSHHHHHHHHHH-TTT---SS------SSHHHHHHHHHHHHHHTTGG-
T ss_pred ChHHHhcCC-CCC---------CCCchHHHcccccHHHHHHHHHCCCCcccccc--CCCCCHHHHHHHHHHHHHHHHHH-
Confidence 357999832 222 23588889999999999999999999864333 3333456788999999 888884
Q ss_pred cCCCccCCCCccccc---ccc--ChHHHHHHHHHHh
Q psy6172 88 FDIAENDLFEPSMLF---DFG--DFFKVLHTLSKLS 118 (130)
Q Consensus 88 ~Gl~~~~lF~~~DL~---e~~--n~~~V~~~L~~L~ 118 (130)
+|++ |...++. .++ -...++..|+..-
T Consensus 68 l~~~----l~~~~i~~i~~~~~Gaae~lL~~L~~~l 99 (158)
T PF06294_consen 68 LGIK----LDKEDIEGIINCKPGAAESLLYQLYTKL 99 (158)
T ss_dssp GT--------HHHHHHHHTT-TTTTHHHHHHHHHHH
T ss_pred cCCC----CCHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9986 5555443 333 3566777776554
No 19
>KOG3000|consensus
Probab=93.16 E-value=0.2 Score=39.99 Aligned_cols=83 Identities=19% Similarity=0.279 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCCCCCCccccccccHhhHHHHccchHHHHHHhhhhcCCCCCcccccCCcccchhhhhhhHHHHHHHHHh
Q psy6172 7 RECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRN 86 (130)
Q Consensus 7 ~e~~~WI~~~~~~~~~~~~~~~~~~~~~l~~~L~dGvvLC~L~N~l~P~~v~~~~i~~~~~~~~f~~~eNI~~Fl~~c~~ 86 (130)
.|+..|+++++-... .-.+.+..|-+-|+++.-+.|++|+.++++-..+. .+....|...+-..-+
T Consensus 18 ~E~laW~N~~l~~n~------------~kIEe~~tGaaycqlmd~l~p~~i~lkkVkf~A~~-Ehe~i~Nfk~lQ~~f~- 83 (295)
T KOG3000|consen 18 LEILAWINDLLQLNL------------TKIEELCTGAAYCQLMDMLFPPDIPLKKVKFAARL-EHEYIPNFKVLQTCFN- 83 (295)
T ss_pred HHHHHHHHhhhhcch------------hhhhhhcccchhhhhhhhccCCccccccccccccc-cchhhhhhHHHHHHHH-
Confidence 488999999864432 45677889999999999999999998887633322 3444555555444444
Q ss_pred hcCCCccCCCCcccccccc
Q psy6172 87 YFDIAENDLFEPSMLFDFG 105 (130)
Q Consensus 87 ~~Gl~~~~lF~~~DL~e~~ 105 (130)
.+|+.+ ....++|.-++
T Consensus 84 klgi~k--~v~vdkLvKg~ 100 (295)
T KOG3000|consen 84 KLGIDK--VVDVDKLVKGP 100 (295)
T ss_pred hcCCcc--cccHHHHhccc
Confidence 366654 34555555554
No 20
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=84.37 E-value=1.9 Score=38.07 Aligned_cols=73 Identities=16% Similarity=0.326 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHhcCCCCCCccccccccHhhHHHHccchHHHHHHhhhhcCCCCC--c-ccccCCcccchhhhhhhHHH
Q psy6172 3 DDLWRECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACID--M-REVNQKPQLAQFLCLRNIRI 79 (130)
Q Consensus 3 ~~~e~e~~~WI~~~~~~~~~~~~~~~~~~~~~l~~~L~dGvvLC~L~N~l~P~~v~--~-~~i~~~~~~~~f~~~eNI~~ 79 (130)
+++..-+..||+++. .+.+ ..=++.|.|||+|-+++..|.|.... | .+|+..+...--..+.|+..
T Consensus 6 ~~l~~~Lv~Wv~tf~-~~~~----------~~~~~dL~DGv~L~evL~qIDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~ 74 (713)
T PF05622_consen 6 MELCDSLVTWVQTFN-LSAP----------CSSYEDLSDGVALAEVLHQIDPEYFNDSWLSRIKEDVGDNWRLRVSNLKK 74 (713)
T ss_dssp -HHHHHHHHHHTT----SS-------------SHHHHTTSHHHHHHHHHH-TTTS-HHHHTT--SGGGG-SHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCC-CCCC----------cCCHHHccchHHHHHHHHHhCccccCcHHhhcCCCCCCccHHHHHHHHHH
Confidence 355667889998753 2221 23356899999999999999998653 1 23433332212335677777
Q ss_pred HHHHHHh
Q psy6172 80 FIQICRN 86 (130)
Q Consensus 80 Fl~~c~~ 86 (130)
-++....
T Consensus 75 l~~~i~~ 81 (713)
T PF05622_consen 75 LLRNIKS 81 (713)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776664
No 21
>KOG0035|consensus
Probab=76.59 E-value=2.1 Score=38.97 Aligned_cols=71 Identities=15% Similarity=0.381 Sum_probs=56.8
Q ss_pred cccHhhHHHHccchHHHHHHhhhhcCCCCC-cccccCCcccchhhhhhhHHHHHHHHHhhcCCCccCCCCccccccccCh
Q psy6172 29 EASMSDLALTLRDGVVICNLLNNLDPACID-MREVNQKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDFGDF 107 (130)
Q Consensus 29 ~~~~~~l~~~L~dGvvLC~L~N~l~P~~v~-~~~i~~~~~~~~f~~~eNI~~Fl~~c~~~~Gl~~~~lF~~~DL~e~~n~ 107 (130)
.+.+.+|...-+||..+|.+++..+|..|+ +.+.+ .=..++|++..-..+.+.+|++ .+..+.|..+....
T Consensus 160 ~v~v~nF~~sw~~gl~f~A~ih~~Rpdli~~y~~lt------~~~~~~n~~~A~~iAek~l~i~--r~ld~ed~~~~~~p 231 (890)
T KOG0035|consen 160 NVNVQNFHTSWKDGLAFCALIHRHRPDLIDQYDKLT------KQDPVENLNLAFDIAEKFLGIP--RLLDAEDIVEAAIP 231 (890)
T ss_pred ccccccceecccchHHHHHHHHhcChhhhhhhhhcC------ccchhHHhhhhhhhhhhcCCcc--cccCccccccCCCC
Confidence 346779999999999999999999999997 44332 2367889999888888668887 46899998887543
No 22
>KOG0517|consensus
Probab=75.23 E-value=4.1 Score=40.07 Aligned_cols=70 Identities=17% Similarity=0.338 Sum_probs=56.0
Q ss_pred ccccHhhHHHHccchHHHHHHhhhhcCCCCCcccccCCcccchhhhhhhHHHHHHHHHhhcCCCccCCCCcccccccc
Q psy6172 28 SEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDFG 105 (130)
Q Consensus 28 ~~~~~~~l~~~L~dGvvLC~L~N~l~P~~v~~~~i~~~~~~~~f~~~eNI~~Fl~~c~~~~Gl~~~~lF~~~DL~e~~ 105 (130)
|+....+|-.+=|||...-.|+.+=+|+-|++.+++ | -....|+++..+-+..++|++. +..|.|..-..
T Consensus 184 pnVNI~nFTtSWRdGLaFNALIHkHRPDLvDf~~L~--k----~na~~NL~~AFdvAE~~LGia~--LLDpEDV~v~~ 253 (2473)
T KOG0517|consen 184 PNVNITNFTTSWRDGLAFNALIHKHRPDLVDFDKLK--K----SNALYNLQHAFDVAEQELGIAK--LLDPEDVNVEQ 253 (2473)
T ss_pred CCcccccCccchhcchhHHHHHHhcCcchhhhcccC--C----CchhhHHHHHHHHHHHHcCchh--cCCHhhcCccC
Confidence 566788999999999999999999999999876664 2 2567788776666666799994 78888886544
No 23
>KOG3631|consensus
Probab=69.05 E-value=13 Score=29.72 Aligned_cols=71 Identities=13% Similarity=0.236 Sum_probs=56.4
Q ss_pred cHhhHHHHccchHHHHHHhhhhcCCCCCcccccCCcccchhhhhhhHHHHHHHHHhhcCCCccCCCCccccccc
Q psy6172 31 SMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDF 104 (130)
Q Consensus 31 ~~~~l~~~L~dGvvLC~L~N~l~P~~v~~~~i~~~~~~~~f~~~eNI~~Fl~~c~~~~Gl~~~~lF~~~DL~e~ 104 (130)
++.++-....|||+|.-|+-.+..=.++....+..|+. .-...-|++..++-+++ =|+..-. -.+.|+..+
T Consensus 276 eVt~LdtQFaDGV~LvLL~GlLEgyFvpL~~F~Ltp~S-~eekv~NVsfAfeLm~D-~GL~kp~-~rpeDIvN~ 346 (365)
T KOG3631|consen 276 EVTELDTQFADGVYLVLLMGLLEGYFVPLHHFYLTPNS-FEEKVHNVSFAFELMKD-GGLEKPK-VRPEDIVNK 346 (365)
T ss_pred eeehhhhhhccchHHHHHHHhhccceeecceeecCCCC-HHHHHHHHHHHHHHHHc-cCcCCCC-CChHHhhcc
Confidence 45577888999999999999888667877778777763 44667999999999997 8887653 578888765
No 24
>cd08539 SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators. SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=67.13 E-value=5.5 Score=25.43 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCCCCCCccccccccHhhHHHHccchHHHHHHhh
Q psy6172 7 RECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLN 50 (130)
Q Consensus 7 ~e~~~WI~~~~~~~~~~~~~~~~~~~~~l~~~L~dGvvLC~L~N 50 (130)
.++.+||.-......- +....+|.....||--||.+..
T Consensus 11 ~~V~~WL~~~~~~~~~------~~~~i~~~~F~MnG~~LC~ms~ 48 (74)
T cd08539 11 YQVWEWLQHLLDTNQL------DASCIPFQEFDINGEHLCSMSL 48 (74)
T ss_pred HHHHHHHHHHHHHcCC------CcccccHHHcCCChHHHHccCH
Confidence 5788999877433221 1234588888999999999864
No 25
>cd08537 SAM_PNT-ESE-1-like Sterile alpha motif (SAM)/Pointed domain of ESE-1 like ETS transcriptional regulators. SAM Pointed domain of ESE-1-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. SAM Pointed domain of ESE-1 provides a potential docking site for signaling kinase Pak1 in humans. ESE-1 factors are involved in regulation of gene expression in different types of epithelial cells. ESE-1 is expressed in many different organs including intestine, stomach, pancreas, lungs, kidneys, and prostate. The DNA binding consensus motif for ESE-1 consists of a purine-rich GGA[AT] core sequence. The expression profile of these factors is altered in epithelial cancers if compared to normal tissues. Members of this subfamily are potential targets for cancer therapy.
Probab=59.42 E-value=10 Score=24.42 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCCCCCccccccccHhhHHHHccchHHHHHHhh
Q psy6172 7 RECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLN 50 (130)
Q Consensus 7 ~e~~~WI~~~~~~~~~~~~~~~~~~~~~l~~~L~dGvvLC~L~N 50 (130)
.++.+||.-......- +....+|.....||--||.+..
T Consensus 16 ~qVleWL~~~~e~n~~------dl~~v~f~~F~MnG~~LC~l~~ 53 (78)
T cd08537 16 TQVLEWISYHVEKNKY------DASSIDFSRCDMDGATLCNCAL 53 (78)
T ss_pred HHHHHHHHHHHHhccC------CcccCCHHHhCCchHHHHccCH
Confidence 4788999877633211 1234588888999999999864
No 26
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=43.81 E-value=63 Score=22.63 Aligned_cols=41 Identities=12% Similarity=-0.031 Sum_probs=25.4
Q ss_pred HHHHHHHHhhcCCCccCCCCccccccccChHHHHHHHHHHh
Q psy6172 78 RIFIQICRNYFDIAENDLFEPSMLFDFGDFFKVLHTLSKLS 118 (130)
Q Consensus 78 ~~Fl~~c~~~~Gl~~~~lF~~~DL~e~~n~~~V~~~L~~L~ 118 (130)
..||+.-=-.+|+|........+--...|..+|+.||+.|-
T Consensus 4 ~~yiN~~L~s~G~~~~~~~~~~~~~~~~~~~~vin~i~~Ll 44 (151)
T PF11559_consen 4 IEYINQQLLSRGYPSDGLLFDSAEESEDNDVRVINCIYDLL 44 (151)
T ss_pred HHHHHHHHHHCCCCCCCccCcccccccccHHHHHHHHHHHH
Confidence 34444333358998775444333123458899999999884
No 27
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=42.74 E-value=23 Score=20.78 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCCCCCCccccccccHhhHHHHccchHHHHHHhh
Q psy6172 6 WRECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLN 50 (130)
Q Consensus 6 e~e~~~WI~~~~~~~~~~~~~~~~~~~~~l~~~L~dGvvLC~L~N 50 (130)
..++.+|+++++ .+ .....|.+..-||-.|+.|-.
T Consensus 5 ~~~V~~WL~~~~-l~---------~y~~~F~~~~i~g~~L~~lt~ 39 (64)
T PF00536_consen 5 VEDVSEWLKSLG-LE---------QYAENFEKNYIDGEDLLSLTE 39 (64)
T ss_dssp HHHHHHHHHHTT-GG---------GGHHHHHHTTSSHHHHTTSCH
T ss_pred HHHHHHHHHHCC-CH---------HHHHHHHcCCchHHHHHhcCH
Confidence 368999999864 22 245688888899999988643
No 28
>KOG1271|consensus
Probab=33.46 E-value=75 Score=24.26 Aligned_cols=88 Identities=16% Similarity=0.134 Sum_probs=53.3
Q ss_pred ChHHHHHHHHHHHHhcCCCCCCccccccc-cHhhHHHHccchHHHHHHhhhhcCCCCCcccccCCcccchhhhhhhHHHH
Q psy6172 2 SDDLWRECAAWLTRCGVLREDHKANWSEA-SMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIF 80 (130)
Q Consensus 2 ~~~~e~e~~~WI~~~~~~~~~~~~~~~~~-~~~~l~~~L~dGvvLC~L~N~l~P~~v~~~~i~~~~~~~~f~~~eNI~~F 80 (130)
+++.|..+.+|+....+... .. ..+ .+-|| .--||-+|-+|++.=.|+... -+..+++. -.--.||
T Consensus 44 g~~ae~riv~wl~d~~~~~r-v~---~~A~~VlDL--GtGNG~~L~~L~~egf~~~L~--GvDYs~~A--V~LA~ni--- 110 (227)
T KOG1271|consen 44 GEDAEERIVDWLKDLIVISR-VS---KQADRVLDL--GTGNGHLLFQLAKEGFQSKLT--GVDYSEKA--VELAQNI--- 110 (227)
T ss_pred CCcHHHHHHHHHHhhhhhhh-hc---ccccceeec--cCCchHHHHHHHHhcCCCCcc--ccccCHHH--HHHHHHH---
Confidence 45778889999988765211 00 001 22222 457999999999998887442 44444431 2223444
Q ss_pred HHHHHhhcCCCccCCCCccccccccC
Q psy6172 81 IQICRNYFDIAENDLFEPSMLFDFGD 106 (130)
Q Consensus 81 l~~c~~~~Gl~~~~lF~~~DL~e~~n 106 (130)
++ +-|++..--|+..|++..+.
T Consensus 111 ---Ae-~~~~~n~I~f~q~DI~~~~~ 132 (227)
T KOG1271|consen 111 ---AE-RDGFSNEIRFQQLDITDPDF 132 (227)
T ss_pred ---HH-hcCCCcceeEEEeeccCCcc
Confidence 34 47888755688888877643
No 29
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=32.64 E-value=36 Score=27.13 Aligned_cols=49 Identities=18% Similarity=0.390 Sum_probs=36.0
Q ss_pred HHHccchHHHHHHhhhhcCCCCCcccccCCcccchhhhhhhHHHHHHHHHhhcCCCccC
Q psy6172 36 ALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRNYFDIAEND 94 (130)
Q Consensus 36 ~~~L~dGvvLC~L~N~l~P~~v~~~~i~~~~~~~~f~~~eNI~~Fl~~c~~~~Gl~~~~ 94 (130)
++.+.|.-|||.|+++-.-.-|+ |+ -..-..|+..||+-|.+ ++|....
T Consensus 154 MD~FTD~dIf~DLleAa~kR~Vp---VY------iLLD~~~~~~Fl~Mc~~-~~v~~~~ 202 (284)
T PF07894_consen 154 MDVFTDVDIFCDLLEAANKRGVP---VY------ILLDEQNLPHFLEMCEK-LGVNLQH 202 (284)
T ss_pred eeccccHHHHHHHHHHHHhcCCc---EE------EEechhcChHHHHHHHH-CCCChhh
Confidence 45678889999999987555554 22 12345699999999995 9998654
No 30
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=31.72 E-value=53 Score=20.03 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCCCCCccccccccHhhHHHHccchHHHHHHhh
Q psy6172 7 RECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLN 50 (130)
Q Consensus 7 ~e~~~WI~~~~~~~~~~~~~~~~~~~~~l~~~L~dGvvLC~L~N 50 (130)
.++..||.-+..+ ... +. .++...-.||.-||.+-.
T Consensus 8 ~~V~~Wl~w~~~~-f~L----~~---~~~~~F~m~G~~Lc~ls~ 43 (66)
T cd08203 8 EHVLQWLEWAVKE-FSL----PP---IDFSKFNMNGKELCLLTK 43 (66)
T ss_pred HHHHHHHHHHHHh-cCC----CC---CChhhcCCCHHHHHhCCH
Confidence 4788999887542 111 11 233333889999999854
No 31
>PF03221 HTH_Tnp_Tc5: Tc5 transposase DNA-binding domain; InterPro: IPR006600 This entry represents a DNA-binding helix-turn-helix domain found in the pogo family of transposable elements, the centromere protein Cenp-B, and yeast PCD2. There is extensive sequence similarity between Cenp-B and transposase proteins encoded by the pogo superfamily of transposable elements, which includes the human Tigger and Jerky elements []. The HTH domain is composed of three alpha-helices, with the second and third helices connected via a turn comprise the helix-turn-helix motif. Helix 3 is termed the recognition helix as it binds the DNA major groove, as in other HTHs []. This conserved DNA-binding domain is found in the following proteins: Cenp-B (major centromere autoantigen B or centromere protein B), which appears to organise arrays of centromere satellite DNA into a higher order structure that then direct centromere formation and kinetochore assembly in mammalian chromosomes. The N terminus of Cenp-B contains two DNA-binding HTH domains, which bind to adjacent major grooves of DNA: a psq-type HTH domain followed by a CenpB-type HTH domain, which together bind specifically to the Cenp-B box, which occurs in alpha-satellite DNA in human centromeres []. Pogo family transposable elements includes both Tigger and Jerky elements []. Pogo contains two open reading frames flanked by inverted repeats. The N-terminal region of pogo transposase contains a Cenp-B-type HTH DNA-binding domain []. Mammalian jerky protein, involved in epileptic seizures in mice []. PDC2 (Pyruvate DeCarboxylase 2), which is a transcription factor required for the synthesis of the glycolytic enzyme pyruvate decarboxylase, required for high level expression of both the THI and the PDC genes. PDC2 may be important for a high basal level of PDC gene expression or play a positive role in the autoregulation control of PDC1 and PDC5 [, ]. ; PDB: 1HLV_A 1IUF_A.
Probab=31.41 E-value=63 Score=18.75 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHhcCCCC
Q psy6172 3 DDLWRECAAWLTRCGVLRE 21 (130)
Q Consensus 3 ~~~e~e~~~WI~~~~~~~~ 21 (130)
++.|+.+.+||.+......
T Consensus 2 ~~~E~~L~~wi~~~~~~g~ 20 (66)
T PF03221_consen 2 PELEKALVEWIKRMRRKGF 20 (66)
T ss_dssp HHHHHHHHHHHHHHCGCT-
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 6899999999999854443
No 32
>PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups []. The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A ....
Probab=29.63 E-value=1e+02 Score=17.74 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=20.4
Q ss_pred HHHHHHHHhhcCCCccCCCCccccccccChHHHHHH
Q psy6172 78 RIFIQICRNYFDIAENDLFEPSMLFDFGDFFKVLHT 113 (130)
Q Consensus 78 ~~Fl~~c~~~~Gl~~~~lF~~~DL~e~~n~~~V~~~ 113 (130)
-.+....++.+|+. +...++++..++..+...
T Consensus 35 ~~l~~~l~~~~g~~----i~~~~~~~~~ti~~l~~~ 66 (67)
T PF00550_consen 35 IELVSELEEEFGIK----IPPSDLFEHPTIRDLAEY 66 (67)
T ss_dssp HHHHHHHHHHHTSS----TTHHHHCTSSSHHHHHHH
T ss_pred HHHHHHHHHHHcCC----CCHHHHHcCCCHHHHHhH
Confidence 34444555467874 667788887777766554
No 33
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=28.98 E-value=1e+02 Score=16.49 Aligned_cols=31 Identities=13% Similarity=0.244 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCCCCCccccccccHhhHHHHccc
Q psy6172 6 WRECAAWLTRCGVLREDHKANWSEASMSDLALTLRD 41 (130)
Q Consensus 6 e~e~~~WI~~~~~~~~~~~~~~~~~~~~~l~~~L~d 41 (130)
..++++||++-++...+. ..+.++|.+.+++
T Consensus 6 ~~~L~~wL~~~gi~~~~~-----~~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 6 DSDLKSWLKSHGIPVPKS-----AKTRDELLKLAKK 36 (38)
T ss_pred HHHHHHHHHHcCCCCCCC-----CCCHHHHHHHHHH
Confidence 368999999966543221 1256777766554
No 34
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=27.04 E-value=77 Score=20.09 Aligned_cols=24 Identities=8% Similarity=0.325 Sum_probs=20.4
Q ss_pred hhhhhhHHHHHHHHHhhcCCCccC
Q psy6172 71 FLCLRNIRIFIQICRNYFDIAEND 94 (130)
Q Consensus 71 f~~~eNI~~Fl~~c~~~~Gl~~~~ 94 (130)
.=..++|..+|.+|.++|+++..+
T Consensus 7 ~Wt~~~V~~WL~Wa~~ef~L~~~~ 30 (75)
T cd08540 7 LWSTDHVRQWLEWAVKEYGLPDVD 30 (75)
T ss_pred hcCHHHHHHHHHHHHHHhCCCCCC
Confidence 345689999999999899999876
No 35
>PF12579 DUF3755: Protein of unknown function (DUF3755); InterPro: IPR022228 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue N that may be functionally important.
Probab=26.96 E-value=45 Score=18.07 Aligned_cols=14 Identities=14% Similarity=0.010 Sum_probs=9.0
Q ss_pred hhhhhHHHHHHHHH
Q psy6172 72 LCLRNIRIFIQICR 85 (130)
Q Consensus 72 ~~~eNI~~Fl~~c~ 85 (130)
+.++||...|+-.+
T Consensus 14 ~~R~NI~~il~~m~ 27 (35)
T PF12579_consen 14 QTRDNILAILNDMN 27 (35)
T ss_pred HHHHHHHHHHHHHH
Confidence 55667776666665
No 36
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=26.19 E-value=81 Score=19.92 Aligned_cols=24 Identities=8% Similarity=0.307 Sum_probs=20.1
Q ss_pred hhhhhhHHHHHHHHHhhcCCCccC
Q psy6172 71 FLCLRNIRIFIQICRNYFDIAEND 94 (130)
Q Consensus 71 f~~~eNI~~Fl~~c~~~~Gl~~~~ 94 (130)
.=..++|..+|.+|.++|++++.+
T Consensus 7 ~Wt~~~V~~WL~Wa~~ef~L~~i~ 30 (75)
T cd08531 7 LWTREHVRQWLEWAVKEYGLQDVD 30 (75)
T ss_pred hcCHHHHHHHHHHHHHHcCCCCCC
Confidence 345689999999999899998775
No 37
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=26.13 E-value=44 Score=20.63 Aligned_cols=37 Identities=16% Similarity=0.318 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCC-CCCCccccccccHhhHHHHccchHHHHHHhh
Q psy6172 7 RECAAWLTRCGVL-REDHKANWSEASMSDLALTLRDGVVICNLLN 50 (130)
Q Consensus 7 ~e~~~WI~~~~~~-~~~~~~~~~~~~~~~l~~~L~dGvvLC~L~N 50 (130)
.++..||.-.... ..+. ...++...-.||--||.+-.
T Consensus 8 ~~V~~Wl~w~~~e~~l~~-------~~i~~~~F~m~Gk~LC~ms~ 45 (68)
T cd08757 8 NDVLEWLQFVAEQNKLDA-------ECISFQKFNIDGQTLCSMTE 45 (68)
T ss_pred HHHHHHHHHHHHHcCCCC-------CcCCccccCCCHHHHHcCCH
Confidence 4788999865432 2221 11244444889999999854
No 38
>PF06992 Phage_lambda_P: Replication protein P; InterPro: IPR009731 This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin [].; GO: 0006270 DNA-dependent DNA replication initiation
Probab=24.65 E-value=39 Score=26.22 Aligned_cols=18 Identities=17% Similarity=0.348 Sum_probs=13.0
Q ss_pred hHHHHHHHHHh----hcCCCcc
Q psy6172 76 NIRIFIQICRN----YFDIAEN 93 (130)
Q Consensus 76 NI~~Fl~~c~~----~~Gl~~~ 93 (130)
+...|+.||+. .+|+|..
T Consensus 102 S~GqFI~WCk~~~~~~lGLP~~ 123 (233)
T PF06992_consen 102 SPGQFIAWCKPGDYEALGLPSV 123 (233)
T ss_pred ChhHHHHHHhcchHHhcCCCCH
Confidence 46789999992 3677754
No 39
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=24.34 E-value=98 Score=19.39 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=19.8
Q ss_pred hhhhhHHHHHHHHHhhcCCCccCC
Q psy6172 72 LCLRNIRIFIQICRNYFDIAENDL 95 (130)
Q Consensus 72 ~~~eNI~~Fl~~c~~~~Gl~~~~l 95 (130)
=..++|..+|.+|.++|++++.++
T Consensus 7 Wt~~~V~~WL~Wa~~ef~L~~v~~ 30 (71)
T cd08533 7 WTETHVRQWLLWAVNEFSLEGVNF 30 (71)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCc
Confidence 346799999999998899987653
No 40
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=23.83 E-value=97 Score=19.18 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHhhcCCCccC
Q psy6172 73 CLRNIRIFIQICRNYFDIAEND 94 (130)
Q Consensus 73 ~~eNI~~Fl~~c~~~~Gl~~~~ 94 (130)
..++|..+|.+|.+.|++++.+
T Consensus 7 t~~~V~~WL~wa~~ef~L~~i~ 28 (68)
T cd08535 7 SRDDVLQWLRWAENEFSLPPID 28 (68)
T ss_pred CHHHHHHHHHHHHHhcCCCCCC
Confidence 4689999999999889998764
No 41
>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator. SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=22.10 E-value=1.1e+02 Score=20.28 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=21.4
Q ss_pred hhhhhhHHHHHHHHHhhcCCCccCC
Q psy6172 71 FLCLRNIRIFIQICRNYFDIAENDL 95 (130)
Q Consensus 71 f~~~eNI~~Fl~~c~~~~Gl~~~~l 95 (130)
.=..++|..+|.||.++|++++.+.
T Consensus 19 ~Wt~~hV~~WL~Wa~~ef~L~~vd~ 43 (91)
T cd08541 19 LWTQEHVRQWLEWAIKEYGLMEIDT 43 (91)
T ss_pred hcCHHHHHHHHHHHHHHcCCCCCCh
Confidence 5567899999999998999987764
No 42
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=22.05 E-value=71 Score=20.48 Aligned_cols=38 Identities=18% Similarity=0.332 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCCCCCCccccccccHhhHHHHccchHHHHHHhh
Q psy6172 7 RECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLN 50 (130)
Q Consensus 7 ~e~~~WI~~~~~~~~~~~~~~~~~~~~~l~~~L~dGvvLC~L~N 50 (130)
.++++||.-...+- .. + +...+|...-.||--||.+..
T Consensus 13 ~~V~~WL~Wav~ef-~L----~-~~~i~~~~f~m~Gk~LC~ms~ 50 (78)
T cd08538 13 RHVWEWLQFCCDQY-KL----D-ANCISFCHFNISGLQLCSMTQ 50 (78)
T ss_pred HHHHHHHHHHHHHc-CC----C-ccccchhhcCCCHHHHHcCCH
Confidence 47888887664321 11 1 112366677999999999864
No 43
>KOG0251|consensus
Probab=21.73 E-value=1.4e+02 Score=25.72 Aligned_cols=45 Identities=16% Similarity=0.273 Sum_probs=30.6
Q ss_pred hhhhhhHHHHHHHHHhhcCCCccCCCCccccccccChHHHHHHHHHHhCc
Q psy6172 71 FLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDFGDFFKVLHTLSKLSLC 120 (130)
Q Consensus 71 f~~~eNI~~Fl~~c~~~~Gl~~~~lF~~~DL~e~~n~~~V~~~L~~L~~~ 120 (130)
-.|.|.+..|+++||. +|+... |+.-+|- +=..+-+.+|....+.
T Consensus 246 ~~q~e~L~~f~~~ck~-~g~~r~--~~iP~l~--~i~~s~l~~lEe~l~~ 290 (491)
T KOG0251|consen 246 LSQTEKLSEFLKVCKS-VGVDRG--FEIPVLK--RIPISLLEALEEHLRD 290 (491)
T ss_pred HHHHHHHHHHHHHHHH-hccccc--ccCcchh--hcCHHHHHHHHHHHhh
Confidence 4789999999999995 999854 5555655 2234455555555443
No 44
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=21.00 E-value=39 Score=19.71 Aligned_cols=23 Identities=13% Similarity=0.351 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhcCCCccCCCCccc
Q psy6172 77 IRIFIQICRNYFDIAENDLFEPSM 100 (130)
Q Consensus 77 I~~Fl~~c~~~~Gl~~~~lF~~~D 100 (130)
+..+.+.|+ .+|++...+|...|
T Consensus 41 ~~~l~~i~~-~~~v~~~~l~~~~~ 63 (64)
T PF12844_consen 41 VSTLKKIAE-ALGVSLDELFDGED 63 (64)
T ss_dssp HHHHHHHHH-HHTS-HHHHCCCHH
T ss_pred HHHHHHHHH-HhCCCHHHHhccCC
Confidence 566788899 59999988887643
No 45
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=20.73 E-value=66 Score=20.58 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCCCCCccccccccHhhHHHHccchHHHHHHhh
Q psy6172 7 RECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLN 50 (130)
Q Consensus 7 ~e~~~WI~~~~~~~~~~~~~~~~~~~~~l~~~L~dGvvLC~L~N 50 (130)
.++..||+-+..+ .+. + ..++...-.||.-||.+-.
T Consensus 23 ~~V~~Wl~w~~~e-f~L----~---~~~~~~f~m~G~~Lc~ls~ 58 (82)
T smart00251 23 DHVLEWLEWAVKE-FSL----S---PIDFSKFDMSGKELCSMSK 58 (82)
T ss_pred HHHHHHHHHHHHh-cCC----C---CCCcccCCCCHHHHHcCCH
Confidence 4788999887642 322 1 1244444789999999854
No 46
>cd08542 SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed domain of ETS-1. SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.
Probab=20.00 E-value=1.3e+02 Score=19.71 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=20.8
Q ss_pred hhhhhhHHHHHHHHHhhcCCCccC
Q psy6172 71 FLCLRNIRIFIQICRNYFDIAEND 94 (130)
Q Consensus 71 f~~~eNI~~Fl~~c~~~~Gl~~~~ 94 (130)
.=..++|..+|.||.+.|++++.+
T Consensus 21 ~Wt~~~V~~WL~Wa~~ef~L~~i~ 44 (88)
T cd08542 21 QWTETHVRDWVMWAVNEFSLKGVD 44 (88)
T ss_pred hCCHHHHHHHHHHHHHHcCCCCCC
Confidence 456789999999999889999875
Done!